ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd2l15
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1LPHN2_RAT (O88923) Latrophilin-2 precursor (Calcium-independent ... 30 1.1
2HILS1_MOUSE (Q9QYL0) Spermatid-specific linker histone H1-like p... 30 1.9
3DCS2_GOSAR (Q39760) (+)-delta-cadinene synthase isozyme XC14 (EC... 30 1.9
4LPHN2_HUMAN (O95490) Latrophilin-2 precursor (Calcium-independen... 29 2.5
5LPHN2_MOUSE (Q8JZZ7) Latrophilin-2 (Calcium-independent alpha-la... 29 3.3
6SREC_HUMAN (Q14162) Endothelial cells scavenger receptor precurs... 28 5.7
7DCS4_GOSAR (O49853) (+)-delta-cadinene synthase isozyme C2 (EC 4... 28 7.4
8DCS1_GOSHI (P93665) (+)-delta-cadinene synthase (EC 4.2.3.13) (D... 28 7.4
9DCS1_GOSAR (Q39761) (+)-delta-cadinene synthase isozyme XC1 (EC ... 28 7.4
10LPHN2_BOVIN (O97817) Latrophilin-2 precursor (Calcium-independen... 28 7.4
11SNX23_HUMAN (Q96L93) Kinesin-like motor protein C20orf23 (Sortin... 27 9.7
12Y964_METJA (Q58374) Hypothetical protein MJ0964 27 9.7
13PYC1_YEAST (P11154) Pyruvate carboxylase 1 (EC 6.4.1.1) (Pyruvic... 27 9.7

>LPHN2_RAT (O88923) Latrophilin-2 precursor (Calcium-independent|
           alpha-latrotoxin receptor 2) (CIRL-2)
          Length = 1487

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 15/53 (28%), Positives = 24/53 (45%)
 Frame = +1

Query: 145 SDAMSNAYKALLDAFVESTFTFSDQLLRPTESNFAPVDEVGERIKIMEIEGTI 303
           S   ++    LLD   E  F  +D LL PT  +  P D +   + ++  EG +
Sbjct: 634 SSEQAHTATMLLDTLEEGAFVLADNLLEPTRVSM-PTDNIVLEVAVLSTEGQV 685



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>HILS1_MOUSE (Q9QYL0) Spermatid-specific linker histone H1-like protein (TISP64)|
          Length = 170

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 22/87 (25%), Positives = 34/87 (39%), Gaps = 14/87 (16%)
 Frame = +3

Query: 96  ISEGASATSYRQT---WR-----------GVRCHEQCLQGTPGCIC*IHFHIQ*SAPAPH 233
           + +  S T Y  T   WR           G+  H  C +G  G +C      + +  + H
Sbjct: 60  LKKAVSITGYNMTHNTWRFKRVLQNLLDKGMIMHVTCCKGASGSLCLCK---ERALKSNH 116

Query: 234 REQFCTGR*SR*KDKDHGDRRNNPCRL 314
           R + C  R    K +  G R + PC+L
Sbjct: 117 RAKRCQDRQKSQKPQKPGQRESEPCQL 143



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>DCS2_GOSAR (Q39760) (+)-delta-cadinene synthase isozyme XC14 (EC 4.2.3.13)|
           (D-cadinene synthase)
          Length = 554

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = +1

Query: 70  FSTHIKTTPYLKELQRHLTVRLGEASDAMSNAYKALLDAFVE 195
           ++T+ +  PY K ++R     + E  + M  +YKALLD + E
Sbjct: 313 YATYEELIPYTKAIERWDIKCIDELPEYMKPSYKALLDVYEE 354



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>LPHN2_HUMAN (O95490) Latrophilin-2 precursor (Calcium-independent|
           alpha-latrotoxin receptor 2) (Latrophilin homolog 1)
           (Lectomedin-1)
          Length = 1459

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 15/53 (28%), Positives = 24/53 (45%)
 Frame = +1

Query: 145 SDAMSNAYKALLDAFVESTFTFSDQLLRPTESNFAPVDEVGERIKIMEIEGTI 303
           S   ++    LLD   E  F  +D LL PT  +  P + +   + ++  EG I
Sbjct: 630 SSEQAHTATMLLDTLEEGAFVLADNLLEPTRVSM-PTENIVLEVAVLSTEGQI 681



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>LPHN2_MOUSE (Q8JZZ7) Latrophilin-2 (Calcium-independent alpha-latrotoxin|
           receptor 2) (Fragment)
          Length = 891

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 14/53 (26%), Positives = 24/53 (45%)
 Frame = +1

Query: 145 SDAMSNAYKALLDAFVESTFTFSDQLLRPTESNFAPVDEVGERIKIMEIEGTI 303
           S   ++    LLD   E  F  +D LL PT  +  P + +   + ++  EG +
Sbjct: 105 SSEQAHTATMLLDTLEEGAFVLADNLLEPTRVSM-PTENIVLEVAVLSTEGQV 156



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>SREC_HUMAN (Q14162) Endothelial cells scavenger receptor precursor (Acetyl LDL|
           receptor) (Scavenger receptor class F member 1)
          Length = 830

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 12/37 (32%), Positives = 15/37 (40%)
 Frame = +3

Query: 81  HQNHAISEGASATSYRQTWRGVRCHEQCLQGTPGCIC 191
           H      +  S  S    W G +C + CL GT G  C
Sbjct: 270 HNEPCSPDTGSCESCEPGWNGTQCQQPCLPGTFGESC 306



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>DCS4_GOSAR (O49853) (+)-delta-cadinene synthase isozyme C2 (EC 4.2.3.13)|
           (D-cadinene synthase)
          Length = 554

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +1

Query: 70  FSTHIKTTPYLKELQRHLTVRLGEASDAMSNAYKALLDAFVE 195
           ++T+ +  PY   ++R     + E  + M  +YKALLD + E
Sbjct: 313 YATYEELIPYTNAIERWDIKCIDELPEYMKPSYKALLDVYKE 354



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>DCS1_GOSHI (P93665) (+)-delta-cadinene synthase (EC 4.2.3.13) (D-cadinene|
           synthase)
          Length = 554

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +1

Query: 70  FSTHIKTTPYLKELQRHLTVRLGEASDAMSNAYKALLDAFVE 195
           ++T+ +  PY   ++R     + E  + M  +YKALLD + E
Sbjct: 313 YATYEELIPYTNAIERWDIKCIDELPEYMKPSYKALLDVYEE 354



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>DCS1_GOSAR (Q39761) (+)-delta-cadinene synthase isozyme XC1 (EC 4.2.3.13)|
           (D-cadinene synthase)
          Length = 554

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +1

Query: 70  FSTHIKTTPYLKELQRHLTVRLGEASDAMSNAYKALLDAFVE 195
           ++T+ +  PY   ++R     + E  + M  +YKALLD + E
Sbjct: 313 YATYEELIPYTNAIERWDIKCIDEIPEYMKPSYKALLDVYEE 354



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>LPHN2_BOVIN (O97817) Latrophilin-2 precursor (Calcium-independent|
           alpha-latrotoxin receptor 2)
          Length = 1478

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 13/53 (24%), Positives = 24/53 (45%)
 Frame = +1

Query: 145 SDAMSNAYKALLDAFVESTFTFSDQLLRPTESNFAPVDEVGERIKIMEIEGTI 303
           S   ++    LLD   E  F  +D L+ PT  +  P + +   + ++  EG +
Sbjct: 634 SSEQAHTATMLLDTLEEGAFVLADNLVEPTRVSM-PTENIVLEVAVLSTEGQV 685



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>SNX23_HUMAN (Q96L93) Kinesin-like motor protein C20orf23 (Sorting nexin 23)|
          Length = 1317

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 20/89 (22%), Positives = 39/89 (43%), Gaps = 7/89 (7%)
 Frame = +1

Query: 67  RFSTHIKTTPYLKELQRHLTVRLGEASDAM-------SNAYKALLDAFVESTFTFSDQLL 225
           R   H K  PY+++L +HL    G+  + M       + A   + D    S   F+ +  
Sbjct: 173 RVREHPKEGPYVEDLSKHLVQNYGDVEELMDAGNINRTTAATGMNDVSSRSHAIFTIKFT 232

Query: 226 RPTESNFAPVDEVGERIKIMEIEGTIPAD 312
           +    +  P + V  +I ++++ G+  AD
Sbjct: 233 QAKFDSEMPCETV-SKIHLVDLAGSERAD 260



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>Y964_METJA (Q58374) Hypothetical protein MJ0964|
          Length = 680

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 15/50 (30%), Positives = 29/50 (58%)
 Frame = -2

Query: 225 QELITECESGFNKCIQECLVSIAHGI*RLSKSDGKMSLKLLQIWRGFDVR 76
           ++L  +  S   + I E +  IA+GI RL+ +    +L+++ + RG+D R
Sbjct: 403 KDLAEKAISKLAEKIGESVEEIAYGIIRLANTTMAKALRIVTVERGYDPR 452



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>PYC1_YEAST (P11154) Pyruvate carboxylase 1 (EC 6.4.1.1) (Pyruvic carboxylase 1)|
            (PCB 1)
          Length = 1178

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
 Frame = +1

Query: 100  LKELQRHLTVRLGEASD---AMSNAYKALLDAFVESTFTFSDQLLRPTESNFAPVDEVGE 270
            L++++  L  R G+  +   A  N Y  + + F +   T+ D  + PT S  +P+ E  E
Sbjct: 978  LEKIREDLQNRFGDVDECDVASYNMYPRVYEDFQKMRETYGDLSVLPTRSFLSPL-ETDE 1036

Query: 271  RIKIMEIEG 297
             I+++  +G
Sbjct: 1037 EIEVVIEQG 1045


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,372,590
Number of Sequences: 219361
Number of extensions: 828684
Number of successful extensions: 2183
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 2141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2183
length of database: 80,573,946
effective HSP length: 88
effective length of database: 61,270,178
effective search space used: 1470484272
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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