Clone Information

BLAST Search Result

Clone Name	basd2l11
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	WIR1A_WHEAT (Q01482) WIR1A protein	54	2e-07
2	WIR1B_WHEAT (Q01481) WIR1B protein	50	5e-06
3	CSPG3_HUMAN (O14594) Neurocan core protein precursor (Chondroiti...	33	0.37
4	DGKQ_HUMAN (P52824) Diacylglycerol kinase theta (EC 2.7.1.107) (...	32	1.1
5	DNAJ_BRUOV (Q05980) Chaperone protein dnaJ	32	1.1
6	CSPG3_PANTR (Q5IS41) Neurocan core protein precursor (Chondroiti...	32	1.4
7	SFR15_HUMAN (O95104) Splicing factor, arginine/serine-rich 15 (C...	31	2.4
8	POLG_MCFA (P33515) Genome polyprotein [Contains: Capsid protein ...	30	3.2
9	GALT9_DROME (Q8MRC9) Putative polypeptide N-acetylgalactosaminyl...	30	4.1
10	TTP_BOVIN (P53781) Tristetraproline (TTP) (Zinc finger protein 3...	30	4.1
11	COFD_MYCPA (Q73UJ4) LPPG:FO 2-phopspho-L-lactate transferase (EC...	30	5.4
12	PCDBF_PANTR (Q5DRD3) Protocadherin beta 15 precursor (PCDH-beta15)	30	5.4
13	LAMA5_MOUSE (Q61001) Laminin alpha-5 chain precursor	30	5.4
14	HSP1_RHIFE (Q8WNZ7) Sperm protamine P1	29	7.1
15	PCDB8_HUMAN (Q9UN66) Protocadherin beta 8 precursor (PCDH-beta8)...	29	7.1
16	PCDB3_PANTR (Q5DRD1) Protocadherin beta 3 precursor (PCDH-beta3)	29	7.1
17	PCDB3_HUMAN (Q9Y5E6) Protocadherin beta 3 precursor (PCDH-beta3)	29	7.1
18	PCDBG_PANTR (Q5DRC3) Protocadherin beta 16 precursor (PCDH-beta16)	29	7.1
19	PCDBC_PANTR (Q5DRD7) Protocadherin beta 12 precursor (PCDH-beta12)	29	7.1
20	PCDB4_PANTR (Q5DRD0) Protocadherin beta 4 precursor (PCDH-beta4)	29	7.1
21	PCDB4_HUMAN (Q9Y5E5) Protocadherin beta 4 precursor (PCDH-beta4)	29	7.1
22	PCDBA_HUMAN (Q9UN67) Protocadherin beta 10 precursor (PCDH-beta10)	29	7.1
23	PCDBE_PANTR (Q5DRD5) Protocadherin beta 14 precursor (PCDH-beta14)	29	7.1
24	PCDBE_HUMAN (Q9Y5E9) Protocadherin beta 14 precursor (PCDH-beta14)	29	7.1
25	PCDBD_PANTR (Q5DRD6) Protocadherin beta 13 precursor (PCDH-beta13)	29	7.1
26	PCDBA_PANTR (Q5DRD9) Protocadherin beta 10 precursor (PCDH-beta10)	29	7.1
27	PCDB2_PANTR (Q5DRD2) Protocadherin beta 2 precursor (PCDH-beta2)	29	7.1
28	PCDB2_HUMAN (Q9Y5E7) Protocadherin beta 2 precursor (PCDH-beta2)	29	7.1
29	PCDBH_PANTR (Q5DRD4) Protocadherin beta 17 precursor (PCDH-beta17)	29	7.1
30	PCDBG_HUMAN (Q9NRJ7) Protocadherin beta 16 precursor (PCDH-beta1...	29	7.1
31	PCDBF_HUMAN (Q9Y5E8) Protocadherin beta 15 precursor (PCDH-beta15)	29	7.1
32	UTS2_MACMU (Q8HYC2) Urotensin-2 precursor (Urotensin-II) (U-II) ...	29	7.1
33	CSPG3_RAT (P55067) Neurocan core protein precursor (Chondroitin ...	29	7.1
34	PCDBB_PANTR (Q5DRD8) Protocadherin beta 11 precursor (PCDH-beta11)	29	7.1
35	PCDBB_HUMAN (Q9Y5F2) Protocadherin beta 11 precursor (PCDH-beta11)	29	7.1
36	PCDB9_PANTR (Q5DRC4) Protocadherin beta 9 precursor (PCDH-beta9)	29	7.1
37	PCDB9_HUMAN (Q9Y5E1) Protocadherin beta 9 precursor (PCDH-beta9)...	29	7.1
38	ULK2_HUMAN (Q8IYT8) Serine/threonine-protein kinase ULK2 (EC 2.7...	29	9.2
39	STB5L_BRARE (Q5SQE2) Syntaxin-binding protein 5-like	29	9.2
40	CT151_HUMAN (Q8NC74) Protein C20orf151	29	9.2
41	MYSC_ACACA (P10569) Myosin IC heavy chain	29	9.2

>WIR1A_WHEAT (Q01482) WIR1A protein|
          Length = 88

 Score = 54.3 bits (129), Expect = 2e-07
 Identities = 39/80 (48%), Positives = 44/80 (55%), Gaps = 8/80 (10%)
 Frame = +3

Query: 3   GFFARAARFLVLLQIALFVI-SAVIISGPVCNGARP-----GLGGGALDPGSPVCV--GG 158
           G  A   R  VLLQIALFV+ +A+II+  VC GA         G GALDP  P     GG
Sbjct: 5   GSSAGGRRPTVLLQIALFVVVAAIIINSSVCLGATAVHDAAASGTGALDPNVPAVPTPGG 64

Query: 159 RCAPSGQPYTRPGCGTVYKC 218
               +GQPYT  GC TVY C
Sbjct: 65  ----AGQPYTGRGCRTVYGC 80

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>WIR1B_WHEAT (Q01481) WIR1B protein|
          Length = 85

 Score = 49.7 bits (117), Expect = 5e-06
 Identities = 37/76 (48%), Positives = 41/76 (53%), Gaps = 7/76 (9%)
 Frame = +3

Query: 12  ARAARFLVLLQIALFV-ISAVIISGPVCNGAR----PGLGGGALDPGSPVCV--GGRCAP 170
           A   R   L+ IALFV I+AVII+  VC GA        G GALDP  P     GG    
Sbjct: 6   AAGRRPTALVHIALFVAIAAVIINSSVCLGAAVHDAATSGTGALDPNVPAVPTPGG---- 61

Query: 171 SGQPYTRPGCGTVYKC 218
           +GQPYT  GC TVY C
Sbjct: 62  AGQPYTGRGCRTVYGC 77

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>CSPG3_HUMAN (O14594) Neurocan core protein precursor (Chondroitin sulfate|
            proteoglycan 3)
          Length = 1321

 Score = 33.5 bits (75), Expect = 0.37
 Identities = 21/62 (33%), Positives = 30/62 (48%)
 Frame = -2

Query: 300  HASTPWECDYSIVGEAGSAGARAEHLVGTCTRCRTQGECRAGQMVRTVHRRTQDYRGPEH 121
            HA+  ++C+             A+H V T  RCR+ G+    Q+V T  RR+   RG  H
Sbjct: 1237 HATVRYQCNEGF----------AQHHVVTI-RCRSNGKWDRPQIVCTKPRRSHRMRGHHH 1285

Query: 120  HH 115
            HH
Sbjct: 1286 HH 1287

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>DGKQ_HUMAN (P52824) Diacylglycerol kinase theta (EC 2.7.1.107) (Diglyceride|
           kinase theta) (DGK-theta) (DAG kinase theta)
          Length = 942

 Score = 32.0 bits (71), Expect = 1.1
 Identities = 17/34 (50%), Positives = 18/34 (52%), Gaps = 5/34 (14%)
 Frame = +3

Query: 96  GARPGLGGGALDPGSPVC-----VGGRCAPSGQP 182
           GAR  LGGG+  PGSP C      GGR  P   P
Sbjct: 8   GARAWLGGGSPRPGSPACSPVLGSGGRARPGPGP 41

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>DNAJ_BRUOV (Q05980) Chaperone protein dnaJ|
          Length = 375

 Score = 32.0 bits (71), Expect = 1.1
 Identities = 19/55 (34%), Positives = 23/55 (41%)
 Frame = -2

Query: 315 RTRQSHASTPWECDYSIVGEAGSAGARAEHLVGTCTRCRTQGECRAGQMVRTVHR 151
           +T Q    T   CD     E   +GA+      TCT C   G CRA Q   +V R
Sbjct: 134 KTAQIRVPTSITCD-----ECSGSGAKPGSQPTTCTMCSGSGRCRAAQGFFSVER 183

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>CSPG3_PANTR (Q5IS41) Neurocan core protein precursor (Chondroitin sulfate|
            proteoglycan 3)
          Length = 1321

 Score = 31.6 bits (70), Expect = 1.4
 Identities = 20/62 (32%), Positives = 29/62 (46%)
 Frame = -2

Query: 300  HASTPWECDYSIVGEAGSAGARAEHLVGTCTRCRTQGECRAGQMVRTVHRRTQDYRGPEH 121
            HA+  ++C+             A+H V T  RCR+ G+    Q+V T  RR+   R   H
Sbjct: 1237 HATVRYQCNEGF----------AQHHVATI-RCRSNGKWDRPQIVCTKPRRSHRMRRHHH 1285

Query: 120  HH 115
            HH
Sbjct: 1286 HH 1287

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>SFR15_HUMAN (O95104) Splicing factor, arginine/serine-rich 15 (CTD-binding|
            SR-like protein RA4)
          Length = 1147

 Score = 30.8 bits (68), Expect = 2.4
 Identities = 15/33 (45%), Positives = 16/33 (48%)
 Frame = +3

Query: 96   GARPGLGGGALDPGSPVCVGGRCAPSGQPYTRP 194
            G  PGLGG    PG P    GR  P  QP  +P
Sbjct: 919  GGMPGLGGPGPGPGGPEDRDGRQQPPQQPQQQP 951

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>POLG_MCFA (P33515) Genome polyprotein [Contains: Capsid protein C (Core|
            protein); Envelope protein M (Matrix protein); Major
            envelope protein E; Nonstructural protein 1 (NS1);
            Nonstructural protein 2A (NS2A); Flavivirin protease NS2B
            regulatory subunit;
          Length = 3341

 Score = 30.4 bits (67), Expect = 3.2
 Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
 Frame = +1

Query: 127  WTPVVLCASVDGAHHLASPTLALGA---APCTSAHQVLSPSARRPRLPNNGVIALPRRGC 297
            W  V  C+     HH    +L  G    APC   ++VL     R RL   GV+++    C
Sbjct: 3143 WEKVEFCS-----HHYHEMSLKDGRIIIAPCRHENEVLG----RSRLQKGGVVSISESAC 3193

Query: 298  MALSCSQ 318
            MA + +Q
Sbjct: 3194 MAKAYAQ 3200

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>GALT9_DROME (Q8MRC9) Putative polypeptide N-acetylgalactosaminyltransferase 9|
           (EC 2.4.1.41) (Protein-UDP
           acetylgalactosaminyltransferase 9)
           (UDP-GalNAc:polypeptide
           N-acetylgalactosaminyltransferase 9) (pp-GaNTase 9)
          Length = 650

 Score = 30.0 bits (66), Expect = 4.1
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +3

Query: 96  GARPGLGGGALDPGSPVCVGGRCAPSGQPY 185
           G+ PG+GGGA   G P+ +  R  P+G+ +
Sbjct: 50  GSAPGVGGGAGGLGDPIALALRNEPAGEDF 79

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>TTP_BOVIN (P53781) Tristetraproline (TTP) (Zinc finger protein 36 homolog)|
           (Zfp-36) (TIS11A protein) (TIS11)
          Length = 324

 Score = 30.0 bits (66), Expect = 4.1
 Identities = 13/50 (26%), Positives = 20/50 (40%)
 Frame = -2

Query: 264 VGEAGSAGARAEHLVGTCTRCRTQGECRAGQMVRTVHRRTQDYRGPEHHH 115
           +GE   A    ++    C +   QG C  G     +H  ++D   P H H
Sbjct: 128 LGELRQASRHPKYKTELCHKFYLQGRCPYGSRCHFIHNPSEDLAAPGHPH 177

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>COFD_MYCPA (Q73UJ4) LPPG:FO 2-phopspho-L-lactate transferase (EC 2.7.1.-)|
          Length = 337

 Score = 29.6 bits (65), Expect = 5.4
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +2

Query: 194 WVRHRVQVPTRCSALAPADPASPTME 271
           WVR+R QVPT   A   A+ A+ T E
Sbjct: 179 WVRYRAQVPTHSFAFVGAEKAAATTE 204

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>PCDBF_PANTR (Q5DRD3) Protocadherin beta 15 precursor (PCDH-beta15)|
          Length = 787

 Score = 29.6 bits (65), Expect = 5.4
 Identities = 23/60 (38%), Positives = 27/60 (45%)
 Frame = +1

Query: 196 GAAPCTSAHQVLSPSARRPRLPNNGVIALPRRGCMALSCSQYQLLSGSYTEPNIIPVWAH 375
           G+APCT     L P A  P      V+A+          S YQLL    TEP +  VWAH
Sbjct: 568 GSAPCTE----LVPRAAEPGYVVTKVVAVDGDSGQNAWLS-YQLLKA--TEPGLFGVWAH 620

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>LAMA5_MOUSE (Q61001) Laminin alpha-5 chain precursor|
          Length = 3718

 Score = 29.6 bits (65), Expect = 5.4
 Identities = 16/42 (38%), Positives = 19/42 (45%)
 Frame = +3

Query: 78   SGPVCNGARPGLGGGALDPGSPVCVGGRCAPSGQPYTRPGCG 203
            +GP C    PG  G AL PG+  C    C+P G     P  G
Sbjct: 2001 TGPHCERCAPGFYGNALLPGN--CTRCDCSPCGTETCDPQSG 2040

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>HSP1_RHIFE (Q8WNZ7) Sperm protamine P1|
          Length = 51

 Score = 29.3 bits (64), Expect = 7.1
 Identities = 17/38 (44%), Positives = 19/38 (50%), Gaps = 4/38 (10%)
 Frame = +2

Query: 65  CRDHQRPRL----QRSTPRTRWWCSGPR*SCVRRWTVR 166
           CR H R R     QR   R R  C   R +C RR+TVR
Sbjct: 6   CRSHSRSRSRRRRQRCRRRRRRSCGRRRRACYRRYTVR 43

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>PCDB8_HUMAN (Q9UN66) Protocadherin beta 8 precursor (PCDH-beta8) (Protocadherin|
           3I)
          Length = 801

 Score = 29.3 bits (64), Expect = 7.1
 Identities = 23/60 (38%), Positives = 27/60 (45%)
 Frame = +1

Query: 196 GAAPCTSAHQVLSPSARRPRLPNNGVIALPRRGCMALSCSQYQLLSGSYTEPNIIPVWAH 375
           G+APCT     L P A  P      V+A+          S YQLL    TEP +  VWAH
Sbjct: 569 GSAPCTE----LVPRAAEPGYLVTKVVAVDGDSGQNAWLS-YQLLKA--TEPGLFGVWAH 621

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>PCDB3_PANTR (Q5DRD1) Protocadherin beta 3 precursor (PCDH-beta3)|
          Length = 796

 Score = 29.3 bits (64), Expect = 7.1
 Identities = 23/60 (38%), Positives = 27/60 (45%)
 Frame = +1

Query: 196 GAAPCTSAHQVLSPSARRPRLPNNGVIALPRRGCMALSCSQYQLLSGSYTEPNIIPVWAH 375
           G+APCT     L P A  P      V+A+          S YQLL    TEP +  VWAH
Sbjct: 568 GSAPCTE----LVPRAAEPGYLVTKVVAVDGDSGQNAWLS-YQLLKA--TEPGLFGVWAH 620

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>PCDB3_HUMAN (Q9Y5E6) Protocadherin beta 3 precursor (PCDH-beta3)|
          Length = 796

 Score = 29.3 bits (64), Expect = 7.1
 Identities = 23/60 (38%), Positives = 27/60 (45%)
 Frame = +1

Query: 196 GAAPCTSAHQVLSPSARRPRLPNNGVIALPRRGCMALSCSQYQLLSGSYTEPNIIPVWAH 375
           G+APCT     L P A  P      V+A+          S YQLL    TEP +  VWAH
Sbjct: 568 GSAPCTE----LVPRAAEPGYLVTKVVAVDGDSGQNAWLS-YQLLKA--TEPGLFGVWAH 620

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>PCDBG_PANTR (Q5DRC3) Protocadherin beta 16 precursor (PCDH-beta16)|
          Length = 795

 Score = 29.3 bits (64), Expect = 7.1
 Identities = 23/60 (38%), Positives = 27/60 (45%)
 Frame = +1

Query: 196 GAAPCTSAHQVLSPSARRPRLPNNGVIALPRRGCMALSCSQYQLLSGSYTEPNIIPVWAH 375
           G+APCT     L P A  P      V+A+          S YQLL    TEP +  VWAH
Sbjct: 568 GSAPCTE----LVPRAAEPGYLVTKVVAVDGDSGQNAWLS-YQLLKA--TEPGLFGVWAH 620

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>PCDBC_PANTR (Q5DRD7) Protocadherin beta 12 precursor (PCDH-beta12)|
          Length = 795

 Score = 29.3 bits (64), Expect = 7.1
 Identities = 23/60 (38%), Positives = 27/60 (45%)
 Frame = +1

Query: 196 GAAPCTSAHQVLSPSARRPRLPNNGVIALPRRGCMALSCSQYQLLSGSYTEPNIIPVWAH 375
           G+APCT     L P A  P      V+A+          S YQLL    TEP +  VWAH
Sbjct: 568 GSAPCTE----LVPRAAEPGYLVTKVVAVDGDSGQNAWLS-YQLLKA--TEPGLFGVWAH 620

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>PCDB4_PANTR (Q5DRD0) Protocadherin beta 4 precursor (PCDH-beta4)|
          Length = 795

 Score = 29.3 bits (64), Expect = 7.1
 Identities = 23/60 (38%), Positives = 27/60 (45%)
 Frame = +1

Query: 196 GAAPCTSAHQVLSPSARRPRLPNNGVIALPRRGCMALSCSQYQLLSGSYTEPNIIPVWAH 375
           G+APCT     L P A  P      V+A+          S YQLL    TEP +  VWAH
Sbjct: 567 GSAPCTE----LVPRAAEPGYLVTKVVAVDGDSGQNAWLS-YQLLKA--TEPGLFGVWAH 619

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>PCDB4_HUMAN (Q9Y5E5) Protocadherin beta 4 precursor (PCDH-beta4)|
          Length = 795

 Score = 29.3 bits (64), Expect = 7.1
 Identities = 23/60 (38%), Positives = 27/60 (45%)
 Frame = +1

Query: 196 GAAPCTSAHQVLSPSARRPRLPNNGVIALPRRGCMALSCSQYQLLSGSYTEPNIIPVWAH 375
           G+APCT     L P A  P      V+A+          S YQLL    TEP +  VWAH
Sbjct: 567 GSAPCTE----LVPRAAEPGYLVTKVVAVDGDSGQNAWLS-YQLLKA--TEPGLFGVWAH 619

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>PCDBA_HUMAN (Q9UN67) Protocadherin beta 10 precursor (PCDH-beta10)|
          Length = 800

 Score = 29.3 bits (64), Expect = 7.1
 Identities = 23/60 (38%), Positives = 27/60 (45%)
 Frame = +1

Query: 196 GAAPCTSAHQVLSPSARRPRLPNNGVIALPRRGCMALSCSQYQLLSGSYTEPNIIPVWAH 375
           G+APCT     L P A  P      V+A+          S YQLL    TEP +  VWAH
Sbjct: 568 GSAPCTE----LVPRAAEPGYLVTKVVAVDGDSGQNAWLS-YQLLKA--TEPGLFGVWAH 620

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>PCDBE_PANTR (Q5DRD5) Protocadherin beta 14 precursor (PCDH-beta14)|
          Length = 798

 Score = 29.3 bits (64), Expect = 7.1
 Identities = 23/60 (38%), Positives = 27/60 (45%)
 Frame = +1

Query: 196 GAAPCTSAHQVLSPSARRPRLPNNGVIALPRRGCMALSCSQYQLLSGSYTEPNIIPVWAH 375
           G+APCT     L P A  P      V+A+          S YQLL    TEP +  VWAH
Sbjct: 568 GSAPCTE----LVPRAAEPGYLVTKVVAVDGDSGQNAWLS-YQLLKA--TEPGLFGVWAH 620

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>PCDBE_HUMAN (Q9Y5E9) Protocadherin beta 14 precursor (PCDH-beta14)|
          Length = 798

 Score = 29.3 bits (64), Expect = 7.1
 Identities = 23/60 (38%), Positives = 27/60 (45%)
 Frame = +1

Query: 196 GAAPCTSAHQVLSPSARRPRLPNNGVIALPRRGCMALSCSQYQLLSGSYTEPNIIPVWAH 375
           G+APCT     L P A  P      V+A+          S YQLL    TEP +  VWAH
Sbjct: 568 GSAPCTE----LVPRAAEPGYLVTKVVAVDGDSGQNAWLS-YQLLKA--TEPGLFGVWAH 620

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>PCDBD_PANTR (Q5DRD6) Protocadherin beta 13 precursor (PCDH-beta13)|
          Length = 798

 Score = 29.3 bits (64), Expect = 7.1
 Identities = 23/60 (38%), Positives = 27/60 (45%)
 Frame = +1

Query: 196 GAAPCTSAHQVLSPSARRPRLPNNGVIALPRRGCMALSCSQYQLLSGSYTEPNIIPVWAH 375
           G+APCT     L P A  P      V+A+          S YQLL    TEP +  VWAH
Sbjct: 568 GSAPCTE----LVPRAAEPGYLVTKVVAVDGDSGQNAWLS-YQLLKA--TEPGLFGVWAH 620

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>PCDBA_PANTR (Q5DRD9) Protocadherin beta 10 precursor (PCDH-beta10)|
          Length = 798

 Score = 29.3 bits (64), Expect = 7.1
 Identities = 23/60 (38%), Positives = 27/60 (45%)
 Frame = +1

Query: 196 GAAPCTSAHQVLSPSARRPRLPNNGVIALPRRGCMALSCSQYQLLSGSYTEPNIIPVWAH 375
           G+APCT     L P A  P      V+A+          S YQLL    TEP +  VWAH
Sbjct: 568 GSAPCTE----LVPRAAEPGYLVTKVVAVDGDSGQNAWLS-YQLLKA--TEPGLFGVWAH 620

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>PCDB2_PANTR (Q5DRD2) Protocadherin beta 2 precursor (PCDH-beta2)|
          Length = 798

 Score = 29.3 bits (64), Expect = 7.1
 Identities = 23/60 (38%), Positives = 27/60 (45%)
 Frame = +1

Query: 196 GAAPCTSAHQVLSPSARRPRLPNNGVIALPRRGCMALSCSQYQLLSGSYTEPNIIPVWAH 375
           G+APCT     L P A  P      V+A+          S YQLL    TEP +  VWAH
Sbjct: 570 GSAPCTE----LVPRAAEPGYLVTKVVAVDGDSGQNAWLS-YQLLKA--TEPGLFGVWAH 622

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>PCDB2_HUMAN (Q9Y5E7) Protocadherin beta 2 precursor (PCDH-beta2)|
          Length = 798

 Score = 29.3 bits (64), Expect = 7.1
 Identities = 23/60 (38%), Positives = 27/60 (45%)
 Frame = +1

Query: 196 GAAPCTSAHQVLSPSARRPRLPNNGVIALPRRGCMALSCSQYQLLSGSYTEPNIIPVWAH 375
           G+APCT     L P A  P      V+A+          S YQLL    TEP +  VWAH
Sbjct: 570 GSAPCTE----LVPRAAEPGYLVTKVVAVDGDSGQNAWLS-YQLLKA--TEPGLFGVWAH 622

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>PCDBH_PANTR (Q5DRD4) Protocadherin beta 17 precursor (PCDH-beta17)|
          Length = 788

 Score = 29.3 bits (64), Expect = 7.1
 Identities = 23/60 (38%), Positives = 27/60 (45%)
 Frame = +1

Query: 196 GAAPCTSAHQVLSPSARRPRLPNNGVIALPRRGCMALSCSQYQLLSGSYTEPNIIPVWAH 375
           G+APCT     L P A  P      V+A+          S YQLL    TEP +  VWAH
Sbjct: 569 GSAPCTE----LVPRAAEPGYLVTKVVAVDGDSGQNAWLS-YQLLKA--TEPGLFGVWAH 621

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>PCDBG_HUMAN (Q9NRJ7) Protocadherin beta 16 precursor (PCDH-beta16)|
           (Protocadherin 3X)
          Length = 776

 Score = 29.3 bits (64), Expect = 7.1
 Identities = 23/60 (38%), Positives = 27/60 (45%)
 Frame = +1

Query: 196 GAAPCTSAHQVLSPSARRPRLPNNGVIALPRRGCMALSCSQYQLLSGSYTEPNIIPVWAH 375
           G+APCT     L P A  P      V+A+          S YQLL    TEP +  VWAH
Sbjct: 568 GSAPCTE----LVPRAAEPGYLVTKVVAVDGDSGQNAWLS-YQLLKA--TEPGLFGVWAH 620

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>PCDBF_HUMAN (Q9Y5E8) Protocadherin beta 15 precursor (PCDH-beta15)|
          Length = 787

 Score = 29.3 bits (64), Expect = 7.1
 Identities = 23/60 (38%), Positives = 27/60 (45%)
 Frame = +1

Query: 196 GAAPCTSAHQVLSPSARRPRLPNNGVIALPRRGCMALSCSQYQLLSGSYTEPNIIPVWAH 375
           G+APCT     L P A  P      V+A+          S YQLL    TEP +  VWAH
Sbjct: 568 GSAPCTE----LVPRAAEPGYLVTKVVAVDGDSGQNAWLS-YQLLKA--TEPGLFGVWAH 620

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>UTS2_MACMU (Q8HYC2) Urotensin-2 precursor (Urotensin-II) (U-II) (UII)|
          Length = 125

 Score = 29.3 bits (64), Expect = 7.1
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +2

Query: 2   GVLRQSRAFPGAPPDRSLRHLCRDHQRPRLQRSTPRTRW 118
           G LR+ + F G  PD  L HL    ++P  +R TP   W
Sbjct: 83  GNLRKFQDFSGQDPDILLSHLLARIRKPYKKRETPDCFW 121

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>CSPG3_RAT (P55067) Neurocan core protein precursor (Chondroitin sulfate|
            proteoglycan 3) (245 kDa early postnatal core
            glycoprotein) [Contains: 150 kDa adult core glycoprotein]
          Length = 1257

 Score = 29.3 bits (64), Expect = 7.1
 Identities = 19/61 (31%), Positives = 28/61 (45%)
 Frame = -2

Query: 300  HASTPWECDYSIVGEAGSAGARAEHLVGTCTRCRTQGECRAGQMVRTVHRRTQDYRGPEH 121
            HA+  ++CD             ++H V T  RCR+ G+    Q+V T  RR+   R   H
Sbjct: 1178 HATVRYQCDEGF----------SQHHVATI-RCRSNGKWDRPQIVCTKPRRSHRMRRHHH 1226

Query: 120  H 118
            H
Sbjct: 1227 H 1227

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>PCDBB_PANTR (Q5DRD8) Protocadherin beta 11 precursor (PCDH-beta11)|
          Length = 797

 Score = 29.3 bits (64), Expect = 7.1
 Identities = 23/60 (38%), Positives = 27/60 (45%)
 Frame = +1

Query: 196 GAAPCTSAHQVLSPSARRPRLPNNGVIALPRRGCMALSCSQYQLLSGSYTEPNIIPVWAH 375
           G+APCT     L P A  P      V+A+          S YQLL    TEP +  VWAH
Sbjct: 568 GSAPCTE----LVPRAAEPGYLVTKVVAVDGDSGQNAWLS-YQLLKA--TEPGLFXVWAH 620

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>PCDBB_HUMAN (Q9Y5F2) Protocadherin beta 11 precursor (PCDH-beta11)|
          Length = 797

 Score = 29.3 bits (64), Expect = 7.1
 Identities = 23/60 (38%), Positives = 27/60 (45%)
 Frame = +1

Query: 196 GAAPCTSAHQVLSPSARRPRLPNNGVIALPRRGCMALSCSQYQLLSGSYTEPNIIPVWAH 375
           G+APCT     L P A  P      V+A+          S YQLL    TEP +  VWAH
Sbjct: 568 GSAPCTE----LVPRAAEPGYLVTKVVAVDGDSGQNAWLS-YQLLKA--TEPGLFGVWAH 620

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>PCDB9_PANTR (Q5DRC4) Protocadherin beta 9 precursor (PCDH-beta9)|
          Length = 797

 Score = 29.3 bits (64), Expect = 7.1
 Identities = 23/60 (38%), Positives = 27/60 (45%)
 Frame = +1

Query: 196 GAAPCTSAHQVLSPSARRPRLPNNGVIALPRRGCMALSCSQYQLLSGSYTEPNIIPVWAH 375
           G+APCT     L P A  P      V+A+          S YQLL    TEP +  VWAH
Sbjct: 568 GSAPCTE----LVPRAAEPGYLVTKVVAVDGDSGQNAWLS-YQLLKA--TEPGLFGVWAH 620

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>PCDB9_HUMAN (Q9Y5E1) Protocadherin beta 9 precursor (PCDH-beta9) (Protocadherin|
           3H)
          Length = 797

 Score = 29.3 bits (64), Expect = 7.1
 Identities = 23/60 (38%), Positives = 27/60 (45%)
 Frame = +1

Query: 196 GAAPCTSAHQVLSPSARRPRLPNNGVIALPRRGCMALSCSQYQLLSGSYTEPNIIPVWAH 375
           G+APCT     L P A  P      V+A+          S YQLL    TEP +  VWAH
Sbjct: 568 GSAPCTE----LVPRAAEPGYLVTKVVAVDGDSGQNAWLS-YQLLKA--TEPGLFGVWAH 620

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>ULK2_HUMAN (Q8IYT8) Serine/threonine-protein kinase ULK2 (EC 2.7.11.1)|
           (Unc-51-like kinase 2)
          Length = 1036

 Score = 28.9 bits (63), Expect = 9.2
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = +3

Query: 63  SAVIISGPVCNGARPGLGGGALDPGSPVCVGGRCAPSG 176
           S   +SG VC G+ PG G G+  PG+      R  P G
Sbjct: 759 SLCAMSGRVCVGSPPGPGFGSSPPGAEAAPSLRYVPYG 796

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>STB5L_BRARE (Q5SQE2) Syntaxin-binding protein 5-like|
          Length = 1159

 Score = 28.9 bits (63), Expect = 9.2
 Identities = 19/62 (30%), Positives = 24/62 (38%)
 Frame = +1

Query: 169 HLASPTLALGAAPCTSAHQVLSPSARRPRLPNNGVIALPRRGCMALSCSQYQLLSGSYTE 348
           H  SPT    + PC S    +      PRL   G    P R   + +C +  L   S TE
Sbjct: 730 HCTSPT----SQPCPSGRARVPGGPEGPRLARRGPGRPPFRKAQSAACMEVSLPVSSLTE 785

Query: 349 PN 354
            N
Sbjct: 786 EN 787

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>CT151_HUMAN (Q8NC74) Protein C20orf151|
          Length = 664

 Score = 28.9 bits (63), Expect = 9.2
 Identities = 20/62 (32%), Positives = 25/62 (40%)
 Frame = +1

Query: 163 AHHLASPTLALGAAPCTSAHQVLSPSARRPRLPNNGVIALPRRGCMALSCSQYQLLSGSY 342
           A H ASP     + P T + Q LS   +  R+P     + P      L  SQ  L S   
Sbjct: 469 AAHTASPEPPTQSGPLTRSPQALSNGTKGTRVPEQEEASTPMDPSRPLPGSQLSLSSPGS 528

Query: 343 TE 348
           TE
Sbjct: 529 TE 530

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>MYSC_ACACA (P10569) Myosin IC heavy chain|
          Length = 1168

 Score = 28.9 bits (63), Expect = 9.2
 Identities = 18/37 (48%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
 Frame = +3

Query: 81   GPVCNGA---RPGLGGGALDPGSPVCVGGRCAPSGQP 182
            GP  +GA   RP  GGG    G P   GGR +PSG P
Sbjct: 937  GPSPSGAVSPRPSPGGGG---GGPSPFGGRPSPSGPP 970


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 83,016,793
Number of Sequences: 219361
Number of extensions: 1780170
Number of successful extensions: 5385
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 4991
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5369
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4085413911
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result