Clone Name | basd2l11 |
---|---|
Clone Library Name | barley_pub |
>gb|M95500.1|WHTWIR1APR Wheat WIR1A gene, complete cds Length = 842 Score = 48.1 bits (24), Expect = 0.030 Identities = 27/28 (96%) Strand = Plus / Plus Query: 32 ggtgctcctccagatcgctctcttcgtc 59 ||||||||| |||||||||||||||||| Sbjct: 200 ggtgctcctgcagatcgctctcttcgtc 227
>gb|AC155651.4| Mus musculus 6 BAC RP24-111E13 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 175599 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Plus Query: 296 gcatggctctgtcttgttcgca 317 |||||||||||||||||||||| Sbjct: 50266 gcatggctctgtcttgttcgca 50287
>gb|AC158664.5| Mus musculus 6 BAC RP23-24F17 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 232894 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Minus Query: 296 gcatggctctgtcttgttcgca 317 |||||||||||||||||||||| Sbjct: 216757 gcatggctctgtcttgttcgca 216736
>gb|AY664414.1| Zea mays cultivar B73 locus 9008, complete sequence Length = 339089 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 239 gcgcccgcagaccccgcctcc 259 ||||||||||||||||||||| Sbjct: 89455 gcgcccgcagaccccgcctcc 89435
>ref|XM_547974.2| PREDICTED: Canis familiaris similar to CG32732-PA (LOC490852), mRNA Length = 2695 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 106 caggactcggtggtggtgctctgg 129 ||||||| |||||||||||||||| Sbjct: 2164 caggactgggtggtggtgctctgg 2187
>gb|AC003988.1| Homo sapiens PAC clone RP5-1171L6 from 7, complete sequence Length = 58725 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 424 catctagtatttgccaaaat 443 |||||||||||||||||||| Sbjct: 12338 catctagtatttgccaaaat 12357
>emb|BX572600.1| Rhodopseudomonas palustris CGA009 complete genome; segment 8/16 Length = 349640 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 105 ccaggactcggtggtggtgc 124 |||||||||||||||||||| Sbjct: 236077 ccaggactcggtggtggtgc 236096
>gb|AF192304.6| Homo sapiens chromosome 8 clone CTC-458A3 map 8q24.3, complete sequence Length = 177028 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 431 tatttgccaaaataaagatg 450 |||||||||||||||||||| Sbjct: 50186 tatttgccaaaataaagatg 50205
>emb|AJ431203.1|NTO431203 Nicotiana tomentosiformis endogenous pararetrovirus partial proviral ORF3 & ORF4 pseudogenes Length = 1928 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 331 tcaggatcttatactgaacc 350 |||||||||||||||||||| Sbjct: 601 tcaggatcttatactgaacc 620 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,645,574 Number of Sequences: 3902068 Number of extensions: 3645574 Number of successful extensions: 83330 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 9 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 83316 Number of HSP's gapped (non-prelim): 14 length of query: 532 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 509 effective length of database: 17,143,297,704 effective search space: 8725938531336 effective search space used: 8725938531336 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)