ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd3a05 |
|---|---|
| Clone Library Name | barley_pub |
>SSM1_YEAST (P53078) Protein SSM1| Length = 280 Score = 48.5 bits (114), Expect = 9e-06 Identities = 44/148 (29%), Positives = 69/148 (46%), Gaps = 7/148 (4%) Frame = +3 Query: 15 IALGHDVHPDEYHSYVHGRLPY-DVIAADPQLAAALQSMPQR-KI----LFTNSDRAHMR 176 + + H V+ EY+ V LP D++ D L L + Q KI LFTN+ + H Sbjct: 114 LVMFHKVNALEYNRLVDDSLPLQDILKPDIPLRNMLLRLRQSGKIDKLWLFTNAYKNHAI 173 Query: 177 RSLERLGLDEALFDGVVCFETMNPNLFGEXXXXXXXXXRPAVVLKPSVHAFATALRVAG- 353 R L LG+ + LFDG+ + + +V KP V AF A++ +G Sbjct: 174 RCLRLLGIAD-LFDGLTYCDYSRTD---------------TLVCKPHVKAFEKAMKESGL 217 Query: 354 TNPRRTLFLDDNERNIASGKALGLRTAL 437 F+DD+ +NI +G LG++T + Sbjct: 218 ARYENAYFIDDSGKNIETGIKLGMKTCI 245
>YEM7_YEAST (P40025) Hypothetical 37.7 kDa protein in PIP1-GLN3 intergenic| region Length = 321 Score = 42.7 bits (99), Expect = 5e-04 Identities = 36/136 (26%), Positives = 62/136 (45%), Gaps = 9/136 (6%) Frame = +3 Query: 45 EYHSYVHGRLPY-DVIAADPQLAAALQSMPQRKI-------LFTNSDRAHMRRSLERLGL 200 +Y++++ LP D + D +L L ++ ++K+ LFTNS + H R ++ LG+ Sbjct: 122 QYNTFIDDSLPLQDYLKPDWKLRELLINLKKKKLGKFDKLWLFTNSYKNHAIRCVKILGI 181 Query: 201 DEALFDGVVCFETMNPNLFGEXXXXXXXXXRPAVVLKPSVHAFATALRVAGTNP-RRTLF 377 + LFDG+ P + KP F TA +G + F Sbjct: 182 AD-LFDGITYCHYDRP-------------IEEEFICKPDPKFFETAKLQSGLSSFANAWF 227 Query: 378 LDDNERNIASGKALGL 425 +DDNE N+ S ++G+ Sbjct: 228 IDDNESNVRSALSMGM 243
>YAI5_SCHPO (Q09893) Hypothetical protein C24B11.05 in chromosome I| Length = 226 Score = 38.5 bits (88), Expect = 0.010 Identities = 35/140 (25%), Positives = 61/140 (43%), Gaps = 4/140 (2%) Frame = +3 Query: 15 IALGHDVHPDEYHSYVHGRLPYD-VIAADPQLAAALQSMPQRKI--LFTNSDRAHMRRSL 185 + L H++ +Y V LP + VI D L L + ++ +FTN+ H R L Sbjct: 64 LVLHHEIDAVDYDQRVDQSLPLEKVIKKDEVLREMLLELRKKYKCWIFTNAYIVHANRVL 123 Query: 186 ERLGLDEALFDGVVCFETMNPNLFGEXXXXXXXXXRPAVVLKPSVHAFATALRVAG-TNP 362 + LG+++ FDG+ + +L + KP + +R AG T+ Sbjct: 124 KYLGIEDC-FDGITYCDYNAKDL----------------IAKPMPEMYERVMREAGVTDK 166 Query: 363 RRTLFLDDNERNIASGKALG 422 + +F+DD+ NI + G Sbjct: 167 DKCIFVDDSYGNILGAREFG 186
>PPAX_BACHD (Q9K6Y7) Pyrophosphatase ppaX (EC 3.6.1.1)| Length = 215 Score = 37.7 bits (86), Expect = 0.016 Identities = 26/107 (24%), Positives = 43/107 (40%) Frame = +3 Query: 144 LFTNSDRAHMRRSLERLGLDEALFDGVVCFETMNPNLFGEXXXXXXXXXRPAVVLKPSVH 323 + T R + L+ GLDE FD +V + + +KP+ Sbjct: 103 IVTTKIRETAMKGLKLFGLDE-FFDVIVALDDVEN-------------------VKPNPE 142 Query: 324 AFATALRVAGTNPRRTLFLDDNERNIASGKALGLRTALVGKRARSKE 464 A+ G T+ + DN +I GK G++TA+VG R ++ Sbjct: 143 PLEKAMNALGAKKEETIMVGDNSHDILGGKNAGVKTAVVGYAIRGED 189
>YIHX_SHIFL (P0A8Y4) Phosphatase yihX (EC 3.1.3.-)| Length = 199 Score = 34.7 bits (78), Expect = 0.14 Identities = 16/44 (36%), Positives = 22/44 (50%) Frame = +3 Query: 309 KPSVHAFATALRVAGTNPRRTLFLDDNERNIASGKALGLRTALV 440 KP + L+ G +P T+F DDN NI LG+ + LV Sbjct: 141 KPEARIYQHVLQAEGFSPSDTVFFDDNADNIEGANQLGITSILV 184
>YIHX_ECOLI (P0A8Y3) Phosphatase yihX (EC 3.1.3.-)| Length = 199 Score = 34.7 bits (78), Expect = 0.14 Identities = 16/44 (36%), Positives = 22/44 (50%) Frame = +3 Query: 309 KPSVHAFATALRVAGTNPRRTLFLDDNERNIASGKALGLRTALV 440 KP + L+ G +P T+F DDN NI LG+ + LV Sbjct: 141 KPEARIYQHVLQAEGFSPSDTVFFDDNADNIEGANQLGITSILV 184
>GPH2_PSEAE (Q9HZ62) Phosphoglycolate phosphatase 2 (EC 3.1.3.18) (PGPase2)| (PGP 2) Length = 226 Score = 33.5 bits (75), Expect = 0.31 Identities = 17/44 (38%), Positives = 23/44 (52%) Frame = +3 Query: 309 KPSVHAFATALRVAGTNPRRTLFLDDNERNIASGKALGLRTALV 440 KP A G +P R LF+ D+ R+I SG+ G +TA V Sbjct: 146 KPDPEPLLLACSQLGIDPSRVLFIGDDLRDIESGRDAGTKTAAV 189
>GPH_AQUAE (O67359) Phosphoglycolate phosphatase (EC 3.1.3.18) (PGPase) (PGP)| Length = 213 Score = 32.7 bits (73), Expect = 0.53 Identities = 15/43 (34%), Positives = 22/43 (51%) Frame = +3 Query: 309 KPSVHAFATALRVAGTNPRRTLFLDDNERNIASGKALGLRTAL 437 KPS L + G P + L + D + +I +GK G +TAL Sbjct: 137 KPSPTPVLKTLEILGEEPEKALIVGDTDADIEAGKRAGTKTAL 179
>GPH1_PSEAE (Q9S586) Phosphoglycolate phosphatase 1 (EC 3.1.3.18) (PGPase 1)| (PGP 1) Length = 272 Score = 32.3 bits (72), Expect = 0.69 Identities = 14/42 (33%), Positives = 23/42 (54%) Frame = +3 Query: 309 KPSVHAFATALRVAGTNPRRTLFLDDNERNIASGKALGLRTA 434 KP A +++AG P LF+ D+ ++ + KA G+R A Sbjct: 157 KPDPAALLFVMKMAGIEPEDALFVGDSRNDVLAAKAAGVRCA 198
>PPAX_BACSU (Q9JMQ2) Pyrophosphatase ppaX (EC 3.6.1.1)| Length = 216 Score = 30.4 bits (67), Expect = 2.6 Identities = 15/52 (28%), Positives = 24/52 (46%) Frame = +3 Query: 309 KPSVHAFATALRVAGTNPRRTLFLDDNERNIASGKALGLRTALVGKRARSKE 464 KP AL+ G+ P + + DN ++ +GK G +TA V + E Sbjct: 141 KPDPEPVLLALKQLGSEPAEAIMVGDNYHDVLAGKNAGTKTAGVAWTIKGPE 192
>CBBY_RHOCA (O33513) Protein cbbY| Length = 227 Score = 30.4 bits (67), Expect = 2.6 Identities = 15/43 (34%), Positives = 22/43 (51%) Frame = +3 Query: 309 KPSVHAFATALRVAGTNPRRTLFLDDNERNIASGKALGLRTAL 437 KP+ + AL+ G P L +D+ +AS +A GLR L Sbjct: 152 KPAPDVYLRALQGLGLPPAACLAFEDSRAGLASARAAGLRVVL 194
>PPAX_BACHK (Q6HBC8) Pyrophosphatase ppaX (EC 3.6.1.1)| Length = 216 Score = 30.0 bits (66), Expect = 3.4 Identities = 14/45 (31%), Positives = 21/45 (46%) Frame = +3 Query: 306 LKPSVHAFATALRVAGTNPRRTLFLDDNERNIASGKALGLRTALV 440 +KP AL++ P L + DN +I G+ G +TA V Sbjct: 137 VKPHPEPLQKALQLLDAKPEEALMVGDNHHDIVGGQNAGTKTAAV 181
>PPAX_BACC1 (Q72XV8) Pyrophosphatase ppaX (EC 3.6.1.1)| Length = 216 Score = 30.0 bits (66), Expect = 3.4 Identities = 14/45 (31%), Positives = 21/45 (46%) Frame = +3 Query: 306 LKPSVHAFATALRVAGTNPRRTLFLDDNERNIASGKALGLRTALV 440 +KP AL++ P L + DN +I G+ G +TA V Sbjct: 137 VKPHPEPLQKALQLLDAKPEEALMVGDNHHDIVGGQNAGTKTAAV 181
>PPAX_BACAN (Q6HQY9) Pyrophosphatase ppaX (EC 3.6.1.1)| Length = 216 Score = 30.0 bits (66), Expect = 3.4 Identities = 14/45 (31%), Positives = 21/45 (46%) Frame = +3 Query: 306 LKPSVHAFATALRVAGTNPRRTLFLDDNERNIASGKALGLRTALV 440 +KP AL++ P L + DN +I G+ G +TA V Sbjct: 137 VKPHPEPLQKALQLLDAKPEEALMVGDNHHDIVGGQNAGTKTAAV 181
>PPAX_BACCR (Q815I8) Pyrophosphatase ppaX (EC 3.6.1.1)| Length = 216 Score = 29.6 bits (65), Expect = 4.4 Identities = 14/45 (31%), Positives = 20/45 (44%) Frame = +3 Query: 306 LKPSVHAFATALRVAGTNPRRTLFLDDNERNIASGKALGLRTALV 440 +KP AL + P L + DN +I G+ G +TA V Sbjct: 137 VKPHPEPLQKALELLDAKPEEALMVGDNHHDIVGGQNAGTKTAAV 181
>YRFG_SHIFL (P64637) Hypothetical protein yrfG| Length = 222 Score = 29.3 bits (64), Expect = 5.8 Identities = 29/108 (26%), Positives = 45/108 (41%) Frame = +3 Query: 114 ALQSMPQRKILFTNSDRAHMRRSLERLGLDEALFDGVVCFETMNPNLFGEXXXXXXXXXR 293 AL++ +++IL TN+ ++ LE GLD L ++ + FG Sbjct: 104 ALKASGKQRILLTNAHPHNLAVKLEHTGLDAHLD------LLLSTHTFGYPKEDQRLW-- 155 Query: 294 PAVVLKPSVHAFATALRVAGTNPRRTLFLDDNERNIASGKALGLRTAL 437 HA A A G RTLF+DD+E + + G+R L Sbjct: 156 ---------HAVAEA---TGLKAERTLFIDDSEAILDAAAQFGIRYCL 191
>YRFG_ECOLI (P64636) Hypothetical protein yrfG| Length = 222 Score = 29.3 bits (64), Expect = 5.8 Identities = 29/108 (26%), Positives = 45/108 (41%) Frame = +3 Query: 114 ALQSMPQRKILFTNSDRAHMRRSLERLGLDEALFDGVVCFETMNPNLFGEXXXXXXXXXR 293 AL++ +++IL TN+ ++ LE GLD L ++ + FG Sbjct: 104 ALKASGKQRILLTNAHPHNLAVKLEHTGLDAHLD------LLLSTHTFGYPKEDQRLW-- 155 Query: 294 PAVVLKPSVHAFATALRVAGTNPRRTLFLDDNERNIASGKALGLRTAL 437 HA A A G RTLF+DD+E + + G+R L Sbjct: 156 ---------HAVAEA---TGLKAERTLFIDDSEAILDAAAQFGIRYCL 191
>UTR4_YEAST (P32626) Protein UTR4 (Unknown transcript 4 protein)| Length = 241 Score = 28.9 bits (63), Expect = 7.6 Identities = 14/54 (25%), Positives = 22/54 (40%) Frame = +3 Query: 309 KPSVHAFATALRVAGTNPRRTLFLDDNERNIASGKALGLRTALVGKRARSKEAD 470 K ++A LR G LFL DN + + +G+ T L + + D Sbjct: 175 KTETQSYANILRDIGAKASEVLFLSDNPLELDAAAGVGIATGLASRPGNAPVPD 228
>CBBY_RHOSH (P95649) Protein cbbY| Length = 230 Score = 28.5 bits (62), Expect = 9.9 Identities = 14/40 (35%), Positives = 20/40 (50%) Frame = +3 Query: 309 KPSVHAFATALRVAGTNPRRTLFLDDNERNIASGKALGLR 428 KPS + ALR P R + L+D+ + + K GLR Sbjct: 151 KPSPDIYRLALRELDVPPERAVALEDSLNGLRAAKGAGLR 190 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 42,854,566 Number of Sequences: 219361 Number of extensions: 658947 Number of successful extensions: 3197 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 3164 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3195 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3362826254 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
