ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd3a05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SSM1_YEAST (P53078) Protein SSM1 49 9e-06
2YEM7_YEAST (P40025) Hypothetical 37.7 kDa protein in PIP1-GLN3 i... 43 5e-04
3YAI5_SCHPO (Q09893) Hypothetical protein C24B11.05 in chromosome I 39 0.010
4PPAX_BACHD (Q9K6Y7) Pyrophosphatase ppaX (EC 3.6.1.1) 38 0.016
5YIHX_SHIFL (P0A8Y4) Phosphatase yihX (EC 3.1.3.-) 35 0.14
6YIHX_ECOLI (P0A8Y3) Phosphatase yihX (EC 3.1.3.-) 35 0.14
7GPH2_PSEAE (Q9HZ62) Phosphoglycolate phosphatase 2 (EC 3.1.3.18)... 33 0.31
8GPH_AQUAE (O67359) Phosphoglycolate phosphatase (EC 3.1.3.18) (P... 33 0.53
9GPH1_PSEAE (Q9S586) Phosphoglycolate phosphatase 1 (EC 3.1.3.18)... 32 0.69
10PPAX_BACSU (Q9JMQ2) Pyrophosphatase ppaX (EC 3.6.1.1) 30 2.6
11CBBY_RHOCA (O33513) Protein cbbY 30 2.6
12PPAX_BACHK (Q6HBC8) Pyrophosphatase ppaX (EC 3.6.1.1) 30 3.4
13PPAX_BACC1 (Q72XV8) Pyrophosphatase ppaX (EC 3.6.1.1) 30 3.4
14PPAX_BACAN (Q6HQY9) Pyrophosphatase ppaX (EC 3.6.1.1) 30 3.4
15PPAX_BACCR (Q815I8) Pyrophosphatase ppaX (EC 3.6.1.1) 30 4.4
16YRFG_SHIFL (P64637) Hypothetical protein yrfG 29 5.8
17YRFG_ECOLI (P64636) Hypothetical protein yrfG 29 5.8
18UTR4_YEAST (P32626) Protein UTR4 (Unknown transcript 4 protein) 29 7.6
19CBBY_RHOSH (P95649) Protein cbbY 28 9.9

>SSM1_YEAST (P53078) Protein SSM1|
          Length = 280

 Score = 48.5 bits (114), Expect = 9e-06
 Identities = 44/148 (29%), Positives = 69/148 (46%), Gaps = 7/148 (4%)
 Frame = +3

Query: 15  IALGHDVHPDEYHSYVHGRLPY-DVIAADPQLAAALQSMPQR-KI----LFTNSDRAHMR 176
           + + H V+  EY+  V   LP  D++  D  L   L  + Q  KI    LFTN+ + H  
Sbjct: 114 LVMFHKVNALEYNRLVDDSLPLQDILKPDIPLRNMLLRLRQSGKIDKLWLFTNAYKNHAI 173

Query: 177 RSLERLGLDEALFDGVVCFETMNPNLFGEXXXXXXXXXRPAVVLKPSVHAFATALRVAG- 353
           R L  LG+ + LFDG+   +    +                +V KP V AF  A++ +G 
Sbjct: 174 RCLRLLGIAD-LFDGLTYCDYSRTD---------------TLVCKPHVKAFEKAMKESGL 217

Query: 354 TNPRRTLFLDDNERNIASGKALGLRTAL 437
                  F+DD+ +NI +G  LG++T +
Sbjct: 218 ARYENAYFIDDSGKNIETGIKLGMKTCI 245



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>YEM7_YEAST (P40025) Hypothetical 37.7 kDa protein in PIP1-GLN3 intergenic|
           region
          Length = 321

 Score = 42.7 bits (99), Expect = 5e-04
 Identities = 36/136 (26%), Positives = 62/136 (45%), Gaps = 9/136 (6%)
 Frame = +3

Query: 45  EYHSYVHGRLPY-DVIAADPQLAAALQSMPQRKI-------LFTNSDRAHMRRSLERLGL 200
           +Y++++   LP  D +  D +L   L ++ ++K+       LFTNS + H  R ++ LG+
Sbjct: 122 QYNTFIDDSLPLQDYLKPDWKLRELLINLKKKKLGKFDKLWLFTNSYKNHAIRCVKILGI 181

Query: 201 DEALFDGVVCFETMNPNLFGEXXXXXXXXXRPAVVLKPSVHAFATALRVAGTNP-RRTLF 377
            + LFDG+       P                  + KP    F TA   +G +      F
Sbjct: 182 AD-LFDGITYCHYDRP-------------IEEEFICKPDPKFFETAKLQSGLSSFANAWF 227

Query: 378 LDDNERNIASGKALGL 425
           +DDNE N+ S  ++G+
Sbjct: 228 IDDNESNVRSALSMGM 243



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>YAI5_SCHPO (Q09893) Hypothetical protein C24B11.05 in chromosome I|
          Length = 226

 Score = 38.5 bits (88), Expect = 0.010
 Identities = 35/140 (25%), Positives = 61/140 (43%), Gaps = 4/140 (2%)
 Frame = +3

Query: 15  IALGHDVHPDEYHSYVHGRLPYD-VIAADPQLAAALQSMPQRKI--LFTNSDRAHMRRSL 185
           + L H++   +Y   V   LP + VI  D  L   L  + ++    +FTN+   H  R L
Sbjct: 64  LVLHHEIDAVDYDQRVDQSLPLEKVIKKDEVLREMLLELRKKYKCWIFTNAYIVHANRVL 123

Query: 186 ERLGLDEALFDGVVCFETMNPNLFGEXXXXXXXXXRPAVVLKPSVHAFATALRVAG-TNP 362
           + LG+++  FDG+   +    +L                + KP    +   +R AG T+ 
Sbjct: 124 KYLGIEDC-FDGITYCDYNAKDL----------------IAKPMPEMYERVMREAGVTDK 166

Query: 363 RRTLFLDDNERNIASGKALG 422
            + +F+DD+  NI   +  G
Sbjct: 167 DKCIFVDDSYGNILGAREFG 186



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>PPAX_BACHD (Q9K6Y7) Pyrophosphatase ppaX (EC 3.6.1.1)|
          Length = 215

 Score = 37.7 bits (86), Expect = 0.016
 Identities = 26/107 (24%), Positives = 43/107 (40%)
 Frame = +3

Query: 144 LFTNSDRAHMRRSLERLGLDEALFDGVVCFETMNPNLFGEXXXXXXXXXRPAVVLKPSVH 323
           + T   R    + L+  GLDE  FD +V  + +                     +KP+  
Sbjct: 103 IVTTKIRETAMKGLKLFGLDE-FFDVIVALDDVEN-------------------VKPNPE 142

Query: 324 AFATALRVAGTNPRRTLFLDDNERNIASGKALGLRTALVGKRARSKE 464
               A+   G     T+ + DN  +I  GK  G++TA+VG   R ++
Sbjct: 143 PLEKAMNALGAKKEETIMVGDNSHDILGGKNAGVKTAVVGYAIRGED 189



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>YIHX_SHIFL (P0A8Y4) Phosphatase yihX (EC 3.1.3.-)|
          Length = 199

 Score = 34.7 bits (78), Expect = 0.14
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = +3

Query: 309 KPSVHAFATALRVAGTNPRRTLFLDDNERNIASGKALGLRTALV 440
           KP    +   L+  G +P  T+F DDN  NI     LG+ + LV
Sbjct: 141 KPEARIYQHVLQAEGFSPSDTVFFDDNADNIEGANQLGITSILV 184



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>YIHX_ECOLI (P0A8Y3) Phosphatase yihX (EC 3.1.3.-)|
          Length = 199

 Score = 34.7 bits (78), Expect = 0.14
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = +3

Query: 309 KPSVHAFATALRVAGTNPRRTLFLDDNERNIASGKALGLRTALV 440
           KP    +   L+  G +P  T+F DDN  NI     LG+ + LV
Sbjct: 141 KPEARIYQHVLQAEGFSPSDTVFFDDNADNIEGANQLGITSILV 184



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>GPH2_PSEAE (Q9HZ62) Phosphoglycolate phosphatase 2 (EC 3.1.3.18) (PGPase2)|
           (PGP 2)
          Length = 226

 Score = 33.5 bits (75), Expect = 0.31
 Identities = 17/44 (38%), Positives = 23/44 (52%)
 Frame = +3

Query: 309 KPSVHAFATALRVAGTNPRRTLFLDDNERNIASGKALGLRTALV 440
           KP       A    G +P R LF+ D+ R+I SG+  G +TA V
Sbjct: 146 KPDPEPLLLACSQLGIDPSRVLFIGDDLRDIESGRDAGTKTAAV 189



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>GPH_AQUAE (O67359) Phosphoglycolate phosphatase (EC 3.1.3.18) (PGPase) (PGP)|
          Length = 213

 Score = 32.7 bits (73), Expect = 0.53
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +3

Query: 309 KPSVHAFATALRVAGTNPRRTLFLDDNERNIASGKALGLRTAL 437
           KPS       L + G  P + L + D + +I +GK  G +TAL
Sbjct: 137 KPSPTPVLKTLEILGEEPEKALIVGDTDADIEAGKRAGTKTAL 179



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>GPH1_PSEAE (Q9S586) Phosphoglycolate phosphatase 1 (EC 3.1.3.18) (PGPase 1)|
           (PGP 1)
          Length = 272

 Score = 32.3 bits (72), Expect = 0.69
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +3

Query: 309 KPSVHAFATALRVAGTNPRRTLFLDDNERNIASGKALGLRTA 434
           KP   A    +++AG  P   LF+ D+  ++ + KA G+R A
Sbjct: 157 KPDPAALLFVMKMAGIEPEDALFVGDSRNDVLAAKAAGVRCA 198



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>PPAX_BACSU (Q9JMQ2) Pyrophosphatase ppaX (EC 3.6.1.1)|
          Length = 216

 Score = 30.4 bits (67), Expect = 2.6
 Identities = 15/52 (28%), Positives = 24/52 (46%)
 Frame = +3

Query: 309 KPSVHAFATALRVAGTNPRRTLFLDDNERNIASGKALGLRTALVGKRARSKE 464
           KP       AL+  G+ P   + + DN  ++ +GK  G +TA V    +  E
Sbjct: 141 KPDPEPVLLALKQLGSEPAEAIMVGDNYHDVLAGKNAGTKTAGVAWTIKGPE 192



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>CBBY_RHOCA (O33513) Protein cbbY|
          Length = 227

 Score = 30.4 bits (67), Expect = 2.6
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +3

Query: 309 KPSVHAFATALRVAGTNPRRTLFLDDNERNIASGKALGLRTAL 437
           KP+   +  AL+  G  P   L  +D+   +AS +A GLR  L
Sbjct: 152 KPAPDVYLRALQGLGLPPAACLAFEDSRAGLASARAAGLRVVL 194



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>PPAX_BACHK (Q6HBC8) Pyrophosphatase ppaX (EC 3.6.1.1)|
          Length = 216

 Score = 30.0 bits (66), Expect = 3.4
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = +3

Query: 306 LKPSVHAFATALRVAGTNPRRTLFLDDNERNIASGKALGLRTALV 440
           +KP       AL++    P   L + DN  +I  G+  G +TA V
Sbjct: 137 VKPHPEPLQKALQLLDAKPEEALMVGDNHHDIVGGQNAGTKTAAV 181



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>PPAX_BACC1 (Q72XV8) Pyrophosphatase ppaX (EC 3.6.1.1)|
          Length = 216

 Score = 30.0 bits (66), Expect = 3.4
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = +3

Query: 306 LKPSVHAFATALRVAGTNPRRTLFLDDNERNIASGKALGLRTALV 440
           +KP       AL++    P   L + DN  +I  G+  G +TA V
Sbjct: 137 VKPHPEPLQKALQLLDAKPEEALMVGDNHHDIVGGQNAGTKTAAV 181



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>PPAX_BACAN (Q6HQY9) Pyrophosphatase ppaX (EC 3.6.1.1)|
          Length = 216

 Score = 30.0 bits (66), Expect = 3.4
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = +3

Query: 306 LKPSVHAFATALRVAGTNPRRTLFLDDNERNIASGKALGLRTALV 440
           +KP       AL++    P   L + DN  +I  G+  G +TA V
Sbjct: 137 VKPHPEPLQKALQLLDAKPEEALMVGDNHHDIVGGQNAGTKTAAV 181



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>PPAX_BACCR (Q815I8) Pyrophosphatase ppaX (EC 3.6.1.1)|
          Length = 216

 Score = 29.6 bits (65), Expect = 4.4
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = +3

Query: 306 LKPSVHAFATALRVAGTNPRRTLFLDDNERNIASGKALGLRTALV 440
           +KP       AL +    P   L + DN  +I  G+  G +TA V
Sbjct: 137 VKPHPEPLQKALELLDAKPEEALMVGDNHHDIVGGQNAGTKTAAV 181



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>YRFG_SHIFL (P64637) Hypothetical protein yrfG|
          Length = 222

 Score = 29.3 bits (64), Expect = 5.8
 Identities = 29/108 (26%), Positives = 45/108 (41%)
 Frame = +3

Query: 114 ALQSMPQRKILFTNSDRAHMRRSLERLGLDEALFDGVVCFETMNPNLFGEXXXXXXXXXR 293
           AL++  +++IL TN+   ++   LE  GLD  L         ++ + FG           
Sbjct: 104 ALKASGKQRILLTNAHPHNLAVKLEHTGLDAHLD------LLLSTHTFGYPKEDQRLW-- 155

Query: 294 PAVVLKPSVHAFATALRVAGTNPRRTLFLDDNERNIASGKALGLRTAL 437
                    HA A A    G    RTLF+DD+E  + +    G+R  L
Sbjct: 156 ---------HAVAEA---TGLKAERTLFIDDSEAILDAAAQFGIRYCL 191



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>YRFG_ECOLI (P64636) Hypothetical protein yrfG|
          Length = 222

 Score = 29.3 bits (64), Expect = 5.8
 Identities = 29/108 (26%), Positives = 45/108 (41%)
 Frame = +3

Query: 114 ALQSMPQRKILFTNSDRAHMRRSLERLGLDEALFDGVVCFETMNPNLFGEXXXXXXXXXR 293
           AL++  +++IL TN+   ++   LE  GLD  L         ++ + FG           
Sbjct: 104 ALKASGKQRILLTNAHPHNLAVKLEHTGLDAHLD------LLLSTHTFGYPKEDQRLW-- 155

Query: 294 PAVVLKPSVHAFATALRVAGTNPRRTLFLDDNERNIASGKALGLRTAL 437
                    HA A A    G    RTLF+DD+E  + +    G+R  L
Sbjct: 156 ---------HAVAEA---TGLKAERTLFIDDSEAILDAAAQFGIRYCL 191



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>UTR4_YEAST (P32626) Protein UTR4 (Unknown transcript 4 protein)|
          Length = 241

 Score = 28.9 bits (63), Expect = 7.6
 Identities = 14/54 (25%), Positives = 22/54 (40%)
 Frame = +3

Query: 309 KPSVHAFATALRVAGTNPRRTLFLDDNERNIASGKALGLRTALVGKRARSKEAD 470
           K    ++A  LR  G      LFL DN   + +   +G+ T L  +   +   D
Sbjct: 175 KTETQSYANILRDIGAKASEVLFLSDNPLELDAAAGVGIATGLASRPGNAPVPD 228



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>CBBY_RHOSH (P95649) Protein cbbY|
          Length = 230

 Score = 28.5 bits (62), Expect = 9.9
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +3

Query: 309 KPSVHAFATALRVAGTNPRRTLFLDDNERNIASGKALGLR 428
           KPS   +  ALR     P R + L+D+   + + K  GLR
Sbjct: 151 KPSPDIYRLALRELDVPPERAVALEDSLNGLRAAKGAGLR 190


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,854,566
Number of Sequences: 219361
Number of extensions: 658947
Number of successful extensions: 3197
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 3164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3195
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3362826254
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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