Clone Name | basd2l05 |
---|---|
Clone Library Name | barley_pub |
>ref|NM_191799.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 798 Score = 61.9 bits (31), Expect = 9e-08 Identities = 40/43 (93%) Strand = Plus / Plus Query: 1 gtgatccactgccgttgggccatgcttggagcgctcggctgcg 43 |||||||||||||| ||||||||||| || ||||||||||||| Sbjct: 295 gtgatccactgccggtgggccatgctgggcgcgctcggctgcg 337
>gb|BC053854.1| Homo sapiens cDNA clone IMAGE:5194336, partial cds Length = 1044 Score = 61.9 bits (31), Expect = 9e-08 Identities = 40/43 (93%) Strand = Plus / Plus Query: 1 gtgatccactgccgttgggccatgcttggagcgctcggctgcg 43 |||||||||||||| ||||||||||| || ||||||||||||| Sbjct: 361 gtgatccactgccggtgggccatgctgggcgcgctcggctgcg 403
>gb|AY100470.1| Oryza sativa (indica cultivar-group) putative soluble starch synthase IV-1 gene, complete cds Length = 15000 Score = 61.9 bits (31), Expect = 9e-08 Identities = 40/43 (93%) Strand = Plus / Minus Query: 1 gtgatccactgccgttgggccatgcttggagcgctcggctgcg 43 |||||||||||||| ||||||||||| || ||||||||||||| Sbjct: 14379 gtgatccactgccggtgggccatgctgggcgcgctcggctgcg 14337
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 61.9 bits (31), Expect = 9e-08 Identities = 40/43 (93%) Strand = Plus / Plus Query: 1 gtgatccactgccgttgggccatgcttggagcgctcggctgcg 43 |||||||||||||| ||||||||||| || ||||||||||||| Sbjct: 30024632 gtgatccactgccggtgggccatgctgggcgcgctcggctgcg 30024674
>dbj|AP003292.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0690B02 Length = 153116 Score = 61.9 bits (31), Expect = 9e-08 Identities = 40/43 (93%) Strand = Plus / Plus Query: 1 gtgatccactgccgttgggccatgcttggagcgctcggctgcg 43 |||||||||||||| ||||||||||| || ||||||||||||| Sbjct: 20622 gtgatccactgccggtgggccatgctgggcgcgctcggctgcg 20664
>dbj|AK104176.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-301-C12, full insert sequence Length = 1055 Score = 61.9 bits (31), Expect = 9e-08 Identities = 40/43 (93%) Strand = Plus / Plus Query: 1 gtgatccactgccgttgggccatgcttggagcgctcggctgcg 43 |||||||||||||| ||||||||||| || ||||||||||||| Sbjct: 376 gtgatccactgccggtgggccatgctgggcgcgctcggctgcg 418
>dbj|AK103946.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-014-B02, full insert sequence Length = 1055 Score = 61.9 bits (31), Expect = 9e-08 Identities = 40/43 (93%) Strand = Plus / Plus Query: 1 gtgatccactgccgttgggccatgcttggagcgctcggctgcg 43 |||||||||||||| ||||||||||| || ||||||||||||| Sbjct: 376 gtgatccactgccggtgggccatgctgggcgcgctcggctgcg 418
>dbj|AK062725.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-106-D08, full insert sequence Length = 1057 Score = 61.9 bits (31), Expect = 9e-08 Identities = 40/43 (93%) Strand = Plus / Plus Query: 1 gtgatccactgccgttgggccatgcttggagcgctcggctgcg 43 |||||||||||||| ||||||||||| || ||||||||||||| Sbjct: 378 gtgatccactgccggtgggccatgctgggcgcgctcggctgcg 420
>dbj|AK058289.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-E06, full insert sequence Length = 1057 Score = 61.9 bits (31), Expect = 9e-08 Identities = 40/43 (93%) Strand = Plus / Plus Query: 1 gtgatccactgccgttgggccatgcttggagcgctcggctgcg 43 |||||||||||||| ||||||||||| || ||||||||||||| Sbjct: 378 gtgatccactgccggtgggccatgctgggcgcgctcggctgcg 420
>gb|U74295.1|OSU74295 Oryza sativa chlorophyll a/b binding protein (kcdl895) mRNA, complete cds Length = 1022 Score = 61.9 bits (31), Expect = 9e-08 Identities = 40/43 (93%) Strand = Plus / Plus Query: 1 gtgatccactgccgttgggccatgcttggagcgctcggctgcg 43 |||||||||||||| ||||||||||| || ||||||||||||| Sbjct: 337 gtgatccactgccggtgggccatgctgggcgcgctcggctgcg 379
>gb|AY389606.1| Hyacinthus orientalis chloroplast chlorophyll A-B binding protein 40 mRNA, complete cds Length = 859 Score = 54.0 bits (27), Expect = 2e-05 Identities = 39/43 (90%) Strand = Plus / Plus Query: 1 gtgatccactgccgttgggccatgcttggagcgctcggctgcg 43 |||||||||||||| ||||||||||| || || |||||||||| Sbjct: 352 gtgatccactgccggtgggccatgctgggtgctctcggctgcg 394
>emb|Y00379.1|ZMLHCP Maize mRNA for light-harvesting chlorophyll a/b binding protein LHCP Length = 967 Score = 54.0 bits (27), Expect = 2e-05 Identities = 39/43 (90%) Strand = Plus / Plus Query: 1 gtgatccactgccgttgggccatgcttggagcgctcggctgcg 43 |||||||||||||| ||||||||||| || |||||||| |||| Sbjct: 359 gtgatccactgccgctgggccatgctgggcgcgctcggttgcg 401
>emb|X13407.1|PTCAB Pinus thunbergii cab mRNA for light-harvesting chlorophyll a/b binding protein Length = 978 Score = 54.0 bits (27), Expect = 2e-05 Identities = 39/43 (90%) Strand = Plus / Plus Query: 1 gtgatccactgccgttgggccatgcttggagcgctcggctgcg 43 |||||||||||| | ||||||||| | |||||||||||||||| Sbjct: 347 gtgatccactgcagatgggccatgttgggagcgctcggctgcg 389
>emb|X14794.1|ZMCAB1 Maize cab-1 gene for chlorophyll a/b-binding protein Length = 2100 Score = 54.0 bits (27), Expect = 2e-05 Identities = 39/43 (90%) Strand = Plus / Plus Query: 1 gtgatccactgccgttgggccatgcttggagcgctcggctgcg 43 |||||||||| ||| ||||||||||| || ||||||||||||| Sbjct: 1177 gtgatccactcccgctgggccatgctcggcgcgctcggctgcg 1219
>gb|AY109324.1| Zea mays CL187_1 mRNA sequence Length = 2262 Score = 54.0 bits (27), Expect = 2e-05 Identities = 39/43 (90%) Strand = Plus / Plus Query: 1 gtgatccactgccgttgggccatgcttggagcgctcggctgcg 43 |||||||||| ||| ||||||||||| || ||||||||||||| Sbjct: 1307 gtgatccactcccgctgggccatgctgggcgcgctcggctgcg 1349
>gb|AF417304.1| Castanea sativa putative chlorophyll-A-B-binding protein mRNA, partial cds Length = 446 Score = 50.1 bits (25), Expect = 3e-04 Identities = 31/33 (93%) Strand = Plus / Plus Query: 1 gtgatccactgccgttgggccatgcttggagcg 33 ||||||||| |||| |||||||||||||||||| Sbjct: 381 gtgatccacagccgatgggccatgcttggagcg 413
>gb|AY219853.1| Nicotiana tabacum chlorophyll a/b binding protein mRNA, complete cds Length = 946 Score = 50.1 bits (25), Expect = 3e-04 Identities = 28/29 (96%) Strand = Plus / Plus Query: 1 gtgatccactgccgttgggccatgcttgg 29 |||||||| |||||||||||||||||||| Sbjct: 354 gtgatccattgccgttgggccatgcttgg 382
>emb|X58230.1|NTCAB36 Tobacco CAB36 gene for chlorophyll a/b binding protein Length = 1986 Score = 50.1 bits (25), Expect = 3e-04 Identities = 28/29 (96%) Strand = Plus / Plus Query: 1 gtgatccactgccgttgggccatgcttgg 29 |||||||| |||||||||||||||||||| Sbjct: 1029 gtgatccattgccgttgggccatgcttgg 1057
>emb|X02359.1|PECAB22L Petunia gene for chlorophyll a/b binding protein cab 22L Length = 1187 Score = 48.1 bits (24), Expect = 0.001 Identities = 30/32 (93%) Strand = Plus / Plus Query: 1 gtgatccactgccgttgggccatgcttggagc 32 |||||||||||| | ||||||||||||||||| Sbjct: 531 gtgatccactgcagatgggccatgcttggagc 562
>emb|X02356.1|PECAB91R Petunia gene for chlorophyll a/b binding protein cab 91R Length = 1173 Score = 48.1 bits (24), Expect = 0.001 Identities = 30/32 (93%) Strand = Plus / Plus Query: 1 gtgatccactgccgttgggccatgcttggagc 32 |||||||||||| | ||||||||||||||||| Sbjct: 531 gtgatccactgcagatgggccatgcttggagc 562
>emb|X02358.1|PECAB25 Petunia gene for chlorophyll a/b binding protein cab 25 Length = 1184 Score = 48.1 bits (24), Expect = 0.001 Identities = 30/32 (93%) Strand = Plus / Plus Query: 1 gtgatccactgccgttgggccatgcttggagc 32 |||||||||||| | ||||||||||||||||| Sbjct: 528 gtgatccactgcagatgggccatgcttggagc 559
>emb|X52744.1|NTCAB40 Tabacco Cab40 mRNA for major chlorophyll a/b binding protein Length = 1080 Score = 48.1 bits (24), Expect = 0.001 Identities = 30/32 (93%) Strand = Plus / Plus Query: 1 gtgatccactgccgttgggccatgcttggagc 32 |||||||||||| | ||||||||||||||||| Sbjct: 364 gtgatccactgcagatgggccatgcttggagc 395
>emb|X52741.1|NTCAB16 Tabacco Cab16 mRNA for major chlorophyll a/b binding protein Length = 1025 Score = 48.1 bits (24), Expect = 0.001 Identities = 30/32 (93%) Strand = Plus / Plus Query: 1 gtgatccactgccgttgggccatgcttggagc 32 |||||||||||| | ||||||||||||||||| Sbjct: 356 gtgatccactgcagatgggccatgcttggagc 387
>gb|M21398.1|TOBCABB Tobacco chlorophyll a/b-binding protein (Cab-E) gene, complete cds Length = 1815 Score = 48.1 bits (24), Expect = 0.001 Identities = 30/32 (93%) Strand = Plus / Plus Query: 1 gtgatccactgccgttgggccatgcttggagc 32 |||||||||||| | ||||||||||||||||| Sbjct: 1276 gtgatccactgcagatgggccatgcttggagc 1307
>dbj|AB012638.1| Nicotiana sylvestris Lhcb1*5, Lhcb1*6 genes for light harvesting chlorophyll a/b-binding protein, complete cds Length = 7299 Score = 48.1 bits (24), Expect = 0.001 Identities = 30/32 (93%) Strand = Plus / Minus Query: 1 gtgatccactgccgttgggccatgcttggagc 32 |||||||||||| | ||||||||||||||||| Sbjct: 2373 gtgatccactgcagatgggccatgcttggagc 2342 Score = 40.1 bits (20), Expect = 0.33 Identities = 29/32 (90%) Strand = Plus / Plus Query: 1 gtgatccactgccgttgggccatgcttggagc 32 |||||||||||| | ||||| ||||||||||| Sbjct: 4660 gtgatccactgcagatgggcaatgcttggagc 4691
>gb|AY389573.1| Hyacinthus orientalis chloroplast chlorophyll A-B binding protein 40 (LHCP) mRNA, partial cds Length = 712 Score = 46.1 bits (23), Expect = 0.005 Identities = 38/43 (88%) Strand = Plus / Plus Query: 1 gtgatccactgccgttgggccatgcttggagcgctcggctgcg 43 |||||||||||||| ||||| ||||| || || |||||||||| Sbjct: 256 gtgatccactgccggtgggcaatgctgggtgctctcggctgcg 298
>emb|X53398.1|ZMCABM7 Z.mays cab-m7 gene for light harvesting chlorophyll a/b binding protein Length = 2261 Score = 46.1 bits (23), Expect = 0.005 Identities = 38/43 (88%) Strand = Plus / Plus Query: 1 gtgatccactgccgttgggccatgcttggagcgctcggctgcg 43 |||||||||| ||| ||||||||||| || |||||||| |||| Sbjct: 1307 gtgatccactcccgctgggccatgctgggcgcgctcggttgcg 1349
>emb|X13908.1|OSCABR1 Rice cab1R gene for light harvesting chlorophyll a/b-binding protein Length = 1664 Score = 46.1 bits (23), Expect = 0.005 Identities = 38/43 (88%) Strand = Plus / Plus Query: 1 gtgatccactgccgttgggccatgcttggagcgctcggctgcg 43 |||||||||| ||| ||||| ||||| || ||||||||||||| Sbjct: 744 gtgatccactcccggtgggcgatgctgggcgcgctcggctgcg 786
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 46.1 bits (23), Expect = 0.005 Identities = 38/43 (88%) Strand = Plus / Plus Query: 1 gtgatccactgccgttgggccatgcttggagcgctcggctgcg 43 |||||||||| ||| ||||| ||||| || ||||||||||||| Sbjct: 10793279 gtgatccactcccggtgggcgatgctgggcgcgctcggctgcg 10793321
>dbj|AP005313.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0512H04 Length = 151049 Score = 46.1 bits (23), Expect = 0.005 Identities = 38/43 (88%) Strand = Plus / Plus Query: 1 gtgatccactgccgttgggccatgcttggagcgctcggctgcg 43 |||||||||| ||| ||||| ||||| || ||||||||||||| Sbjct: 17002 gtgatccactcccggtgggcgatgctgggcgcgctcggctgcg 17044
>dbj|AP005700.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBb0085I16 Length = 141701 Score = 46.1 bits (23), Expect = 0.005 Identities = 38/43 (88%) Strand = Plus / Plus Query: 1 gtgatccactgccgttgggccatgcttggagcgctcggctgcg 43 |||||||||| ||| ||||| ||||| || ||||||||||||| Sbjct: 129897 gtgatccactcccggtgggcgatgctgggcgcgctcggctgcg 129939
>emb|AJ309102.1|PPI309102 Pinus pinaster partial mRNA for putative chlorophyll A-B binding protein type I Length = 684 Score = 46.1 bits (23), Expect = 0.005 Identities = 38/43 (88%) Strand = Plus / Plus Query: 1 gtgatccactgccgttgggccatgcttggagcgctcggctgcg 43 |||||||||||| | ||||||||| | || ||||||||||||| Sbjct: 87 gtgatccactgcagatgggccatgttgggggcgctcggctgcg 129
>dbj|AK104350.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-G02, full insert sequence Length = 1013 Score = 46.1 bits (23), Expect = 0.005 Identities = 38/43 (88%) Strand = Plus / Plus Query: 1 gtgatccactgccgttgggccatgcttggagcgctcggctgcg 43 |||||||||| ||| ||||| ||||| || ||||||||||||| Sbjct: 347 gtgatccactcccggtgggcgatgctgggcgcgctcggctgcg 389
>dbj|AK104288.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-007-E05, full insert sequence Length = 1021 Score = 46.1 bits (23), Expect = 0.005 Identities = 38/43 (88%) Strand = Plus / Plus Query: 1 gtgatccactgccgttgggccatgcttggagcgctcggctgcg 43 |||||||||| ||| ||||| ||||| || ||||||||||||| Sbjct: 352 gtgatccactcccggtgggcgatgctgggcgcgctcggctgcg 394
>dbj|AK104281.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-006-D01, full insert sequence Length = 1056 Score = 46.1 bits (23), Expect = 0.005 Identities = 38/43 (88%) Strand = Plus / Plus Query: 1 gtgatccactgccgttgggccatgcttggagcgctcggctgcg 43 |||||||||| ||| ||||| ||||| || ||||||||||||| Sbjct: 354 gtgatccactcccggtgggcgatgctgggcgcgctcggctgcg 396
>dbj|AK060851.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-E08, full insert sequence Length = 1235 Score = 46.1 bits (23), Expect = 0.005 Identities = 38/43 (88%) Strand = Plus / Plus Query: 1 gtgatccactgccgttgggccatgcttggagcgctcggctgcg 43 |||||||||| ||| ||||| ||||| || ||||||||||||| Sbjct: 352 gtgatccactcccggtgggcgatgctgggcgcgctcggctgcg 394
>dbj|AK058305.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-H02, full insert sequence Length = 1045 Score = 46.1 bits (23), Expect = 0.005 Identities = 38/43 (88%) Strand = Plus / Plus Query: 1 gtgatccactgccgttgggccatgcttggagcgctcggctgcg 43 |||||||||| ||| ||||| ||||| || ||||||||||||| Sbjct: 352 gtgatccactcccggtgggcgatgctgggcgcgctcggctgcg 394
>emb|AJ635207.1| Triticum durum ssp. durum partial mRNA for putative chlorophyll a/b binding protein (cab gene) Length = 760 Score = 46.1 bits (23), Expect = 0.005 Identities = 32/35 (91%) Strand = Plus / Plus Query: 1 gtgatccactgccgttgggccatgcttggagcgct 35 |||||||||||||| ||||||||||| || ||||| Sbjct: 293 gtgatccactgccgatgggccatgctcggtgcgct 327
>gb|M10144.1|WHTCAB Wheat major chlorophyll a/b-binding protein gene, complete cds Length = 1191 Score = 46.1 bits (23), Expect = 0.005 Identities = 32/35 (91%) Strand = Plus / Plus Query: 1 gtgatccactgccgttgggccatgcttggagcgct 35 |||||||||||||| ||||||||||| || ||||| Sbjct: 498 gtgatccactgccgatgggccatgctcggtgcgct 532
>gb|M12152.1|LGIAB19A Lemna gibba chlorophyll a/b apoprotein gene, complete cds Length = 1913 Score = 46.1 bits (23), Expect = 0.005 Identities = 35/39 (89%) Strand = Plus / Plus Query: 4 atccactgccgttgggccatgcttggagcgctcggctgc 42 |||||| |||| ||||||||||| || |||||||||||| Sbjct: 1034 atccacagccggtgggccatgctcggcgcgctcggctgc 1072
>gb|DQ455591.1| Phaseolus vulgaris chloroplast chlorophyll a/b binding protein mRNA, partial cds; nuclear gene for chloroplast product Length = 404 Score = 44.1 bits (22), Expect = 0.021 Identities = 28/30 (93%) Strand = Plus / Plus Query: 13 cgttgggccatgcttggagcgctcggctgc 42 |||||||||||||||||||| || |||||| Sbjct: 130 cgttgggccatgcttggagcactgggctgc 159
>emb|X61915.1|PTCABP P.thunbergii cab gene Length = 5419 Score = 44.1 bits (22), Expect = 0.021 Identities = 37/42 (88%) Strand = Plus / Plus Query: 1 gtgatccactgccgttgggccatgcttggagcgctcggctgc 42 |||||||||||| | ||||||||| | ||||| ||||||||| Sbjct: 2566 gtgatccactgcagatgggccatgttgggagccctcggctgc 2607
>gb|AF458406.1|AF458406 Brassica oleracea chlorophyll a/b binding protein (CAB1) mRNA, complete cds Length = 980 Score = 44.1 bits (22), Expect = 0.021 Identities = 34/38 (89%) Strand = Plus / Plus Query: 4 atccactgccgttgggccatgcttggagcgctcggctg 41 ||||||||| | ||||||||||||||||| || ||||| Sbjct: 340 atccactgcagatgggccatgcttggagccctaggctg 377
>dbj|AP006706.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT09I23, TM0590a, complete sequence Length = 16141 Score = 44.1 bits (22), Expect = 0.021 Identities = 28/30 (93%) Strand = Plus / Minus Query: 13 cgttgggccatgcttggagcgctcggctgc 42 |||||||||||||||||||| || |||||| Sbjct: 11665 cgttgggccatgcttggagcactaggctgc 11636
>dbj|D00641.1|RICLHCP1 Oryza sativa (japonica cultivar-group) mRNA for type I light-harvesting chlorophyll a/b binding protein of photosystem II (LHCPII), complete cds Length = 1022 Score = 44.1 bits (22), Expect = 0.021 Identities = 37/42 (88%) Strand = Plus / Plus Query: 2 tgatccactgccgttgggccatgcttggagcgctcggctgcg 43 ||||||||| ||| ||||| ||||| || ||||||||||||| Sbjct: 334 tgatccactcccgatgggcgatgctgggcgcgctcggctgcg 375
>gb|AF039598.1| Prunus persica light harvesting chlorophyll A/B binding protein (Lhcb-Pp2) mRNA, complete cds Length = 955 Score = 42.1 bits (21), Expect = 0.082 Identities = 27/29 (93%) Strand = Plus / Plus Query: 1 gtgatccactgccgttgggccatgcttgg 29 ||||||||| |||| |||||||||||||| Sbjct: 295 gtgatccacagccgatgggccatgcttgg 323
>emb|Z35160.1|STCHLABP S.tuberosum gene for chlorophyll a/b binding protein type I Length = 3529 Score = 42.1 bits (21), Expect = 0.082 Identities = 27/29 (93%) Strand = Plus / Plus Query: 1 gtgatccactgccgttgggccatgcttgg 29 |||||||| || ||||||||||||||||| Sbjct: 2406 gtgatccattgtcgttgggccatgcttgg 2434
>emb|X04966.1|PHCAB37 Petunia Cab gene for chlorophyll a/b binding protein Length = 1470 Score = 42.1 bits (21), Expect = 0.082 Identities = 27/29 (93%) Strand = Plus / Plus Query: 1 gtgatccactgccgttgggccatgcttgg 29 |||||||| ||||||||||| |||||||| Sbjct: 643 gtgatccattgccgttgggcaatgcttgg 671
>gb|U73218.1|TAU73218 Triticum aestivum chlorophyll a/b-binding protein WCAB precursor (Wcab) mRNA, complete cds Length = 918 Score = 42.1 bits (21), Expect = 0.082 Identities = 27/29 (93%) Strand = Plus / Plus Query: 1 gtgatccactgccgttgggccatgcttgg 29 ||||||||||| || |||||||||||||| Sbjct: 307 gtgatccactgtcgctgggccatgcttgg 335
>gb|DQ252493.1| Solanum tuberosum clone 062G02 chlorophyll a-b binding protein 3C-like mRNA, complete cds Length = 1055 Score = 42.1 bits (21), Expect = 0.082 Identities = 27/29 (93%) Strand = Plus / Plus Query: 1 gtgatccactgccgttgggccatgcttgg 29 |||||||||||| | |||||||||||||| Sbjct: 336 gtgatccactgcagatgggccatgcttgg 364
>gb|M17558.1|TOMCAB4A Tomato Cab-4 gene encoding chlorophyll a/b-binding protein, complete cds Length = 895 Score = 42.1 bits (21), Expect = 0.082 Identities = 27/29 (93%) Strand = Plus / Plus Query: 1 gtgatccactgccgttgggccatgcttgg 29 ||||| || |||||||||||||||||||| Sbjct: 353 gtgattcattgccgttgggccatgcttgg 381
>gb|DQ124219.1| Fagus sylvatica putative chlorophyll a/b-binding protein mRNA, partial cds Length = 780 Score = 40.1 bits (20), Expect = 0.33 Identities = 29/32 (90%) Strand = Plus / Plus Query: 1 gtgatccactgccgttgggccatgcttggagc 32 |||||||||| | | ||||||||||||||||| Sbjct: 283 gtgatccactccagatgggccatgcttggagc 314
>emb|AJ843976.1| Plantago major partial mRNA for light harvesting protein 1 (lhc1 gene) Length = 688 Score = 40.1 bits (20), Expect = 0.33 Identities = 26/28 (92%) Strand = Plus / Plus Query: 16 tgggccatgcttggagcgctcggctgcg 43 ||||||||||||||||| ||||| |||| Sbjct: 202 tgggccatgcttggagcactcggatgcg 229
>gb|AC118345.1| Homo sapiens BAC clone RP11-34K14 from 2, complete sequence Length = 43708 Score = 40.1 bits (20), Expect = 0.33 Identities = 20/20 (100%) Strand = Plus / Plus Query: 6 ccactgccgttgggccatgc 25 |||||||||||||||||||| Sbjct: 6024 ccactgccgttgggccatgc 6043
>gb|DQ355993.1| Brassica napus chlorophyll a/b binding protein (LHB1B2) mRNA, partial cds Length = 226 Score = 40.1 bits (20), Expect = 0.33 Identities = 35/40 (87%) Strand = Plus / Plus Query: 4 atccactgccgttgggccatgcttggagcgctcggctgcg 43 ||||||||| | ||||||||||| ||||| || ||||||| Sbjct: 115 atccactgcagatgggccatgctcggagccctaggctgcg 154
>dbj|AB211497.1| Lemna paucicostata LpCAB1 mRNA for CAB homologue1, partial cds Length = 695 Score = 40.1 bits (20), Expect = 0.33 Identities = 26/28 (92%) Strand = Plus / Plus Query: 16 tgggccatgcttggagcgctcggctgcg 43 ||||||||||| || ||||||||||||| Sbjct: 221 tgggccatgctcggcgcgctcggctgcg 248
>emb|Z75663.1|AGCHLABBP A.graveolens mRNA for chlorophyll a/b binding protein Length = 963 Score = 40.1 bits (20), Expect = 0.33 Identities = 29/32 (90%) Strand = Plus / Plus Query: 1 gtgatccactgccgttgggccatgcttggagc 32 |||||||||| | | ||||||||||||||||| Sbjct: 334 gtgatccactccagatgggccatgcttggagc 365
>emb|X52742.1|NTCAB50 Tabacco Cab50 mRNA for major chlorophyll a/b binding protein Length = 964 Score = 40.1 bits (20), Expect = 0.33 Identities = 29/32 (90%) Strand = Plus / Plus Query: 1 gtgatccactgccgttgggccatgcttggagc 32 |||||||||||| | ||||| ||||||||||| Sbjct: 368 gtgatccactgcagatgggctatgcttggagc 399
>gb|M21397.1|TOBCABA Tobacco chlorophyll a/b-binding protein (Cab-C) gene, complete cds Length = 1240 Score = 40.1 bits (20), Expect = 0.33 Identities = 29/32 (90%) Strand = Plus / Plus Query: 1 gtgatccactgccgttgggccatgcttggagc 32 ||||||||||| | ||||||||||||||||| Sbjct: 737 gtgatccactgtagatgggccatgcttggagc 768
>gb|M16057.1|CUSLHCPA Cucumber LHCP mRNA encoding chlorophyll a/b-binding protein, partial cds Length = 878 Score = 40.1 bits (20), Expect = 0.33 Identities = 29/32 (90%) Strand = Plus / Plus Query: 1 gtgatccactgccgttgggccatgcttggagc 32 |||||||||| | | ||||||||||||||||| Sbjct: 265 gtgatccactccagatgggccatgcttggagc 296
>dbj|D14002.1|LAUCAB Lettuce mRNA for light-harvesting chlorophyll a/b-binding protein (LHCP), complete cds Length = 905 Score = 40.1 bits (20), Expect = 0.33 Identities = 35/40 (87%) Strand = Plus / Plus Query: 4 atccactgccgttgggccatgcttggagcgctcggctgcg 43 ||||||||| | ||||| ||||||||||| || ||||||| Sbjct: 345 atccactgcagatgggcaatgcttggagctcttggctgcg 384
>dbj|AB012641.1| Nicotiana sylvestris Lhcb1*9 gene for light harvesting chlorophyll a/b-binding protein, complete cds Length = 3386 Score = 40.1 bits (20), Expect = 0.33 Identities = 29/32 (90%) Strand = Plus / Plus Query: 1 gtgatccactgccgttgggccatgcttggagc 32 |||||||| ||| | ||||||||||||||||| Sbjct: 1751 gtgatccattgcagatgggccatgcttggagc 1782
>dbj|AB006081.1| Fagus crenata mRNA for chlorophyll a/b-binding protein, complete cds Length = 1010 Score = 40.1 bits (20), Expect = 0.33 Identities = 29/32 (90%) Strand = Plus / Plus Query: 1 gtgatccactgccgttgggccatgcttggagc 32 |||||||||| | | ||||||||||||||||| Sbjct: 339 gtgatccactccagatgggccatgcttggagc 370
>gb|AY818400.1| Manihot esculenta chloroplast chlorophyll A/B binding protein mRNA, partial cds; nuclear gene for chloroplast product Length = 732 Score = 38.2 bits (19), Expect = 1.3 Identities = 37/43 (86%) Strand = Plus / Plus Query: 1 gtgatccactgccgttgggccatgcttggagcgctcggctgcg 43 |||||||||||| | ||||| |||||||| || || ||||||| Sbjct: 229 gtgatccactgcagatgggctatgcttggtgcacttggctgcg 271
>gb|AY389553.1| Hyacinthus orientalis chloroplast chlorophyll A-B binding protein (CAB) mRNA, partial cds Length = 720 Score = 38.2 bits (19), Expect = 1.3 Identities = 37/43 (86%) Strand = Plus / Plus Query: 1 gtgatccactgccgttgggccatgcttggagcgctcggctgcg 43 |||||||||||| | ||||| ||||| || || |||||||||| Sbjct: 336 gtgatccactgcaggtgggcaatgctgggcgctctcggctgcg 378
>gb|AY389549.1| Hyacinthus orientalis chloroplast chlorophyll A-B binding protein 3C (LHCP) mRNA, partial cds Length = 661 Score = 38.2 bits (19), Expect = 1.3 Identities = 37/43 (86%) Strand = Plus / Plus Query: 1 gtgatccactgccgttgggccatgcttggagcgctcggctgcg 43 |||||||||||| | ||||| ||||| || || |||||||||| Sbjct: 171 gtgatccactgcaggtgggcaatgctgggcgctctcggctgcg 213
>gb|AF312227.1|AF312227 Citrus reticulata light-harvesting chlorophyll-binding protein mRNA, partial cds, nuclear gene for chloroplast product Length = 470 Score = 38.2 bits (19), Expect = 1.3 Identities = 37/43 (86%) Strand = Plus / Plus Query: 1 gtgatccactgccgttgggccatgcttggagcgctcggctgcg 43 ||||||||| || | ||||| ||||||||||| || ||||||| Sbjct: 85 gtgatccacagcagatgggcaatgcttggagctcttggctgcg 127
>gb|AF247178.1|AF247178 Picea glauca needle chlorophyll a/b-binding protein mRNA, complete cds; nuclear gene for chloroplast product Length = 1096 Score = 38.2 bits (19), Expect = 1.3 Identities = 37/43 (86%) Strand = Plus / Plus Query: 1 gtgatccactgccgttgggccatgcttggagcgctcggctgcg 43 ||||||||| || | ||||||||| | || ||||||||||||| Sbjct: 372 gtgatccacagcagatgggccatgttgggggcgctcggctgcg 414
>emb|X63205.1|ZMCAB48 Zea mays cab48 gene for chlorophyll a/b binding protein precursor Length = 2780 Score = 38.2 bits (19), Expect = 1.3 Identities = 22/23 (95%) Strand = Plus / Plus Query: 1 gtgatccactgccgttgggccat 23 |||||||||||||| |||||||| Sbjct: 2218 gtgatccactgccgctgggccat 2240
>emb|X79277.1|LTLHAB L.temulentum lhaB mRNA Length = 1026 Score = 38.2 bits (19), Expect = 1.3 Identities = 25/27 (92%) Strand = Plus / Plus Query: 7 cactgccgttgggccatgcttggagcg 33 |||||||| ||||| |||||||||||| Sbjct: 319 cactgccggtgggcgatgcttggagcg 345
>gb|AY106149.1| Zea mays PCO102434 mRNA sequence Length = 1081 Score = 38.2 bits (19), Expect = 1.3 Identities = 22/23 (95%) Strand = Plus / Plus Query: 6 ccactgccgttgggccatgcttg 28 ||||||||| ||||||||||||| Sbjct: 334 ccactgccgctgggccatgcttg 356
>emb|CR954246.1| Pseudoalteromonas haloplanktis str. TAC125 chromosome I, complete sequence Length = 3214944 Score = 36.2 bits (18), Expect = 5.1 Identities = 21/22 (95%) Strand = Plus / Plus Query: 6 ccactgccgttgggccatgctt 27 ||||||| |||||||||||||| Sbjct: 1405635 ccactgctgttgggccatgctt 1405656
>gb|AC124672.9| Mus musculus chromosome 1, clone RP23-328G14, complete sequence Length = 249008 Score = 36.2 bits (18), Expect = 5.1 Identities = 18/18 (100%) Strand = Plus / Minus Query: 1 gtgatccactgccgttgg 18 |||||||||||||||||| Sbjct: 13183 gtgatccactgccgttgg 13166
>gb|DQ018375.1| Pinus gerardiana chloroplast putative light harvesting chlorophyll a/b binding protein (ifg1934) gene, partial cds; nuclear gene for chloroplast product Length = 760 Score = 36.2 bits (18), Expect = 5.1 Identities = 24/26 (92%) Strand = Plus / Plus Query: 1 gtgatccactgccgttgggccatgct 26 |||||||||||||| ||||| ||||| Sbjct: 315 gtgatccactgccggtgggcaatgct 340
>gb|AY617095.1| Pinus nelsonii chloroplast light harvesting chlorophyll a/b binding protein (ifg1934) gene, partial cds; nuclear gene for chloroplast product Length = 770 Score = 36.2 bits (18), Expect = 5.1 Identities = 24/26 (92%) Strand = Plus / Plus Query: 1 gtgatccactgccgttgggccatgct 26 |||||||||||||| ||||| ||||| Sbjct: 315 gtgatccactgccggtgggcaatgct 340
>gb|AY617094.1| Pinus longaeva chloroplast light harvesting chlorophyll a/b binding protein (ifg1934) gene, partial cds; nuclear gene for chloroplast product Length = 759 Score = 36.2 bits (18), Expect = 5.1 Identities = 24/26 (92%) Strand = Plus / Plus Query: 1 gtgatccactgccgttgggccatgct 26 |||||||||||||| ||||| ||||| Sbjct: 304 gtgatccactgccggtgggcaatgct 329
>gb|AY617093.1| Pinus remota chloroplast light harvesting chlorophyll a/b binding protein (ifg1934) gene, partial cds; nuclear gene for chloroplast product Length = 770 Score = 36.2 bits (18), Expect = 5.1 Identities = 24/26 (92%) Strand = Plus / Plus Query: 1 gtgatccactgccgttgggccatgct 26 |||||||||||||| ||||| ||||| Sbjct: 315 gtgatccactgccggtgggcaatgct 340
>gb|AY617092.1| Pinus monophylla chloroplast light harvesting chlorophyll a/b binding protein (ifg1934) gene, partial cds; nuclear gene for chloroplast product Length = 770 Score = 36.2 bits (18), Expect = 5.1 Identities = 24/26 (92%) Strand = Plus / Plus Query: 1 gtgatccactgccgttgggccatgct 26 |||||||||||||| ||||| ||||| Sbjct: 315 gtgatccactgccggtgggcaatgct 340
>gb|AY617086.1| Pinus roxburghii chloroplast light harvesting chlorophyll a/b binding protein (ifg1934) gene, partial cds; nuclear gene for chloroplast product Length = 770 Score = 36.2 bits (18), Expect = 5.1 Identities = 24/26 (92%) Strand = Plus / Plus Query: 1 gtgatccactgccgttgggccatgct 26 |||||||||||||| ||||| ||||| Sbjct: 315 gtgatccactgccggtgggcaatgct 340
>gb|AY617085.1| Pinus merkusii chloroplast light harvesting chlorophyll a/b binding protein (ifg1934) gene, partial cds; nuclear gene for chloroplast product Length = 770 Score = 36.2 bits (18), Expect = 5.1 Identities = 24/26 (92%) Strand = Plus / Plus Query: 1 gtgatccactgccgttgggccatgct 26 |||||||||||||| ||||| ||||| Sbjct: 315 gtgatccactgccggtgggcaatgct 340
>gb|AY617083.1| Pinus radiata chloroplast light harvesting chlorophyll a/b binding protein (ifg1934) gene, partial cds; nuclear gene for chloroplast product Length = 770 Score = 36.2 bits (18), Expect = 5.1 Identities = 24/26 (92%) Strand = Plus / Plus Query: 1 gtgatccactgccgttgggccatgct 26 |||||||||||||| ||||| ||||| Sbjct: 315 gtgatccactgccggtgggcaatgct 340
>gb|AY617082.1| Pinus ponderosa chloroplast light harvesting chlorophyll a/b binding protein (ifg1934) gene, partial cds; nuclear gene for chloroplast product Length = 770 Score = 36.2 bits (18), Expect = 5.1 Identities = 24/26 (92%) Strand = Plus / Plus Query: 1 gtgatccactgccgttgggccatgct 26 |||||||||||||| ||||| ||||| Sbjct: 315 gtgatccactgccggtgggcaatgct 340
>gb|AY617081.1| Pinus echinata chloroplast light harvesting chlorophyll a/b binding protein (ifg1934) gene, partial cds; nuclear gene for chloroplast product Length = 762 Score = 36.2 bits (18), Expect = 5.1 Identities = 24/26 (92%) Strand = Plus / Plus Query: 1 gtgatccactgccgttgggccatgct 26 |||||||||||||| ||||| ||||| Sbjct: 315 gtgatccactgccggtgggcaatgct 340
>gb|AC112236.3| Homo sapiens BAC clone RP11-308D13 from 4, complete sequence Length = 160615 Score = 36.2 bits (18), Expect = 5.1 Identities = 21/22 (95%) Strand = Plus / Minus Query: 21 catgcttggagcgctcggctgc 42 |||||||||||| ||||||||| Sbjct: 113946 catgcttggagccctcggctgc 113925
>gb|S73603.1| Pinus thunbergii chlorophyll a/b-binding protein (LHCPII) mRNA, complete cds Length = 998 Score = 36.2 bits (18), Expect = 5.1 Identities = 24/26 (92%) Strand = Plus / Plus Query: 1 gtgatccactgccgttgggccatgct 26 |||||||||||||| ||||| ||||| Sbjct: 361 gtgatccactgccggtgggcaatgct 386
>gb|AF139465.2|AF139465 Vigna radiata LHCII type III chlorophyll a/b binding protein (CipLhcb3) mRNA, complete cds; nuclear gene for chloroplast product Length = 1047 Score = 36.2 bits (18), Expect = 5.1 Identities = 27/30 (90%) Strand = Plus / Plus Query: 13 cgttgggccatgcttggagcgctcggctgc 42 |||||||||||||| ||||| || |||||| Sbjct: 374 cgttgggccatgctcggagccctgggctgc 403
>emb|X14506.1|PSCABIIB Pinus sylvestris cab II/1B mRNA for chlorophyll a/b-binding protein Length = 1006 Score = 36.2 bits (18), Expect = 5.1 Identities = 24/26 (92%) Strand = Plus / Plus Query: 1 gtgatccactgccgttgggccatgct 26 |||||||||||||| ||||| ||||| Sbjct: 370 gtgatccactgccggtgggcaatgct 395
>gb|AC132387.4| Mus musculus BAC clone RP23-440M14 from 1, complete sequence Length = 193449 Score = 36.2 bits (18), Expect = 5.1 Identities = 18/18 (100%) Strand = Plus / Minus Query: 1 gtgatccactgccgttgg 18 |||||||||||||||||| Sbjct: 145724 gtgatccactgccgttgg 145707
>dbj|AB012639.1| Nicotiana sylvestris Lhcb1*7 gene for light harvesting chlorophyll a/b-binding protein, complete cds Length = 3663 Score = 36.2 bits (18), Expect = 5.1 Identities = 24/26 (92%) Strand = Plus / Plus Query: 7 cactgccgttgggccatgcttggagc 32 |||||| | ||||||||||||||||| Sbjct: 2852 cactgcagatgggccatgcttggagc 2877 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 154,540 Number of Sequences: 3902068 Number of extensions: 154540 Number of successful extensions: 40452 Number of sequences better than 10.0: 89 Number of HSP's better than 10.0 without gapping: 89 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 40325 Number of HSP's gapped (non-prelim): 127 length of query: 43 length of database: 17,233,045,268 effective HSP length: 20 effective length of query: 23 effective length of database: 17,155,003,908 effective search space: 394565089884 effective search space used: 394565089884 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 18 (36.2 bits)