ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd2k24 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP000942.6| Homo sapiens genomic DNA, chromosome 11 clone:RP11-864G5, complete sequence Length = 185984 Score = 46.1 bits (23), Expect = 0.099 Identities = 26/27 (96%) Strand = Plus / Minus Query: 175 aagaagaaaaatctgacataaacaacc 201 |||||||||||||||| |||||||||| Sbjct: 163473 aagaagaaaaatctgatataaacaacc 163447
>dbj|AP001830.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-315O6, complete sequence Length = 214483 Score = 46.1 bits (23), Expect = 0.099 Identities = 26/27 (96%) Strand = Plus / Minus Query: 175 aagaagaaaaatctgacataaacaacc 201 |||||||||||||||| |||||||||| Sbjct: 39418 aagaagaaaaatctgatataaacaacc 39392
>ref|NM_128940.2| Arabidopsis thaliana SPL3 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 3); transcription factor AT2G33810 (SPL3) mRNA, complete cds Length = 981 Score = 44.1 bits (22), Expect = 0.39 Identities = 25/26 (96%) Strand = Plus / Plus Query: 156 gatgaagatacttctgaagaagaaga 181 ||||||||||||| |||||||||||| Sbjct: 426 gatgaagatacttttgaagaagaaga 451
>gb|AC091561.4| Homo sapiens chromosome 8, clone RP11-388G22, complete sequence Length = 191037 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Minus Query: 285 gaaaaagaacaaattgcaaaac 306 |||||||||||||||||||||| Sbjct: 89725 gaaaaagaacaaattgcaaaac 89704
>gb|AC090796.13| Homo sapiens chromosome 8, clone RP11-246K15, complete sequence Length = 168055 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Minus Query: 285 gaaaaagaacaaattgcaaaac 306 |||||||||||||||||||||| Sbjct: 9183 gaaaaagaacaaattgcaaaac 9162
>gb|U78721.3| Arabidopsis thaliana chromosome 2 clone T1B8 map TEn5, complete sequence Length = 114144 Score = 44.1 bits (22), Expect = 0.39 Identities = 25/26 (96%) Strand = Plus / Plus Query: 156 gatgaagatacttctgaagaagaaga 181 ||||||||||||| |||||||||||| Sbjct: 58478 gatgaagatacttttgaagaagaaga 58503
>gb|AC099730.2| Homo sapiens chromosome 11, clone RP11-48F13, complete sequence Length = 169549 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Plus Query: 169 ctgaagaagaagaaaaatctga 190 |||||||||||||||||||||| Sbjct: 78504 ctgaagaagaagaaaaatctga 78525
>gb|AC091146.8| Homo sapiens chromosome 11, clone RP11-884J20, complete sequence Length = 138053 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Minus Query: 169 ctgaagaagaagaaaaatctga 190 |||||||||||||||||||||| Sbjct: 36179 ctgaagaagaagaaaaatctga 36158
>emb|BX824451.1|CNS0A6PL Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH4ZA11 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 951 Score = 44.1 bits (22), Expect = 0.39 Identities = 25/26 (96%) Strand = Plus / Minus Query: 156 gatgaagatacttctgaagaagaaga 181 ||||||||||||| |||||||||||| Sbjct: 533 gatgaagatacttttgaagaagaaga 508
>gb|AC074088.5| Homo sapiens BAC clone RP11-122B24 from 4, complete sequence Length = 69463 Score = 44.1 bits (22), Expect = 0.39 Identities = 25/26 (96%) Strand = Plus / Plus Query: 175 aagaagaaaaatctgacataaacaac 200 |||||||||||||| ||||||||||| Sbjct: 31125 aagaagaaaaatcttacataaacaac 31150
>gb|BT005443.1| Arabidopsis thaliana clone U50647 putative squamosa-promoter binding protein (At2g33810) mRNA, complete cds Length = 427 Score = 44.1 bits (22), Expect = 0.39 Identities = 25/26 (96%) Strand = Plus / Plus Query: 156 gatgaagatacttctgaagaagaaga 181 ||||||||||||| |||||||||||| Sbjct: 85 gatgaagatacttttgaagaagaaga 110
>gb|AY084312.1| Arabidopsis thaliana clone 10375 mRNA, complete sequence Length = 653 Score = 44.1 bits (22), Expect = 0.39 Identities = 25/26 (96%) Strand = Plus / Plus Query: 156 gatgaagatacttctgaagaagaaga 181 ||||||||||||| |||||||||||| Sbjct: 159 gatgaagatacttttgaagaagaaga 184
>dbj|AK118179.1| Arabidopsis thaliana At2g33810 mRNA for putative squamosa-promoter binding protein, complete cds, clone: RAFL19-50-A02 Length = 758 Score = 44.1 bits (22), Expect = 0.39 Identities = 25/26 (96%) Strand = Plus / Plus Query: 156 gatgaagatacttctgaagaagaaga 181 ||||||||||||| |||||||||||| Sbjct: 203 gatgaagatacttttgaagaagaaga 228
>emb|AJ242959.1|ATH242959 Arabidopsis thaliana mRNA for Squamosa promoter binding protein-like 3 (SPL3 gene) Length = 614 Score = 44.1 bits (22), Expect = 0.39 Identities = 25/26 (96%) Strand = Plus / Plus Query: 156 gatgaagatacttctgaagaagaaga 181 ||||||||||||| |||||||||||| Sbjct: 109 gatgaagatacttttgaagaagaaga 134
>emb|Y09427.1|ATSPL3 A.thaliana mRNA for squamosa-promoter binding protein like 3 Length = 624 Score = 44.1 bits (22), Expect = 0.39 Identities = 25/26 (96%) Strand = Plus / Plus Query: 156 gatgaagatacttctgaagaagaaga 181 ||||||||||||| |||||||||||| Sbjct: 109 gatgaagatacttttgaagaagaaga 134
>emb|AJ011633.1|ATH011633 Arabidopsis thaliana (ecotype Landsberg erecta) mRNA for squamosa promoter binding protein-like 3 Length = 632 Score = 44.1 bits (22), Expect = 0.39 Identities = 25/26 (96%) Strand = Plus / Plus Query: 156 gatgaagatacttctgaagaagaaga 181 ||||||||||||| |||||||||||| Sbjct: 109 gatgaagatacttttgaagaagaaga 134
>emb|AJ011627.1|ATH011627 Arabidopsis thaliana (ecotype Columbia) spl3 gene, exons 1-2 Length = 1329 Score = 44.1 bits (22), Expect = 0.39 Identities = 25/26 (96%) Strand = Plus / Plus Query: 156 gatgaagatacttctgaagaagaaga 181 ||||||||||||| |||||||||||| Sbjct: 408 gatgaagatacttttgaagaagaaga 433
>dbj|AP002768.3| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-673F18, complete sequence Length = 186084 Score = 44.1 bits (22), Expect = 0.39 Identities = 28/30 (93%) Strand = Plus / Minus Query: 270 gatttatcacgaagagaaaaagaacaaatt 299 |||||||||| ||||| ||||||||||||| Sbjct: 9558 gatttatcacaaagagcaaaagaacaaatt 9529
>gb|AC147312.3| Pan troglodytes BAC clone RP43-50K12 from 7, complete sequence Length = 214157 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 273 ttatcacgaagagaaaaagaacaaa 297 ||||||||||||| ||||||||||| Sbjct: 194878 ttatcacgaagagcaaaagaacaaa 194902
>gb|AC147020.2| Mus musculus BAC clone RP23-267A11 from chromosome 18, complete sequence Length = 204727 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 166 cttctgaagaagaagaaaaat 186 ||||||||||||||||||||| Sbjct: 78942 cttctgaagaagaagaaaaat 78922
>gb|DQ461756.1| Lacerta laevis strain JN1 cytochrome b (cytb) gene, partial cds; mitochondrial Length = 1143 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 33 agcctgcctcgtggaggaaaa 53 ||||||||||||||||||||| Sbjct: 616 agcctgcctcgtggaggaaaa 596
>gb|AC124168.3| Mus musculus BAC clone RP23-143G9 from chromosome 18, complete sequence Length = 203187 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 166 cttctgaagaagaagaaaaat 186 ||||||||||||||||||||| Sbjct: 4015 cttctgaagaagaagaaaaat 3995
>gb|AC006010.2| Homo sapiens PAC clone RP5-865F17 from 7, complete sequence Length = 114631 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 273 ttatcacgaagagaaaaagaacaaa 297 ||||||||||||| ||||||||||| Sbjct: 13739 ttatcacgaagagcaaaagaacaaa 13715
>ref|XM_673162.1| Plasmodium berghei strain ANKA hypothetical protein (PB000514.00.0) partial mRNA Length = 4395 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 165 acttctgaagaagaagaaaaa 185 ||||||||||||||||||||| Sbjct: 223 acttctgaagaagaagaaaaa 243
>emb|AL355355.25| Human DNA sequence from clone RP11-730A19 on chromosome 10 Contains the 5' end of a novel gene (DKFZP761F241) (FLJ20925 FLJ38473), a ribosomal protein L5 (RPL5) pseudogene, the OPTN gene for optineurin, a small nuclear ribonucleoprotein polypeptide G (SNRPG) pseudogene, a pseudogene similar to part of COX10 homolog, cytochrome c oxidase assembly protein heme A: farnesyltransferase (yeast) (COX10), a novel pseudogene (FLJ10648 KIAA1525), a ribosomal protein L36A (RPL36A) pseudogene, the 5' end of the MCM10 gene for MCM10 minichromosome maintenance deficient 10 (S. cerevisiae), a pseudogene similar to part of chromodomain protein Y chromosome 1 (CDY1) and two CpG islands, complete sequence Length = 196203 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 271 atttatcacgaagagaaaaagaaca 295 ||||||||| ||||||||||||||| Sbjct: 37076 atttatcacaaagagaaaaagaaca 37100
>emb|AL139005.12| Human DNA sequence from clone RP11-95G6 on chromosome 13 Contains the 5' end of the FLT1 gene for fms-related tyrosine kinase 1 (vascular endothelial growth factor/vascular permeability factor receptor) and a CpG island, complete sequence Length = 102119 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 219 aaaacgaaaaaagcatcacagttag 243 |||||||||| |||||||||||||| Sbjct: 3986 aaaacgaaaatagcatcacagttag 4010
>emb|AL929346.5| Zebrafish DNA sequence from clone DKEY-38P12, complete sequence Length = 232537 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 176 agaagaaaaatctgacataaa 196 ||||||||||||||||||||| Sbjct: 188529 agaagaaaaatctgacataaa 188549
>emb|AL731820.14| Mouse DNA sequence from clone RP23-135H19 on chromosome X, complete sequence Length = 168773 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 280 gaagagaaaaagaacaaattgcaaaacag 308 |||||||||||||| ||| |||||||||| Sbjct: 58989 gaagagaaaaagaaaaaaatgcaaaacag 59017
>gb|AY178864.1| Adiantum capillus-veneris chloroplast, complete genome Length = 150568 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 277 cacgaagagaaaaagaacaaattg 300 ||||||| |||||||||||||||| Sbjct: 24493 cacgaagcgaaaaagaacaaattg 24470
>ref|XM_550574.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1087 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 360 gcaagagcagatcttgctcggctt 383 ||||||||||||||||||| |||| Sbjct: 113 gcaagagcagatcttgctctgctt 136
>ref|NG_002392.2| Homo sapiens major histocompatibility complex, class II, DR52 haplotype (DR52) on chromosome 6 Length = 139182 Score = 40.1 bits (20), Expect = 6.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 270 gatttatcacgaagagaaaaagaacaaa 297 ||||||||| |||||| ||||||||||| Sbjct: 82343 gatttatcatgaagagcaaaagaacaaa 82316
>gb|AC150561.4| Bos taurus BAC CH240-184G17 (Children's Hospital Oakland Research Institute Bovine BAC Library (male)) complete sequence Length = 227834 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 281 aagagaaaaagaacaaattgcaaa 304 ||||||||||||||| |||||||| Sbjct: 22668 aagagaaaaagaacacattgcaaa 22691
>gb|AC144702.2| Danio rerio clone CH211-138D14, complete sequence Length = 192101 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 166 cttctgaagaagaagaaaaa 185 |||||||||||||||||||| Sbjct: 19889 cttctgaagaagaagaaaaa 19870
>gb|AE017244.1| Mycoplasma hyopneumoniae 7448, complete genome Length = 920079 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 286 aaaaagaacaaattgcaaaa 305 |||||||||||||||||||| Sbjct: 182964 aaaaagaacaaattgcaaaa 182983
>gb|AE017243.1| Mycoplasma hyopneumoniae J, complete genome Length = 897405 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 286 aaaaagaacaaattgcaaaa 305 |||||||||||||||||||| Sbjct: 175651 aaaaagaacaaattgcaaaa 175670
>ref|XM_449281.1| Candida glabrata CBS138, CAGL0L11814g partial mRNA Length = 4731 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 282 agagaaaaagaacaaattgcaaaa 305 |||||||||||| ||||||||||| Sbjct: 2128 agagaaaaagaagaaattgcaaaa 2151
>gb|AF483052.1| Boltenia villosa HASP protein-like protein (hasp) mRNA, partial cds Length = 183 Score = 40.1 bits (20), Expect = 6.1 Identities = 47/56 (83%) Strand = Plus / Plus Query: 357 gaagcaagagcagatcttgctcggcttgccattattcgtaaacaaagagaggaagc 412 ||||||||||| |||||||| || || || ||| || | |||||| |||||||||| Sbjct: 103 gaagcaagagccgatcttgcacgtctagcgattgttaggaaacaacgagaggaagc 158
>ref|XM_725707.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY02855) partial mRNA Length = 4050 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 211 ttataaataaaacgaaaaaa 230 |||||||||||||||||||| Sbjct: 2248 ttataaataaaacgaaaaaa 2229
>ref|XM_722797.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY07098) partial mRNA Length = 3213 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 286 aaaaagaacaaattgcaaaa 305 |||||||||||||||||||| Sbjct: 2148 aaaaagaacaaattgcaaaa 2167
>ref|XM_671457.1| Plasmodium berghei strain ANKA phosphatidylinositol 4-kinase, (PB001191.02.0) partial mRNA Length = 2382 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 165 acttctgaagaagaagaaaa 184 |||||||||||||||||||| Sbjct: 2332 acttctgaagaagaagaaaa 2351
>ref|XM_673521.1| Plasmodium berghei strain ANKA hypothetical protein (PB001173.02.0) partial mRNA Length = 1638 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 165 acttctgaagaagaagaaaa 184 |||||||||||||||||||| Sbjct: 85 acttctgaagaagaagaaaa 104
>gb|AC146573.21| Medicago truncatula clone mth2-145j1, complete sequence Length = 128992 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 167 ttctgaagaagaagaaaaatctga 190 |||||||||||||||| ||||||| Sbjct: 39469 ttctgaagaagaagaagaatctga 39492
>gb|AC163391.4| Mus musculus chromosome 3, clone RP23-173N16, complete sequence Length = 187855 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 171 gaagaagaagaaaaatctga 190 |||||||||||||||||||| Sbjct: 112490 gaagaagaagaaaaatctga 112471
>emb|CR457452.12| Zebrafish DNA sequence from clone DKEY-52H10 in linkage group 8, complete sequence Length = 232104 Score = 40.1 bits (20), Expect = 6.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 331 aacttcatgcccaaggtaaaacagatga 358 ||||||||||| || ||||||||||||| Sbjct: 15385 aacttcatgccaaatgtaaaacagatga 15412
>emb|Z84814.1|HS172K2 Human DNA sequence from clone RP1-172K2 on chromosome 6p21.1-21.3 Contains the HLA-DRB3, HLA-DRB9 and HLA-DRA genes for major histocompatibility complex class II DR beta 3*01012, beta 9 (pseudogene) and alpha and the 5' end of the BTNL2 gene encoding MHC class II associated butyrophilin-like 2. Contains a CpG island, ESTs, STSs and GSSs, complete sequence Length = 131234 Score = 40.1 bits (20), Expect = 6.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 270 gatttatcacgaagagaaaaagaacaaa 297 ||||||||| |||||| ||||||||||| Sbjct: 17122 gatttatcatgaagagcaaaagaacaaa 17149
>emb|AL929581.5| Human DNA sequence from clone DAQB-97F8 on chromosome 6 Contains the 5' end of the HLA-DRB9 pseudogene for major histocompatibility complex, class II, DR beta 9, the HLA-DRB3 gene for major histocompatibility complex, class II DR beta 3, the HLA-DRB2 pseudogene for major histocompatibility complex, class II, DR beta 2, the HLA-DRB1 gene for major histocompatibility complex, class II, DR beta 1and one CpG island, complete sequence Length = 118771 Score = 40.1 bits (20), Expect = 6.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 270 gatttatcacgaagagaaaaagaacaaa 297 ||||||||| |||||| ||||||||||| Sbjct: 44859 gatttatcatgaagagcaaaagaacaaa 44832
>emb|AL662842.3| Human DNA sequence from clone XXbac-181I15 on chromosome 6 contains the HLA-DRB3 gene for major histocompatibility complex, class II, DR beta 3, a major histocompatibility complex, class II, DR beta pseudogene, the HLA-DRB1 gene for major histocompatibility complex, class II, DR beta 1 and one CpG island, complete sequence Length = 130819 Score = 40.1 bits (20), Expect = 6.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 270 gatttatcacgaagagaaaaagaacaaa 297 ||||||||| |||||| ||||||||||| Sbjct: 34194 gatttatcatgaagagcaaaagaacaaa 34167
>emb|AL512323.8| Human DNA sequence from clone RP13-445B20 on chromosome 6, complete sequence Length = 205043 Score = 40.1 bits (20), Expect = 6.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 270 gatttatcacgaagagaaaaagaacaaa 297 |||||||||| ||||| ||||||||||| Sbjct: 112304 gatttatcacaaagagcaaaagaacaaa 112331
>emb|AL359757.21| Human DNA sequence from clone RP11-165I9 on chromosome 13q12.11-12.3 Contains the PABPC3 gene for poly(A) binding protein, cytoplasmic 3, the gene for a novel protein (FLJ30487), a pseudogene similar to part of 60S ribosomal protein L23a (RPL23A), 4 novel genes and 4 CpG islands, complete sequence Length = 187066 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 167 ttctgaagaagaagaaaaatctga 190 |||||||||||||||||| ||||| Sbjct: 20906 ttctgaagaagaagaaaattctga 20929
>emb|AL357793.6| Human DNA sequence from clone RP11-98G13 on chromosome 1 Contains a novel gene and part of a novel gene, complete sequence Length = 145630 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 178 aagaaaaatctgacataaacaacc 201 ||||||||||||| |||||||||| Sbjct: 75638 aagaaaaatctgaaataaacaacc 75615
>emb|AL354825.10| Human DNA sequence from clone RP11-303J13 on chromosome 13 Contains a CpG island, complete sequence Length = 82194 Score = 40.1 bits (20), Expect = 6.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 270 gatttatcacgaagagaaaaagaacaaa 297 |||||||||||||||| |||||||||| Sbjct: 57767 gatttatcacgaagagcgaaagaacaaa 57740
>emb|AL139331.19| Human DNA sequence from clone RP11-328M4 on chromosome 6 Contains a novel gene, the FOXP4 gene for forkhead box P4 and five CpG islands, complete sequence Length = 180547 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 171 gaagaagaagaaaaatctga 190 |||||||||||||||||||| Sbjct: 51913 gaagaagaagaaaaatctga 51932
>emb|AL137059.20| Human DNA sequence from clone RP11-125I23 on chromosome 13 Contains the MTIF3 gene for mitochondrial translational initiation factor 3, the GTF3A gene for general transcription factor IIIA (AP2, TFIIIA) and two CpG islands, complete sequence Length = 166141 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 126 aattggaggaagaaacaaga 145 |||||||||||||||||||| Sbjct: 19544 aattggaggaagaaacaaga 19525
>emb|AL137142.20| Human DNA sequence from clone RP11-173P16 on chromosome 13q12.2-13.3 Contains a novel pseudogene, the gene for heat shock 105kD (HSP105B) (HSP105A KIAA0201 NY-CO-25), the 5' end of a novel gene and two CpG islands, complete sequence Length = 113850 Score = 40.1 bits (20), Expect = 6.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 270 gatttatcacgaagagaaaaagaacaaa 297 |||||||||| ||||| ||||||||||| Sbjct: 79169 gatttatcacaaagagcaaaagaacaaa 79142
>emb|AL136318.13| Human DNA sequence from clone RP1-254P11 on chromosome 10 Contains a transcription elongation factor B (SIII) polypeptide 1 (15kDa, elongin C) (TCEB1) pseudogene, complete sequence Length = 55284 Score = 40.1 bits (20), Expect = 6.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 270 gatttatcacgaagagaaaaagaacaaa 297 |||||||||| ||||| ||||||||||| Sbjct: 6618 gatttatcacaaagagcaaaagaacaaa 6591
>gb|AY152836.1| Felis catus clone BAC 160a17 major histocompatiblity complex classical class II region, partial sequence Length = 130898 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 178 aagaaaaatctgacataaacaacc 201 ||||||||||||| |||||||||| Sbjct: 7004 aagaaaaatctgaaataaacaacc 6981
>gb|AY152834.1| Felis catus clone PAC f2 major histocompatiblity complex classical class II region, partial sequence Length = 64168 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 178 aagaaaaatctgacataaacaacc 201 ||||||||||||| |||||||||| Sbjct: 49417 aagaaaaatctgaaataaacaacc 49394
>gb|AY152835.1| Felis catus clone PAC g7 major histocompatiblity complex classical class II region, partial sequence Length = 77680 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 178 aagaaaaatctgacataaacaacc 201 ||||||||||||| |||||||||| Sbjct: 28951 aagaaaaatctgaaataaacaacc 28928
>emb|CR380958.1| Candida glabrata strain CBS138 chromosome L complete sequence Length = 1440588 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 282 agagaaaaagaacaaattgcaaaa 305 |||||||||||| ||||||||||| Sbjct: 1264251 agagaaaaagaagaaattgcaaaa 1264274
>emb|BX908798.1| Parachlamydia-related symbiont UWE25, complete genome Length = 2414465 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 157 atgaagatacttctgaagaa 176 |||||||||||||||||||| Sbjct: 1811774 atgaagatacttctgaagaa 1811793
>emb|AL929356.1|PFA929356 Plasmodium falciparum strain 3D7, chromosome 9; segment 2/5 Length = 335050 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 211 ttataaataaaacgaaaaaagcat 234 |||||||||||| ||||||||||| Sbjct: 135028 ttataaataaaaagaaaaaagcat 135051
>emb|BX323020.9| Zebrafish DNA sequence from clone DKEY-9K8 in linkage group 1, complete sequence Length = 80819 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 166 cttctgaagaagaagaaaaa 185 |||||||||||||||||||| Sbjct: 58685 cttctgaagaagaagaaaaa 58704
>gb|AC090233.16| Homo sapiens chromosome 18, clone RP11-675P24, complete sequence Length = 167895 Score = 40.1 bits (20), Expect = 6.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 270 gatttatcacgaagagaaaaagaacaaa 297 |||||||||| ||||| ||||||||||| Sbjct: 10502 gatttatcacaaagagcaaaagaacaaa 10529
>gb|AC121333.5| Homo sapiens 3 BAC RP11-691G17 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 142378 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 285 gaaaaagaacaaattgcaaa 304 |||||||||||||||||||| Sbjct: 15659 gaaaaagaacaaattgcaaa 15678
>emb|CR293527.6| Zebrafish DNA sequence from clone DKEYP-66A7 in linkage group 23, complete sequence Length = 76004 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 172 aagaagaagaaaaatctgac 191 |||||||||||||||||||| Sbjct: 46429 aagaagaagaaaaatctgac 46410
>gb|AC067946.6| Homo sapiens BAC clone RP11-627C20 from 4, complete sequence Length = 136875 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 178 aagaaaaatctgacataaacaacc 201 ||||||||||| |||||||||||| Sbjct: 3045 aagaaaaatcttacataaacaacc 3022
>gb|AC104365.4| Homo sapiens chromosome 18, clone RP11-108P20, complete sequence Length = 157871 Score = 40.1 bits (20), Expect = 6.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 270 gatttatcacgaagagaaaaagaacaaa 297 |||||||||| ||||| ||||||||||| Sbjct: 25306 gatttatcacaaagagcaaaagaacaaa 25279
>gb|AC095050.3| Homo sapiens BAC clone RP11-287F9 from 4, complete sequence Length = 220878 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 178 aagaaaaatctgacataaacaacc 201 ||||||||||| |||||||||||| Sbjct: 1051 aagaaaaatcttacataaacaacc 1028
>gb|AC109447.2| Homo sapiens chromosome 5 clone RP11-104C13, complete sequence Length = 172544 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 167 ttctgaagaagaagaaaaat 186 |||||||||||||||||||| Sbjct: 120875 ttctgaagaagaagaaaaat 120894
>gb|AC013724.8| Homo sapiens BAC clone RP11-319E12 from 4, complete sequence Length = 166521 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 168 tctgaagaagaagaaaaatc 187 |||||||||||||||||||| Sbjct: 163875 tctgaagaagaagaaaaatc 163894
>gb|AC102465.11| Mus musculus chromosome 3, clone RP24-333O23, complete sequence Length = 138893 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 171 gaagaagaagaaaaatctga 190 |||||||||||||||||||| Sbjct: 127343 gaagaagaagaaaaatctga 127324
>emb|BX537262.7| Zebrafish DNA sequence from clone DKEY-111N6 in linkage group 1, complete sequence Length = 97035 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 166 cttctgaagaagaagaaaaa 185 |||||||||||||||||||| Sbjct: 40542 cttctgaagaagaagaaaaa 40523
>ref|NM_065993.3| Caenorhabditis elegans C16A3.7 (C16A3.7) mRNA, complete cds Length = 3525 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 171 gaagaagaagaaaaatctga 190 |||||||||||||||||||| Sbjct: 2371 gaagaagaagaaaaatctga 2390
>gb|AC037492.5|AC037492 Homo sapiens chromosome 8, clone RP11-38H17, complete sequence Length = 168278 Score = 40.1 bits (20), Expect = 6.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 270 gatttatcacgaagagaaaaagaacaaa 297 |||||||||| ||||| ||||||||||| Sbjct: 162823 gatttatcacaaagagcaaaagaacaaa 162796
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 294 caaattgcaaaacaggaggc 313 |||||||||||||||||||| Sbjct: 16529870 caaattgcaaaacaggaggc 16529851
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 360 gcaagagcagatcttgctcggctt 383 ||||||||||||||||||| |||| Sbjct: 1424861 gcaagagcagatcttgctctgctt 1424884
>gb|AC012512.7| Homo sapiens BAC clone RP11-561O7 from 2, complete sequence Length = 179460 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 169 ctgaagaagaagaaaaatct 188 |||||||||||||||||||| Sbjct: 84331 ctgaagaagaagaaaaatct 84350
>gb|AC084782.2|AC084782 Homo sapiens chromosome 15 clone RP11-48G14 map 15q21.3, complete sequence Length = 177862 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 281 aagagaaaaagaacaaattg 300 |||||||||||||||||||| Sbjct: 135038 aagagaaaaagaacaaattg 135019
>gb|AC068713.8|AC068713 Homo sapiens chromosome 15 clone RP11-1129I3 map 15q21.3, complete sequence Length = 132724 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 281 aagagaaaaagaacaaattg 300 |||||||||||||||||||| Sbjct: 3037 aagagaaaaagaacaaattg 3018
>gb|AC134729.2| Homo sapiens 3 BAC RP11-671L3 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 155733 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 281 aagagaaaaagaacaaattg 300 |||||||||||||||||||| Sbjct: 35817 aagagaaaaagaacaaattg 35836
>gb|AC114748.4| Homo sapiens BAC clone RP11-164A18 from 2, complete sequence Length = 127561 Score = 40.1 bits (20), Expect = 6.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 270 gatttatcacgaagagaaaaagaacaaa 297 ||||||||| |||||| ||||||||||| Sbjct: 39533 gatttatcatgaagagcaaaagaacaaa 39560
>gb|AC024085.5|AC024085 Human Chromosome 7 clone RP11-190G13, complete sequence Length = 168405 Score = 40.1 bits (20), Expect = 6.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 270 gatttatcacgaagagaaaaagaacaaa 297 |||||||||| ||||| ||||||||||| Sbjct: 48003 gatttatcacaaagagcaaaagaacaaa 47976
>gb|AC068466.4| Homo sapiens chromosome 8, clone RP11-370A22, complete sequence Length = 179597 Score = 40.1 bits (20), Expect = 6.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 270 gatttatcacgaagagaaaaagaacaaa 297 |||||||||| ||||| ||||||||||| Sbjct: 21746 gatttatcacaaagagcaaaagaacaaa 21719
>dbj|AP002838.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0038F22 Length = 101666 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 360 gcaagagcagatcttgctcggctt 383 ||||||||||||||||||| |||| Sbjct: 32147 gcaagagcagatcttgctctgctt 32170
>dbj|AP001168.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, clone:P0425F02 Length = 176979 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 360 gcaagagcagatcttgctcggctt 383 ||||||||||||||||||| |||| Sbjct: 133400 gcaagagcagatcttgctctgctt 133423
>dbj|AP005180.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0003B09 Length = 161813 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 294 caaattgcaaaacaggaggc 313 |||||||||||||||||||| Sbjct: 20490 caaattgcaaaacaggaggc 20471
>dbj|BS000210.2| Pan troglodytes chromosome 22 clone:RP43-018H16, map 22, complete sequences Length = 148120 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 282 agagaaaaagaacaaattgcaaaa 305 ||||||||||||||||| |||||| Sbjct: 56568 agagaaaaagaacaaatggcaaaa 56545
>dbj|AK100186.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023033L15, full insert sequence Length = 1120 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 360 gcaagagcagatcttgctcggctt 383 ||||||||||||||||||| |||| Sbjct: 114 gcaagagcagatcttgctctgctt 137
>dbj|AK100014.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013142G20, full insert sequence Length = 1941 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 360 gcaagagcagatcttgctcggctt 383 ||||||||||||||||||| |||| Sbjct: 997 gcaagagcagatcttgctctgctt 1020
>gb|U41534.2| Caenorhabditis elegans cosmid C16A3, complete sequence Length = 34968 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 171 gaagaagaagaaaaatctga 190 |||||||||||||||||||| Sbjct: 9901 gaagaagaagaaaaatctga 9920
>dbj|AK061048.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-205-F12, full insert sequence Length = 1102 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 360 gcaagagcagatcttgctcggctt 383 ||||||||||||||||||| |||| Sbjct: 158 gcaagagcagatcttgctctgctt 181
>dbj|AK060186.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-001-D04, full insert sequence Length = 1087 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 360 gcaagagcagatcttgctcggctt 383 ||||||||||||||||||| |||| Sbjct: 113 gcaagagcagatcttgctctgctt 136
>emb|AL132863.1|CEY37H2A Caenorhabditis elegans YAC Y37H2A, complete sequence Length = 40560 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 211 ttataaataaaacgaaaaaa 230 |||||||||||||||||||| Sbjct: 22800 ttataaataaaacgaaaaaa 22781
>emb|BX914214.12| Zebrafish DNA sequence from clone DKEY-9I5 in linkage group 3, complete sequence Length = 137573 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 172 aagaagaagaaaaatctgac 191 |||||||||||||||||||| Sbjct: 27051 aagaagaagaaaaatctgac 27032
>dbj|AP001696.1| Homo sapiens genomic DNA, chromosome 21q, section 40/105 Length = 340000 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 282 agagaaaaagaacaaattgcaaaa 305 ||||||||||||||||| |||||| Sbjct: 311971 agagaaaaagaacaaatggcaaaa 311948
>gb|AE017332.1| Mycoplasma hyopneumoniae 232, complete genome Length = 892758 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 286 aaaaagaacaaattgcaaaa 305 |||||||||||||||||||| Sbjct: 266351 aaaaagaacaaattgcaaaa 266332
>gb|AE017194.1| Bacillus cereus ATCC 10987, complete genome Length = 5224283 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 281 aagagaaaaagaacaaattg 300 |||||||||||||||||||| Sbjct: 2909549 aagagaaaaagaacaaattg 2909530
>dbj|AP001597.1| Homo sapiens genomic DNA, chromosome 21, clone:KB1951E10, APP-D21S292 region, complete sequence Length = 176741 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 282 agagaaaaagaacaaattgcaaaa 305 ||||||||||||||||| |||||| Sbjct: 73922 agagaaaaagaacaaatggcaaaa 73899
>dbj|AP005272.2| Homo sapiens genomic DNA, chromosome 18 clone:RP11-172F10, complete sequence Length = 164943 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 270 gatttatcacgaagagaaaaagaa 293 |||||||||||||||| ||||||| Sbjct: 145333 gatttatcacgaagagcaaaagaa 145310 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,205,206 Number of Sequences: 3902068 Number of extensions: 6205206 Number of successful extensions: 157942 Number of sequences better than 10.0: 99 Number of HSP's better than 10.0 without gapping: 99 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 157456 Number of HSP's gapped (non-prelim): 486 length of query: 455 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 433 effective length of database: 17,147,199,772 effective search space: 7424737501276 effective search space used: 7424737501276 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
