Clone Name | basd2k23 |
---|---|
Clone Library Name | barley_pub |
>dbj|AB109216.1| Triticum aestivum mRNA for cysteine protease, complete cds Length = 1260 Score = 343 bits (173), Expect = 2e-91 Identities = 257/285 (90%), Gaps = 2/285 (0%) Strand = Plus / Plus Query: 1 gcatgcggatgctgctgggcgtttgctgcggtggcgacggtggagagcttgaacaagata 60 ||||| |||||||||||||| |||||||| | |||||||||||||||||||||||||||| Sbjct: 547 gcatgtggatgctgctgggcatttgctgcagcggcgacggtggagagcttgaacaagata 606 Query: 61 aatggcggggtagctggtggacctgtcggngcangagctggtggactgcagcacgggtgt 120 |||||||||| ||||||| |||||||| | ||| ||||||||||||||||||||||| || Sbjct: 607 aatggcgggg-agctggttgacctgtccgtgcaggagctggtggactgcagcacgggcgt 665 Query: 121 gttcagctcgccgtgcggctacgggtggcccaagagcgcactccagtggatcaaatcaaa 180 |||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 666 gttcagctcgccatgcggctacgggtggcccaagagcgcactcgcatggatcaaatcaaa 725 Query: 181 aggtggnctcctcacngaggccgagtacccntacntggccaagcgaggcagatgcgaggt 240 ||| || |||||||| |||||||||||||| ||| ||||||||||||||||||||| ||| Sbjct: 726 agggggcctcctcacggaggccgagtacccctacatggccaagcgaggcagatgcgcggt 785 Query: 241 gcacgacgccgnccgacgcatcggcaagatcaccggcgtncagga 285 ||||||| | | ||| || ||||||| ||||||||||| ||||| Sbjct: 786 gcacgacacagcccg-cgtgtcggcaaaatcaccggcgtccagga 829
>gb|AY110563.1| Zea mays CL897_1 mRNA sequence Length = 794 Score = 52.0 bits (26), Expect = 0.001 Identities = 39/44 (88%) Strand = Plus / Plus Query: 66 cggggtagctggtggacctgtcggngcangagctggtggactgc 109 ||||| |||||||| |||||||| ||| ||||||||||||||| Sbjct: 109 cggggaagctggtgtccctgtcggagcaggagctggtggactgc 152
>gb|CP000352.1| Ralstonia metallidurans CH34, complete genome Length = 3928089 Score = 48.1 bits (24), Expect = 0.018 Identities = 24/24 (100%) Strand = Plus / Minus Query: 108 gcagcacgggtgtgttcagctcgc 131 |||||||||||||||||||||||| Sbjct: 3667548 gcagcacgggtgtgttcagctcgc 3667525
>gb|AY110047.1| Zea mays CL878_1 mRNA sequence Length = 1403 Score = 48.1 bits (24), Expect = 0.018 Identities = 34/38 (89%) Strand = Plus / Plus Query: 72 agctggtggacctgtcggngcangagctggtggactgc 109 |||||||| |||||||| ||| ||||||||||||||| Sbjct: 589 agctggtgtccctgtcggagcaggagctggtggactgc 626
>ref|XM_469786.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1460 Score = 44.1 bits (22), Expect = 0.28 Identities = 38/44 (86%) Strand = Plus / Plus Query: 66 cggggtagctggtggacctgtcggngcangagctggtggactgc 109 ||||| |||||||| ||||||| ||| ||||||||||||||| Sbjct: 572 cggggcagctggtgtcgctgtcggagcaggagctggtggactgc 615
>gb|AF377947.3| Oryza sativa (japonica cultivar-group) chromosome 3, BAC clone OSJNBa0032E21, complete sequence Length = 137580 Score = 44.1 bits (22), Expect = 0.28 Identities = 38/44 (86%) Strand = Plus / Minus Query: 66 cggggtagctggtggacctgtcggngcangagctggtggactgc 109 ||||| |||||||| ||||||| ||| ||||||||||||||| Sbjct: 71922 cggggcagctggtgtcgctgtcggagcaggagctggtggactgc 71879
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 44.1 bits (22), Expect = 0.28 Identities = 38/44 (86%) Strand = Plus / Plus Query: 66 cggggtagctggtggacctgtcggngcangagctggtggactgc 109 ||||| |||||||| ||||||| ||| ||||||||||||||| Sbjct: 30731861 cggggcagctggtgtcgctgtcggagcaggagctggtggactgc 30731904
>gb|AC092556.8| Oryza sativa chromosome 3 BAC OSJNBa0047E24 genomic sequence, complete sequence Length = 157970 Score = 44.1 bits (22), Expect = 0.28 Identities = 38/44 (86%) Strand = Plus / Minus Query: 66 cggggtagctggtggacctgtcggngcangagctggtggactgc 109 ||||| |||||||| ||||||| ||| ||||||||||||||| Sbjct: 30529 cggggcagctggtgtcgctgtcggagcaggagctggtggactgc 30486
>gb|AC135225.4| Oryza sativa chromosome 3 BAC OJ1112_G08 genomic sequence, complete sequence Length = 128294 Score = 44.1 bits (22), Expect = 0.28 Identities = 38/44 (86%) Strand = Plus / Plus Query: 66 cggggtagctggtggacctgtcggngcangagctggtggactgc 109 ||||| |||||||| ||||||| ||| ||||||||||||||| Sbjct: 40562 cggggcagctggtgtcgctgtcggagcaggagctggtggactgc 40605
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 44.1 bits (22), Expect = 0.28 Identities = 38/44 (86%) Strand = Plus / Plus Query: 66 cggggtagctggtggacctgtcggngcangagctggtggactgc 109 ||||| |||||||| ||||||| ||| ||||||||||||||| Sbjct: 30823285 cggggcagctggtgtcgctgtcggagcaggagctggtggactgc 30823328
>ref|NM_184000.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1026 Score = 42.1 bits (21), Expect = 1.1 Identities = 25/27 (92%) Strand = Plus / Plus Query: 83 ctgtcggngcangagctggtggactgc 109 ||||||| ||| ||||||||||||||| Sbjct: 508 ctgtcggagcaggagctggtggactgc 534
>ref|NM_183998.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1029 Score = 42.1 bits (21), Expect = 1.1 Identities = 25/27 (92%) Strand = Plus / Plus Query: 83 ctgtcggngcangagctggtggactgc 109 ||||||| ||| ||||||||||||||| Sbjct: 511 ctgtcggagcaggagctggtggactgc 537
>ref|NM_183859.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1074 Score = 42.1 bits (21), Expect = 1.1 Identities = 25/27 (92%) Strand = Plus / Plus Query: 83 ctgtcggngcangagctggtggactgc 109 ||||||| ||| ||||||||||||||| Sbjct: 538 ctgtcggagcaggagctggtggactgc 564
>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome Length = 3188609 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 311 gcgctggcgctggccgtgctc 331 ||||||||||||||||||||| Sbjct: 2787919 gcgctggcgctggccgtgctc 2787899
>gb|AC145324.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0026D03 map near S2137, complete sequence Length = 115141 Score = 42.1 bits (21), Expect = 1.1 Identities = 25/27 (92%) Strand = Plus / Plus Query: 83 ctgtcggngcangagctggtggactgc 109 ||||||| ||| ||||||||||||||| Sbjct: 33237 ctgtcggagcaggagctggtggactgc 33263
>gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, complete sequence Length = 3363523 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 298 gagcaacgaggacgcgctggc 318 ||||||||||||||||||||| Sbjct: 1399401 gagcaacgaggacgcgctggc 1399381
>emb|X80876.1|OSCYSPRO O.sativa mRNA for cysteine protease Length = 1440 Score = 42.1 bits (21), Expect = 1.1 Identities = 25/27 (92%) Strand = Plus / Plus Query: 83 ctgtcggngcangagctggtggactgc 109 ||||||| ||| ||||||||||||||| Sbjct: 661 ctgtcggagcaggagctggtggactgc 687
>gb|CP000089.1| Dechloromonas aromatica RCB, complete genome Length = 4501104 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 257 cgcatcggcaagatcaccggc 277 ||||||||||||||||||||| Sbjct: 408078 cgcatcggcaagatcaccggc 408098
>emb|CR555306.1| Azoarcus sp. EbN1 complete genome Length = 4296230 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 257 cgcatcggcaagatcaccggc 277 ||||||||||||||||||||| Sbjct: 3397999 cgcatcggcaagatcaccggc 3398019
>emb|BX640447.1| Bordetella bronchiseptica strain RB50, complete genome; segment 11/16 Length = 349442 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 257 cgcatcggcaagatcaccggc 277 ||||||||||||||||||||| Sbjct: 190311 cgcatcggcaagatcaccggc 190291
>emb|BX640442.1| Bordetella bronchiseptica strain RB50, complete genome; segment 6/16 Length = 349876 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 310 cgcgctggcgctggccgtgct 330 ||||||||||||||||||||| Sbjct: 167306 cgcgctggcgctggccgtgct 167286
>emb|BX640430.1| Bordetella parapertussis strain 12822, complete genome; segment 8/14 Length = 348014 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 310 cgcgctggcgctggccgtgct 330 ||||||||||||||||||||| Sbjct: 79306 cgcgctggcgctggccgtgct 79286
>emb|BX640428.1| Bordetella parapertussis strain 12822, complete genome; segment 6/14 Length = 348525 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 257 cgcatcggcaagatcaccggc 277 ||||||||||||||||||||| Sbjct: 47906 cgcatcggcaagatcaccggc 47926
>emb|BX640419.1| Bordetella pertussis strain Tohama I, complete genome; segment 9/12 Length = 349672 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 257 cgcatcggcaagatcaccggc 277 ||||||||||||||||||||| Sbjct: 59682 cgcatcggcaagatcaccggc 59662
>emb|AJ428571.1|AEV428571 Azoarcus evansii partial padR gene, padA gene, padB gene, padC gene, padD gene, padE gene, padF gene, padG gene, padH gene, padI gene, padJ gene, ORFA, ORFB and ORFC Length = 16922 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 257 cgcatcggcaagatcaccggc 277 ||||||||||||||||||||| Sbjct: 12145 cgcatcggcaagatcaccggc 12165
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 42.1 bits (21), Expect = 1.1 Identities = 25/27 (92%) Strand = Plus / Minus Query: 83 ctgtcggngcangagctggtggactgc 109 ||||||| ||| ||||||||||||||| Sbjct: 8299163 ctgtcggagcaggagctggtggactgc 8299137
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 42.1 bits (21), Expect = 1.1 Identities = 25/27 (92%) Strand = Plus / Minus Query: 83 ctgtcggngcangagctggtggactgc 109 ||||||| ||| ||||||||||||||| Sbjct: 13831389 ctgtcggagcaggagctggtggactgc 13831363 Score = 42.1 bits (21), Expect = 1.1 Identities = 25/27 (92%) Strand = Plus / Plus Query: 83 ctgtcggngcangagctggtggactgc 109 ||||||| ||| ||||||||||||||| Sbjct: 13825868 ctgtcggagcaggagctggtggactgc 13825894 Score = 42.1 bits (21), Expect = 1.1 Identities = 25/27 (92%) Strand = Plus / Minus Query: 83 ctgtcggngcangagctggtggactgc 109 ||||||| ||| ||||||||||||||| Sbjct: 12729172 ctgtcggagcaggagctggtggactgc 12729146
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 304 cgaggacgcgctggcgctggc 324 ||||||||||||||||||||| Sbjct: 2818896 cgaggacgcgctggcgctggc 2818876
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 311 gcgctggcgctggccgtgctc 331 ||||||||||||||||||||| Sbjct: 866178 gcgctggcgctggccgtgctc 866198
>dbj|AP003852.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0440D10 Length = 144340 Score = 42.1 bits (21), Expect = 1.1 Identities = 25/27 (92%) Strand = Plus / Minus Query: 83 ctgtcggngcangagctggtggactgc 109 ||||||| ||| ||||||||||||||| Sbjct: 68792 ctgtcggagcaggagctggtggactgc 68766 Score = 42.1 bits (21), Expect = 1.1 Identities = 25/27 (92%) Strand = Plus / Plus Query: 83 ctgtcggngcangagctggtggactgc 109 ||||||| ||| ||||||||||||||| Sbjct: 63271 ctgtcggagcaggagctggtggactgc 63297
>dbj|AP003143.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0489E06 Length = 140229 Score = 42.1 bits (21), Expect = 1.1 Identities = 25/27 (92%) Strand = Plus / Minus Query: 83 ctgtcggngcangagctggtggactgc 109 ||||||| ||| ||||||||||||||| Sbjct: 9571 ctgtcggagcaggagctggtggactgc 9545
>dbj|AP002869.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0554D10 Length = 158723 Score = 42.1 bits (21), Expect = 1.1 Identities = 25/27 (92%) Strand = Plus / Minus Query: 83 ctgtcggngcangagctggtggactgc 109 ||||||| ||| ||||||||||||||| Sbjct: 96201 ctgtcggagcaggagctggtggactgc 96175
>dbj|AK071495.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023099K03, full insert sequence Length = 1511 Score = 42.1 bits (21), Expect = 1.1 Identities = 25/27 (92%) Strand = Plus / Plus Query: 83 ctgtcggngcangagctggtggactgc 109 ||||||| ||| ||||||||||||||| Sbjct: 667 ctgtcggagcaggagctggtggactgc 693
>gb|AY109416.1| Zea mays CL694_1 mRNA sequence Length = 3272 Score = 42.1 bits (21), Expect = 1.1 Identities = 25/27 (92%) Strand = Plus / Minus Query: 83 ctgtcggngcangagctggtggactgc 109 ||||||| ||| ||||||||||||||| Sbjct: 3115 ctgtcggagcaggagctggtggactgc 3089
>dbj|AB004648.1| Oryza sativa (japonica cultivar-group) RepA gene for cysteine endopeptidase, complete cds Length = 3836 Score = 42.1 bits (21), Expect = 1.1 Identities = 25/27 (92%) Strand = Plus / Plus Query: 83 ctgtcggngcangagctggtggactgc 109 ||||||| ||| ||||||||||||||| Sbjct: 1771 ctgtcggagcaggagctggtggactgc 1797
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 42.1 bits (21), Expect = 1.1 Identities = 25/27 (92%) Strand = Plus / Minus Query: 83 ctgtcggngcangagctggtggactgc 109 ||||||| ||| ||||||||||||||| Sbjct: 8369926 ctgtcggagcaggagctggtggactgc 8369900
>ref|XM_470991.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1152 Score = 40.1 bits (20), Expect = 4.4 Identities = 24/26 (92%) Strand = Plus / Plus Query: 83 ctgtcggngcangagctggtggactg 108 ||||||| ||| |||||||||||||| Sbjct: 619 ctgtcggagcaagagctggtggactg 644
>gb|AC129716.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0068N01, complete sequence Length = 152233 Score = 40.1 bits (20), Expect = 4.4 Identities = 30/34 (88%) Strand = Plus / Plus Query: 83 ctgtcggngcangagctggtggactgcagcacgg 116 ||||||| ||| |||||| | ||||||||||||| Sbjct: 116994 ctgtcggagcaggagctgatcgactgcagcacgg 117027
>ref|XM_848249.1| PREDICTED: Canis familiaris similar to TSPY-like 5 (LOC610706), mRNA Length = 1071 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 313 gctggcgctggccgtgctca 332 |||||||||||||||||||| Sbjct: 929 gctggcgctggccgtgctca 948
>emb|AL591785.1|SME591785 Sinorhizobium meliloti 1021 complete chromosome; segment 4/12 Length = 286550 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 260 atcggcaagatcaccggcgt 279 |||||||||||||||||||| Sbjct: 272699 atcggcaagatcaccggcgt 272680
>gb|CP000316.1| Polaromonas sp. JS666, complete genome Length = 5200264 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 306 aggacgcgctggcgctggcc 325 |||||||||||||||||||| Sbjct: 2231891 aggacgcgctggcgctggcc 2231910
>gb|AY335487.1| Oryza sativa (japonica cultivar-group) cysteine protease CP1 mRNA, complete cds Length = 1227 Score = 40.1 bits (20), Expect = 4.4 Identities = 30/34 (88%) Strand = Plus / Plus Query: 83 ctgtcggngcangagctggtggactgcagcacgg 116 ||||||| ||| |||||| | ||||||||||||| Sbjct: 577 ctgtcggagcaggagctgatcgactgcagcacgg 610
>emb|Z97022.1|HVZ97022 Hordeum vulgare gene encoding cysteine proteinase Length = 5593 Score = 40.1 bits (20), Expect = 4.4 Identities = 32/36 (88%) Strand = Plus / Plus Query: 10 tgctgctgggcgtttgctgcggtggcgacggtggag 45 |||||||||||||| | ||||||||| |||||||| Sbjct: 4331 tgctgctgggcgttctcggcggtggcggcggtggag 4366
>emb|CR857593.1| Pongo pygmaeus mRNA; cDNA DKFZp469H1115 (from clone DKFZp469H1115) Length = 4699 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 311 gcgctggcgctggccgtgct 330 |||||||||||||||||||| Sbjct: 158 gcgctggcgctggccgtgct 139
>dbj|AK125157.1| Homo sapiens cDNA FLJ43167 fis, clone FCBBF3004041 Length = 2595 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 311 gcgctggcgctggccgtgct 330 |||||||||||||||||||| Sbjct: 190 gcgctggcgctggccgtgct 171
>gb|AC079022.2|AC079022 Oryza sativa chromosome 5 clone P0574H01, complete sequence Length = 151589 Score = 40.1 bits (20), Expect = 4.4 Identities = 30/34 (88%) Strand = Plus / Plus Query: 83 ctgtcggngcangagctggtggactgcagcacgg 116 ||||||| ||| |||||| | ||||||||||||| Sbjct: 55145 ctgtcggagcaggagctgatcgactgcagcacgg 55178
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 4.4 Identities = 24/26 (92%) Strand = Plus / Minus Query: 83 ctgtcggngcangagctggtggactg 108 ||||||| ||| |||||||||||||| Sbjct: 462410 ctgtcggagcaagagctggtggactg 462385
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 4.4 Identities = 30/34 (88%) Strand = Plus / Plus Query: 83 ctgtcggngcangagctggtggactgcagcacgg 116 ||||||| ||| |||||| | ||||||||||||| Sbjct: 455347 ctgtcggagcaggagctgatcgactgcagcacgg 455380
>gb|AF133838.1| Sandersonia aurantiaca papain-like cysteine protease (PRT15) mRNA, partial cds Length = 1456 Score = 40.1 bits (20), Expect = 4.4 Identities = 24/26 (92%) Strand = Plus / Plus Query: 83 ctgtcggngcangagctggtggactg 108 ||||||| ||| |||||||||||||| Sbjct: 262 ctgtcggagcaggagctggtggactg 287
>dbj|AB186750.1| Sphingomonas paucimobilis orf1, orf2, ligM, metF, ligH genes for putative formaldehyde dehydrogenase, putative alkyl salicylate esterase, vanillate/3-O-methylgallate O-demethylase, 5,10-methylenetetrahydrofolate reductase, 10-formyltetrahydrofolate synthetase, partial and complete cds Length = 9491 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 303 acgaggacgcgctggcgctg 322 |||||||||||||||||||| Sbjct: 4136 acgaggacgcgctggcgctg 4155
>gb|AC018730.8| Homo sapiens BAC clone RP11-13J10 from 2, complete sequence Length = 154728 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 311 gcgctggcgctggccgtgct 330 |||||||||||||||||||| Sbjct: 79461 gcgctggcgctggccgtgct 79442
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 307 ggacgcgctggcgctggccg 326 |||||||||||||||||||| Sbjct: 4497657 ggacgcgctggcgctggccg 4497676
>dbj|AK110974.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-174-C02, full insert sequence Length = 1377 Score = 40.1 bits (20), Expect = 4.4 Identities = 24/26 (92%) Strand = Plus / Plus Query: 83 ctgtcggngcangagctggtggactg 108 ||||||| ||| |||||||||||||| Sbjct: 644 ctgtcggagcaagagctggtggactg 669
>dbj|AK106508.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-105-G09, full insert sequence Length = 1409 Score = 40.1 bits (20), Expect = 4.4 Identities = 30/34 (88%) Strand = Plus / Plus Query: 83 ctgtcggngcangagctggtggactgcagcacgg 116 ||||||| ||| |||||| | ||||||||||||| Sbjct: 635 ctgtcggagcaggagctgatcgactgcagcacgg 668
>gb|AY104208.1| Zea mays PCO086864 mRNA sequence Length = 941 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 312 cgctggcgctggccgtgctc 331 |||||||||||||||||||| Sbjct: 205 cgctggcgctggccgtgctc 224
>gb|AY944523.1| Unidentified soil organism clone XIX-33 from Australia environmental-sample Length = 696 Score = 40.1 bits (20), Expect = 4.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 106 ctgcagcacgggtgtgttcagctcgccg 133 ||||||||| |||||| ||||||||||| Sbjct: 86 ctgcagcaccggtgtgatcagctcgccg 113
>emb|AL606620.3|OSJN00065 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0085F13, complete sequence Length = 130249 Score = 40.1 bits (20), Expect = 4.4 Identities = 24/26 (92%) Strand = Plus / Minus Query: 83 ctgtcggngcangagctggtggactg 108 ||||||| ||| |||||||||||||| Sbjct: 101162 ctgtcggagcaagagctggtggactg 101137
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 2 catgcggatgctgctgggcg 21 |||||||||||||||||||| Sbjct: 630755 catgcggatgctgctgggcg 630774 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,558,528 Number of Sequences: 3902068 Number of extensions: 1558528 Number of successful extensions: 34200 Number of sequences better than 10.0: 58 Number of HSP's better than 10.0 without gapping: 58 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 33122 Number of HSP's gapped (non-prelim): 1076 length of query: 335 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 313 effective length of database: 17,147,199,772 effective search space: 5367073528636 effective search space used: 5367073528636 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)