ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd2k20 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AB042240.3| Triticum aestivum chloroplast DNA, complete genome Length = 134545 Score = 361 bits (182), Expect = 5e-97 Identities = 185/186 (99%) Strand = Plus / Minus Query: 2 gagctcccaaccagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgag 61 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 119537 gagctcccaagcagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgag 119478 Query: 62 ccggcgactcataggcagtggcttggttaagggaacggaacccaccggagccgtagcgaa 121 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 119477 ccggcgactcataggcagtggcttggttaagggaacggaacccaccggagccgtagcgaa 119418 Query: 122 agcgagtcttaatagggcgattgtcactgcttatggacccgaacctgggtgatctatcca 181 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 119417 agcgagtcttaatagggcgattgtcactgcttatggacccgaacctgggtgatctatcca 119358 Query: 182 tgacca 187 |||||| Sbjct: 119357 tgacca 119352 Score = 361 bits (182), Expect = 5e-97 Identities = 185/186 (99%) Strand = Plus / Plus Query: 2 gagctcccaaccagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgag 61 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 95357 gagctcccaagcagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgag 95416 Query: 62 ccggcgactcataggcagtggcttggttaagggaacggaacccaccggagccgtagcgaa 121 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 95417 ccggcgactcataggcagtggcttggttaagggaacggaacccaccggagccgtagcgaa 95476 Query: 122 agcgagtcttaatagggcgattgtcactgcttatggacccgaacctgggtgatctatcca 181 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 95477 agcgagtcttaatagggcgattgtcactgcttatggacccgaacctgggtgatctatcca 95536 Query: 182 tgacca 187 |||||| Sbjct: 95537 tgacca 95542
>gb|AC112514.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNAb0023M11, complete sequence Length = 120228 Score = 353 bits (178), Expect = 1e-94 Identities = 184/186 (98%) Strand = Plus / Minus Query: 2 gagctcccaaccagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgag 61 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 118318 gagctcccaagcagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgag 118259 Query: 62 ccggcgactcataggcagtggcttggttaagggaacggaacccaccggagccgtagcgaa 121 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 118258 ccggcgactcataggcagtggcttggttaagggaacggaacccaccggagccgtagcgaa 118199 Query: 122 agcgagtcttaatagggcgattgtcactgcttatggacccgaacctgggtgatctatcca 181 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 118198 agcgagtcttcatagggcgattgtcactgcttatggacccgaacctgggtgatctatcca 118139 Query: 182 tgacca 187 |||||| Sbjct: 118138 tgacca 118133
>gb|AY522330.1| Oryza sativa (japonica cultivar-group) cultivar Nipponbare chloroplast, complete genome Length = 134551 Score = 353 bits (178), Expect = 1e-94 Identities = 184/186 (98%) Strand = Plus / Minus Query: 2 gagctcccaaccagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgag 61 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 119402 gagctcccaagcagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgag 119343 Query: 62 ccggcgactcataggcagtggcttggttaagggaacggaacccaccggagccgtagcgaa 121 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 119342 ccggcgactcataggcagtggcttggttaagggaacggaacccaccggagccgtagcgaa 119283 Query: 122 agcgagtcttaatagggcgattgtcactgcttatggacccgaacctgggtgatctatcca 181 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 119282 agcgagtcttcatagggcgattgtcactgcttatggacccgaacctgggtgatctatcca 119223 Query: 182 tgacca 187 |||||| Sbjct: 119222 tgacca 119217 Score = 353 bits (178), Expect = 1e-94 Identities = 184/186 (98%) Strand = Plus / Plus Query: 2 gagctcccaaccagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgag 61 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 95754 gagctcccaagcagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgag 95813 Query: 62 ccggcgactcataggcagtggcttggttaagggaacggaacccaccggagccgtagcgaa 121 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 95814 ccggcgactcataggcagtggcttggttaagggaacggaacccaccggagccgtagcgaa 95873 Query: 122 agcgagtcttaatagggcgattgtcactgcttatggacccgaacctgggtgatctatcca 181 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 95874 agcgagtcttcatagggcgattgtcactgcttatggacccgaacctgggtgatctatcca 95933 Query: 182 tgacca 187 |||||| Sbjct: 95934 tgacca 95939
>gb|AY522331.1| Oryza sativa (japonica cultivar-group) isolate PA64S chloroplast, complete genome Length = 134551 Score = 353 bits (178), Expect = 1e-94 Identities = 184/186 (98%) Strand = Plus / Minus Query: 2 gagctcccaaccagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgag 61 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 119402 gagctcccaagcagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgag 119343 Query: 62 ccggcgactcataggcagtggcttggttaagggaacggaacccaccggagccgtagcgaa 121 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 119342 ccggcgactcataggcagtggcttggttaagggaacggaacccaccggagccgtagcgaa 119283 Query: 122 agcgagtcttaatagggcgattgtcactgcttatggacccgaacctgggtgatctatcca 181 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 119282 agcgagtcttcatagggcgattgtcactgcttatggacccgaacctgggtgatctatcca 119223 Query: 182 tgacca 187 |||||| Sbjct: 119222 tgacca 119217 Score = 353 bits (178), Expect = 1e-94 Identities = 184/186 (98%) Strand = Plus / Plus Query: 2 gagctcccaaccagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgag 61 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 95754 gagctcccaagcagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgag 95813 Query: 62 ccggcgactcataggcagtggcttggttaagggaacggaacccaccggagccgtagcgaa 121 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 95814 ccggcgactcataggcagtggcttggttaagggaacggaacccaccggagccgtagcgaa 95873 Query: 122 agcgagtcttaatagggcgattgtcactgcttatggacccgaacctgggtgatctatcca 181 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 95874 agcgagtcttcatagggcgattgtcactgcttatggacccgaacctgggtgatctatcca 95933 Query: 182 tgacca 187 |||||| Sbjct: 95934 tgacca 95939
>gb|AY522329.1| Oryza sativa (indica cultivar-group) isolate 93-11 chloroplast, complete genome Length = 134496 Score = 353 bits (178), Expect = 1e-94 Identities = 184/186 (98%) Strand = Plus / Minus Query: 2 gagctcccaaccagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgag 61 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 119351 gagctcccaagcagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgag 119292 Query: 62 ccggcgactcataggcagtggcttggttaagggaacggaacccaccggagccgtagcgaa 121 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 119291 ccggcgactcataggcagtggcttggttaagggaacggaacccaccggagccgtagcgaa 119232 Query: 122 agcgagtcttaatagggcgattgtcactgcttatggacccgaacctgggtgatctatcca 181 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 119231 agcgagtcttcatagggcgattgtcactgcttatggacccgaacctgggtgatctatcca 119172 Query: 182 tgacca 187 |||||| Sbjct: 119171 tgacca 119166 Score = 353 bits (178), Expect = 1e-94 Identities = 184/186 (98%) Strand = Plus / Plus Query: 2 gagctcccaaccagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgag 61 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 95699 gagctcccaagcagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgag 95758 Query: 62 ccggcgactcataggcagtggcttggttaagggaacggaacccaccggagccgtagcgaa 121 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 95759 ccggcgactcataggcagtggcttggttaagggaacggaacccaccggagccgtagcgaa 95818 Query: 122 agcgagtcttaatagggcgattgtcactgcttatggacccgaacctgggtgatctatcca 181 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 95819 agcgagtcttcatagggcgattgtcactgcttatggacccgaacctgggtgatctatcca 95878 Query: 182 tgacca 187 |||||| Sbjct: 95879 tgacca 95884
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 353 bits (178), Expect = 1e-94 Identities = 184/186 (98%) Strand = Plus / Plus Query: 2 gagctcccaaccagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgag 61 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 31508332 gagctcccaagcagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgag 31508391 Query: 62 ccggcgactcataggcagtggcttggttaagggaacggaacccaccggagccgtagcgaa 121 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 31508392 ccggcgactcataggcagtggcttggttaagggaacggaacccaccggagccgtagcgaa 31508451 Query: 122 agcgagtcttaatagggcgattgtcactgcttatggacccgaacctgggtgatctatcca 181 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 31508452 agcgagtcttcatagggcgattgtcactgcttatggacccgaacctgggtgatctatcca 31508511 Query: 182 tgacca 187 |||||| Sbjct: 31508512 tgacca 31508517
>gb|AC107207.9| Oryza sativa chromosome 3 BAC OSJNBb0106M04 genomic sequence, complete sequence Length = 133449 Score = 353 bits (178), Expect = 1e-94 Identities = 184/186 (98%) Strand = Plus / Minus Query: 2 gagctcccaaccagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgag 61 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 84264 gagctcccaagcagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgag 84205 Query: 62 ccggcgactcataggcagtggcttggttaagggaacggaacccaccggagccgtagcgaa 121 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 84204 ccggcgactcataggcagtggcttggttaagggaacggaacccaccggagccgtagcgaa 84145 Query: 122 agcgagtcttaatagggcgattgtcactgcttatggacccgaacctgggtgatctatcca 181 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 84144 agcgagtcttcatagggcgattgtcactgcttatggacccgaacctgggtgatctatcca 84085 Query: 182 tgacca 187 |||||| Sbjct: 84084 tgacca 84079
>emb|X15901.1|CHOSXX Oryza sativa (japonica cultivar-group) chloroplast genome Length = 134525 Score = 353 bits (178), Expect = 1e-94 Identities = 184/186 (98%) Strand = Plus / Minus Query: 2 gagctcccaaccagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgag 61 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 119371 gagctcccaagcagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgag 119312 Query: 62 ccggcgactcataggcagtggcttggttaagggaacggaacccaccggagccgtagcgaa 121 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 119311 ccggcgactcataggcagtggcttggttaagggaacggaacccaccggagccgtagcgaa 119252 Query: 122 agcgagtcttaatagggcgattgtcactgcttatggacccgaacctgggtgatctatcca 181 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 119251 agcgagtcttcatagggcgattgtcactgcttatggacccgaacctgggtgatctatcca 119192 Query: 182 tgacca 187 |||||| Sbjct: 119191 tgacca 119186 Score = 353 bits (178), Expect = 1e-94 Identities = 184/186 (98%) Strand = Plus / Plus Query: 2 gagctcccaaccagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgag 61 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 95747 gagctcccaagcagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgag 95806 Query: 62 ccggcgactcataggcagtggcttggttaagggaacggaacccaccggagccgtagcgaa 121 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 95807 ccggcgactcataggcagtggcttggttaagggaacggaacccaccggagccgtagcgaa 95866 Query: 122 agcgagtcttaatagggcgattgtcactgcttatggacccgaacctgggtgatctatcca 181 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 95867 agcgagtcttcatagggcgattgtcactgcttatggacccgaacctgggtgatctatcca 95926 Query: 182 tgacca 187 |||||| Sbjct: 95927 tgacca 95932
>emb|BX569685.1|OSJN00291 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0061C08, complete sequence Length = 145980 Score = 353 bits (178), Expect = 1e-94 Identities = 184/186 (98%) Strand = Plus / Plus Query: 2 gagctcccaaccagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgag 61 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 14521 gagctcccaagcagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgag 14580 Query: 62 ccggcgactcataggcagtggcttggttaagggaacggaacccaccggagccgtagcgaa 121 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 14581 ccggcgactcataggcagtggcttggttaagggaacggaacccaccggagccgtagcgaa 14640 Query: 122 agcgagtcttaatagggcgattgtcactgcttatggacccgaacctgggtgatctatcca 181 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 14641 agcgagtcttcatagggcgattgtcactgcttatggacccgaacctgggtgatctatcca 14700 Query: 182 tgacca 187 |||||| Sbjct: 14701 tgacca 14706 Score = 329 bits (166), Expect = 2e-87 Identities = 182/186 (97%), Gaps = 1/186 (0%) Strand = Plus / Plus Query: 2 gagctcccaaccagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgag 61 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 122796 gagctcccaagcagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgag 122855 Query: 62 ccggcgactcataggcagtggcttggttaagggaacggaacccaccggagccgtagcgaa 121 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 122856 ccggcgactcataggcagtggcttggttaagggaacggaacccaccggagccgtagcgaa 122915 Query: 122 agcgagtcttaatagggcgattgtcactgcttatggacccgaacctgggtgatctatcca 181 |||||||||| |||||||||||||||||||||||||||||||| || ||||||||||||| Sbjct: 122916 agcgagtcttcatagggcgattgtcactgcttatggacccgaa-ctaggtgatctatcca 122974 Query: 182 tgacca 187 |||||| Sbjct: 122975 tgacca 122980
>emb|AL731605.3|OSJN00246 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0042F21, complete sequence Length = 167113 Score = 353 bits (178), Expect = 1e-94 Identities = 184/186 (98%) Strand = Plus / Plus Query: 2 gagctcccaaccagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgag 61 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 141329 gagctcccaagcagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgag 141388 Query: 62 ccggcgactcataggcagtggcttggttaagggaacggaacccaccggagccgtagcgaa 121 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 141389 ccggcgactcataggcagtggcttggttaagggaacggaacccaccggagccgtagcgaa 141448 Query: 122 agcgagtcttaatagggcgattgtcactgcttatggacccgaacctgggtgatctatcca 181 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 141449 agcgagtcttcatagggcgattgtcactgcttatggacccgaacctgggtgatctatcca 141508 Query: 182 tgacca 187 |||||| Sbjct: 141509 tgacca 141514
>gb|AC122148.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNAb0075K12, complete sequence Length = 125936 Score = 353 bits (178), Expect = 1e-94 Identities = 184/186 (98%) Strand = Plus / Plus Query: 2 gagctcccaaccagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgag 61 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 93925 gagctcccaagcagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgag 93984 Query: 62 ccggcgactcataggcagtggcttggttaagggaacggaacccaccggagccgtagcgaa 121 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 93985 ccggcgactcataggcagtggcttggttaagggaacggaacccaccggagccgtagcgaa 94044 Query: 122 agcgagtcttaatagggcgattgtcactgcttatggacccgaacctgggtgatctatcca 181 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 94045 agcgagtcttcatagggcgattgtcactgcttatggacccgaacctgggtgatctatcca 94104 Query: 182 tgacca 187 |||||| Sbjct: 94105 tgacca 94110
>gb|AC092750.2| Oryza sativa (japonica cultivar-group) cultivar Nipponbare from chromosome 10, complete sequence Length = 134933 Score = 353 bits (178), Expect = 1e-94 Identities = 184/186 (98%) Strand = Plus / Minus Query: 2 gagctcccaaccagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgag 61 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 58090 gagctcccaagcagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgag 58031 Query: 62 ccggcgactcataggcagtggcttggttaagggaacggaacccaccggagccgtagcgaa 121 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 58030 ccggcgactcataggcagtggcttggttaagggaacggaacccaccggagccgtagcgaa 57971 Query: 122 agcgagtcttaatagggcgattgtcactgcttatggacccgaacctgggtgatctatcca 181 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 57970 agcgagtcttcatagggcgattgtcactgcttatggacccgaacctgggtgatctatcca 57911 Query: 182 tgacca 187 |||||| Sbjct: 57910 tgacca 57905
>gb|AC099402.2| Oryza sativa chromosome 10 clone OSJNBa0022D10, complete sequence Length = 144459 Score = 353 bits (178), Expect = 1e-94 Identities = 184/186 (98%) Strand = Plus / Plus Query: 2 gagctcccaaccagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgag 61 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 27989 gagctcccaagcagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgag 28048 Query: 62 ccggcgactcataggcagtggcttggttaagggaacggaacccaccggagccgtagcgaa 121 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 28049 ccggcgactcataggcagtggcttggttaagggaacggaacccaccggagccgtagcgaa 28108 Query: 122 agcgagtcttaatagggcgattgtcactgcttatggacccgaacctgggtgatctatcca 181 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 28109 agcgagtcttcatagggcgattgtcactgcttatggacccgaacctgggtgatctatcca 28168 Query: 182 tgacca 187 |||||| Sbjct: 28169 tgacca 28174
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 353 bits (178), Expect = 1e-94 Identities = 184/186 (98%) Strand = Plus / Plus Query: 2 gagctcccaaccagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgag 61 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9268681 gagctcccaagcagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgag 9268740 Query: 62 ccggcgactcataggcagtggcttggttaagggaacggaacccaccggagccgtagcgaa 121 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9268741 ccggcgactcataggcagtggcttggttaagggaacggaacccaccggagccgtagcgaa 9268800 Query: 122 agcgagtcttaatagggcgattgtcactgcttatggacccgaacctgggtgatctatcca 181 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9268801 agcgagtcttcatagggcgattgtcactgcttatggacccgaacctgggtgatctatcca 9268860 Query: 182 tgacca 187 |||||| Sbjct: 9268861 tgacca 9268866 Score = 353 bits (178), Expect = 1e-94 Identities = 184/186 (98%) Strand = Plus / Plus Query: 2 gagctcccaaccagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgag 61 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9056595 gagctcccaagcagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgag 9056654 Query: 62 ccggcgactcataggcagtggcttggttaagggaacggaacccaccggagccgtagcgaa 121 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9056655 ccggcgactcataggcagtggcttggttaagggaacggaacccaccggagccgtagcgaa 9056714 Query: 122 agcgagtcttaatagggcgattgtcactgcttatggacccgaacctgggtgatctatcca 181 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9056715 agcgagtcttcatagggcgattgtcactgcttatggacccgaacctgggtgatctatcca 9056774 Query: 182 tgacca 187 |||||| Sbjct: 9056775 tgacca 9056780 Score = 345 bits (174), Expect = 3e-92 Identities = 183/186 (98%) Strand = Plus / Plus Query: 2 gagctcccaaccagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgag 61 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9228181 gagctcccaagcagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgag 9228240 Query: 62 ccggcgactcataggcagtggcttggttaagggaacggaacccaccggagccgtagcgaa 121 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9228241 ccggcgactcataggcagtggcttggttaagggaacggaacccaccggagccgtagcgaa 9228300 Query: 122 agcgagtcttaatagggcgattgtcactgcttatggacccgaacctgggtgatctatcca 181 |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 9228301 agcgagtcttcatagggcgattgtcactgcttatggacccgaacctaggtgatctatcca 9228360 Query: 182 tgacca 187 |||||| Sbjct: 9228361 tgacca 9228366 Score = 329 bits (166), Expect = 2e-87 Identities = 182/186 (97%), Gaps = 1/186 (0%) Strand = Plus / Plus Query: 2 gagctcccaaccagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgag 61 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9164770 gagctcccaagcagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgag 9164829 Query: 62 ccggcgactcataggcagtggcttggttaagggaacggaacccaccggagccgtagcgaa 121 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9164830 ccggcgactcataggcagtggcttggttaagggaacggaacccaccggagccgtagcgaa 9164889 Query: 122 agcgagtcttaatagggcgattgtcactgcttatggacccgaacctgggtgatctatcca 181 |||||||||| |||||||||||||||||||||||||||||||| || ||||||||||||| Sbjct: 9164890 agcgagtcttcatagggcgattgtcactgcttatggacccgaa-ctaggtgatctatcca 9164948 Query: 182 tgacca 187 |||||| Sbjct: 9164949 tgacca 9164954
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 353 bits (178), Expect = 1e-94 Identities = 184/186 (98%) Strand = Plus / Plus Query: 2 gagctcccaaccagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgag 61 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 19938666 gagctcccaagcagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgag 19938725 Query: 62 ccggcgactcataggcagtggcttggttaagggaacggaacccaccggagccgtagcgaa 121 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 19938726 ccggcgactcataggcagtggcttggttaagggaacggaacccaccggagccgtagcgaa 19938785 Query: 122 agcgagtcttaatagggcgattgtcactgcttatggacccgaacctgggtgatctatcca 181 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 19938786 agcgagtcttcatagggcgattgtcactgcttatggacccgaacctgggtgatctatcca 19938845 Query: 182 tgacca 187 |||||| Sbjct: 19938846 tgacca 19938851 Score = 353 bits (178), Expect = 1e-94 Identities = 184/186 (98%) Strand = Plus / Plus Query: 2 gagctcccaaccagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgag 61 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10387533 gagctcccaagcagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgag 10387592 Query: 62 ccggcgactcataggcagtggcttggttaagggaacggaacccaccggagccgtagcgaa 121 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10387593 ccggcgactcataggcagtggcttggttaagggaacggaacccaccggagccgtagcgaa 10387652 Query: 122 agcgagtcttaatagggcgattgtcactgcttatggacccgaacctgggtgatctatcca 181 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10387653 agcgagtcttcatagggcgattgtcactgcttatggacccgaacctgggtgatctatcca 10387712 Query: 182 tgacca 187 |||||| Sbjct: 10387713 tgacca 10387718 Score = 353 bits (178), Expect = 1e-94 Identities = 184/186 (98%) Strand = Plus / Minus Query: 2 gagctcccaaccagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgag 61 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10276765 gagctcccaagcagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgag 10276706 Query: 62 ccggcgactcataggcagtggcttggttaagggaacggaacccaccggagccgtagcgaa 121 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10276705 ccggcgactcataggcagtggcttggttaagggaacggaacccaccggagccgtagcgaa 10276646 Query: 122 agcgagtcttaatagggcgattgtcactgcttatggacccgaacctgggtgatctatcca 181 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10276645 agcgagtcttcatagggcgattgtcactgcttatggacccgaacctgggtgatctatcca 10276586 Query: 182 tgacca 187 |||||| Sbjct: 10276585 tgacca 10276580
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 353 bits (178), Expect = 1e-94 Identities = 184/186 (98%) Strand = Plus / Plus Query: 2 gagctcccaaccagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgag 61 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 31598848 gagctcccaagcagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgag 31598907 Query: 62 ccggcgactcataggcagtggcttggttaagggaacggaacccaccggagccgtagcgaa 121 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 31598908 ccggcgactcataggcagtggcttggttaagggaacggaacccaccggagccgtagcgaa 31598967 Query: 122 agcgagtcttaatagggcgattgtcactgcttatggacccgaacctgggtgatctatcca 181 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 31598968 agcgagtcttcatagggcgattgtcactgcttatggacccgaacctgggtgatctatcca 31599027 Query: 182 tgacca 187 |||||| Sbjct: 31599028 tgacca 31599033
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 353 bits (178), Expect = 1e-94 Identities = 184/186 (98%) Strand = Plus / Plus Query: 2 gagctcccaaccagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgag 61 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 33526164 gagctcccaagcagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgag 33526223 Query: 62 ccggcgactcataggcagtggcttggttaagggaacggaacccaccggagccgtagcgaa 121 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 33526224 ccggcgactcataggcagtggcttggttaagggaacggaacccaccggagccgtagcgaa 33526283 Query: 122 agcgagtcttaatagggcgattgtcactgcttatggacccgaacctgggtgatctatcca 181 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 33526284 agcgagtcttcatagggcgattgtcactgcttatggacccgaacctgggtgatctatcca 33526343 Query: 182 tgacca 187 |||||| Sbjct: 33526344 tgacca 33526349 Score = 228 bits (115), Expect = 5e-57 Identities = 115/115 (100%) Strand = Plus / Minus Query: 2 gagctcccaaccagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgag 61 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 16678040 gagctcccaaccagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgag 16677981 Query: 62 ccggcgactcataggcagtggcttggttaagggaacggaacccaccggagccgta 116 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 16677980 ccggcgactcataggcagtggcttggttaagggaacggaacccaccggagccgta 16677926 Score = 117 bits (59), Expect = 1e-23 Identities = 62/63 (98%) Strand = Plus / Minus Query: 2 gagctcccaaccagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgag 61 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 32744725 gagctcccaagcagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgag 32744666 Query: 62 ccg 64 ||| Sbjct: 32744665 ccg 32744663
>gb|AC074232.11| Oryza sativa chromosome 10 BAC OSJNBb0005J14 genomic sequence, complete sequence Length = 116932 Score = 353 bits (178), Expect = 1e-94 Identities = 184/186 (98%) Strand = Plus / Minus Query: 2 gagctcccaaccagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgag 61 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 47377 gagctcccaagcagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgag 47318 Query: 62 ccggcgactcataggcagtggcttggttaagggaacggaacccaccggagccgtagcgaa 121 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 47317 ccggcgactcataggcagtggcttggttaagggaacggaacccaccggagccgtagcgaa 47258 Query: 122 agcgagtcttaatagggcgattgtcactgcttatggacccgaacctgggtgatctatcca 181 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 47257 agcgagtcttcatagggcgattgtcactgcttatggacccgaacctgggtgatctatcca 47198 Query: 182 tgacca 187 |||||| Sbjct: 47197 tgacca 47192
>dbj|AP003280.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0557A01 Length = 147201 Score = 353 bits (178), Expect = 1e-94 Identities = 184/186 (98%) Strand = Plus / Plus Query: 2 gagctcccaaccagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgag 61 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 71361 gagctcccaagcagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgag 71420 Query: 62 ccggcgactcataggcagtggcttggttaagggaacggaacccaccggagccgtagcgaa 121 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 71421 ccggcgactcataggcagtggcttggttaagggaacggaacccaccggagccgtagcgaa 71480 Query: 122 agcgagtcttaatagggcgattgtcactgcttatggacccgaacctgggtgatctatcca 181 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 71481 agcgagtcttcatagggcgattgtcactgcttatggacccgaacctgggtgatctatcca 71540 Query: 182 tgacca 187 |||||| Sbjct: 71541 tgacca 71546
>dbj|AK119504.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-134-E12, full insert sequence Length = 1517 Score = 353 bits (178), Expect = 1e-94 Identities = 184/186 (98%) Strand = Plus / Plus Query: 2 gagctcccaaccagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgag 61 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 325 gagctcccaagcagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgag 384 Query: 62 ccggcgactcataggcagtggcttggttaagggaacggaacccaccggagccgtagcgaa 121 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 385 ccggcgactcataggcagtggcttggttaagggaacggaacccaccggagccgtagcgaa 444 Query: 122 agcgagtcttaatagggcgattgtcactgcttatggacccgaacctgggtgatctatcca 181 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 445 agcgagtcttcatagggcgattgtcactgcttatggacccgaacctgggtgatctatcca 504 Query: 182 tgacca 187 |||||| Sbjct: 505 tgacca 510
>dbj|AK107087.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-121-G07, full insert sequence Length = 1935 Score = 353 bits (178), Expect = 1e-94 Identities = 184/186 (98%) Strand = Plus / Plus Query: 2 gagctcccaaccagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgag 61 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 133 gagctcccaagcagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgag 192 Query: 62 ccggcgactcataggcagtggcttggttaagggaacggaacccaccggagccgtagcgaa 121 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 193 ccggcgactcataggcagtggcttggttaagggaacggaacccaccggagccgtagcgaa 252 Query: 122 agcgagtcttaatagggcgattgtcactgcttatggacccgaacctgggtgatctatcca 181 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 253 agcgagtcttcatagggcgattgtcactgcttatggacccgaacctgggtgatctatcca 312 Query: 182 tgacca 187 |||||| Sbjct: 313 tgacca 318
>dbj|AK106979.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-119-H06, full insert sequence Length = 1684 Score = 353 bits (178), Expect = 1e-94 Identities = 184/186 (98%) Strand = Plus / Plus Query: 2 gagctcccaaccagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgag 61 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 533 gagctcccaagcagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgag 592 Query: 62 ccggcgactcataggcagtggcttggttaagggaacggaacccaccggagccgtagcgaa 121 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 593 ccggcgactcataggcagtggcttggttaagggaacggaacccaccggagccgtagcgaa 652 Query: 122 agcgagtcttaatagggcgattgtcactgcttatggacccgaacctgggtgatctatcca 181 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 653 agcgagtcttcatagggcgattgtcactgcttatggacccgaacctgggtgatctatcca 712 Query: 182 tgacca 187 |||||| Sbjct: 713 tgacca 718
>dbj|AK105837.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-203-F02, full insert sequence Length = 1822 Score = 353 bits (178), Expect = 1e-94 Identities = 184/186 (98%) Strand = Plus / Plus Query: 2 gagctcccaaccagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgag 61 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 436 gagctcccaagcagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgag 495 Query: 62 ccggcgactcataggcagtggcttggttaagggaacggaacccaccggagccgtagcgaa 121 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 496 ccggcgactcataggcagtggcttggttaagggaacggaacccaccggagccgtagcgaa 555 Query: 122 agcgagtcttaatagggcgattgtcactgcttatggacccgaacctgggtgatctatcca 181 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 556 agcgagtcttcatagggcgattgtcactgcttatggacccgaacctgggtgatctatcca 615 Query: 182 tgacca 187 |||||| Sbjct: 616 tgacca 621
>dbj|AK105744.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-202-B04, full insert sequence Length = 2390 Score = 353 bits (178), Expect = 1e-94 Identities = 184/186 (98%) Strand = Plus / Plus Query: 2 gagctcccaaccagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgag 61 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 328 gagctcccaagcagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgag 387 Query: 62 ccggcgactcataggcagtggcttggttaagggaacggaacccaccggagccgtagcgaa 121 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 388 ccggcgactcataggcagtggcttggttaagggaacggaacccaccggagccgtagcgaa 447 Query: 122 agcgagtcttaatagggcgattgtcactgcttatggacccgaacctgggtgatctatcca 181 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 448 agcgagtcttcatagggcgattgtcactgcttatggacccgaacctgggtgatctatcca 507 Query: 182 tgacca 187 |||||| Sbjct: 508 tgacca 513
>dbj|AK104167.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-212-D12, full insert sequence Length = 1223 Score = 353 bits (178), Expect = 1e-94 Identities = 184/186 (98%) Strand = Plus / Plus Query: 2 gagctcccaaccagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgag 61 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 440 gagctcccaagcagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgag 499 Query: 62 ccggcgactcataggcagtggcttggttaagggaacggaacccaccggagccgtagcgaa 121 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 500 ccggcgactcataggcagtggcttggttaagggaacggaacccaccggagccgtagcgaa 559 Query: 122 agcgagtcttaatagggcgattgtcactgcttatggacccgaacctgggtgatctatcca 181 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 560 agcgagtcttcatagggcgattgtcactgcttatggacccgaacctgggtgatctatcca 619 Query: 182 tgacca 187 |||||| Sbjct: 620 tgacca 625
>dbj|AK063769.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-121-B10, full insert sequence Length = 2589 Score = 353 bits (178), Expect = 1e-94 Identities = 184/186 (98%) Strand = Plus / Plus Query: 2 gagctcccaaccagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgag 61 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 199 gagctcccaagcagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgag 258 Query: 62 ccggcgactcataggcagtggcttggttaagggaacggaacccaccggagccgtagcgaa 121 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 259 ccggcgactcataggcagtggcttggttaagggaacggaacccaccggagccgtagcgaa 318 Query: 122 agcgagtcttaatagggcgattgtcactgcttatggacccgaacctgggtgatctatcca 181 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 319 agcgagtcttcatagggcgattgtcactgcttatggacccgaacctgggtgatctatcca 378 Query: 182 tgacca 187 |||||| Sbjct: 379 tgacca 384
>dbj|AK060845.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-D12, full insert sequence Length = 1463 Score = 353 bits (178), Expect = 1e-94 Identities = 184/186 (98%) Strand = Plus / Plus Query: 2 gagctcccaaccagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgag 61 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 327 gagctcccaagcagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgag 386 Query: 62 ccggcgactcataggcagtggcttggttaagggaacggaacccaccggagccgtagcgaa 121 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 387 ccggcgactcataggcagtggcttggttaagggaacggaacccaccggagccgtagcgaa 446 Query: 122 agcgagtcttaatagggcgattgtcactgcttatggacccgaacctgggtgatctatcca 181 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 447 agcgagtcttcatagggcgattgtcactgcttatggacccgaacctgggtgatctatcca 506 Query: 182 tgacca 187 |||||| Sbjct: 507 tgacca 512
>dbj|AK060454.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-011-G07, full insert sequence Length = 1109 Score = 353 bits (178), Expect = 1e-94 Identities = 184/186 (98%) Strand = Plus / Plus Query: 2 gagctcccaaccagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgag 61 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 330 gagctcccaagcagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgag 389 Query: 62 ccggcgactcataggcagtggcttggttaagggaacggaacccaccggagccgtagcgaa 121 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 390 ccggcgactcataggcagtggcttggttaagggaacggaacccaccggagccgtagcgaa 449 Query: 122 agcgagtcttaatagggcgattgtcactgcttatggacccgaacctgggtgatctatcca 181 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 450 agcgagtcttcatagggcgattgtcactgcttatggacccgaacctgggtgatctatcca 509 Query: 182 tgacca 187 |||||| Sbjct: 510 tgacca 515
>dbj|AK059219.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-024-C12, full insert sequence Length = 1634 Score = 353 bits (178), Expect = 1e-94 Identities = 184/186 (98%) Strand = Plus / Plus Query: 2 gagctcccaaccagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgag 61 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 149 gagctcccaagcagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgag 208 Query: 62 ccggcgactcataggcagtggcttggttaagggaacggaacccaccggagccgtagcgaa 121 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 209 ccggcgactcataggcagtggcttggttaagggaacggaacccaccggagccgtagcgaa 268 Query: 122 agcgagtcttaatagggcgattgtcactgcttatggacccgaacctgggtgatctatcca 181 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 269 agcgagtcttcatagggcgattgtcactgcttatggacccgaacctgggtgatctatcca 328 Query: 182 tgacca 187 |||||| Sbjct: 329 tgacca 334
>dbj|AK059208.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-024-B06, full insert sequence Length = 1896 Score = 353 bits (178), Expect = 1e-94 Identities = 184/186 (98%) Strand = Plus / Plus Query: 2 gagctcccaaccagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgag 61 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 328 gagctcccaagcagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgag 387 Query: 62 ccggcgactcataggcagtggcttggttaagggaacggaacccaccggagccgtagcgaa 121 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 388 ccggcgactcataggcagtggcttggttaagggaacggaacccaccggagccgtagcgaa 447 Query: 122 agcgagtcttaatagggcgattgtcactgcttatggacccgaacctgggtgatctatcca 181 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 448 agcgagtcttcatagggcgattgtcactgcttatggacccgaacctgggtgatctatcca 507 Query: 182 tgacca 187 |||||| Sbjct: 508 tgacca 513
>dbj|AK059024.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-021-B07, full insert sequence Length = 1462 Score = 353 bits (178), Expect = 1e-94 Identities = 184/186 (98%) Strand = Plus / Plus Query: 2 gagctcccaaccagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgag 61 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 330 gagctcccaagcagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgag 389 Query: 62 ccggcgactcataggcagtggcttggttaagggaacggaacccaccggagccgtagcgaa 121 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 390 ccggcgactcataggcagtggcttggttaagggaacggaacccaccggagccgtagcgaa 449 Query: 122 agcgagtcttaatagggcgattgtcactgcttatggacccgaacctgggtgatctatcca 181 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 450 agcgagtcttcatagggcgattgtcactgcttatggacccgaacctgggtgatctatcca 509 Query: 182 tgacca 187 |||||| Sbjct: 510 tgacca 515
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 353 bits (178), Expect = 1e-94 Identities = 184/186 (98%) Strand = Plus / Plus Query: 2 gagctcccaaccagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgag 61 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 19949942 gagctcccaagcagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgag 19950001 Query: 62 ccggcgactcataggcagtggcttggttaagggaacggaacccaccggagccgtagcgaa 121 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 19950002 ccggcgactcataggcagtggcttggttaagggaacggaacccaccggagccgtagcgaa 19950061 Query: 122 agcgagtcttaatagggcgattgtcactgcttatggacccgaacctgggtgatctatcca 181 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 19950062 agcgagtcttcatagggcgattgtcactgcttatggacccgaacctgggtgatctatcca 19950121 Query: 182 tgacca 187 |||||| Sbjct: 19950122 tgacca 19950127 Score = 353 bits (178), Expect = 1e-94 Identities = 184/186 (98%) Strand = Plus / Plus Query: 2 gagctcccaaccagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgag 61 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10393572 gagctcccaagcagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgag 10393631 Query: 62 ccggcgactcataggcagtggcttggttaagggaacggaacccaccggagccgtagcgaa 121 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10393632 ccggcgactcataggcagtggcttggttaagggaacggaacccaccggagccgtagcgaa 10393691 Query: 122 agcgagtcttaatagggcgattgtcactgcttatggacccgaacctgggtgatctatcca 181 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10393692 agcgagtcttcatagggcgattgtcactgcttatggacccgaacctgggtgatctatcca 10393751 Query: 182 tgacca 187 |||||| Sbjct: 10393752 tgacca 10393757 Score = 353 bits (178), Expect = 1e-94 Identities = 184/186 (98%) Strand = Plus / Minus Query: 2 gagctcccaaccagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgag 61 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10282804 gagctcccaagcagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgag 10282745 Query: 62 ccggcgactcataggcagtggcttggttaagggaacggaacccaccggagccgtagcgaa 121 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10282744 ccggcgactcataggcagtggcttggttaagggaacggaacccaccggagccgtagcgaa 10282685 Query: 122 agcgagtcttaatagggcgattgtcactgcttatggacccgaacctgggtgatctatcca 181 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10282684 agcgagtcttcatagggcgattgtcactgcttatggacccgaacctgggtgatctatcca 10282625 Query: 182 tgacca 187 |||||| Sbjct: 10282624 tgacca 10282619
>dbj|AP006728.1| Oryza nivara chloroplast DNA, complete genome Length = 134494 Score = 353 bits (178), Expect = 1e-94 Identities = 184/186 (98%) Strand = Plus / Minus Query: 2 gagctcccaaccagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgag 61 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 119345 gagctcccaagcagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgag 119286 Query: 62 ccggcgactcataggcagtggcttggttaagggaacggaacccaccggagccgtagcgaa 121 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 119285 ccggcgactcataggcagtggcttggttaagggaacggaacccaccggagccgtagcgaa 119226 Query: 122 agcgagtcttaatagggcgattgtcactgcttatggacccgaacctgggtgatctatcca 181 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 119225 agcgagtcttcatagggcgattgtcactgcttatggacccgaacctgggtgatctatcca 119166 Query: 182 tgacca 187 |||||| Sbjct: 119165 tgacca 119160 Score = 353 bits (178), Expect = 1e-94 Identities = 184/186 (98%) Strand = Plus / Plus Query: 2 gagctcccaaccagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgag 61 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 95694 gagctcccaagcagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgag 95753 Query: 62 ccggcgactcataggcagtggcttggttaagggaacggaacccaccggagccgtagcgaa 121 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 95754 ccggcgactcataggcagtggcttggttaagggaacggaacccaccggagccgtagcgaa 95813 Query: 122 agcgagtcttaatagggcgattgtcactgcttatggacccgaacctgggtgatctatcca 181 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 95814 agcgagtcttcatagggcgattgtcactgcttatggacccgaacctgggtgatctatcca 95873 Query: 182 tgacca 187 |||||| Sbjct: 95874 tgacca 95879
>gb|DQ490949.1| Festuca arundinacea 23S ribosomal RNA gene, partial sequence; chloroplast Length = 982 Score = 345 bits (174), Expect = 3e-92 Identities = 183/186 (98%) Strand = Plus / Minus Query: 2 gagctcccaaccagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgag 61 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 448 gagctcccaagcagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgag 389 Query: 62 ccggcgactcataggcagtggcttggttaagggaacggaacccaccggagccgtagcgaa 121 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 388 ccggcgactcataggcagtggcttggttaagggaatggaacccaccggagccgtagcgaa 329 Query: 122 agcgagtcttaatagggcgattgtcactgcttatggacccgaacctgggtgatctatcca 181 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 328 agcgagtcttcatagggcgattgtcactgcttatggacccgaacctgggtgatctatcca 269 Query: 182 tgacca 187 |||||| Sbjct: 268 tgacca 263
>emb|X86563.2|ZMA86563 Zea mays complete chloroplast genome Length = 140384 Score = 345 bits (174), Expect = 3e-92 Identities = 183/186 (98%) Strand = Plus / Minus Query: 2 gagctcccaaccagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgag 61 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 123141 gagctcccaagcagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgag 123082 Query: 62 ccggcgactcataggcagtggcttggttaagggaacggaacccaccggagccgtagcgaa 121 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 123081 ccggcgactcataggcagtggcttggttaagggaatggaacccaccggagccgtagcgaa 123022 Query: 122 agcgagtcttaatagggcgattgtcactgcttatggacccgaacctgggtgatctatcca 181 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 123021 agcgagtcttcatagggcgattgtcactgcttatggacccgaacctgggtgatctatcca 122962 Query: 182 tgacca 187 |||||| Sbjct: 122961 tgacca 122956 Score = 345 bits (174), Expect = 3e-92 Identities = 183/186 (98%) Strand = Plus / Plus Query: 2 gagctcccaaccagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgag 61 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 99596 gagctcccaagcagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgag 99655 Query: 62 ccggcgactcataggcagtggcttggttaagggaacggaacccaccggagccgtagcgaa 121 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 99656 ccggcgactcataggcagtggcttggttaagggaatggaacccaccggagccgtagcgaa 99715 Query: 122 agcgagtcttaatagggcgattgtcactgcttatggacccgaacctgggtgatctatcca 181 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 99716 agcgagtcttcatagggcgattgtcactgcttatggacccgaacctgggtgatctatcca 99775 Query: 182 tgacca 187 |||||| Sbjct: 99776 tgacca 99781
>gb|AE009947.2| Saccharum hybrid cultivar SP-80-3280 chloroplast, complete genome Length = 141182 Score = 345 bits (174), Expect = 3e-92 Identities = 183/186 (98%) Strand = Plus / Plus Query: 2 gagctcccaaccagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgag 61 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 20756 gagctcccaagcagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgag 20815 Query: 62 ccggcgactcataggcagtggcttggttaagggaacggaacccaccggagccgtagcgaa 121 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 20816 ccggcgactcataggcagtggcttggttaagggaatggaacccaccggagccgtagcgaa 20875 Query: 122 agcgagtcttaatagggcgattgtcactgcttatggacccgaacctgggtgatctatcca 181 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 20876 agcgagtcttcatagggcgattgtcactgcttatggacccgaacctgggtgatctatcca 20935 Query: 182 tgacca 187 |||||| Sbjct: 20936 tgacca 20941 Score = 329 bits (166), Expect = 2e-87 Identities = 181/186 (97%) Strand = Plus / Minus Query: 2 gagctcccaaccagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgag 61 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 44362 gagctcccaagcagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgag 44303 Query: 62 ccggcgactcataggcagtggcttggttaagggaacggaacccaccggagccgtagcgaa 121 ||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| ||| Sbjct: 44302 ccggcgactcataggcagtggcttggttaagggaatggaaccctccggagccgtagtgaa 44243 Query: 122 agcgagtcttaatagggcgattgtcactgcttatggacccgaacctgggtgatctatcca 181 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 44242 agcgagtcttcatagggcgattgtcactgcttatggacccgaacctgggtgatctatcca 44183 Query: 182 tgacca 187 |||||| Sbjct: 44182 tgacca 44177
>gb|AY082604.1| Saccharum hybrid cultivar 23S ribosomal RNA gene, partial sequence; tRNA-Ala (trnA) gene, complete sequence; hypothetical protein gene, complete cds; ACR pseudogene, complete sequence; tRNA-Ile (trnI) gene, partial sequence; and ORF72 pseudogene, partial sequence; chloroplast genes for chloroplast products Length = 3026 Score = 345 bits (174), Expect = 3e-92 Identities = 183/186 (98%) Strand = Plus / Minus Query: 2 gagctcccaaccagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgag 61 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 991 gagctcccaagcagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgag 932 Query: 62 ccggcgactcataggcagtggcttggttaagggaacggaacccaccggagccgtagcgaa 121 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 931 ccggcgactcataggcagtggcttggttaagggaatggaacccaccggagccgtagcgaa 872 Query: 122 agcgagtcttaatagggcgattgtcactgcttatggacccgaacctgggtgatctatcca 181 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 871 agcgagtcttcatagggcgattgtcactgcttatggacccgaacctgggtgatctatcca 812 Query: 182 tgacca 187 |||||| Sbjct: 811 tgacca 806
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 345 bits (174), Expect = 3e-92 Identities = 183/186 (98%) Strand = Plus / Minus Query: 2 gagctcccaaccagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgag 61 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9241600 gagctcccaagcagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgag 9241541 Query: 62 ccggcgactcataggcagtggcttggttaagggaacggaacccaccggagccgtagcgaa 121 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9241540 ctggcgactcataggcagtggcttggttaagggaacggaacccaccggagccgtagcgaa 9241481 Query: 122 agcgagtcttaatagggcgattgtcactgcttatggacccgaacctgggtgatctatcca 181 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9241480 agcgagtcttcatagggcgattgtcactgcttatggacccgaacctgggtgatctatcca 9241421 Query: 182 tgacca 187 |||||| Sbjct: 9241420 tgacca 9241415
>gb|AY928077.1| Zea mays cultivar B73 chloroplast, complete genome Length = 140454 Score = 345 bits (174), Expect = 3e-92 Identities = 183/186 (98%) Strand = Plus / Minus Query: 2 gagctcccaaccagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgag 61 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 123201 gagctcccaagcagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgag 123142 Query: 62 ccggcgactcataggcagtggcttggttaagggaacggaacccaccggagccgtagcgaa 121 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 123141 ccggcgactcataggcagtggcttggttaagggaatggaacccaccggagccgtagcgaa 123082 Query: 122 agcgagtcttaatagggcgattgtcactgcttatggacccgaacctgggtgatctatcca 181 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 123081 agcgagtcttcatagggcgattgtcactgcttatggacccgaacctgggtgatctatcca 123022 Query: 182 tgacca 187 |||||| Sbjct: 123021 tgacca 123016 Score = 345 bits (174), Expect = 3e-92 Identities = 183/186 (98%) Strand = Plus / Plus Query: 2 gagctcccaaccagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgag 61 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 99636 gagctcccaagcagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgag 99695 Query: 62 ccggcgactcataggcagtggcttggttaagggaacggaacccaccggagccgtagcgaa 121 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 99696 ccggcgactcataggcagtggcttggttaagggaatggaacccaccggagccgtagcgaa 99755 Query: 122 agcgagtcttaatagggcgattgtcactgcttatggacccgaacctgggtgatctatcca 181 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 99756 agcgagtcttcatagggcgattgtcactgcttatggacccgaacctgggtgatctatcca 99815 Query: 182 tgacca 187 |||||| Sbjct: 99816 tgacca 99821
>dbj|AP005161.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0036E18 Length = 141148 Score = 345 bits (174), Expect = 3e-92 Identities = 183/186 (98%) Strand = Plus / Minus Query: 2 gagctcccaaccagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgag 61 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 52813 gagctcccaagcagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgag 52754 Query: 62 ccggcgactcataggcagtggcttggttaagggaacggaacccaccggagccgtagcgaa 121 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 52753 ctggcgactcataggcagtggcttggttaagggaacggaacccaccggagccgtagcgaa 52694 Query: 122 agcgagtcttaatagggcgattgtcactgcttatggacccgaacctgggtgatctatcca 181 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 52693 agcgagtcttcatagggcgattgtcactgcttatggacccgaacctgggtgatctatcca 52634 Query: 182 tgacca 187 |||||| Sbjct: 52633 tgacca 52628
>emb|Z00028.1|CHZMRRNA Zea mays chloroplast rRNA-operon Length = 8862 Score = 345 bits (174), Expect = 3e-92 Identities = 183/186 (98%) Strand = Plus / Plus Query: 2 gagctcccaaccagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgag 61 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5949 gagctcccaagcagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgag 6008 Query: 62 ccggcgactcataggcagtggcttggttaagggaacggaacccaccggagccgtagcgaa 121 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 6009 ccggcgactcataggcagtggcttggttaagggaatggaacccaccggagccgtagcgaa 6068 Query: 122 agcgagtcttaatagggcgattgtcactgcttatggacccgaacctgggtgatctatcca 181 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6069 agcgagtcttcatagggcgattgtcactgcttatggacccgaacctgggtgatctatcca 6128 Query: 182 tgacca 187 |||||| Sbjct: 6129 tgacca 6134
>dbj|AP006714.1| Saccharum officinarum chloroplast DNA, complete genome Length = 141182 Score = 345 bits (174), Expect = 3e-92 Identities = 183/186 (98%) Strand = Plus / Minus Query: 2 gagctcccaaccagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgag 61 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 123918 gagctcccaagcagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgag 123859 Query: 62 ccggcgactcataggcagtggcttggttaagggaacggaacccaccggagccgtagcgaa 121 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 123858 ccggcgactcataggcagtggcttggttaagggaatggaacccaccggagccgtagcgaa 123799 Query: 122 agcgagtcttaatagggcgattgtcactgcttatggacccgaacctgggtgatctatcca 181 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 123798 agcgagtcttcatagggcgattgtcactgcttatggacccgaacctgggtgatctatcca 123739 Query: 182 tgacca 187 |||||| Sbjct: 123738 tgacca 123733 Score = 345 bits (174), Expect = 3e-92 Identities = 183/186 (98%) Strand = Plus / Plus Query: 2 gagctcccaaccagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgag 61 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 100313 gagctcccaagcagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgag 100372 Query: 62 ccggcgactcataggcagtggcttggttaagggaacggaacccaccggagccgtagcgaa 121 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 100373 ccggcgactcataggcagtggcttggttaagggaatggaacccaccggagccgtagcgaa 100432 Query: 122 agcgagtcttaatagggcgattgtcactgcttatggacccgaacctgggtgatctatcca 181 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 100433 agcgagtcttcatagggcgattgtcactgcttatggacccgaacctgggtgatctatcca 100492 Query: 182 tgacca 187 |||||| Sbjct: 100493 tgacca 100498
>emb|X01365.1|CHZM23S Maize chloroplast DNA for 4.5S and 23S ribosomal RNA Length = 3079 Score = 345 bits (174), Expect = 3e-92 Identities = 183/186 (98%) Strand = Plus / Plus Query: 2 gagctcccaaccagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgag 61 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 537 gagctcccaagcagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgag 596 Query: 62 ccggcgactcataggcagtggcttggttaagggaacggaacccaccggagccgtagcgaa 121 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 597 ccggcgactcataggcagtggcttggttaagggaatggaacccaccggagccgtagcgaa 656 Query: 122 agcgagtcttaatagggcgattgtcactgcttatggacccgaacctgggtgatctatcca 181 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 657 agcgagtcttcatagggcgattgtcactgcttatggacccgaacctgggtgatctatcca 716 Query: 182 tgacca 187 |||||| Sbjct: 717 tgacca 722
>gb|AC136521.2| Oryza sativa (japonica cultivar-group) chromosome 5 BAC clone OSJNBa0034M22, complete sequence Length = 149435 Score = 327 bits (165), Expect = 7e-87 Identities = 183/188 (97%), Gaps = 2/188 (1%) Strand = Plus / Minus Query: 2 gagctcccaaccagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgag 61 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 122683 gagctcccaagcagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgag 122624 Query: 62 ccggcgactcataggcagtg--gcttggttaagggaacggaacccaccggagccgtagcg 119 |||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 122623 ccggtgactcataggcagtgtggcttggttaagggaacggaacccaccggagccgtagcg 122564 Query: 120 aaagcgagtcttaatagggcgattgtcactgcttatggacccgaacctgggtgatctatc 179 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 122563 aaagcgagtcttcatagggcgattgtcactgcttatggacccgaacctgggtgatctatc 122504 Query: 180 catgacca 187 |||||||| Sbjct: 122503 catgacca 122496
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 327 bits (165), Expect = 7e-87 Identities = 183/188 (97%), Gaps = 2/188 (1%) Strand = Plus / Minus Query: 2 gagctcccaaccagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgag 61 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 12825224 gagctcccaagcagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgag 12825165 Query: 62 ccggcgactcataggcagtg--gcttggttaagggaacggaacccaccggagccgtagcg 119 |||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 12825164 ccggtgactcataggcagtgtggcttggttaagggaacggaacccaccggagccgtagcg 12825105 Query: 120 aaagcgagtcttaatagggcgattgtcactgcttatggacccgaacctgggtgatctatc 179 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 12825104 aaagcgagtcttcatagggcgattgtcactgcttatggacccgaacctgggtgatctatc 12825045 Query: 180 catgacca 187 |||||||| Sbjct: 12825044 catgacca 12825037
>gb|AY506529.1| Zea mays strain NB mitochondrion, complete genome Length = 569630 Score = 321 bits (162), Expect = 4e-85 Identities = 168/170 (98%) Strand = Plus / Minus Query: 18 ggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgagccggcgactcataggc 77 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 75153 ggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgagccggcgactcataggc 75094 Query: 78 agtggcttggttaagggaacggaacccaccggagccgtagcgaaagcgagtcttaatagg 137 ||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| Sbjct: 75093 agtggcttggttaagggaatggaacccaccggagccgtagcgaaagcgagtcttcatagg 75034 Query: 138 gcgattgtcactgcttatggacccgaacctgggtgatctatccatgacca 187 |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 75033 gcgattgtcactgcttatggacccgaacctgggtgatctatccatgacca 74984
>gb|DQ490952.1| Zea mays subsp. mays genotype male-fertile NA mitochondrion, complete genome Length = 701046 Score = 321 bits (162), Expect = 4e-85 Identities = 168/170 (98%) Strand = Plus / Plus Query: 18 ggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgagccggcgactcataggc 77 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 382385 ggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgagccggcgactcataggc 382444 Query: 78 agtggcttggttaagggaacggaacccaccggagccgtagcgaaagcgagtcttaatagg 137 ||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| Sbjct: 382445 agtggcttggttaagggaatggaacccaccggagccgtagcgaaagcgagtcttcatagg 382504 Query: 138 gcgattgtcactgcttatggacccgaacctgggtgatctatccatgacca 187 |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 382505 gcgattgtcactgcttatggacccgaacctgggtgatctatccatgacca 382554
>gb|DQ490951.1| Zea mays subsp. mays genotype CMS-S mitochondrion, complete genome Length = 569553 Score = 321 bits (162), Expect = 4e-85 Identities = 168/170 (98%) Strand = Plus / Minus Query: 18 ggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgagccggcgactcataggc 77 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 113244 ggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgagccggcgactcataggc 113185 Query: 78 agtggcttggttaagggaacggaacccaccggagccgtagcgaaagcgagtcttaatagg 137 ||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| Sbjct: 113184 agtggcttggttaagggaatggaacccaccggagccgtagcgaaagcgagtcttcatagg 113125 Query: 138 gcgattgtcactgcttatggacccgaacctgggtgatctatccatgacca 187 |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 113124 gcgattgtcactgcttatggacccgaacctgggtgatctatccatgacca 113075
>gb|DQ490953.1| Zea mays subsp. mays genotype CMS-T mitochondrion, complete genome Length = 535825 Score = 321 bits (162), Expect = 4e-85 Identities = 168/170 (98%) Strand = Plus / Minus Query: 18 ggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgagccggcgactcataggc 77 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 367926 ggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgagccggcgactcataggc 367867 Query: 78 agtggcttggttaagggaacggaacccaccggagccgtagcgaaagcgagtcttaatagg 137 ||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| Sbjct: 367866 agtggcttggttaagggaatggaacccaccggagccgtagcgaaagcgagtcttcatagg 367807 Query: 138 gcgattgtcactgcttatggacccgaacctgggtgatctatccatgacca 187 |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 367806 gcgattgtcactgcttatggacccgaacctgggtgatctatccatgacca 367757 Score = 321 bits (162), Expect = 4e-85 Identities = 168/170 (98%) Strand = Plus / Minus Query: 18 ggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgagccggcgactcataggc 77 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 184531 ggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgagccggcgactcataggc 184472 Query: 78 agtggcttggttaagggaacggaacccaccggagccgtagcgaaagcgagtcttaatagg 137 ||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| Sbjct: 184471 agtggcttggttaagggaatggaacccaccggagccgtagcgaaagcgagtcttcatagg 184412 Query: 138 gcgattgtcactgcttatggacccgaacctgggtgatctatccatgacca 187 |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 184411 gcgattgtcactgcttatggacccgaacctgggtgatctatccatgacca 184362
>emb|AJ879453.1| Acorus calamus chloroplast, complete genome Length = 153821 Score = 295 bits (149), Expect = 2e-77 Identities = 176/185 (95%), Gaps = 5/185 (2%) Strand = Plus / Minus Query: 3 agctcccaaccagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgagc 62 ||||||||| |||||||||| ||| ||||||||||||||||||||||||||||||||||| Sbjct: 133691 agctcccaagcagtgggaggagaatgtgatctctgaccgcgtgcctgttgaagaatgagc 133632 Query: 63 cggcgactcataggcagtggcttggttaagggaacggaacccaccggagccgtagcgaaa 122 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 133631 cggcgactcataggcagtggcttggttaagggaac-----ccaccggagccgtagcgaaa 133577 Query: 123 gcgagtcttaatagggcgattgtcactgcttatggacccgaacctgggtgatctatccat 182 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 133576 gcgagtcttcatagggcgattgtcactgcttatggacccgaacctgggtgatctatccat 133517 Query: 183 gacca 187 ||||| Sbjct: 133516 gacca 133512 Score = 295 bits (149), Expect = 2e-77 Identities = 176/185 (95%), Gaps = 5/185 (2%) Strand = Plus / Plus Query: 3 agctcccaaccagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgagc 62 ||||||||| |||||||||| ||| ||||||||||||||||||||||||||||||||||| Sbjct: 104280 agctcccaagcagtgggaggagaatgtgatctctgaccgcgtgcctgttgaagaatgagc 104339 Query: 63 cggcgactcataggcagtggcttggttaagggaacggaacccaccggagccgtagcgaaa 122 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 104340 cggcgactcataggcagtggcttggttaagggaac-----ccaccggagccgtagcgaaa 104394 Query: 123 gcgagtcttaatagggcgattgtcactgcttatggacccgaacctgggtgatctatccat 182 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 104395 gcgagtcttcatagggcgattgtcactgcttatggacccgaacctgggtgatctatccat 104454 Query: 183 gacca 187 ||||| Sbjct: 104455 gacca 104459
>emb|AJ506156.2|ATR506156 Amborella trichopoda chloroplast genomic DNA, complete sequence Length = 162686 Score = 281 bits (142), Expect = 4e-73 Identities = 175/186 (94%), Gaps = 5/186 (2%) Strand = Plus / Minus Query: 2 gagctcccaaccagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgag 61 |||||||||| |||||||||| ||| ||||||||||||||||||||||||||||||||| Sbjct: 141577 gagctcccaagcagtgggaggagaatttgatctctgaccgcgtgcctgttgaagaatgag 141518 Query: 62 ccggcgactcataggcagtggcttggttaagggaacggaacccaccggagccgtagcgaa 121 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 141517 ccggcgactcataggcagtggcttggttaagggaac-----ccaccggagccgtagcgaa 141463 Query: 122 agcgagtcttaatagggcgattgtcactgcttatggacccgaacctgggtgatctatcca 181 |||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 141462 agcgagtcttcatagggcaattgtcactgcttatggacccgaacctgggtgatctatcca 141403 Query: 182 tgacca 187 |||||| Sbjct: 141402 tgacca 141397 Score = 281 bits (142), Expect = 4e-73 Identities = 175/186 (94%), Gaps = 5/186 (2%) Strand = Plus / Plus Query: 2 gagctcccaaccagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgag 61 |||||||||| |||||||||| ||| ||||||||||||||||||||||||||||||||| Sbjct: 112080 gagctcccaagcagtgggaggagaatttgatctctgaccgcgtgcctgttgaagaatgag 112139 Query: 62 ccggcgactcataggcagtggcttggttaagggaacggaacccaccggagccgtagcgaa 121 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 112140 ccggcgactcataggcagtggcttggttaagggaac-----ccaccggagccgtagcgaa 112194 Query: 122 agcgagtcttaatagggcgattgtcactgcttatggacccgaacctgggtgatctatcca 181 |||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 112195 agcgagtcttcatagggcaattgtcactgcttatggacccgaacctgggtgatctatcca 112254 Query: 182 tgacca 187 |||||| Sbjct: 112255 tgacca 112260
>gb|AY916449.1| Phalaenopsis aphrodite subsp. formosana plastid, complete genome Length = 148964 Score = 281 bits (142), Expect = 4e-73 Identities = 175/186 (94%), Gaps = 5/186 (2%) Strand = Plus / Minus Query: 2 gagctcccaaccagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgag 61 |||||||||| |||||||||| ||| |||||||||||||||||||||||||||||||||| Sbjct: 127333 gagctcccaagcagtgggaggagaatgtgatctctgaccgcgtgcctgttgaagaatgag 127274 Query: 62 ccggcgactcataggcagtggcttggttaagggaacggaacccaccggagccgtagcgaa 121 ||||||||||||||||||||||||||||||||||| |||||| |||||||||||| Sbjct: 127273 ccggcgactcataggcagtggcttggttaagggaat-----ccaccgtagccgtagcgaa 127219 Query: 122 agcgagtcttaatagggcgattgtcactgcttatggacccgaacctgggtgatctatcca 181 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 127218 agcgagtcttcatagggcgattgtcactgcttatggacccgaacctgggtgatctatcca 127159 Query: 182 tgacca 187 |||||| Sbjct: 127158 tgacca 127153 Score = 281 bits (142), Expect = 4e-73 Identities = 175/186 (94%), Gaps = 5/186 (2%) Strand = Plus / Plus Query: 2 gagctcccaaccagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgag 61 |||||||||| |||||||||| ||| |||||||||||||||||||||||||||||||||| Sbjct: 107589 gagctcccaagcagtgggaggagaatgtgatctctgaccgcgtgcctgttgaagaatgag 107648 Query: 62 ccggcgactcataggcagtggcttggttaagggaacggaacccaccggagccgtagcgaa 121 ||||||||||||||||||||||||||||||||||| |||||| |||||||||||| Sbjct: 107649 ccggcgactcataggcagtggcttggttaagggaat-----ccaccgtagccgtagcgaa 107703 Query: 122 agcgagtcttaatagggcgattgtcactgcttatggacccgaacctgggtgatctatcca 181 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 107704 agcgagtcttcatagggcgattgtcactgcttatggacccgaacctgggtgatctatcca 107763 Query: 182 tgacca 187 |||||| Sbjct: 107764 tgacca 107769
>emb|AJ627251.1| Nymphaea alba chloroplast, complete genome Length = 159930 Score = 274 bits (138), Expect = 9e-71 Identities = 174/186 (93%), Gaps = 5/186 (2%) Strand = Plus / Minus Query: 2 gagctcccaaccagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgag 61 |||||||||| |||||||||| ||| ||||||||||||||||||||||||||||||||| Sbjct: 139055 gagctcccaagcagtgggaggagaatttgatctctgaccgcgtgcctgttgaagaatgag 138996 Query: 62 ccggcgactcataggcagtggcttggttaagggaacggaacccaccggagccgtagcgaa 121 ||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| Sbjct: 138995 ccggcgactcataggcagtggcttggttaag-----ggaacccaccggagccatagcgaa 138941 Query: 122 agcgagtcttaatagggcgattgtcactgcttatggacccgaacctgggtgatctatcca 181 |||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 138940 agcgagtcttcatagggcaattgtcactgcttatggacccgaacctgggtgatctatcca 138881 Query: 182 tgacca 187 |||||| Sbjct: 138880 tgacca 138875 Score = 274 bits (138), Expect = 9e-71 Identities = 174/186 (93%), Gaps = 5/186 (2%) Strand = Plus / Plus Query: 2 gagctcccaaccagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgag 61 |||||||||| |||||||||| ||| ||||||||||||||||||||||||||||||||| Sbjct: 110890 gagctcccaagcagtgggaggagaatttgatctctgaccgcgtgcctgttgaagaatgag 110949 Query: 62 ccggcgactcataggcagtggcttggttaagggaacggaacccaccggagccgtagcgaa 121 ||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| Sbjct: 110950 ccggcgactcataggcagtggcttggttaag-----ggaacccaccggagccatagcgaa 111004 Query: 122 agcgagtcttaatagggcgattgtcactgcttatggacccgaacctgggtgatctatcca 181 |||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 111005 agcgagtcttcatagggcaattgtcactgcttatggacccgaacctgggtgatctatcca 111064 Query: 182 tgacca 187 |||||| Sbjct: 111065 tgacca 111070
>emb|AJ428413.1|CFE428413 Calycanthus fertilis var. ferax complete chloroplast genome Length = 153337 Score = 264 bits (133), Expect = 9e-68 Identities = 173/186 (93%), Gaps = 9/186 (4%) Strand = Plus / Minus Query: 2 gagctcccaaccagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgag 61 |||||||||| |||||||||| |||| |||||||||||||||||||||||||||||| Sbjct: 134450 gagctcccaagcagtgggaggagaaa----tctctgaccgcgtgcctgttgaagaatgag 134395 Query: 62 ccggcgactcataggcagtggcttggttaagggaacggaacccaccggagccgtagcgaa 121 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 134394 ccggcgactcataggcagtggcttggttaagggaac-----ccaccggagccgtagcgaa 134340 Query: 122 agcgagtcttaatagggcgattgtcactgcttatggacccgaacctgggtgatctatcca 181 |||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 134339 agcgagtcttcatagggcaattgtcactgcttatggacccgaacctgggtgatctatcca 134280 Query: 182 tgacca 187 |||||| Sbjct: 134279 tgacca 134274 Score = 264 bits (133), Expect = 9e-68 Identities = 173/186 (93%), Gaps = 9/186 (4%) Strand = Plus / Plus Query: 2 gagctcccaaccagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgag 61 |||||||||| |||||||||| |||| |||||||||||||||||||||||||||||| Sbjct: 105832 gagctcccaagcagtgggaggagaaa----tctctgaccgcgtgcctgttgaagaatgag 105887 Query: 62 ccggcgactcataggcagtggcttggttaagggaacggaacccaccggagccgtagcgaa 121 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 105888 ccggcgactcataggcagtggcttggttaagggaac-----ccaccggagccgtagcgaa 105942 Query: 122 agcgagtcttaatagggcgattgtcactgcttatggacccgaacctgggtgatctatcca 181 |||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 105943 agcgagtcttcatagggcaattgtcactgcttatggacccgaacctgggtgatctatcca 106002 Query: 182 tgacca 187 |||||| Sbjct: 106003 tgacca 106008
>dbj|AK058324.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-014-B08, full insert sequence Length = 1310 Score = 260 bits (131), Expect = 1e-66 Identities = 134/135 (99%) Strand = Plus / Plus Query: 53 aagaatgagccggcgactcataggcagtggcttggttaagggaacggaacccaccggagc 112 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2 aagaatgagccggcgactcataggcagtggcttggttaagggaacggaacccaccggagc 61 Query: 113 cgtagcgaaagcgagtcttaatagggcgattgtcactgcttatggacccgaacctgggtg 172 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 62 cgtagcgaaagcgagtcttcatagggcgattgtcactgcttatggacccgaacctgggtg 121 Query: 173 atctatccatgacca 187 ||||||||||||||| Sbjct: 122 atctatccatgacca 136
>dbj|AK059795.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-204-E09, full insert sequence Length = 819 Score = 258 bits (130), Expect = 5e-66 Identities = 133/134 (99%) Strand = Plus / Plus Query: 54 agaatgagccggcgactcataggcagtggcttggttaagggaacggaacccaccggagcc 113 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 agaatgagccggcgactcataggcagtggcttggttaagggaacggaacccaccggagcc 60 Query: 114 gtagcgaaagcgagtcttaatagggcgattgtcactgcttatggacccgaacctgggtga 173 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 gtagcgaaagcgagtcttcatagggcgattgtcactgcttatggacccgaacctgggtga 120 Query: 174 tctatccatgacca 187 |||||||||||||| Sbjct: 121 tctatccatgacca 134
>gb|DQ345959.1| Gossypium hirsutum cultivar coker 310 FR chloroplast, complete genome Length = 160301 Score = 252 bits (127), Expect = 3e-64 Identities = 148/155 (95%), Gaps = 5/155 (3%) Strand = Plus / Minus Query: 33 ctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaag 92 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 138943 ctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaag 138884 Query: 93 ggaacggaacccaccggagccgtagcgaaagcgagtcttaatagggcgattgtcactgct 152 ||||| ||||||||||||||||||||||||||||| ||||||| |||||||||||| Sbjct: 138883 ggaac-----ccaccggagccgtagcgaaagcgagtcttcatagggcaattgtcactgct 138829 Query: 153 tatggacccgaacctgggtgatctatccatgacca 187 ||||||||||||||||||||||||||||||||||| Sbjct: 138828 tatggacccgaacctgggtgatctatccatgacca 138794 Score = 252 bits (127), Expect = 3e-64 Identities = 148/155 (95%), Gaps = 5/155 (3%) Strand = Plus / Plus Query: 33 ctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaag 92 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 110154 ctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaag 110213 Query: 93 ggaacggaacccaccggagccgtagcgaaagcgagtcttaatagggcgattgtcactgct 152 ||||| ||||||||||||||||||||||||||||| ||||||| |||||||||||| Sbjct: 110214 ggaac-----ccaccggagccgtagcgaaagcgagtcttcatagggcaattgtcactgct 110268 Query: 153 tatggacccgaacctgggtgatctatccatgacca 187 ||||||||||||||||||||||||||||||||||| Sbjct: 110269 tatggacccgaacctgggtgatctatccatgacca 110303
>gb|BT014358.1| Lycopersicon esculentum clone 133635F, mRNA sequence Length = 838 Score = 252 bits (127), Expect = 3e-64 Identities = 148/155 (95%), Gaps = 5/155 (3%) Strand = Plus / Plus Query: 33 ctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaag 92 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 535 ctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaag 594 Query: 93 ggaacggaacccaccggagccgtagcgaaagcgagtcttaatagggcgattgtcactgct 152 ||||| ||||||||||||||||||||||||||||| ||||||| |||||||||||| Sbjct: 595 ggaac-----ccaccggagccgtagcgaaagcgagtcttcatagggcaattgtcactgct 649 Query: 153 tatggacccgaacctgggtgatctatccatgacca 187 ||||||||||||||||||||||||||||||||||| Sbjct: 650 tatggacccgaacctgggtgatctatccatgacca 684
>gb|DQ176643.1| Vitis pseudoreticulata clone EST-423 23S ribosomal RNA, partial sequence; chloroplast Length = 674 Score = 252 bits (127), Expect = 3e-64 Identities = 148/155 (95%), Gaps = 5/155 (3%) Strand = Plus / Plus Query: 33 ctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaag 92 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 62 ctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaag 121 Query: 93 ggaacggaacccaccggagccgtagcgaaagcgagtcttaatagggcgattgtcactgct 152 ||||| ||||||||||||||||||||||||||||| ||||||| |||||||||||| Sbjct: 122 ggaac-----ccaccggagccgtagcgaaagcgagtcttcatagggcaattgtcactgct 176 Query: 153 tatggacccgaacctgggtgatctatccatgacca 187 ||||||||||||||||||||||||||||||||||| Sbjct: 177 tatggacccgaacctgggtgatctatccatgacca 211
>gb|AY848693.1| Vitis pseudoreticulata clone EST-4 23S ribosomal RNA, partial sequence; chloroplast Length = 673 Score = 252 bits (127), Expect = 3e-64 Identities = 148/155 (95%), Gaps = 5/155 (3%) Strand = Plus / Plus Query: 33 ctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaag 92 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 46 ctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaag 105 Query: 93 ggaacggaacccaccggagccgtagcgaaagcgagtcttaatagggcgattgtcactgct 152 ||||| ||||||||||||||||||||||||||||| ||||||| |||||||||||| Sbjct: 106 ggaac-----ccaccggagccgtagcgaaagcgagtcttcatagggcaattgtcactgct 160 Query: 153 tatggacccgaacctgggtgatctatccatgacca 187 ||||||||||||||||||||||||||||||||||| Sbjct: 161 tatggacccgaacctgggtgatctatccatgacca 195
>gb|DQ383816.1| Lactuca sativa cultivar Salinas chloroplast, complete genome Length = 152772 Score = 252 bits (127), Expect = 3e-64 Identities = 148/155 (95%), Gaps = 5/155 (3%) Strand = Plus / Minus Query: 33 ctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaag 92 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 132214 ctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaag 132155 Query: 93 ggaacggaacccaccggagccgtagcgaaagcgagtcttaatagggcgattgtcactgct 152 ||||| ||||||||||||||||||||||||||||| ||||||| |||||||||||| Sbjct: 132154 ggaac-----ccaccggagccgtagcgaaagcgagtcttcatagggcaattgtcactgct 132100 Query: 153 tatggacccgaacctgggtgatctatccatgacca 187 ||||||||||||||||||||||||||||||||||| Sbjct: 132099 tatggacccgaacctgggtgatctatccatgacca 132065 Score = 252 bits (127), Expect = 3e-64 Identities = 148/155 (95%), Gaps = 5/155 (3%) Strand = Plus / Plus Query: 33 ctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaag 92 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 104664 ctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaag 104723 Query: 93 ggaacggaacccaccggagccgtagcgaaagcgagtcttaatagggcgattgtcactgct 152 ||||| ||||||||||||||||||||||||||||| ||||||| |||||||||||| Sbjct: 104724 ggaac-----ccaccggagccgtagcgaaagcgagtcttcatagggcaattgtcactgct 104778 Query: 153 tatggacccgaacctgggtgatctatccatgacca 187 ||||||||||||||||||||||||||||||||||| Sbjct: 104779 tatggacccgaacctgggtgatctatccatgacca 104813
>emb|Z00044.2|CHNTXX Nicotiana tabacum chloroplast genome DNA Length = 155943 Score = 252 bits (127), Expect = 3e-64 Identities = 148/155 (95%), Gaps = 5/155 (3%) Strand = Plus / Minus Query: 33 ctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaag 92 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 135739 ctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaag 135680 Query: 93 ggaacggaacccaccggagccgtagcgaaagcgagtcttaatagggcgattgtcactgct 152 ||||| ||||||||||||||||||||||||||||| ||||||| |||||||||||| Sbjct: 135679 ggaac-----ccaccggagccgtagcgaaagcgagtcttcatagggcaattgtcactgct 135625 Query: 153 tatggacccgaacctgggtgatctatccatgacca 187 ||||||||||||||||||||||||||||||||||| Sbjct: 135624 tatggacccgaacctgggtgatctatccatgacca 135590 Score = 252 bits (127), Expect = 3e-64 Identities = 148/155 (95%), Gaps = 5/155 (3%) Strand = Plus / Plus Query: 33 ctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaag 92 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 106891 ctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaag 106950 Query: 93 ggaacggaacccaccggagccgtagcgaaagcgagtcttaatagggcgattgtcactgct 152 ||||| ||||||||||||||||||||||||||||| ||||||| |||||||||||| Sbjct: 106951 ggaac-----ccaccggagccgtagcgaaagcgagtcttcatagggcaattgtcactgct 107005 Query: 153 tatggacccgaacctgggtgatctatccatgacca 187 ||||||||||||||||||||||||||||||||||| Sbjct: 107006 tatggacccgaacctgggtgatctatccatgacca 107040
>gb|DQ383815.1| Helianthus annuus cultivar line HA383 chloroplast, complete genome Length = 151104 Score = 252 bits (127), Expect = 3e-64 Identities = 148/155 (95%), Gaps = 5/155 (3%) Strand = Plus / Minus Query: 33 ctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaag 92 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 131106 ctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaag 131047 Query: 93 ggaacggaacccaccggagccgtagcgaaagcgagtcttaatagggcgattgtcactgct 152 ||||| ||||||||||||||||||||||||||||| ||||||| |||||||||||| Sbjct: 131046 ggaac-----ccaccggagccgtagcgaaagcgagtcttcatagggcaattgtcactgct 130992 Query: 153 tatggacccgaacctgggtgatctatccatgacca 187 ||||||||||||||||||||||||||||||||||| Sbjct: 130991 tatggacccgaacctgggtgatctatccatgacca 130957 Score = 252 bits (127), Expect = 3e-64 Identities = 148/155 (95%), Gaps = 5/155 (3%) Strand = Plus / Plus Query: 33 ctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaag 92 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 103529 ctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaag 103588 Query: 93 ggaacggaacccaccggagccgtagcgaaagcgagtcttaatagggcgattgtcactgct 152 ||||| ||||||||||||||||||||||||||||| ||||||| |||||||||||| Sbjct: 103589 ggaac-----ccaccggagccgtagcgaaagcgagtcttcatagggcaattgtcactgct 103643 Query: 153 tatggacccgaacctgggtgatctatccatgacca 187 ||||||||||||||||||||||||||||||||||| Sbjct: 103644 tatggacccgaacctgggtgatctatccatgacca 103678
>gb|DQ424856.1| Vitis vinifera cultivar Maxxa chloroplast, complete genome Length = 160928 Score = 252 bits (127), Expect = 3e-64 Identities = 148/155 (95%), Gaps = 5/155 (3%) Strand = Plus / Minus Query: 33 ctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaag 92 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 139799 ctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaag 139740 Query: 93 ggaacggaacccaccggagccgtagcgaaagcgagtcttaatagggcgattgtcactgct 152 ||||| ||||||||||||||||||||||||||||| ||||||| |||||||||||| Sbjct: 139739 ggaac-----ccaccggagccgtagcgaaagcgagtcttcatagggcaattgtcactgct 139685 Query: 153 tatggacccgaacctgggtgatctatccatgacca 187 ||||||||||||||||||||||||||||||||||| Sbjct: 139684 tatggacccgaacctgggtgatctatccatgacca 139650 Score = 252 bits (127), Expect = 3e-64 Identities = 148/155 (95%), Gaps = 5/155 (3%) Strand = Plus / Plus Query: 33 ctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaag 92 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 110261 ctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaag 110320 Query: 93 ggaacggaacccaccggagccgtagcgaaagcgagtcttaatagggcgattgtcactgct 152 ||||| ||||||||||||||||||||||||||||| ||||||| |||||||||||| Sbjct: 110321 ggaac-----ccaccggagccgtagcgaaagcgagtcttcatagggcaattgtcactgct 110375 Query: 153 tatggacccgaacctgggtgatctatccatgacca 187 ||||||||||||||||||||||||||||||||||| Sbjct: 110376 tatggacccgaacctgggtgatctatccatgacca 110410
>emb|AJ316582.1|ABE316582 Atropa belladonna complete chloroplast genome, strain Ab5p(kan) Length = 156687 Score = 252 bits (127), Expect = 3e-64 Identities = 148/155 (95%), Gaps = 5/155 (3%) Strand = Plus / Minus Query: 33 ctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaag 92 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 136377 ctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaag 136318 Query: 93 ggaacggaacccaccggagccgtagcgaaagcgagtcttaatagggcgattgtcactgct 152 ||||| ||||||||||||||||||||||||||||| ||||||| |||||||||||| Sbjct: 136317 ggaac-----ccaccggagccgtagcgaaagcgagtcttcatagggcaattgtcactgct 136263 Query: 153 tatggacccgaacctgggtgatctatccatgacca 187 ||||||||||||||||||||||||||||||||||| Sbjct: 136262 tatggacccgaacctgggtgatctatccatgacca 136228 Score = 252 bits (127), Expect = 3e-64 Identities = 148/155 (95%), Gaps = 5/155 (3%) Strand = Plus / Plus Query: 33 ctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaag 92 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 107180 ctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaag 107239 Query: 93 ggaacggaacccaccggagccgtagcgaaagcgagtcttaatagggcgattgtcactgct 152 ||||| ||||||||||||||||||||||||||||| ||||||| |||||||||||| Sbjct: 107240 ggaac-----ccaccggagccgtagcgaaagcgagtcttcatagggcaattgtcactgct 107294 Query: 153 tatggacccgaacctgggtgatctatccatgacca 187 ||||||||||||||||||||||||||||||||||| Sbjct: 107295 tatggacccgaacctgggtgatctatccatgacca 107329
>emb|AJ271079.2|OEL271079 Oenothera elata subsp. hookeri chloroplast plastome I, complete sequence Length = 163935 Score = 252 bits (127), Expect = 3e-64 Identities = 148/155 (95%), Gaps = 5/155 (3%) Strand = Plus / Minus Query: 33 ctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaag 92 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 142318 ctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaag 142259 Query: 93 ggaacggaacccaccggagccgtagcgaaagcgagtcttaatagggcgattgtcactgct 152 ||||| ||||||||||||||||||||||||||||| ||||||| |||||||||||| Sbjct: 142258 ggaac-----ccaccggagccgtagcgaaagcgagtcttcatagggcaattgtcactgct 142204 Query: 153 tatggacccgaacctgggtgatctatccatgacca 187 ||||||||||||||||||||||||||||||||||| Sbjct: 142203 tatggacccgaacctgggtgatctatccatgacca 142169 Score = 252 bits (127), Expect = 3e-64 Identities = 148/155 (95%), Gaps = 5/155 (3%) Strand = Plus / Plus Query: 33 ctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaag 92 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 111010 ctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaag 111069 Query: 93 ggaacggaacccaccggagccgtagcgaaagcgagtcttaatagggcgattgtcactgct 152 ||||| ||||||||||||||||||||||||||||| ||||||| |||||||||||| Sbjct: 111070 ggaac-----ccaccggagccgtagcgaaagcgagtcttcatagggcaattgtcactgct 111124 Query: 153 tatggacccgaacctgggtgatctatccatgacca 187 ||||||||||||||||||||||||||||||||||| Sbjct: 111125 tatggacccgaacctgggtgatctatccatgacca 111159
>gb|AY123764.1| Nicotiana tabacum chloroplast 16S ribosomal RNA-23S ribosomal RNA intergenic spacer region and 23S ribosomal RNA gene, partial sequences Length = 3735 Score = 252 bits (127), Expect = 3e-64 Identities = 148/155 (95%), Gaps = 5/155 (3%) Strand = Plus / Plus Query: 33 ctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaag 92 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2085 ctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaag 2144 Query: 93 ggaacggaacccaccggagccgtagcgaaagcgagtcttaatagggcgattgtcactgct 152 ||||| ||||||||||||||||||||||||||||| ||||||| |||||||||||| Sbjct: 2145 ggaac-----ccaccggagccgtagcgaaagcgagtcttcatagggcaattgtcactgct 2199 Query: 153 tatggacccgaacctgggtgatctatccatgacca 187 ||||||||||||||||||||||||||||||||||| Sbjct: 2200 tatggacccgaacctgggtgatctatccatgacca 2234
>gb|DQ386163.1| Solanum tuberosum cultivar Desiree chloroplast, complete genome Length = 155298 Score = 252 bits (127), Expect = 3e-64 Identities = 148/155 (95%), Gaps = 5/155 (3%) Strand = Plus / Minus Query: 33 ctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaag 92 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 134985 ctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaag 134926 Query: 93 ggaacggaacccaccggagccgtagcgaaagcgagtcttaatagggcgattgtcactgct 152 ||||| ||||||||||||||||||||||||||||| ||||||| |||||||||||| Sbjct: 134925 ggaac-----ccaccggagccgtagcgaaagcgagtcttcatagggcaattgtcactgct 134871 Query: 153 tatggacccgaacctgggtgatctatccatgacca 187 ||||||||||||||||||||||||||||||||||| Sbjct: 134870 tatggacccgaacctgggtgatctatccatgacca 134836 Score = 252 bits (127), Expect = 3e-64 Identities = 148/155 (95%), Gaps = 5/155 (3%) Strand = Plus / Plus Query: 33 ctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaag 92 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 106051 ctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaag 106110 Query: 93 ggaacggaacccaccggagccgtagcgaaagcgagtcttaatagggcgattgtcactgct 152 ||||| ||||||||||||||||||||||||||||| ||||||| |||||||||||| Sbjct: 106111 ggaac-----ccaccggagccgtagcgaaagcgagtcttcatagggcaattgtcactgct 106165 Query: 153 tatggacccgaacctgggtgatctatccatgacca 187 ||||||||||||||||||||||||||||||||||| Sbjct: 106166 tatggacccgaacctgggtgatctatccatgacca 106200
>gb|AY029747.1| Populus deltoides 23S ribosomal RNA, 4.5S ribosomal RNA, and 5S ribosomal RNA genes, complete sequence; chloroplast genes for chloroplast products Length = 5157 Score = 252 bits (127), Expect = 3e-64 Identities = 148/155 (95%), Gaps = 5/155 (3%) Strand = Plus / Plus Query: 33 ctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaag 92 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2329 ctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaag 2388 Query: 93 ggaacggaacccaccggagccgtagcgaaagcgagtcttaatagggcgattgtcactgct 152 ||||| ||||||||||||||||||||||||||||| ||||||| |||||||||||| Sbjct: 2389 ggaac-----ccaccggagccgtagcgaaagcgagtcttcatagggcaattgtcactgct 2443 Query: 153 tatggacccgaacctgggtgatctatccatgacca 187 ||||||||||||||||||||||||||||||||||| Sbjct: 2444 tatggacccgaacctgggtgatctatccatgacca 2478
>dbj|AB189069.1| Silene latifolia chloroplast DNA, partial sequence, rpoB gene to rps7 gene region Length = 47249 Score = 252 bits (127), Expect = 3e-64 Identities = 148/155 (95%), Gaps = 5/155 (3%) Strand = Plus / Plus Query: 33 ctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaag 92 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 46818 ctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaag 46877 Query: 93 ggaacggaacccaccggagccgtagcgaaagcgagtcttaatagggcgattgtcactgct 152 ||||| ||||||||||||||||||||||||||||| ||||||| |||||||||||| Sbjct: 46878 ggaac-----ccaccggagccgtagcgaaagcgagtcttcatagggcaattgtcactgct 46932 Query: 153 tatggacccgaacctgggtgatctatccatgacca 187 ||||||||||||||||||||||||||||||||||| Sbjct: 46933 tatggacccgaacctgggtgatctatccatgacca 46967
>gb|AF263517.1|AF263517 Vitis vinifera 23S ribosomal RNA gene, complete sequence; chloroplast gene for chloroplast product Length = 433 Score = 252 bits (127), Expect = 3e-64 Identities = 148/155 (95%), Gaps = 5/155 (3%) Strand = Plus / Plus Query: 33 ctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaag 92 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 90 ctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaag 149 Query: 93 ggaacggaacccaccggagccgtagcgaaagcgagtcttaatagggcgattgtcactgct 152 ||||| ||||||||||||||||||||||||||||| ||||||| |||||||||||| Sbjct: 150 ggaac-----ccaccggagccgtagcgaaagcgagtcttcatagggcaattgtcactgct 204 Query: 153 tatggacccgaacctgggtgatctatccatgacca 187 ||||||||||||||||||||||||||||||||||| Sbjct: 205 tatggacccgaacctgggtgatctatccatgacca 239
>gb|AF254866.1|AF254866 Amaranthus tricolor 23S ribosomal RNA, complete sequence; chloroplast gene for chloroplast product Length = 3322 Score = 252 bits (127), Expect = 3e-64 Identities = 148/155 (95%), Gaps = 5/155 (3%) Strand = Plus / Plus Query: 33 ctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaag 92 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1056 ctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaag 1115 Query: 93 ggaacggaacccaccggagccgtagcgaaagcgagtcttaatagggcgattgtcactgct 152 ||||| ||||||||||||||||||||||||||||| ||||||| |||||||||||| Sbjct: 1116 ggaac-----ccaccggagccgtagcgaaagcgagtcttcatagggcaattgtcactgct 1170 Query: 153 tatggacccgaacctgggtgatctatccatgacca 187 ||||||||||||||||||||||||||||||||||| Sbjct: 1171 tatggacccgaacctgggtgatctatccatgacca 1205
>gb|AF143267.1| Vitis vinifera 23S ribosomal RNA gene, partial sequence; chloroplast gene for chloroplast product Length = 425 Score = 252 bits (127), Expect = 3e-64 Identities = 148/155 (95%), Gaps = 5/155 (3%) Strand = Plus / Plus Query: 33 ctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaag 92 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 86 ctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaag 145 Query: 93 ggaacggaacccaccggagccgtagcgaaagcgagtcttaatagggcgattgtcactgct 152 ||||| ||||||||||||||||||||||||||||| ||||||| |||||||||||| Sbjct: 146 ggaac-----ccaccggagccgtagcgaaagcgagtcttcatagggcaattgtcactgct 200 Query: 153 tatggacccgaacctgggtgatctatccatgacca 187 ||||||||||||||||||||||||||||||||||| Sbjct: 201 tatggacccgaacctgggtgatctatccatgacca 235
>gb|AY582139.1| Panax ginseng chloroplast, complete genome Length = 156318 Score = 252 bits (127), Expect = 3e-64 Identities = 148/155 (95%), Gaps = 5/155 (3%) Strand = Plus / Minus Query: 33 ctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaag 92 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 136031 ctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaag 135972 Query: 93 ggaacggaacccaccggagccgtagcgaaagcgagtcttaatagggcgattgtcactgct 152 ||||| ||||||||||||||||||||||||||||| ||||||| |||||||||||| Sbjct: 135971 ggaac-----ccaccggagccgtagcgaaagcgagtcttcatagggcaattgtcactgct 135917 Query: 153 tatggacccgaacctgggtgatctatccatgacca 187 ||||||||||||||||||||||||||||||||||| Sbjct: 135916 tatggacccgaacctgggtgatctatccatgacca 135882 Score = 252 bits (127), Expect = 3e-64 Identities = 148/155 (95%), Gaps = 5/155 (3%) Strand = Plus / Plus Query: 33 ctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaag 92 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 106394 ctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaag 106453 Query: 93 ggaacggaacccaccggagccgtagcgaaagcgagtcttaatagggcgattgtcactgct 152 ||||| ||||||||||||||||||||||||||||| ||||||| |||||||||||| Sbjct: 106454 ggaac-----ccaccggagccgtagcgaaagcgagtcttcatagggcaattgtcactgct 106508 Query: 153 tatggacccgaacctgggtgatctatccatgacca 187 ||||||||||||||||||||||||||||||||||| Sbjct: 106509 tatggacccgaacctgggtgatctatccatgacca 106543
>emb|AM087200.2| Lycopersicon esculentum complete chloroplast genome Length = 155460 Score = 252 bits (127), Expect = 3e-64 Identities = 148/155 (95%), Gaps = 5/155 (3%) Strand = Plus / Minus Query: 33 ctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaag 92 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 135120 ctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaag 135061 Query: 93 ggaacggaacccaccggagccgtagcgaaagcgagtcttaatagggcgattgtcactgct 152 ||||| ||||||||||||||||||||||||||||| ||||||| |||||||||||| Sbjct: 135060 ggaac-----ccaccggagccgtagcgaaagcgagtcttcatagggcaattgtcactgct 135006 Query: 153 tatggacccgaacctgggtgatctatccatgacca 187 ||||||||||||||||||||||||||||||||||| Sbjct: 135005 tatggacccgaacctgggtgatctatccatgacca 134971 Score = 252 bits (127), Expect = 3e-64 Identities = 148/155 (95%), Gaps = 5/155 (3%) Strand = Plus / Plus Query: 33 ctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaag 92 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 106223 ctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaag 106282 Query: 93 ggaacggaacccaccggagccgtagcgaaagcgagtcttaatagggcgattgtcactgct 152 ||||| ||||||||||||||||||||||||||||| ||||||| |||||||||||| Sbjct: 106283 ggaac-----ccaccggagccgtagcgaaagcgagtcttcatagggcaattgtcactgct 106337 Query: 153 tatggacccgaacctgggtgatctatccatgacca 187 ||||||||||||||||||||||||||||||||||| Sbjct: 106338 tatggacccgaacctgggtgatctatccatgacca 106372
>gb|DQ347959.1| Lycopersicon esculentum cultivar LA3023 chloroplast, complete genome Length = 155461 Score = 252 bits (127), Expect = 3e-64 Identities = 148/155 (95%), Gaps = 5/155 (3%) Strand = Plus / Minus Query: 33 ctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaag 92 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 135118 ctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaag 135059 Query: 93 ggaacggaacccaccggagccgtagcgaaagcgagtcttaatagggcgattgtcactgct 152 ||||| ||||||||||||||||||||||||||||| ||||||| |||||||||||| Sbjct: 135058 ggaac-----ccaccggagccgtagcgaaagcgagtcttcatagggcaattgtcactgct 135004 Query: 153 tatggacccgaacctgggtgatctatccatgacca 187 ||||||||||||||||||||||||||||||||||| Sbjct: 135003 tatggacccgaacctgggtgatctatccatgacca 134969 Score = 252 bits (127), Expect = 3e-64 Identities = 148/155 (95%), Gaps = 5/155 (3%) Strand = Plus / Plus Query: 33 ctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaag 92 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 106220 ctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaag 106279 Query: 93 ggaacggaacccaccggagccgtagcgaaagcgagtcttaatagggcgattgtcactgct 152 ||||| ||||||||||||||||||||||||||||| ||||||| |||||||||||| Sbjct: 106280 ggaac-----ccaccggagccgtagcgaaagcgagtcttcatagggcaattgtcactgct 106334 Query: 153 tatggacccgaacctgggtgatctatccatgacca 187 ||||||||||||||||||||||||||||||||||| Sbjct: 106335 tatggacccgaacctgggtgatctatccatgacca 106369
>gb|DQ347958.1| Solanum bulbocastanum cultivar PT29 chloroplast, complete genome Length = 155371 Score = 252 bits (127), Expect = 3e-64 Identities = 148/155 (95%), Gaps = 5/155 (3%) Strand = Plus / Minus Query: 33 ctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaag 92 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 135030 ctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaag 134971 Query: 93 ggaacggaacccaccggagccgtagcgaaagcgagtcttaatagggcgattgtcactgct 152 ||||| ||||||||||||||||||||||||||||| ||||||| |||||||||||| Sbjct: 134970 ggaac-----ccaccggagccgtagcgaaagcgagtcttcatagggcaattgtcactgct 134916 Query: 153 tatggacccgaacctgggtgatctatccatgacca 187 ||||||||||||||||||||||||||||||||||| Sbjct: 134915 tatggacccgaacctgggtgatctatccatgacca 134881 Score = 252 bits (127), Expect = 3e-64 Identities = 148/155 (95%), Gaps = 5/155 (3%) Strand = Plus / Plus Query: 33 ctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaag 92 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 106098 ctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaag 106157 Query: 93 ggaacggaacccaccggagccgtagcgaaagcgagtcttaatagggcgattgtcactgct 152 ||||| ||||||||||||||||||||||||||||| ||||||| |||||||||||| Sbjct: 106158 ggaac-----ccaccggagccgtagcgaaagcgagtcttcatagggcaattgtcactgct 106212 Query: 153 tatggacccgaacctgggtgatctatccatgacca 187 ||||||||||||||||||||||||||||||||||| Sbjct: 106213 tatggacccgaacctgggtgatctatccatgacca 106247
>dbj|AB237912.1| Nicotiana sylvestris chloroplast DNA, complete sequence Length = 155941 Score = 252 bits (127), Expect = 3e-64 Identities = 148/155 (95%), Gaps = 5/155 (3%) Strand = Plus / Minus Query: 33 ctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaag 92 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 135737 ctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaag 135678 Query: 93 ggaacggaacccaccggagccgtagcgaaagcgagtcttaatagggcgattgtcactgct 152 ||||| ||||||||||||||||||||||||||||| ||||||| |||||||||||| Sbjct: 135677 ggaac-----ccaccggagccgtagcgaaagcgagtcttcatagggcaattgtcactgct 135623 Query: 153 tatggacccgaacctgggtgatctatccatgacca 187 ||||||||||||||||||||||||||||||||||| Sbjct: 135622 tatggacccgaacctgggtgatctatccatgacca 135588 Score = 252 bits (127), Expect = 3e-64 Identities = 148/155 (95%), Gaps = 5/155 (3%) Strand = Plus / Plus Query: 33 ctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaag 92 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 106889 ctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaag 106948 Query: 93 ggaacggaacccaccggagccgtagcgaaagcgagtcttaatagggcgattgtcactgct 152 ||||| ||||||||||||||||||||||||||||| ||||||| |||||||||||| Sbjct: 106949 ggaac-----ccaccggagccgtagcgaaagcgagtcttcatagggcaattgtcactgct 107003 Query: 153 tatggacccgaacctgggtgatctatccatgacca 187 ||||||||||||||||||||||||||||||||||| Sbjct: 107004 tatggacccgaacctgggtgatctatccatgacca 107038
>dbj|AP007232.1| Lactuca sativa chloroplast DNA, complete genome Length = 152765 Score = 252 bits (127), Expect = 3e-64 Identities = 148/155 (95%), Gaps = 5/155 (3%) Strand = Plus / Minus Query: 33 ctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaag 92 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 132207 ctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaag 132148 Query: 93 ggaacggaacccaccggagccgtagcgaaagcgagtcttaatagggcgattgtcactgct 152 ||||| ||||||||||||||||||||||||||||| ||||||| |||||||||||| Sbjct: 132147 ggaac-----ccaccggagccgtagcgaaagcgagtcttcatagggcaattgtcactgct 132093 Query: 153 tatggacccgaacctgggtgatctatccatgacca 187 ||||||||||||||||||||||||||||||||||| Sbjct: 132092 tatggacccgaacctgggtgatctatccatgacca 132058 Score = 252 bits (127), Expect = 3e-64 Identities = 148/155 (95%), Gaps = 5/155 (3%) Strand = Plus / Plus Query: 33 ctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaag 92 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 104662 ctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaag 104721 Query: 93 ggaacggaacccaccggagccgtagcgaaagcgagtcttaatagggcgattgtcactgct 152 ||||| ||||||||||||||||||||||||||||| ||||||| |||||||||||| Sbjct: 104722 ggaac-----ccaccggagccgtagcgaaagcgagtcttcatagggcaattgtcactgct 104776 Query: 153 tatggacccgaacctgggtgatctatccatgacca 187 ||||||||||||||||||||||||||||||||||| Sbjct: 104777 tatggacccgaacctgggtgatctatccatgacca 104811
>dbj|AB240139.1| Nicotiana tomentosiformis chloroplast DNA, complete sequence Length = 155745 Score = 252 bits (127), Expect = 3e-64 Identities = 148/155 (95%), Gaps = 5/155 (3%) Strand = Plus / Minus Query: 33 ctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaag 92 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 135468 ctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaag 135409 Query: 93 ggaacggaacccaccggagccgtagcgaaagcgagtcttaatagggcgattgtcactgct 152 ||||| ||||||||||||||||||||||||||||| ||||||| |||||||||||| Sbjct: 135408 ggaac-----ccaccggagccgtagcgaaagcgagtcttcatagggcaattgtcactgct 135354 Query: 153 tatggacccgaacctgggtgatctatccatgacca 187 ||||||||||||||||||||||||||||||||||| Sbjct: 135353 tatggacccgaacctgggtgatctatccatgacca 135319 Score = 252 bits (127), Expect = 3e-64 Identities = 148/155 (95%), Gaps = 5/155 (3%) Strand = Plus / Plus Query: 33 ctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaag 92 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 106670 ctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaag 106729 Query: 93 ggaacggaacccaccggagccgtagcgaaagcgagtcttaatagggcgattgtcactgct 152 ||||| ||||||||||||||||||||||||||||| ||||||| |||||||||||| Sbjct: 106730 ggaac-----ccaccggagccgtagcgaaagcgagtcttcatagggcaattgtcactgct 106784 Query: 153 tatggacccgaacctgggtgatctatccatgacca 187 ||||||||||||||||||||||||||||||||||| Sbjct: 106785 tatggacccgaacctgggtgatctatccatgacca 106819
>dbj|BA000042.1| Nicotiana tabacum mitochondrial DNA, complete genome Length = 430597 Score = 252 bits (127), Expect = 3e-64 Identities = 148/155 (95%), Gaps = 5/155 (3%) Strand = Plus / Plus Query: 33 ctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaag 92 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 177405 ctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaag 177464 Query: 93 ggaacggaacccaccggagccgtagcgaaagcgagtcttaatagggcgattgtcactgct 152 ||||| ||||||||||||||||||||||||||||| ||||||| |||||||||||| Sbjct: 177465 ggaac-----ccaccggagccgtagcgaaagcgagtcttcatagggcaattgtcactgct 177519 Query: 153 tatggacccgaacctgggtgatctatccatgacca 187 ||||||||||||||||||||||||||||||||||| Sbjct: 177520 tatggacccgaacctgggtgatctatccatgacca 177554
>gb|AY780259.1| Eucalyptus globulus subsp. globulus chloroplast, complete genome Length = 160286 Score = 252 bits (127), Expect = 3e-64 Identities = 148/155 (95%), Gaps = 5/155 (3%) Strand = Plus / Minus Query: 33 ctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaag 92 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 139148 ctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaag 139089 Query: 93 ggaacggaacccaccggagccgtagcgaaagcgagtcttaatagggcgattgtcactgct 152 ||||| ||||||||||||||||||||||||||||| ||||||| |||||||||||| Sbjct: 139088 ggaac-----ccaccggagccgtagcgaaagcgagtcttcatagggcaattgtcactgct 139034 Query: 153 tatggacccgaacctgggtgatctatccatgacca 187 ||||||||||||||||||||||||||||||||||| Sbjct: 139033 tatggacccgaacctgggtgatctatccatgacca 138999 Score = 252 bits (127), Expect = 3e-64 Identities = 148/155 (95%), Gaps = 5/155 (3%) Strand = Plus / Plus Query: 33 ctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaag 92 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 110151 ctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaag 110210 Query: 93 ggaacggaacccaccggagccgtagcgaaagcgagtcttaatagggcgattgtcactgct 152 ||||| ||||||||||||||||||||||||||||| ||||||| |||||||||||| Sbjct: 110211 ggaac-----ccaccggagccgtagcgaaagcgagtcttcatagggcaattgtcactgct 110265 Query: 153 tatggacccgaacctgggtgatctatccatgacca 187 ||||||||||||||||||||||||||||||||||| Sbjct: 110266 tatggacccgaacctgggtgatctatccatgacca 110300
>gb|J01446.1|TOBCPRG23 Tobacco chloroplast 23S and 4.5S rRNA genes Length = 3166 Score = 252 bits (127), Expect = 3e-64 Identities = 148/155 (95%), Gaps = 5/155 (3%) Strand = Plus / Plus Query: 33 ctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaag 92 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 658 ctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaag 717 Query: 93 ggaacggaacccaccggagccgtagcgaaagcgagtcttaatagggcgattgtcactgct 152 ||||| ||||||||||||||||||||||||||||| ||||||| |||||||||||| Sbjct: 718 ggaac-----ccaccggagccgtagcgaaagcgagtcttcatagggcaattgtcactgct 772 Query: 153 tatggacccgaacctgggtgatctatccatgacca 187 ||||||||||||||||||||||||||||||||||| Sbjct: 773 tatggacccgaacctgggtgatctatccatgacca 807
>gb|M75722.1|ALSCP23SA Alnus incana chloroplast 23S ribosomal RNA (23S rRNA) gene Length = 2811 Score = 252 bits (127), Expect = 3e-64 Identities = 148/155 (95%), Gaps = 5/155 (3%) Strand = Plus / Plus Query: 33 ctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaag 92 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 562 ctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaag 621 Query: 93 ggaacggaacccaccggagccgtagcgaaagcgagtcttaatagggcgattgtcactgct 152 ||||| ||||||||||||||||||||||||||||| ||||||| |||||||||||| Sbjct: 622 ggaac-----ccaccggagccgtagcgaaagcgagtcttcatagggcaattgtcactgct 676 Query: 153 tatggacccgaacctgggtgatctatccatgacca 187 ||||||||||||||||||||||||||||||||||| Sbjct: 677 tatggacccgaacctgggtgatctatccatgacca 711
>dbj|AB061306.1| Citrus jambhiri mitochondrial ACRS gene for ACR toxin-sensitivity inducing protein, complete cds Length = 2303 Score = 252 bits (127), Expect = 3e-64 Identities = 148/155 (95%), Gaps = 5/155 (3%) Strand = Plus / Minus Query: 33 ctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaag 92 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 183 ctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaag 124 Query: 93 ggaacggaacccaccggagccgtagcgaaagcgagtcttaatagggcgattgtcactgct 152 ||||| ||||||||||||||||||||||||||||| ||||||| |||||||||||| Sbjct: 123 ggaac-----ccaccggagccgtagcgaaagcgagtcttcatagggcaattgtcactgct 69 Query: 153 tatggacccgaacctgggtgatctatccatgacca 187 ||||||||||||||||||||||||||||||||||| Sbjct: 68 tatggacccgaacctgggtgatctatccatgacca 34
>emb|AJ400848.1|SOL400848 Spinacia oleracea complete chloroplast genome Length = 150725 Score = 248 bits (125), Expect = 5e-63 Identities = 146/153 (95%), Gaps = 5/153 (3%) Strand = Plus / Minus Query: 35 ctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaaggg 94 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 131228 ctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaaggg 131169 Query: 95 aacggaacccaccggagccgtagcgaaagcgagtcttaatagggcgattgtcactgctta 154 ||| ||||||||||||||||||||||||||||| ||||||| |||||||||||||| Sbjct: 131168 aac-----ccaccggagccgtagcgaaagcgagtcttcatagggcaattgtcactgctta 131114 Query: 155 tggacccgaacctgggtgatctatccatgacca 187 ||||||||||||||||||||||||||||||||| Sbjct: 131113 tggacccgaacctgggtgatctatccatgacca 131081 Score = 248 bits (125), Expect = 5e-63 Identities = 146/153 (95%), Gaps = 5/153 (3%) Strand = Plus / Plus Query: 35 ctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaaggg 94 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 102217 ctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaaggg 102276 Query: 95 aacggaacccaccggagccgtagcgaaagcgagtcttaatagggcgattgtcactgctta 154 ||| ||||||||||||||||||||||||||||| ||||||| |||||||||||||| Sbjct: 102277 aac-----ccaccggagccgtagcgaaagcgagtcttcatagggcaattgtcactgctta 102331 Query: 155 tggacccgaacctgggtgatctatccatgacca 187 ||||||||||||||||||||||||||||||||| Sbjct: 102332 tggacccgaacctgggtgatctatccatgacca 102364
>gb|AC151668.38| Medicago truncatula clone mth2-6e22, complete sequence Length = 110949 Score = 244 bits (123), Expect = 8e-62 Identities = 147/155 (94%), Gaps = 5/155 (3%) Strand = Plus / Plus Query: 33 ctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaag 92 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4791 ctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaag 4850 Query: 93 ggaacggaacccaccggagccgtagcgaaagcgagtcttaatagggcgattgtcactgct 152 |||| ||||||||||||||||||||||||||||| ||||||| |||||||||||| Sbjct: 4851 ggaaa-----ccaccggagccgtagcgaaagcgagtcttcatagggctattgtcactgct 4905 Query: 153 tatggacccgaacctgggtgatctatccatgacca 187 ||||||||||||||||||||||||||||||||||| Sbjct: 4906 tatggacccgaacctgggtgatctatccatgacca 4940
>emb|AJ970307.1| Cucumis sativus chloroplast complete genome Length = 155293 Score = 244 bits (123), Expect = 8e-62 Identities = 147/155 (94%), Gaps = 5/155 (3%) Strand = Plus / Minus Query: 33 ctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaag 92 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 135340 ctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaag 135281 Query: 93 ggaacggaacccaccggagccgtagcgaaagcgagtcttaatagggcgattgtcactgct 152 ||||| ||||||||||||||||||||||||||||| || |||| |||||||||||| Sbjct: 135280 ggaac-----ccaccggagccgtagcgaaagcgagtcttcatggggcaattgtcactgct 135226 Query: 153 tatggacccgaacctgggtgatctatccatgacca 187 ||||||||||||||||||||||||||||||||||| Sbjct: 135225 tatggacccgaacctgggtgatctatccatgacca 135191 Score = 244 bits (123), Expect = 8e-62 Identities = 147/155 (94%), Gaps = 5/155 (3%) Strand = Plus / Plus Query: 33 ctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaag 92 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 106566 ctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaag 106625 Query: 93 ggaacggaacccaccggagccgtagcgaaagcgagtcttaatagggcgattgtcactgct 152 ||||| ||||||||||||||||||||||||||||| || |||| |||||||||||| Sbjct: 106626 ggaac-----ccaccggagccgtagcgaaagcgagtcttcatggggcaattgtcactgct 106680 Query: 153 tatggacccgaacctgggtgatctatccatgacca 187 ||||||||||||||||||||||||||||||||||| Sbjct: 106681 tatggacccgaacctgggtgatctatccatgacca 106715
>gb|AY096798.1| Arabidopsis thaliana At2g07707 mRNA sequence Length = 1750 Score = 244 bits (123), Expect = 8e-62 Identities = 147/155 (94%), Gaps = 5/155 (3%) Strand = Plus / Plus Query: 33 ctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaag 92 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 560 ctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaag 619 Query: 93 ggaacggaacccaccggagccgtagcgaaagcgagtcttaatagggcgattgtcactgct 152 ||||| ||||||||||||||||||||||||||||| ||||||| |||||||||||| Sbjct: 620 ggaac-----ccaccggagccgtagcgaaagcgagtcttcatagggcaattgtcactgct 674 Query: 153 tatggacccgaacctgggtgatctatccatgacca 187 ||||||||||||||||||||||||||| ||||||| Sbjct: 675 tatggacccgaacctgggtgatctatctatgacca 709
>gb|DQ231548.1| Brassica rapa subsp. pekinensis chloroplast sequence Length = 153482 Score = 244 bits (123), Expect = 8e-62 Identities = 147/155 (94%), Gaps = 5/155 (3%) Strand = Plus / Minus Query: 33 ctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaag 92 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 132437 ctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaag 132378 Query: 93 ggaacggaacccaccggagccgtagcgaaagcgagtcttaatagggcgattgtcactgct 152 ||||| ||||||||||||||||||||||||||||| ||||||| |||||||||||| Sbjct: 132377 ggaac-----ccaccggagccgtagcgaaagcgagtcttcatagggcaattgtcactgct 132323 Query: 153 tatggacccgaacctgggtgatctatccatgacca 187 ||||||||||||||||||||||||||| ||||||| Sbjct: 132322 tatggacccgaacctgggtgatctatctatgacca 132288 Score = 244 bits (123), Expect = 8e-62 Identities = 147/155 (94%), Gaps = 5/155 (3%) Strand = Plus / Plus Query: 33 ctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaag 92 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 104327 ctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaag 104386 Query: 93 ggaacggaacccaccggagccgtagcgaaagcgagtcttaatagggcgattgtcactgct 152 ||||| ||||||||||||||||||||||||||||| ||||||| |||||||||||| Sbjct: 104387 ggaac-----ccaccggagccgtagcgaaagcgagtcttcatagggcaattgtcactgct 104441 Query: 153 tatggacccgaacctgggtgatctatccatgacca 187 ||||||||||||||||||||||||||| ||||||| Sbjct: 104442 tatggacccgaacctgggtgatctatctatgacca 104476
>gb|AC093544.8| Medicago truncatula chloroplast, complete genome, complete sequence Length = 124033 Score = 244 bits (123), Expect = 8e-62 Identities = 147/155 (94%), Gaps = 5/155 (3%) Strand = Plus / Minus Query: 33 ctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaag 92 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 23134 ctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaag 23075 Query: 93 ggaacggaacccaccggagccgtagcgaaagcgagtcttaatagggcgattgtcactgct 152 |||| ||||||||||||||||||||||||||||| ||||||| |||||||||||| Sbjct: 23074 ggaaa-----ccaccggagccgtagcgaaagcgagtcttcatagggctattgtcactgct 23020 Query: 153 tatggacccgaacctgggtgatctatccatgacca 187 ||||||||||||||||||||||||||||||||||| Sbjct: 23019 tatggacccgaacctgggtgatctatccatgacca 22985
>gb|AF355762.1| Ceriops tagal 23S ribosomal RNA gene, complete sequence; chloroplast gene for chloroplast product Length = 2873 Score = 244 bits (123), Expect = 8e-62 Identities = 147/155 (94%), Gaps = 5/155 (3%) Strand = Plus / Plus Query: 33 ctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaag 92 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 569 ctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaag 628 Query: 93 ggaacggaacccaccggagccgtagcgaaagcgagtcttaatagggcgattgtcactgct 152 ||||| ||||||||||||||||||||||||||||| |||||| |||||||||||| Sbjct: 629 ggaac-----ccaccggagccgtagcgaaagcgagtcttcgtagggcaattgtcactgct 683 Query: 153 tatggacccgaacctgggtgatctatccatgacca 187 ||||||||||||||||||||||||||||||||||| Sbjct: 684 tatggacccgaacctgggtgatctatccatgacca 718
>gb|DQ119058.1| Cucumis sativus cultivar Baekmibaekdadagi plastid, complete genome Length = 155527 Score = 244 bits (123), Expect = 8e-62 Identities = 147/155 (94%), Gaps = 5/155 (3%) Strand = Plus / Minus Query: 33 ctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaag 92 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 135619 ctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaag 135560 Query: 93 ggaacggaacccaccggagccgtagcgaaagcgagtcttaatagggcgattgtcactgct 152 ||||| ||||||||||||||||||||||||||||| || |||| |||||||||||| Sbjct: 135559 ggaac-----ccaccggagccgtagcgaaagcgagtcttcatggggcaattgtcactgct 135505 Query: 153 tatggacccgaacctgggtgatctatccatgacca 187 ||||||||||||||||||||||||||||||||||| Sbjct: 135504 tatggacccgaacctgggtgatctatccatgacca 135470 Score = 244 bits (123), Expect = 8e-62 Identities = 147/155 (94%), Gaps = 5/155 (3%) Strand = Plus / Plus Query: 33 ctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaag 92 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 106788 ctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaag 106847 Query: 93 ggaacggaacccaccggagccgtagcgaaagcgagtcttaatagggcgattgtcactgct 152 ||||| ||||||||||||||||||||||||||||| || |||| |||||||||||| Sbjct: 106848 ggaac-----ccaccggagccgtagcgaaagcgagtcttcatggggcaattgtcactgct 106902 Query: 153 tatggacccgaacctgggtgatctatccatgacca 187 ||||||||||||||||||||||||||||||||||| Sbjct: 106903 tatggacccgaacctgggtgatctatccatgacca 106937
>dbj|AP000423.1| Arabidopsis thaliana chloroplast genomic DNA, complete sequence, strain:Columbia Length = 154478 Score = 244 bits (123), Expect = 8e-62 Identities = 147/155 (94%), Gaps = 5/155 (3%) Strand = Plus / Minus Query: 33 ctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaag 92 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 133398 ctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaag 133339 Query: 93 ggaacggaacccaccggagccgtagcgaaagcgagtcttaatagggcgattgtcactgct 152 ||||| ||||||||||||||||||||||||||||| ||||||| |||||||||||| Sbjct: 133338 ggaac-----ccaccggagccgtagcgaaagcgagtcttcatagggcaattgtcactgct 133284 Query: 153 tatggacccgaacctgggtgatctatccatgacca 187 ||||||||||||||||||||||||||| ||||||| Sbjct: 133283 tatggacccgaacctgggtgatctatctatgacca 133249 Score = 244 bits (123), Expect = 8e-62 Identities = 147/155 (94%), Gaps = 5/155 (3%) Strand = Plus / Plus Query: 33 ctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaag 92 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 105251 ctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaag 105310 Query: 93 ggaacggaacccaccggagccgtagcgaaagcgagtcttaatagggcgattgtcactgct 152 ||||| ||||||||||||||||||||||||||||| ||||||| |||||||||||| Sbjct: 105311 ggaac-----ccaccggagccgtagcgaaagcgagtcttcatagggcaattgtcactgct 105365 Query: 153 tatggacccgaacctgggtgatctatccatgacca 187 ||||||||||||||||||||||||||| ||||||| Sbjct: 105366 tatggacccgaacctgggtgatctatctatgacca 105400
>gb|DQ231562.1| Solanum tuberosum chloroplast, complete genome Length = 155312 Score = 244 bits (123), Expect = 8e-62 Identities = 147/155 (94%), Gaps = 5/155 (3%) Strand = Plus / Minus Query: 33 ctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaag 92 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct: 134997 ctctgaccgcgtgcctgttgaagaatgagccggcgactaataggcagtggcttggttaag 134938 Query: 93 ggaacggaacccaccggagccgtagcgaaagcgagtcttaatagggcgattgtcactgct 152 ||||| ||||||||||||||||||||||||||||| ||||||| |||||||||||| Sbjct: 134937 ggaac-----ccaccggagccgtagcgaaagcgagtcttcatagggcaattgtcactgct 134883 Query: 153 tatggacccgaacctgggtgatctatccatgacca 187 ||||||||||||||||||||||||||||||||||| Sbjct: 134882 tatggacccgaacctgggtgatctatccatgacca 134848 Score = 244 bits (123), Expect = 8e-62 Identities = 147/155 (94%), Gaps = 5/155 (3%) Strand = Plus / Plus Query: 33 ctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaag 92 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct: 106065 ctctgaccgcgtgcctgttgaagaatgagccggcgactaataggcagtggcttggttaag 106124 Query: 93 ggaacggaacccaccggagccgtagcgaaagcgagtcttaatagggcgattgtcactgct 152 ||||| ||||||||||||||||||||||||||||| ||||||| |||||||||||| Sbjct: 106125 ggaac-----ccaccggagccgtagcgaaagcgagtcttcatagggcaattgtcactgct 106179 Query: 153 tatggacccgaacctgggtgatctatccatgacca 187 ||||||||||||||||||||||||||||||||||| Sbjct: 106180 tatggacccgaacctgggtgatctatccatgacca 106214
>emb|X55033.1|CHPSRRNAO P.sativum chloroplast DNA of the single ribosomal RNA operon Length = 7920 Score = 244 bits (123), Expect = 8e-62 Identities = 147/155 (94%), Gaps = 5/155 (3%) Strand = Plus / Plus Query: 33 ctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaag 92 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5059 ctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaag 5118 Query: 93 ggaacggaacccaccggagccgtagcgaaagcgagtcttaatagggcgattgtcactgct 152 |||| ||||||||||||||||||||||||||||| ||||||| |||||||||||| Sbjct: 5119 ggaaa-----ccaccggagccgtagcgaaagcgagtcttcatagggctattgtcactgct 5173 Query: 153 tatggacccgaacctgggtgatctatccatgacca 187 ||||||||||||||||||||||||||||||||||| Sbjct: 5174 tatggacccgaacctgggtgatctatccatgacca 5208
>gb|M37430.1|PEACPDKAA Pea Chloroplast 4.5S, 5S, 16S and 23S mRNA Length = 7920 Score = 244 bits (123), Expect = 8e-62 Identities = 147/155 (94%), Gaps = 5/155 (3%) Strand = Plus / Plus Query: 33 ctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaag 92 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5059 ctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaag 5118 Query: 93 ggaacggaacccaccggagccgtagcgaaagcgagtcttaatagggcgattgtcactgct 152 |||| ||||||||||||||||||||||||||||| ||||||| |||||||||||| Sbjct: 5119 ggaaa-----ccaccggagccgtagcgaaagcgagtcttcatagggctattgtcactgct 5173 Query: 153 tatggacccgaacctgggtgatctatccatgacca 187 ||||||||||||||||||||||||||||||||||| Sbjct: 5174 tatggacccgaacctgggtgatctatccatgacca 5208
>gb|AY228468.1| Pinus Koraiensis chloroplast, complete genome Length = 116866 Score = 240 bits (121), Expect = 1e-60 Identities = 169/185 (91%), Gaps = 5/185 (2%) Strand = Plus / Plus Query: 3 agctcccaaccagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgagc 62 ||||||||| |||||||||| || ||||||||||||||||||||||||||||||||| Sbjct: 86796 agctcccaagcagtgggaggaaaattagatctctgaccgcgtgcctgttgaagaatgagc 86855 Query: 63 cggcgactcataggcagtggcttggttaagggaacggaacccaccggagccgtagcgaaa 122 |||||||| |||||||||||||||||||||||||| |||||||||||||||||| | Sbjct: 86856 cggcgacttataggcagtggcttggttaagggaac-----ccaccggagccgtagcgaga 86910 Query: 123 gcgagtcttaatagggcgattgtcactgcttatggacccgaacctgggtgatctatccat 182 ||||||||| || |||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 86911 gcgagtcttcatggggcaattgtcactgcttatggacccgaacctgggtgatctatccat 86970 Query: 183 gacca 187 ||||| Sbjct: 86971 gacca 86975
>dbj|D17510.1|PINCPTRPG Pinus thunbergii chloroplast DNA, complete sequence Length = 119707 Score = 240 bits (121), Expect = 1e-60 Identities = 169/185 (91%), Gaps = 5/185 (2%) Strand = Plus / Plus Query: 3 agctcccaaccagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgagc 62 ||||||||| |||||||||| || ||||||||||||||||||||||||||||||||| Sbjct: 88882 agctcccaagcagtgggaggaaaattagatctctgaccgcgtgcctgttgaagaatgagc 88941 Query: 63 cggcgactcataggcagtggcttggttaagggaacggaacccaccggagccgtagcgaaa 122 |||||||| |||||||||||||||||||||||||| |||||||||||||||||| | Sbjct: 88942 cggcgacttataggcagtggcttggttaagggaac-----ccaccggagccgtagcgaga 88996 Query: 123 gcgagtcttaatagggcgattgtcactgcttatggacccgaacctgggtgatctatccat 182 ||||||||| || |||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 88997 gcgagtcttcatggggcaattgtcactgcttatggacccgaacctgggtgatctatccat 89056 Query: 183 gacca 187 ||||| Sbjct: 89057 gacca 89061
>gb|AY660566.1| Huperzia lucidula chloroplast, complete genome Length = 154373 Score = 238 bits (120), Expect = 5e-60 Identities = 168/184 (91%), Gaps = 5/184 (2%) Strand = Plus / Minus Query: 4 gctcccaaccagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgagcc 63 |||||||| |||||||||| ||| |||| ||||||||||||||||||||||||||||| Sbjct: 146025 gctcccaagcagtgggaggagaatcggatccctgaccgcgtgcctgttgaagaatgagcc 145966 Query: 64 ggcgactcataggcagtggcttggttaagggaacggaacccaccggagccgtagcgaaag 123 ||||||| |||||||||||| ||||||||||||| ||||||||||||||||||||| Sbjct: 145965 ggcgacttataggcagtggcctggttaagggaac-----ccaccggagccgtagcgaaag 145911 Query: 124 cgagtcttaatagggcgattgtcactgcttatggacccgaacctgggtgatctatccatg 183 |||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 145910 cgagtcttcctagggcaattgtcactgcttatggacccgaacctgggtgatctatccatg 145851 Query: 184 acca 187 |||| Sbjct: 145850 acca 145847 Score = 238 bits (120), Expect = 5e-60 Identities = 168/184 (91%), Gaps = 5/184 (2%) Strand = Plus / Plus Query: 4 gctcccaaccagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgagcc 63 |||||||| |||||||||| ||| |||| ||||||||||||||||||||||||||||| Sbjct: 112437 gctcccaagcagtgggaggagaatcggatccctgaccgcgtgcctgttgaagaatgagcc 112496 Query: 64 ggcgactcataggcagtggcttggttaagggaacggaacccaccggagccgtagcgaaag 123 ||||||| |||||||||||| ||||||||||||| ||||||||||||||||||||| Sbjct: 112497 ggcgacttataggcagtggcctggttaagggaac-----ccaccggagccgtagcgaaag 112551 Query: 124 cgagtcttaatagggcgattgtcactgcttatggacccgaacctgggtgatctatccatg 183 |||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 112552 cgagtcttcctagggcaattgtcactgcttatggacccgaacctgggtgatctatccatg 112611 Query: 184 acca 187 |||| Sbjct: 112612 acca 112615
>gb|DQ317523.1| Glycine max cultivar PI 437654 chloroplast, complete genome Length = 152218 Score = 236 bits (119), Expect = 2e-59 Identities = 146/155 (94%), Gaps = 5/155 (3%) Strand = Plus / Minus Query: 33 ctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaag 92 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 131306 ctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaag 131247 Query: 93 ggaacggaacccaccggagccgtagcgaaagcgagtcttaatagggcgattgtcactgct 152 |||| ||||||||||||||||||||||||||||| | ||||| |||||||||||| Sbjct: 131246 ggaaa-----ccaccggagccgtagcgaaagcgagtcttcacagggcaattgtcactgct 131192 Query: 153 tatggacccgaacctgggtgatctatccatgacca 187 ||||||||||||||||||||||||||||||||||| Sbjct: 131191 tatggacccgaacctgggtgatctatccatgacca 131157 Score = 236 bits (119), Expect = 2e-59 Identities = 146/155 (94%), Gaps = 5/155 (3%) Strand = Plus / Plus Query: 33 ctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaag 92 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 104088 ctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaag 104147 Query: 93 ggaacggaacccaccggagccgtagcgaaagcgagtcttaatagggcgattgtcactgct 152 |||| ||||||||||||||||||||||||||||| | ||||| |||||||||||| Sbjct: 104148 ggaaa-----ccaccggagccgtagcgaaagcgagtcttcacagggcaattgtcactgct 104202 Query: 153 tatggacccgaacctgggtgatctatccatgacca 187 ||||||||||||||||||||||||||||||||||| Sbjct: 104203 tatggacccgaacctgggtgatctatccatgacca 104237
>dbj|AP002983.1| Lotus japonicus chloroplast DNA, complete genome Length = 150519 Score = 236 bits (119), Expect = 2e-59 Identities = 146/155 (94%), Gaps = 5/155 (3%) Strand = Plus / Minus Query: 33 ctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaag 92 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 129969 ctctgaccgcgtgcctgttgaagaatgagccggcgactcataggtagtggcttggttaag 129910 Query: 93 ggaacggaacccaccggagccgtagcgaaagcgagtcttaatagggcgattgtcactgct 152 |||| ||||||||||||||||||||||||||||| ||||||| |||||||||||| Sbjct: 129909 ggaaa-----ccaccggagccgtagcgaaagcgagtcttcatagggcaattgtcactgct 129855 Query: 153 tatggacccgaacctgggtgatctatccatgacca 187 ||||||||||||||||||||||||||||||||||| Sbjct: 129854 tatggacccgaacctgggtgatctatccatgacca 129820 Score = 236 bits (119), Expect = 2e-59 Identities = 146/155 (94%), Gaps = 5/155 (3%) Strand = Plus / Plus Query: 33 ctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaag 92 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 102487 ctctgaccgcgtgcctgttgaagaatgagccggcgactcataggtagtggcttggttaag 102546 Query: 93 ggaacggaacccaccggagccgtagcgaaagcgagtcttaatagggcgattgtcactgct 152 |||| ||||||||||||||||||||||||||||| ||||||| |||||||||||| Sbjct: 102547 ggaaa-----ccaccggagccgtagcgaaagcgagtcttcatagggcaattgtcactgct 102601 Query: 153 tatggacccgaacctgggtgatctatccatgacca 187 ||||||||||||||||||||||||||||||||||| Sbjct: 102602 tatggacccgaacctgggtgatctatccatgacca 102636
>emb|X04465.1|CHMPXX Marchantia polymorpha chloroplast genome DNA Length = 121024 Score = 232 bits (117), Expect = 3e-58 Identities = 168/185 (90%), Gaps = 5/185 (2%) Strand = Plus / Minus Query: 3 agctcccaaccagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgagc 62 ||||||||| |||||||||| ||| |||||||||||||||||||||||||||||||| Sbjct: 115678 agctcccaagcagtgggaggagaattgaatctctgaccgcgtgcctgttgaagaatgagc 115619 Query: 63 cggcgactcataggcagtggcttggttaagggaacggaacccaccggagccgtagcgaaa 122 |||||||| |||||||||||| ||||||||||| | |||||||||||||||||||| Sbjct: 115618 cggcgacttataggcagtggcctggttaagggagc-----ccaccggagccgtagcgaaa 115564 Query: 123 gcgagtcttaatagggcgattgtcactgcttatggacccgaacctgggtgatctatccat 182 ||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 115563 gcgagtcttcttagggcaattgtcactgcttatggacccgaacctgggtgatctatccat 115504 Query: 183 gacca 187 ||||| Sbjct: 115503 gacca 115499 Score = 232 bits (117), Expect = 3e-58 Identities = 168/185 (90%), Gaps = 5/185 (2%) Strand = Plus / Plus Query: 3 agctcccaaccagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgagc 62 ||||||||| |||||||||| ||| |||||||||||||||||||||||||||||||| Sbjct: 86442 agctcccaagcagtgggaggagaattgaatctctgaccgcgtgcctgttgaagaatgagc 86501 Query: 63 cggcgactcataggcagtggcttggttaagggaacggaacccaccggagccgtagcgaaa 122 |||||||| |||||||||||| ||||||||||| | |||||||||||||||||||| Sbjct: 86502 cggcgacttataggcagtggcctggttaagggagc-----ccaccggagccgtagcgaaa 86556 Query: 123 gcgagtcttaatagggcgattgtcactgcttatggacccgaacctgggtgatctatccat 182 ||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 86557 gcgagtcttcttagggcaattgtcactgcttatggacccgaacctgggtgatctatccat 86616 Query: 183 gacca 187 ||||| Sbjct: 86617 gacca 86621
>gb|AF393606.1| Pellia neesiana large subunit ribosomal RNA (rrl) gene, complete sequence; chloroplast gene for chloroplast product Length = 2989 Score = 232 bits (117), Expect = 3e-58 Identities = 168/185 (90%), Gaps = 5/185 (2%) Strand = Plus / Plus Query: 3 agctcccaaccagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgagc 62 ||||||||| |||||||||| ||| ||||||||||||||||||||||||||||||||| Sbjct: 537 agctcccaagcagtgggaggagaatcggatctctgaccgcgtgcctgttgaagaatgagc 596 Query: 63 cggcgactcataggcagtggcttggttaagggaacggaacccaccggagccgtagcgaaa 122 |||||||| |||||||||||| ||||||||||||| |||||||||||||||||||| Sbjct: 597 cggcgacttataggcagtggcctggttaagggaac-----ccaccggagccgtagcgaaa 651 Query: 123 gcgagtcttaatagggcgattgtcactgcttatggacccgaacctgggtgatctatccat 182 || |||||| | |||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 652 gcaagtcttcctggggcaattgtcactgcttatggacccgaacctgggtgatctatccat 711 Query: 183 gacca 187 ||||| Sbjct: 712 gacca 716
>dbj|AP004638.1| Psilotum nudum chloroplast DNA, complete genome Length = 138829 Score = 232 bits (117), Expect = 3e-58 Identities = 168/185 (90%), Gaps = 5/185 (2%) Strand = Plus / Minus Query: 3 agctcccaaccagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgagc 62 ||||||||| |||||||||| ||| ||||||||||||| |||||||||| |||||||| Sbjct: 127908 agctcccaagcagtgggaggagaattggatctctgaccgcatgcctgttgaggaatgagc 127849 Query: 63 cggcgactcataggcagtggcttggttaagggaacggaacccaccggagccgtagcgaaa 122 ||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| Sbjct: 127848 cggcgactcataggcagtggcctggttaagggaac-----ccaccggagccgtagcgaaa 127794 Query: 123 gcgagtcttaatagggcgattgtcactgcttatggacccgaacctgggtgatctatccat 182 ||||||||| |||||| |||||||||||| ||||||||||||||||||||||||||||| Sbjct: 127793 gcgagtcttcctagggcaattgtcactgctcatggacccgaacctgggtgatctatccat 127734 Query: 183 gacca 187 ||||| Sbjct: 127733 gacca 127729 Score = 232 bits (117), Expect = 3e-58 Identities = 168/185 (90%), Gaps = 5/185 (2%) Strand = Plus / Plus Query: 3 agctcccaaccagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgagc 62 ||||||||| |||||||||| ||| ||||||||||||| |||||||||| |||||||| Sbjct: 95539 agctcccaagcagtgggaggagaattggatctctgaccgcatgcctgttgaggaatgagc 95598 Query: 63 cggcgactcataggcagtggcttggttaagggaacggaacccaccggagccgtagcgaaa 122 ||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| Sbjct: 95599 cggcgactcataggcagtggcctggttaagggaac-----ccaccggagccgtagcgaaa 95653 Query: 123 gcgagtcttaatagggcgattgtcactgcttatggacccgaacctgggtgatctatccat 182 ||||||||| |||||| |||||||||||| ||||||||||||||||||||||||||||| Sbjct: 95654 gcgagtcttcctagggcaattgtcactgctcatggacccgaacctgggtgatctatccat 95713 Query: 183 gacca 187 ||||| Sbjct: 95714 gacca 95718
>emb|Y08501.2|MIATGENA Arabidopsis thaliana mitochondrial genome Length = 366924 Score = 230 bits (116), Expect = 1e-57 Identities = 147/156 (94%), Gaps = 6/156 (3%) Strand = Plus / Plus Query: 33 ctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaag 92 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 364743 ctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaag 364802 Query: 93 ggaacggaacccaccggagccgtagcgaaa-gcgagtcttaatagggcgattgtcactgc 151 ||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||| Sbjct: 364803 -----ggaacccaccggagccgtagcgaaaggcgagtcttcatagggcaattgtcactgc 364857 Query: 152 ttatggacccgaacctgggtgatctatccatgacca 187 |||||||||||||||||||||||||||| ||||||| Sbjct: 364858 ttatggacccgaacctgggtgatctatctatgacca 364893
>gb|M81884.1|EPFCPCG Epifagus virginiana chloroplast, complete genome Length = 70028 Score = 228 bits (115), Expect = 5e-57 Identities = 145/155 (93%), Gaps = 5/155 (3%) Strand = Plus / Minus Query: 33 ctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaag 92 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 52125 ctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagcggcttggttaag 52066 Query: 93 ggaacggaacccaccggagccgtagcgaaagcgagtcttaatagggcgattgtcactgct 152 ||||| ||||||||||| |||||||||||||| || ||||||| |||||||||||| Sbjct: 52065 ggaac-----ccaccggagccatagcgaaagcgagtattcatagggcaattgtcactgct 52011 Query: 153 tatggacccgaacctgggtgatctatccatgacca 187 ||||||||||||||||||||||||||||||||||| Sbjct: 52010 tatggacccgaacctgggtgatctatccatgacca 51976 Score = 228 bits (115), Expect = 5e-57 Identities = 145/155 (93%), Gaps = 5/155 (3%) Strand = Plus / Plus Query: 33 ctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaag 92 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 37703 ctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagcggcttggttaag 37762 Query: 93 ggaacggaacccaccggagccgtagcgaaagcgagtcttaatagggcgattgtcactgct 152 ||||| ||||||||||| |||||||||||||| || ||||||| |||||||||||| Sbjct: 37763 ggaac-----ccaccggagccatagcgaaagcgagtattcatagggcaattgtcactgct 37817 Query: 153 tatggacccgaacctgggtgatctatccatgacca 187 ||||||||||||||||||||||||||||||||||| Sbjct: 37818 tatggacccgaacctgggtgatctatccatgacca 37852
>gb|AF355766.1| Amaranthus hypochondriacus 23S ribosomal RNA gene, complete sequence; chloroplast gene for chloroplast product Length = 2899 Score = 228 bits (115), Expect = 5e-57 Identities = 145/155 (93%), Gaps = 5/155 (3%) Strand = Plus / Plus Query: 33 ctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaag 92 |||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||||||| Sbjct: 567 ctctgaacgcgtgcctgttgaaaaatgagccggcgactcatacgcagtggcttggttaag 626 Query: 93 ggaacggaacccaccggagccgtagcgaaagcgagtcttaatagggcgattgtcactgct 152 ||||| ||||||||||||||||||||||||||||| ||||||| |||||||||||| Sbjct: 627 ggaac-----ccaccggagccgtagcgaaagcgagtcttcatagggcaattgtcactgct 681 Query: 153 tatggacccgaacctgggtgatctatccatgacca 187 ||||||||||||||||||||||||||||||||||| Sbjct: 682 tatggacccgaacctgggtgatctatccatgacca 716
>dbj|AP004610.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1109A06 Length = 171438 Score = 228 bits (115), Expect = 5e-57 Identities = 115/115 (100%) Strand = Plus / Minus Query: 2 gagctcccaaccagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgag 61 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 107989 gagctcccaaccagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgag 107930 Query: 62 ccggcgactcataggcagtggcttggttaagggaacggaacccaccggagccgta 116 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 107929 ccggcgactcataggcagtggcttggttaagggaacggaacccaccggagccgta 107875
>emb|X62099.1|CHEVIARRN E.virginiana plastid ribosomal RNA operon, trnI and trnA pseudogenes Length = 7395 Score = 228 bits (115), Expect = 5e-57 Identities = 145/155 (93%), Gaps = 5/155 (3%) Strand = Plus / Plus Query: 33 ctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaag 92 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 4631 ctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagcggcttggttaag 4690 Query: 93 ggaacggaacccaccggagccgtagcgaaagcgagtcttaatagggcgattgtcactgct 152 ||||| ||||||||||| |||||||||||||| || ||||||| |||||||||||| Sbjct: 4691 ggaac-----ccaccggagccatagcgaaagcgagtattcatagggcaattgtcactgct 4745 Query: 153 tatggacccgaacctgggtgatctatccatgacca 187 ||||||||||||||||||||||||||||||||||| Sbjct: 4746 tatggacccgaacctgggtgatctatccatgacca 4780
>gb|AF393577.1| Bazzania trilobata large subunit ribosomal RNA (rrl) gene, partial sequence; chloroplast gene for chloroplast product Length = 2945 Score = 226 bits (114), Expect = 2e-56 Identities = 168/185 (90%), Gaps = 2/185 (1%) Strand = Plus / Plus Query: 3 agctcccaaccagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgagc 62 |||| |||| |||||||||| ||| ||||||||||||||||||||||||||||||||| Sbjct: 516 agcttccaagcagtgggaggagaatcggatctctgaccgcgtgcctgttgaagaatgagc 575 Query: 63 cggcgactcataggcagtggcttggttaagggaacggaacccaccggagccgtagcgaaa 122 |||||||| |||||||||||| |||||||||||| | | ||||||||||| |||||||| Sbjct: 576 cggcgacttataggcagtggcctggttaagggaaagaa--ccaccggagccatagcgaaa 633 Query: 123 gcgagtcttaatagggcgattgtcactgcttatggacccgaacctgggtgatctatccat 182 ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 634 gcgagtcttcccagggcaattgtcactgcttatggacccgaacctgggtgatctatccat 693 Query: 183 gacca 187 ||||| Sbjct: 694 gacca 698
>gb|AF393587.1| Climacium dendroides large subunit ribosomal RNA (rrl) gene, complete sequence; chloroplast gene for chloroplast product Length = 3020 Score = 224 bits (113), Expect = 7e-56 Identities = 167/185 (90%), Gaps = 5/185 (2%) Strand = Plus / Plus Query: 3 agctcccaaccagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgagc 62 ||||||||| |||||||||| ||| |||||||||||||||||||||||||||||||| Sbjct: 533 agctcccaagcagtgggaggagaatcgaatctctgaccgcgtgcctgttgaagaatgagc 592 Query: 63 cggcgactcataggcagtggcttggttaagggaacggaacccaccggagccgtagcgaaa 122 |||||||| ||||| |||||| ||||||||||||| |||||||||||||||||||| Sbjct: 593 cggcgacttataggtagtggcctggttaagggaac-----ccaccggagccgtagcgaaa 647 Query: 123 gcgagtcttaatagggcgattgtcactgcttatggacccgaacctgggtgatctatccat 182 ||||||||| |||||| ||||||||| |||||||||||||||||||||||||||||||| Sbjct: 648 gcgagtcttcctagggcaattgtcactacttatggacccgaacctgggtgatctatccat 707 Query: 183 gacca 187 ||||| Sbjct: 708 gacca 712
>emb|X59768.1|CA23SRR C.americana 23S rRNA gene Length = 2902 Score = 220 bits (111), Expect = 1e-54 Identities = 144/155 (92%), Gaps = 5/155 (3%) Strand = Plus / Plus Query: 33 ctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaag 92 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 560 ctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagcggcttggttaag 619 Query: 93 ggaacggaacccaccggagccgtagcgaaagcgagtcttaatagggcgattgtcactgct 152 ||||| ||||||||||| |||||||||||||| || ||||| | |||||||||||| Sbjct: 620 ggaac-----ccaccggagccatagcgaaagcgagtattcataggactattgtcactgct 674 Query: 153 tatggacccgaacctgggtgatctatccatgacca 187 ||||||||||||||||||||||||||||||||||| Sbjct: 675 tatggacccgaacctgggtgatctatccatgacca 709
>gb|AF355764.1| Rhizophora mangle 23S ribosomal RNA gene, complete sequence; chloroplast gene for chloroplast product Length = 2883 Score = 220 bits (111), Expect = 1e-54 Identities = 144/155 (92%), Gaps = 5/155 (3%) Strand = Plus / Plus Query: 33 ctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaag 92 |||||| ||||||||||||||||||| | ||||||||||||||||||||||||||||||| Sbjct: 581 ctctgaacgcgtgcctgttgaagaattaaccggcgactcataggcagtggcttggttaag 640 Query: 93 ggaacggaacccaccggagccgtagcgaaagcgagtcttaatagggcgattgtcactgct 152 ||||| ||||||||||||||||||||||||||||| |||||| |||||||||||| Sbjct: 641 ggaac-----ccaccggagccgtagcgaaagcgagtcttcgtagggcaattgtcactgct 695 Query: 153 tatggacccgaacctgggtgatctatccatgacca 187 ||||||||||||||||||||||||||||||||||| Sbjct: 696 tatggacccgaacctgggtgatctatccatgacca 730
>gb|AF393576.1| Anthoceros punctatus small subunit ribosomal RNA (rrs) gene, partial sequence; tRNA-Ile (trnI(gau)) and tRNA-Ala (trnA(ugc)) genes, complete sequence; large subunit ribosomal RNA (rrl) and 5S ribosomal RNA (rrf) genes, complete sequence; and tRNA-Arg (trnR(acg)) gene, partial sequence; chloroplast genes for chloroplast products Length = 8235 Score = 218 bits (110), Expect = 5e-54 Identities = 146/158 (92%), Gaps = 5/158 (3%) Strand = Plus / Plus Query: 30 gatctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggtt 89 ||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| Sbjct: 4449 gatctctgaccgcgtgcctgttgaagaatgagccggcgacttataggcagtggcctggtt 4508 Query: 90 aagggaacggaacccaccggagccgtagcgaaagcgagtcttaatagggcgattgtcact 149 ||||||| |||||||||||||||||||||||||||| |||||| ||||||||| Sbjct: 4509 aagggaatt-----caccggagccgtagcgaaagcgagtcttcctagggcaattgtcact 4563 Query: 150 gcttatggacccgaacctgggtgatctatccatgacca 187 |||||||||||||||||||||||||||||||||||||| Sbjct: 4564 gcttatggacccgaacctgggtgatctatccatgacca 4601
>dbj|AB087478.1| Anthoceros formosae chloroplast 23S rRNA, complete sequence Length = 2819 Score = 218 bits (110), Expect = 5e-54 Identities = 146/158 (92%), Gaps = 5/158 (3%) Strand = Plus / Plus Query: 30 gatctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggtt 89 ||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| Sbjct: 559 gatctctgaccgcgtgcctgttgaagaatgagccggcgacttataggcagtggcctggtt 618 Query: 90 aagggaacggaacccaccggagccgtagcgaaagcgagtcttaatagggcgattgtcact 149 ||||||| |||||||||||||||||||||||||||| |||||| ||||||||| Sbjct: 619 aagggaatt-----caccggagccgtagcgaaagcgagtcttcctagggcaattgtcact 673 Query: 150 gcttatggacccgaacctgggtgatctatccatgacca 187 |||||||||||||||||||||||||||||||||||||| Sbjct: 674 gcttatggacccgaacctgggtgatctatccatgacca 711
>dbj|AB086179.1| Anthoceros formosae chloroplast DNA, complete genome Length = 161162 Score = 218 bits (110), Expect = 5e-54 Identities = 146/158 (92%), Gaps = 5/158 (3%) Strand = Plus / Minus Query: 30 gatctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggtt 89 ||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| Sbjct: 150686 gatctctgaccgcgtgcctgttgaagaatgagccggcgacttataggcagtggcctggtt 150627 Query: 90 aagggaacggaacccaccggagccgtagcgaaagcgagtcttaatagggcgattgtcact 149 ||||||| |||||||||||||||||||||||||||| |||||| ||||||||| Sbjct: 150626 aagggaatt-----caccggagccgtagcgaaagcgagtcttcctagggcaattgtcact 150572 Query: 150 gcttatggacccgaacctgggtgatctatccatgacca 187 |||||||||||||||||||||||||||||||||||||| Sbjct: 150571 gcttatggacccgaacctgggtgatctatccatgacca 150534 Score = 218 bits (110), Expect = 5e-54 Identities = 146/158 (92%), Gaps = 5/158 (3%) Strand = Plus / Plus Query: 30 gatctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggtt 89 ||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| Sbjct: 117980 gatctctgaccgcgtgcctgttgaagaatgagccggcgacttataggcagtggcctggtt 118039 Query: 90 aagggaacggaacccaccggagccgtagcgaaagcgagtcttaatagggcgattgtcact 149 ||||||| |||||||||||||||||||||||||||| |||||| ||||||||| Sbjct: 118040 aagggaatt-----caccggagccgtagcgaaagcgagtcttcctagggcaattgtcact 118094 Query: 150 gcttatggacccgaacctgggtgatctatccatgacca 187 |||||||||||||||||||||||||||||||||||||| Sbjct: 118095 gcttatggacccgaacctgggtgatctatccatgacca 118132
>dbj|AB073981.1| Anthoceros formosae chloroplast gene for 23S ribosomal RNA, complete sequence Length = 3503 Score = 218 bits (110), Expect = 5e-54 Identities = 146/158 (92%), Gaps = 5/158 (3%) Strand = Plus / Plus Query: 30 gatctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggtt 89 ||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| Sbjct: 559 gatctctgaccgcgtgcctgttgaagaatgagccggcgacttataggcagtggcctggtt 618 Query: 90 aagggaacggaacccaccggagccgtagcgaaagcgagtcttaatagggcgattgtcact 149 ||||||| |||||||||||||||||||||||||||| |||||| ||||||||| Sbjct: 619 aagggaatt-----caccggagccgtagcgaaagcgagtcttcctagggcaattgtcact 673 Query: 150 gcttatggacccgaacctgggtgatctatccatgacca 187 |||||||||||||||||||||||||||||||||||||| Sbjct: 674 gcttatggacccgaacctgggtgatctatccatgacca 711
>emb|AJ007508.1|GGN7508 Gnetum gnemon chloroplast psaC, ccsA, 4.5S rRNA, 5S rRNA, 16S rRNA (partial), 23S rRNA, and tRNA (Leu, Asn, Arg, Ala and Ile) genes Length = 9493 Score = 216 bits (109), Expect = 2e-53 Identities = 164/181 (90%), Gaps = 6/181 (3%) Strand = Plus / Minus Query: 8 ccaaccagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgagccggcg 67 |||| |||||||||| ||| | |||||||||||||||||| |||||||||||||||||| Sbjct: 6010 ccaagcagtgggaggagaatggaatctctgaccgcgtgccttttgaagaatgagccggcg 5951 Query: 68 actcataggcagtggcttggttaagggaacggaacccaccggagccgtagcgaaagcgag 127 ||| ||||||||||||||||||||||| || |||||||||||||||||| |||||| Sbjct: 5950 acttataggcagtggcttggttaagggcac-----ccaccggagccgtagcgagagcgag 5896 Query: 128 tcttaatagggcgattgtcactgc-ttatggacccgaacctgggtgatctatccatgacc 186 |||| ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 5895 tcttcatagggcaattgtcactgctttatggacccgaacctgggtgatctatccatgacc 5836 Query: 187 a 187 | Sbjct: 5835 a 5835
>dbj|AB064524.1| Physcomitrella patens subsp. patens chloroplast genes for tRNA-Ile(GAU), tRNA-Ala(UGC), 23S rRNA, partial sequence Length = 2767 Score = 216 bits (109), Expect = 2e-53 Identities = 166/185 (89%), Gaps = 5/185 (2%) Strand = Plus / Plus Query: 3 agctcccaaccagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgagc 62 ||||||||| |||||||||| ||| |||||||||||||||||||||||||||||||| Sbjct: 2577 agctcccaagcagtgggaggagaatcgaatctctgaccgcgtgcctgttgaagaatgagc 2636 Query: 63 cggcgactcataggcagtggcttggttaagggaacggaacccaccggagccgtagcgaaa 122 |||||||| ||||| |||||| ||||||||||||| |||||||||||||||||||| Sbjct: 2637 cggcgacttataggtagtggcctggttaagggaac-----ccaccggagccgtagcgaaa 2691 Query: 123 gcgagtcttaatagggcgattgtcactgcttatggacccgaacctgggtgatctatccat 182 ||||||||| |||||| ||||||||| ||||||||||||||||||||||||||| |||| Sbjct: 2692 gcgagtcttcctagggcaattgtcactacttatggacccgaacctgggtgatctaaccat 2751 Query: 183 gacca 187 ||||| Sbjct: 2752 gacca 2756
>gb|AF393612.1| Sphagnum rubellum large subunit ribosomal RNA (rrl) gene, complete sequence; chloroplast gene for chloroplast product Length = 3033 Score = 216 bits (109), Expect = 2e-53 Identities = 166/185 (89%), Gaps = 5/185 (2%) Strand = Plus / Plus Query: 3 agctcccaaccagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgagc 62 ||||||||| |||||||||| ||| ||||||||||||||||||||||||||||||||| Sbjct: 533 agctcccaagcagtgggaggagaatcggatctctgaccgcgtgcctgttgaagaatgagc 592 Query: 63 cggcgactcataggcagtggcttggttaagggaacggaacccaccggagccgtagcgaaa 122 |||||||| ||||| |||||| |||||||||| || |||||||||||||||||||| Sbjct: 593 cggcgacttataggtagtggcctggttaaggggac-----ccaccggagccgtagcgaaa 647 Query: 123 gcgagtcttaatagggcgattgtcactgcttatggacccgaacctgggtgatctatccat 182 ||||||||| | |||| ||||||||| |||||||||||||||||||||||||||||||| Sbjct: 648 gcgagtcttcctggggcaattgtcactacttatggacccgaacctgggtgatctatccat 707 Query: 183 gacca 187 ||||| Sbjct: 708 gacca 712
>dbj|AP005672.1| Physcomitrella patens subsp. patens chloroplast DNA, complete genome Length = 122890 Score = 216 bits (109), Expect = 2e-53 Identities = 166/185 (89%), Gaps = 5/185 (2%) Strand = Plus / Minus Query: 3 agctcccaaccagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgagc 62 ||||||||| |||||||||| ||| |||||||||||||||||||||||||||||||| Sbjct: 117616 agctcccaagcagtgggaggagaatcgaatctctgaccgcgtgcctgttgaagaatgagc 117557 Query: 63 cggcgactcataggcagtggcttggttaagggaacggaacccaccggagccgtagcgaaa 122 |||||||| ||||| |||||| ||||||||||||| |||||||||||||||||||| Sbjct: 117556 cggcgacttataggtagtggcctggttaagggaac-----ccaccggagccgtagcgaaa 117502 Query: 123 gcgagtcttaatagggcgattgtcactgcttatggacccgaacctgggtgatctatccat 182 ||||||||| |||||| ||||||||| ||||||||||||||||||||||||||| |||| Sbjct: 117501 gcgagtcttcctagggcaattgtcactacttatggacccgaacctgggtgatctaaccat 117442 Query: 183 gacca 187 ||||| Sbjct: 117441 gacca 117437 Score = 216 bits (109), Expect = 2e-53 Identities = 166/185 (89%), Gaps = 5/185 (2%) Strand = Plus / Plus Query: 3 agctcccaaccagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgagc 62 ||||||||| |||||||||| ||| |||||||||||||||||||||||||||||||| Sbjct: 90486 agctcccaagcagtgggaggagaatcgaatctctgaccgcgtgcctgttgaagaatgagc 90545 Query: 63 cggcgactcataggcagtggcttggttaagggaacggaacccaccggagccgtagcgaaa 122 |||||||| ||||| |||||| ||||||||||||| |||||||||||||||||||| Sbjct: 90546 cggcgacttataggtagtggcctggttaagggaac-----ccaccggagccgtagcgaaa 90600 Query: 123 gcgagtcttaatagggcgattgtcactgcttatggacccgaacctgggtgatctatccat 182 ||||||||| |||||| ||||||||| ||||||||||||||||||||||||||| |||| Sbjct: 90601 gcgagtcttcctagggcaattgtcactacttatggacccgaacctgggtgatctaaccat 90660 Query: 183 gacca 187 ||||| Sbjct: 90661 gacca 90665
>gb|AF393582.1| Chaetosphaeridium globosum SAG 26.98 large subunit ribosomal RNA (rrl) gene, complete sequence; chloroplast gene for chloroplast product Length = 2875 Score = 200 bits (101), Expect = 1e-48 Identities = 141/153 (92%), Gaps = 6/153 (3%) Strand = Plus / Plus Query: 31 atctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggtta 90 |||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| Sbjct: 562 atctctgaccgcgtgcctgttgaagaatgagccggcgacttataggcagtggcgtggtta 621 Query: 91 agggaacggaacccaccggagccgtagcgaaagcgagtcttaatagggcgattgtcactg 150 |||||| ||||||||||||||||||||||||||| || |||||||||||||||| Sbjct: 622 agggaatt-----caccggagccgtagcgaaagcgagtct-aacagggcgattgtcactg 675 Query: 151 cttatggacccgaacctgggtgatctatccatg 183 |||||||||||||||| |||||||||||||||| Sbjct: 676 cttatggacccgaacccgggtgatctatccatg 708
>gb|AF494278.1| Chaetosphaeridium globosum chloroplast, complete genome Length = 131183 Score = 200 bits (101), Expect = 1e-48 Identities = 141/153 (92%), Gaps = 6/153 (3%) Strand = Plus / Minus Query: 31 atctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggtta 90 |||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| Sbjct: 124703 atctctgaccgcgtgcctgttgaagaatgagccggcgacttataggcagtggcgtggtta 124644 Query: 91 agggaacggaacccaccggagccgtagcgaaagcgagtcttaatagggcgattgtcactg 150 |||||| ||||||||||||||||||||||||||| || |||||||||||||||| Sbjct: 124643 agggaatt-----caccggagccgtagcgaaagcgagtct-aacagggcgattgtcactg 124590 Query: 151 cttatggacccgaacctgggtgatctatccatg 183 |||||||||||||||| |||||||||||||||| Sbjct: 124589 cttatggacccgaacccgggtgatctatccatg 124557 Score = 200 bits (101), Expect = 1e-48 Identities = 141/153 (92%), Gaps = 6/153 (3%) Strand = Plus / Plus Query: 31 atctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggtta 90 |||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| Sbjct: 95163 atctctgaccgcgtgcctgttgaagaatgagccggcgacttataggcagtggcgtggtta 95222 Query: 91 agggaacggaacccaccggagccgtagcgaaagcgagtcttaatagggcgattgtcactg 150 |||||| ||||||||||||||||||||||||||| || |||||||||||||||| Sbjct: 95223 agggaatt-----caccggagccgtagcgaaagcgagtct-aacagggcgattgtcactg 95276 Query: 151 cttatggacccgaacctgggtgatctatccatg 183 |||||||||||||||| |||||||||||||||| Sbjct: 95277 cttatggacccgaacccgggtgatctatccatg 95309
>gb|AF355760.1| Rhizophora mucronata 23S ribosomal RNA gene, complete sequence; chloroplast gene for chloroplast product Length = 2902 Score = 198 bits (100), Expect = 4e-48 Identities = 144/156 (92%), Gaps = 7/156 (4%) Strand = Plus / Plus Query: 33 ctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaag 92 |||||| ||||||||||||||| ||||||||||||||||||||| ||||||||||||||| Sbjct: 581 ctctgaacgcgtgcctgttgaa-aatgagccggcgactcataggaagtggcttggttaag 639 Query: 93 ggaacggaacccaccgga-gccgtagcgaaagcgagtcttaatagggcgattgtcactgc 151 ||||| |||||||| ||||||||||||||||||||| |||||| ||||||||||| Sbjct: 640 ggaac-----ccaccggaagccgtagcgaaagcgagtcttcgtagggcaattgtcactgc 694 Query: 152 ttatggacccgaacctgggtgatctatccatgacca 187 |||||||||||||||||||||||||||||||||||| Sbjct: 695 ttatggacccgaacctgggtgatctatccatgacca 730
>dbj|AB197035.2| Selaginella uncinata chloroplast DNA, complete genome Length = 144170 Score = 192 bits (97), Expect = 3e-46 Identities = 163/185 (88%), Gaps = 5/185 (2%) Strand = Plus / Minus Query: 3 agctcccaaccagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgagc 62 ||||||| | |||||||||| ||| ||||||||||||||||||||||||||||||||| Sbjct: 138735 agctcccgagcagtgggaggagaattggatctctgaccgcgtgcctgttgaagaatgagc 138676 Query: 63 cggcgactcataggcagtggcttggttaagggaacggaacccaccggagccgtagcgaaa 122 |||||||| |||||| | ||| ||||||||||||| |||||||||||||||||||| Sbjct: 138675 cggcgacttataggcggcggcctggttaagggaac-----ccaccggagccgtagcgaaa 138621 Query: 123 gcgagtcttaatagggcgattgtcactgcttatggacccgaacctgggtgatctatccat 182 ||||||||| ||||| | |||| ||||||||||||||||||| ||||||||||||||| Sbjct: 138620 gcgagtcttcccagggcaactgtcgctgcttatggacccgaacccgggtgatctatccat 138561 Query: 183 gacca 187 ||||| Sbjct: 138560 gacca 138556 Score = 192 bits (97), Expect = 3e-46 Identities = 163/185 (88%), Gaps = 5/185 (2%) Strand = Plus / Plus Query: 3 agctcccaaccagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgagc 62 ||||||| | |||||||||| ||| ||||||||||||||||||||||||||||||||| Sbjct: 83142 agctcccgagcagtgggaggagaattggatctctgaccgcgtgcctgttgaagaatgagc 83201 Query: 63 cggcgactcataggcagtggcttggttaagggaacggaacccaccggagccgtagcgaaa 122 |||||||| |||||| | ||| ||||||||||||| |||||||||||||||||||| Sbjct: 83202 cggcgacttataggcggcggcctggttaagggaac-----ccaccggagccgtagcgaaa 83256 Query: 123 gcgagtcttaatagggcgattgtcactgcttatggacccgaacctgggtgatctatccat 182 ||||||||| ||||| | |||| ||||||||||||||||||| ||||||||||||||| Sbjct: 83257 gcgagtcttcccagggcaactgtcgctgcttatggacccgaacccgggtgatctatccat 83316 Query: 183 gacca 187 ||||| Sbjct: 83317 gacca 83321
>emb|AJ318074.1|CSA318074 Cucumis sativus chloroplast ccsA gene, ndhD gene (partial), 4.5S rRNA gene, 23S rRNA gene (partial) and 5S rRNA gene Length = 6689 Score = 190 bits (96), Expect = 1e-45 Identities = 142/156 (91%), Gaps = 6/156 (3%) Strand = Plus / Plus Query: 33 ctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggc-ttggttaa 91 |||||||||||||||||||||||||||||||||||||||||| || | |||||||| Sbjct: 20 ctctgaccgcgtgcctgttgaagaatgagccggcgactcataacggatgacgttggttaa 79 Query: 92 gggaacggaacccaccggagccgtagcgaaagcgagtcttaatagggcgattgtcactgc 151 | |||||||||||||||||||||||||||||||||| ||||||| ||||||||||| Sbjct: 80 g-----ggaacccaccggagccgtagcgaaagcgagtcttcatagggcaattgtcactgc 134 Query: 152 ttatggacccgaacctgggtgatctatccatgacca 187 |||||||||||||||||||||||||||||||||||| Sbjct: 135 ttatggacccgaacctgggtgatctatccatgacca 170
>gb|AF355761.1| Rhizophora stylosa 23S ribosomal RNA gene, complete sequence; chloroplast gene for chloroplast product Length = 2894 Score = 188 bits (95), Expect = 4e-45 Identities = 141/155 (90%), Gaps = 6/155 (3%) Strand = Plus / Plus Query: 33 ctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaag 92 |||||| |||||||||||| || ||||||||| ||||||||||| ||||||||||||||| Sbjct: 581 ctctgaacgcgtgcctgtttaaaaatgagccg-cgactcataggaagtggcttggttaag 639 Query: 93 ggaacggaacccaccggagccgtagcgaaagcgagtcttaatagggcgattgtcactgct 152 ||||| ||| ||||||||||||||||||||||||| |||||| |||||||||||| Sbjct: 640 ggaac-----ccaacggagccgtagcgaaagcgagtcttcgtagggcaattgtcactgct 694 Query: 153 tatggacccgaacctgggtgatctatccatgacca 187 ||||||||||||||||||||||||||||||||||| Sbjct: 695 tatggacccgaacctgggtgatctatccatgacca 729
>gb|AF355763.1| Rhizophora apiculata 23S ribosomal RNA gene, complete sequence; chloroplast gene for chloroplast product Length = 2913 Score = 186 bits (94), Expect = 2e-44 Identities = 141/155 (90%), Gaps = 5/155 (3%) Strand = Plus / Plus Query: 33 ctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaag 92 |||||| ||||||||||||||| ||||| ||| ||| ||||| |||||||||||||||| Sbjct: 581 ctctgaacgcgtgcctgttgaaaaatgacccg-cgaatcataagcagtggcttggttaac 639 Query: 93 ggaacggaacccaccggagccgtagcgaaagcgagtcttaatagggcgattgtcactgct 152 || ||||||||||||||||||||||||||||||||| |||||| |||||||||||| Sbjct: 640 gg----gaacccaccggagccgtagcgaaagcgagtcttcgtagggcaattgtcactgct 695 Query: 153 tatggacccgaacctgggtgatctatccatgacca 187 ||||||||||||||||||||||||||||||||||| Sbjct: 696 tatggacccgaacctgggtgatctatccatgacca 730
>dbj|AK059835.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-206-C02, full insert sequence Length = 1395 Score = 184 bits (93), Expect = 6e-44 Identities = 96/97 (98%) Strand = Plus / Plus Query: 2 gagctcccaaccagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgag 61 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 530 gagctcccaagcagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgag 589 Query: 62 ccggcgactcataggcagtggcttggttaagggaacg 98 ||||||||||||||||||||||||||||||||||||| Sbjct: 590 ccggcgactcataggcagtggcttggttaagggaacg 626
>gb|L42844.1|CSKCPRGOL Cosmarium botrytis large subunit ribosomal RNA gene, complete sequence; chloroplast gene for chloroplast product Length = 2669 Score = 180 bits (91), Expect = 1e-42 Identities = 156/176 (88%), Gaps = 5/176 (2%) Strand = Plus / Plus Query: 8 ccaaccagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgagccggcg 67 |||| |||||||||| ||| | ||||||||||||||||||||||||||||||||||||| Sbjct: 537 ccaagcagtgggaggagaatggaatctctgaccgcgtgcctgttgaagaatgagccggcg 596 Query: 68 actcataggcagtggcttggttaagggaacggaacccaccggagccgtagcgaaagcgag 127 ||| |||||||||||| ||||||||| | ||| || |||||||||||||||||||| Sbjct: 597 acttataggcagtggcctggttaaggcga--gaagcc---ggagccgtagcgaaagcgag 651 Query: 128 tcttaatagggcgattgtcactgcttatggacccgaacctgggtgatctatccatg 183 |||| |||||||| |||||||||||||||||||||||| |||||||||| ||||| Sbjct: 652 tctttctagggcgaatgtcactgcttatggacccgaacccgggtgatctaaccatg 707
>gb|AF393590.1| Cosmarium botrytis large subunit ribosomal RNA (rrl) gene, partial sequence; chloroplast gene for chloroplast product Length = 2825 Score = 180 bits (91), Expect = 1e-42 Identities = 156/176 (88%), Gaps = 5/176 (2%) Strand = Plus / Plus Query: 8 ccaaccagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgagccggcg 67 |||| |||||||||| ||| | ||||||||||||||||||||||||||||||||||||| Sbjct: 550 ccaagcagtgggaggagaatggaatctctgaccgcgtgcctgttgaagaatgagccggcg 609 Query: 68 actcataggcagtggcttggttaagggaacggaacccaccggagccgtagcgaaagcgag 127 ||| |||||||||||| ||||||||| | ||| || |||||||||||||||||||| Sbjct: 610 acttataggcagtggcctggttaaggcga--gaagcc---ggagccgtagcgaaagcgag 664 Query: 128 tcttaatagggcgattgtcactgcttatggacccgaacctgggtgatctatccatg 183 |||| |||||||| |||||||||||||||||||||||| |||||||||| ||||| Sbjct: 665 tctttctagggcgaatgtcactgcttatggacccgaacccgggtgatctaaccatg 720
>gb|AY178864.1| Adiantum capillus-veneris chloroplast, complete genome Length = 150568 Score = 178 bits (90), Expect = 4e-42 Identities = 164/186 (88%), Gaps = 2/186 (1%) Strand = Plus / Plus Query: 2 gagctcccaaccagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgag 61 |||||||||| |||||||||| ||| | ||||||| |||||||||||||||||||||||| Sbjct: 144451 gagctcccaagcagtgggaggagaatgagatctctaaccgcgtgcctgttgaagaatgag 144510 Query: 62 ccggcgactcataggcagtggcttggttaagggaacggaacccaccggagccgtagcgaa 121 ||||||||| ||||| ||||| ||||||||| | ||||| |||||||||||||||| Sbjct: 144511 ccggcgacttgtaggcggtggcccggttaagggggag-aaccc-ccggagccgtagcgaa 144568 Query: 122 agcgagtcttaatagggcgattgtcactgcttatggacccgaacctgggtgatctatcca 181 |||||||||| | |||| |||||||| |||||| |||||||||||||||||||||||| Sbjct: 144569 agcgagtcttgctggggcaattgtcaccgcttataaacccgaacctgggtgatctatcca 144628 Query: 182 tgacca 187 |||||| Sbjct: 144629 tgacca 144634 Score = 178 bits (90), Expect = 4e-42 Identities = 164/186 (88%), Gaps = 2/186 (1%) Strand = Plus / Minus Query: 2 gagctcccaaccagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgag 61 |||||||||| |||||||||| ||| | ||||||| |||||||||||||||||||||||| Sbjct: 88400 gagctcccaagcagtgggaggagaatgagatctctaaccgcgtgcctgttgaagaatgag 88341 Query: 62 ccggcgactcataggcagtggcttggttaagggaacggaacccaccggagccgtagcgaa 121 ||||||||| ||||| ||||| ||||||||| | ||||| |||||||||||||||| Sbjct: 88340 ccggcgacttgtaggcggtggcccggttaagggggag-aaccc-ccggagccgtagcgaa 88283 Query: 122 agcgagtcttaatagggcgattgtcactgcttatggacccgaacctgggtgatctatcca 181 |||||||||| | |||| |||||||| |||||| |||||||||||||||||||||||| Sbjct: 88282 agcgagtcttgctggggcaattgtcaccgcttataaacccgaacctgggtgatctatcca 88223 Query: 182 tgacca 187 |||||| Sbjct: 88222 tgacca 88217
>gb|AY958085.1| Staurastrum punctulatum chloroplast, complete genome Length = 157089 Score = 176 bits (89), Expect = 2e-41 Identities = 157/177 (88%), Gaps = 7/177 (3%) Strand = Plus / Plus Query: 8 ccaaccagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgagccggcg 67 |||| |||||||||| ||| | ||||||||||||||||||||||||||||||||||||| Sbjct: 654 ccaagcagtgggaggagaatggaatctctgaccgcgtgcctgttgaagaatgagccggcg 713 Query: 68 actcataggcagtggcttggttaagggaacg-gaacccaccggagccgtagcgaaagcga 126 ||| |||||||||||| ||||||||| || ||| || ||||||||||||||||||| Sbjct: 714 acttataggcagtggcctggttaagg---cgtgaagcc---ggagccgtagcgaaagcga 767 Query: 127 gtcttaatagggcgattgtcactgcttatggacccgaacctgggtgatctatccatg 183 ||||| |||||||| |||||||||||||||||||||||| |||||||||| ||||| Sbjct: 768 gtctttctagggcgaatgtcactgcttatggacccgaacccgggtgatctaaccatg 824
>gb|AF393586.1| Chara sp. CL-2002-2 small subunit ribosomal RNA (rrs) gene, partial sequence; tRNA-Ile (trnI(gau)) and tRNA-Ala (trnA(ugc)) genes, complete sequence; large subunit ribosomal RNA (rrl) and 5S ribosomal RNA (rrf) genes, complete sequence; and tRNA-Arg (trnR(acg)) gene, partial sequence; chloroplast genes for chloroplast products Length = 7651 Score = 176 bits (89), Expect = 2e-41 Identities = 138/153 (90%), Gaps = 1/153 (0%) Strand = Plus / Plus Query: 31 atctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggtta 90 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4606 atctttgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggtta 4665 Query: 91 agggaacggaacccaccggagccgtagcgaaagcgagtcttaatagggcgattgtcactg 150 |||||| | ||||||||||| |||||||||| |||||| |||||| |||||||||| Sbjct: 4666 agggaa-attatccaccggagccatagcgaaagcaagtctttttagggctattgtcactg 4724 Query: 151 cttatggacccgaacctgggtgatctatccatg 183 |||||||||||||| |||||||||| ||||| Sbjct: 4725 tctatggacccgaacccgggtgatctaaccatg 4757
>gb|AF393584.1| Chara sp. CL-2002-1 large subunit ribosomal RNA (rrl) gene, complete sequence; chloroplast gene for chloroplast product Length = 3257 Score = 176 bits (89), Expect = 2e-41 Identities = 138/153 (90%), Gaps = 1/153 (0%) Strand = Plus / Plus Query: 31 atctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggtta 90 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 573 atctttgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggtta 632 Query: 91 agggaacggaacccaccggagccgtagcgaaagcgagtcttaatagggcgattgtcactg 150 |||||| | ||||||||||| |||||||||| |||||| |||||| |||||||||| Sbjct: 633 agggaa-attatccaccggagccatagcgaaagcaagtctttttagggctattgtcactg 691 Query: 151 cttatggacccgaacctgggtgatctatccatg 183 |||||||||||||| |||||||||| ||||| Sbjct: 692 tctatggacccgaacccgggtgatctaaccatg 724
>gb|AF393579.1| Chara corallina large subunit ribosomal RNA (rrl) gene, complete sequence; chloroplast gene for chloroplast product Length = 3277 Score = 176 bits (89), Expect = 2e-41 Identities = 138/153 (90%), Gaps = 1/153 (0%) Strand = Plus / Plus Query: 31 atctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggtta 90 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 573 atctttgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggtta 632 Query: 91 agggaacggaacccaccggagccgtagcgaaagcgagtcttaatagggcgattgtcactg 150 |||||| | ||||||||||| |||||||||| |||||| |||||| |||||||||| Sbjct: 633 agggaa-attatccaccggagccatagcgaaagcaagtctttttagggctattgtcactg 691 Query: 151 cttatggacccgaacctgggtgatctatccatg 183 |||||||||||||| |||||||||| ||||| Sbjct: 692 tctatggacccgaacccgggtgatctaaccatg 724
>dbj|AK111158.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-176-H09, full insert sequence Length = 3614 Score = 174 bits (88), Expect = 6e-41 Identities = 94/96 (97%) Strand = Plus / Plus Query: 2 gagctcccaaccagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgag 61 |||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 490 gagctcccaagcagtgggaggggaaattgatctctgaccgcgtgcctgttgaagaatgag 549 Query: 62 ccggcgactcataggcagtggcttggttaagggaac 97 |||||||||||||||||||||||||||||||||||| Sbjct: 550 ccggcgactcataggcagtggcttggttaagggaac 585
>gb|AF355767.1| Bruguiera gymnorrhiza 23S ribosomal RNA gene, complete sequence; chloroplast gene for chloroplast product Length = 2867 Score = 168 bits (85), Expect = 4e-39 Identities = 112/121 (92%), Gaps = 5/121 (4%) Strand = Plus / Plus Query: 67 gactcataggcagtggcttggttaagggaacggaacccaccggagccgtagcgaaagcga 126 ||||||||| |||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 592 gactcatagtaagtggcttggttaagggaac-----ccaccggagccgtagcgaaagcga 646 Query: 127 gtcttaatagggcgattgtcactgcttatggacccgaacctgggtgatctatccatgacc 186 ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 647 gtcttcatagggcaattgtcactgcttatggacccgaacctgggtgatctatccatgacc 706 Query: 187 a 187 | Sbjct: 707 a 707
>gb|AF393594.1| Coleochaete scutata large subunit ribosomal RNA (rrl) gene, complete sequence; chloroplast gene for chloroplast product Length = 2886 Score = 167 bits (84), Expect = 2e-38 Identities = 136/152 (89%), Gaps = 6/152 (3%) Strand = Plus / Plus Query: 36 tgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaaggga 95 ||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| Sbjct: 567 tgaccgcgtgcctgttgaagaatgagccggcgacttataggcagtggcatggttaaggga 626 Query: 96 acggaacccaccggagccgtagcgaaagcgagtcttaatagggcgattgtcactgcttat 155 | |||||| |||| |||||||||| |||||| |||||||||||||||| |||| Sbjct: 627 at-----ccaccgaagccatagcgaaagcaagtctttc-agggcgattgtcactgtttat 680 Query: 156 ggacccgaacctgggtgatctatccatgacca 187 ||||||||||| |||||||||||||||||||| Sbjct: 681 ggacccgaacccgggtgatctatccatgacca 712
>gb|AF393593.1| Coleochaete orbicularis small subunit ribosomal RNA (rrs) gene, partial sequence; tRNA-Ile (trnI(gau)) and tRNA-Ala (trnA(ugc)) genes, complete sequence; large subunit ribosomal RNA (rrl) and 5S ribosomal RNA (rrf) genes, complete sequence; and tRNA-Arg (trnR(acg)) gene, partial sequence; chloroplast genes for chloroplast products Length = 6131 Score = 167 bits (84), Expect = 2e-38 Identities = 136/152 (89%), Gaps = 6/152 (3%) Strand = Plus / Plus Query: 36 tgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaaggga 95 ||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| Sbjct: 3601 tgaccgcgtgcctgttgaagaatgagccggcgacttataggcagtggcatggttaaggga 3660 Query: 96 acggaacccaccggagccgtagcgaaagcgagtcttaatagggcgattgtcactgcttat 155 | |||||| |||| |||||||||| |||||| |||||||||||||||| |||| Sbjct: 3661 at-----ccaccgaagccatagcgaaagcaagtctttc-agggcgattgtcactgtttat 3714 Query: 156 ggacccgaacctgggtgatctatccatgacca 187 ||||||||||| |||||||||||||||||||| Sbjct: 3715 ggacccgaacccgggtgatctatccatgacca 3746
>gb|AF393591.1| Coleochaete nitellarum large subunit ribosomal RNA (rrl) gene, complete sequence; chloroplast gene for chloroplast product Length = 2888 Score = 167 bits (84), Expect = 2e-38 Identities = 136/152 (89%), Gaps = 6/152 (3%) Strand = Plus / Plus Query: 36 tgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaaggga 95 ||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| Sbjct: 567 tgaccgcgtgcctgttgaagaatgagccggcgacttataggcagtggcatggttaaggga 626 Query: 96 acggaacccaccggagccgtagcgaaagcgagtcttaatagggcgattgtcactgcttat 155 | |||||| |||| |||||||||| |||||| |||||||||||||||| |||| Sbjct: 627 at-----ccaccgaagccatagcgaaagcaagtctttc-agggcgattgtcactgtttat 680 Query: 156 ggacccgaacctgggtgatctatccatgacca 187 ||||||||||| |||||||||||||||||||| Sbjct: 681 ggacccgaacccgggtgatctatccatgacca 712
>dbj|AK060204.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-001-H12, full insert sequence Length = 1872 Score = 167 bits (84), Expect = 2e-38 Identities = 87/88 (98%) Strand = Plus / Plus Query: 2 gagctcccaaccagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgag 61 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 403 gagctcccaagcagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgag 462 Query: 62 ccggcgactcataggcagtggcttggtt 89 |||||||||||||||||||||||||||| Sbjct: 463 ccggcgactcataggcagtggcttggtt 490
>gb|DQ160149.1| Taraxacum officinale To116-3 mRNA, partial sequence Length = 187 Score = 163 bits (82), Expect = 2e-37 Identities = 88/90 (97%) Strand = Plus / Plus Query: 98 ggaacccaccggagccgtagcgaaagcgagtcttaatagggcgattgtcactgcttatgg 157 |||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| Sbjct: 5 ggaacccaccggagccgtagcgaaagcgagtcttcatagggcaattgtcactgcttatgg 64 Query: 158 acccgaacctgggtgatctatccatgacca 187 |||||||||||||||||||||||||||||| Sbjct: 65 acccgaacctgggtgatctatccatgacca 94
>gb|AY330869.1| Cynomorium coccineum clone Cyno_0 23S large subunit ribosomal RNA gene, partial sequence; chloroplast gene for chloroplast product Length = 2754 Score = 163 bits (82), Expect = 2e-37 Identities = 138/155 (89%), Gaps = 5/155 (3%) Strand = Plus / Plus Query: 33 ctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaag 92 |||||||||||||||||||||||||||||||||||||||||| | |||||| |||||||| Sbjct: 579 ctctgaccgcgtgcctgttgaagaatgagccggcgactcataagtagtggcctggttaag 638 Query: 93 ggaacggaacccaccggagccgtagcgaaagcgagtcttaatagggcgattgtcactgct 152 | |||| ||||||||||| |||||||||| |||||| ||||||| | ||||| |||| Sbjct: 639 g----ggaa-ccaccggagccatagcgaaagcaagtcttcatagggcaaatgtcattgct 693 Query: 153 tatggacccgaacctgggtgatctatccatgacca 187 |||| |||||||| ||||||||||| ||||||||| Sbjct: 694 tatgtacccgaacttgggtgatctaaccatgacca 728
>gb|AF355765.1| Amaranthus hybridus 23S ribosomal RNA gene, complete sequence; chloroplast gene for chloroplast product Length = 2927 Score = 163 bits (82), Expect = 2e-37 Identities = 88/90 (97%) Strand = Plus / Plus Query: 98 ggaacccaccggagccgtagcgaaagcgagtcttaatagggcgattgtcactgcttatgg 157 |||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| Sbjct: 602 ggaacccaccggagccgtagcgaaagcgagtcttcatagggcaattgtcactgcttatgg 661 Query: 158 acccgaacctgggtgatctatccatgacca 187 |||||||||||||||||||||||||||||| Sbjct: 662 acccgaacctgggtgatctatccatgacca 691
>gb|AY305264.1| Cucumis melo clone M6-L12 orf124, orf118, tRNA-Met, and atp9 genes, complete sequence; and atp6 pseudogene, partial sequence; mitochondrial Length = 10403 Score = 157 bits (79), Expect = 1e-35 Identities = 121/135 (89%), Gaps = 5/135 (3%) Strand = Plus / Minus Query: 33 ctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaag 92 |||||||||||| ||| ||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 3249 ctctgaccgcgtacctattgaagaatgagccgacgactcataggcagtggcttggttaag 3190 Query: 93 ggaacggaacccaccggagccgtagcgaaagcgagtcttaatagggcgattgtcactgct 152 |||||||||||||||| ||||||||||||||| ||| |||| ||| |||||||| Sbjct: 3189 -----ggaacccaccggagccatagcgaaagcgagtcagaatggggcaattctcactgct 3135 Query: 153 tatggacccgaacct 167 ||||||||||||||| Sbjct: 3134 tatggacccgaacct 3120
>gb|AY330874.1| Cynomorium coccineum clone Cyno_5 23S large subunit ribosomal RNA gene, partial sequence; chloroplast gene for chloroplast product Length = 2737 Score = 155 bits (78), Expect = 6e-35 Identities = 137/155 (88%), Gaps = 5/155 (3%) Strand = Plus / Plus Query: 33 ctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaag 92 ||||||| |||| ||||||||||||||||||||||||||||| | ||||||||||||||| Sbjct: 566 ctctgactgcgttcctgttgaagaatgagccggcgactcataagtagtggcttggttaag 625 Query: 93 ggaacggaacccaccggagccgtagcgaaagcgagtcttaatagggcgattgtcactgct 152 | |||| ||||||||| | |||||||||| |||||| ||||||| | ||||| |||| Sbjct: 626 g----ggaa-ccaccggagtcatagcgaaagcaagtcttcatagggcaaatgtcattgct 680 Query: 153 tatggacccgaacctgggtgatctatccatgacca 187 ||||||||||||| ||||||||||| ||||||||| Sbjct: 681 tatggacccgaacttgggtgatctaaccatgacca 715
>gb|L49152.1|MEWCPRGOL Mesostigma viride large-subunit ribosomal RNA gene, partial sequence; chloroplast gene for chloroplast product Length = 2571 Score = 153 bits (77), Expect = 2e-34 Identities = 138/155 (89%), Gaps = 5/155 (3%) Strand = Plus / Plus Query: 29 tgatctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggt 88 |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| ||| Sbjct: 557 tgatctctgaccgcgtgcctattgaagaatgagccggcgacttataggcagtggctaggt 616 Query: 89 taagggaacggaacccaccggagccgtagcgaaagcgagtcttaatagggcgattgtcac 148 ||| || || || ||||||||| ||||||||||||||||||||||||||| |||||| Sbjct: 617 taa-ggtacaaaa---accggagccatagcgaaagcgagtcttaatagggcga-tgtcac 671 Query: 149 tgcttatggacccgaacctgggtgatctatccatg 183 || ||| |||||||||| |||||||||| ||||| Sbjct: 672 tgtctatagacccgaacccgggtgatctaaccatg 706
>gb|AF166114.1|AF166114 Mesostigma viride chloroplast DNA, complete genome Length = 118360 Score = 153 bits (77), Expect = 2e-34 Identities = 138/155 (89%), Gaps = 5/155 (3%) Strand = Plus / Minus Query: 29 tgatctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggt 88 |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| ||| Sbjct: 115105 tgatctctgaccgcgtgcctattgaagaatgagccggcgacttataggcagtggctaggt 115046 Query: 89 taagggaacggaacccaccggagccgtagcgaaagcgagtcttaatagggcgattgtcac 148 ||| || || || ||||||||| ||||||||||||||||||||||||||| |||||| Sbjct: 115045 taa-ggtacaaaa---accggagccatagcgaaagcgagtcttaatagggcga-tgtcac 114991 Query: 149 tgcttatggacccgaacctgggtgatctatccatg 183 || ||| |||||||||| |||||||||| ||||| Sbjct: 114990 tgtctatagacccgaacccgggtgatctaaccatg 114956 Score = 153 bits (77), Expect = 2e-34 Identities = 138/155 (89%), Gaps = 5/155 (3%) Strand = Plus / Plus Query: 29 tgatctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggt 88 |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| ||| Sbjct: 86883 tgatctctgaccgcgtgcctattgaagaatgagccggcgacttataggcagtggctaggt 86942 Query: 89 taagggaacggaacccaccggagccgtagcgaaagcgagtcttaatagggcgattgtcac 148 ||| || || || ||||||||| ||||||||||||||||||||||||||| |||||| Sbjct: 86943 taa-ggtacaaaa---accggagccatagcgaaagcgagtcttaatagggcga-tgtcac 86997 Query: 149 tgcttatggacccgaacctgggtgatctatccatg 183 || ||| |||||||||| |||||||||| ||||| Sbjct: 86998 tgtctatagacccgaacccgggtgatctaaccatg 87032
>gb|AY835431.1| Pseudendoclonium akinetum chloroplast, complete genome Length = 195867 Score = 141 bits (71), Expect = 9e-31 Identities = 130/148 (87%), Gaps = 5/148 (3%) Strand = Plus / Plus Query: 36 tgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaaggga 95 ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| | Sbjct: 192429 tgaccgcgtgcctgttgaagaatgagccggcgacttatagggagtggcttggttaaggta 192488 Query: 96 acggaacccaccggagccgtagcgaaagcgagtcttaatagggcgattgtcactgcttat 155 | || ||||||||| ||||||||| ||||| ||||||||| |||||||| ||||| Sbjct: 192489 a---aa--taccggagccaaagcgaaagcaagtctgaatagggcgcttgtcacttcttat 192543 Query: 156 ggacccgaacctgggtgatctatccatg 183 ||||||||||| | |||||||| ||||| Sbjct: 192544 ggacccgaacccgagtgatctaaccatg 192571 Score = 141 bits (71), Expect = 9e-31 Identities = 130/148 (87%), Gaps = 5/148 (3%) Strand = Plus / Minus Query: 36 tgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaaggga 95 ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| | Sbjct: 144353 tgaccgcgtgcctgttgaagaatgagccggcgacttatagggagtggcttggttaaggta 144294 Query: 96 acggaacccaccggagccgtagcgaaagcgagtcttaatagggcgattgtcactgcttat 155 | || ||||||||| ||||||||| ||||| ||||||||| |||||||| ||||| Sbjct: 144293 a---aa--taccggagccaaagcgaaagcaagtctgaatagggcgcttgtcacttcttat 144239 Query: 156 ggacccgaacctgggtgatctatccatg 183 ||||||||||| | |||||||| ||||| Sbjct: 144238 ggacccgaacccgagtgatctaaccatg 144211
>gb|AY958086.1| Zygnema circumcarinatum chloroplast, complete genome Length = 165372 Score = 133 bits (67), Expect = 2e-28 Identities = 131/153 (85%), Gaps = 7/153 (4%) Strand = Plus / Plus Query: 31 atctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggtta 90 |||| ||||||||||||||||||||||||||||||||||| ||| |||||||| |||||| Sbjct: 966 atctttgaccgcgtgcctgttgaagaatgagccggcgacttataagcagtggcctggtta 1025 Query: 91 agggaacggaacccaccggagccgtagcgaaagcgagtcttaatagggcgattgtcactg 150 |||| | |||| |||||||||||||||||||| | |||||| |||||||| Sbjct: 1026 agggta-------taccgaagccgtagcgaaagcgagtcattcaagggcgcatgtcactg 1078 Query: 151 cttatggacccgaacctgggtgatctatccatg 183 ||||||||||||||| |||||||||||||||| Sbjct: 1079 tttatggacccgaacccgggtgatctatccatg 1111
>gb|L42848.1|NEHCPRGOL Parietochloris pseudoalveolaris large subunit ribosomal RNA gene, partial sequence; chloroplast gene for chloroplast product Length = 2834 Score = 133 bits (67), Expect = 2e-28 Identities = 134/155 (86%), Gaps = 6/155 (3%) Strand = Plus / Plus Query: 35 ctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaaggg 94 |||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| Sbjct: 629 ctgaccgcgtgcctgttgaagaatgagccggcgacttataaaaagtggcttggttaagga 688 Query: 95 aacggaacccaccggagccgtagcgaaagcgagtcttaatagggcgatt--gtcactgct 152 ||| | |||||||| ||||||||| |||||||||||||||||| |||||| | Sbjct: 689 ----gaatcatccggagccagagcgaaagcaagtcttaatagggcgattttgtcactttt 744 Query: 153 tatggacccgaacctgggtgatctatccatgacca 187 |||||||||||||| |||||||||| ||||||||| Sbjct: 745 tatggacccgaacccgggtgatctaaccatgacca 779
>gb|AY330885.1| Cynomorium coccineum clone Cyno_16 23S large subunit ribosomal RNA gene, partial sequence; chloroplast gene for chloroplast product Length = 2716 Score = 131 bits (66), Expect = 8e-28 Identities = 134/155 (86%), Gaps = 5/155 (3%) Strand = Plus / Plus Query: 33 ctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaag 92 |||||||| |||||| ||||||||||||| |||||||||||| | |||||| |||||||| Sbjct: 554 ctctgaccacgtgcccgttgaagaatgagtcggcgactcataagtagtggcctggttaag 613 Query: 93 ggaacggaacccaccggagccgtagcgaaagcgagtcttaatagggcgattgtcactgct 152 | |||| ||||||||||| |||||||||| |||||| |||||| | ||||| |||| Sbjct: 614 g----ggaa-ccaccggagccatagcgaaagcaagtcttcatagggaaaatgtcattgct 668 Query: 153 tatggacccgaacctgggtgatctatccatgacca 187 | ||||||||||| ||||||||||| ||||||||| Sbjct: 669 tgtggacccgaacttgggtgatctaaccatgacca 703
>gb|AF525938.2| Casuarina equisetifolia 23S ribosomal RNA and 4.5S ribosomal RNA genes, complete sequence; chloroplast Length = 3069 Score = 131 bits (66), Expect = 8e-28 Identities = 107/118 (90%), Gaps = 7/118 (5%) Strand = Plus / Plus Query: 73 taggcagtggcttggttaa-gggaacggaacccaccggagccgtagcgaaagcgagtctt 131 ||||||||||||||||||| |||||| ||||||||| |||||||||||||||||||| Sbjct: 613 taggcagtggcttggttaaagggaac----cccaccggaaccgtagcgaaagcgagtctt 668 Query: 132 aatagggcgattgtcactgcttatggacccgaacc--tgggtgatctatccatgacca 187 ||||||| |||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 669 catagggcaattgtcactgcttatggacccgaaccctggggtgatctatccatgacca 726
>gb|L42993.1|URMCPRGOL Uronema belkae large subunit ribosomal RNA gene, complete sequence; chloroplast gene for chloroplast product Length = 2619 Score = 131 bits (66), Expect = 8e-28 Identities = 132/153 (86%), Gaps = 7/153 (4%) Strand = Plus / Plus Query: 34 tctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaagg 93 ||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| Sbjct: 552 tctgaccgcgtgcctgttgaagaatgagccggcgacttataggaagtggcttggttaagg 611 Query: 94 gaacggaacccaccggagccgtagcgaaagcgagtcttaatagggc---gattgtcactg 150 | | | |||||||| |||||||||||||||| |||||||| || |||||| Sbjct: 612 aa----attcatccggagccatagcgaaagcgagtctgaatagggcattaatggtcactt 667 Query: 151 cttatggacccgaacctgggtgatctatccatg 183 |||||||||||||||| || ||||||||||||| Sbjct: 668 cttatggacccgaaccgggatgatctatccatg 700
>gb|AF393603.1| Nitella sp. CL-2002 large subunit ribosomal RNA (rrl) gene, complete sequence; chloroplast gene for chloroplast product Length = 3349 Score = 129 bits (65), Expect = 3e-27 Identities = 132/153 (86%), Gaps = 1/153 (0%) Strand = Plus / Plus Query: 31 atctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggtta 90 |||| |||||||||||||||||||||||||||||||||||||||| ||||||| ||||| Sbjct: 568 atctttgaccgcgtgcctgttgaagaatgagccggcgactcatagatagtggctgggtta 627 Query: 91 agggaacggaacccaccggagccgtagcgaaagcgagtcttaatagggcgattgtcactg 150 |||||| | ||| |||||| |||||||||| |||||| ||||| |||||||||| Sbjct: 628 agggaa-tttatgcactggagccatagcgaaagcaagtcttttcagggctattgtcactg 686 Query: 151 cttatggacccgaacctgggtgatctatccatg 183 |||||||||||||| |||||||||| ||||| Sbjct: 687 tctatggacccgaacccgggtgatctaaccatg 719
>gb|AY008341.1| Trichosarcina mucosa large subunit ribosomal RNA (rrnL) gene, partial sequence; and rrnL and putative site-specific DNA endonuclease (rrnL) genes, complete cds; chloroplast genes for chloroplast products Length = 4502 Score = 125 bits (63), Expect = 5e-26 Identities = 128/148 (86%), Gaps = 5/148 (3%) Strand = Plus / Plus Query: 36 tgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaaggga 95 ||||||| ||||||||||||||||||||||||||| ||||| |||||||||||||||| | Sbjct: 598 tgaccgcatgcctgttgaagaatgagccggcgacttatagggagtggcttggttaaggca 657 Query: 96 acggaacccaccggagccgtagcgaaagcgagtcttaatagggcgattgtcactgcttat 155 | || |||||||| ||||||||| ||||| ||||||||| |||||||| |||| Sbjct: 658 a---aa--agccggagccaaagcgaaagcaagtctgaatagggcgcttgtcactttttat 712 Query: 156 ggacccgaacctgggtgatctatccatg 183 ||||||||||||| |||||||| ||||| Sbjct: 713 ggacccgaacctgagtgatctaaccatg 740
>dbj|AP003265.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0490D09 Length = 154430 Score = 117 bits (59), Expect = 1e-23 Identities = 62/63 (98%) Strand = Plus / Minus Query: 2 gagctcccaaccagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgag 61 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 107520 gagctcccaagcagtgggaggggaaagtgatctctgaccgcgtgcctgttgaagaatgag 107461 Query: 62 ccg 64 ||| Sbjct: 107460 ccg 107458
>gb|L42858.1|CRECPRGOLA Chlamydomonas gigantea large subunit ribosomal RNA gene, partial sequence; chloroplast gene for chloroplast product Length = 2888 Score = 115 bits (58), Expect = 5e-23 Identities = 133/155 (85%), Gaps = 6/155 (3%) Strand = Plus / Plus Query: 35 ctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaaggg 94 |||||||||||||| ||||||||||||||||||||| ||||| |||||||||||||| || Sbjct: 610 ctgaccgcgtgcctattgaagaatgagccggcgacttatagggagtggcttggttaa-gg 668 Query: 95 aacggaacccaccggagccgtagcgaaagcgagtcttaatagggcga--ttgtcactgct 152 | | || | |||||||| ||||||||||||||| || ||||||| |||||| | Sbjct: 669 agtgaaatc---cggagccggagcgaaagcgagtctgaagagggcgaacacgtcacttcc 725 Query: 153 tatggacccgaacctgggtgatctatccatgacca 187 |||||||||||||| |||||||||| ||||||||| Sbjct: 726 tatggacccgaacccgggtgatctaaccatgacca 760
>emb|AJ538560.1|NTA538560 Nicotiana tabacum cDNA-AFLP-fragment BC3-M22-001 Length = 501 Score = 115 bits (58), Expect = 5e-23 Identities = 58/58 (100%) Strand = Plus / Plus Query: 33 ctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggtta 90 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 440 ctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggtta 497
>gb|L42854.1|SFCCPRGOL Scourfieldia sp. M561 large subunit ribosomal RNA gene, complete sequence; chloroplast gene for chloroplast product Length = 2568 Score = 111 bits (56), Expect = 8e-22 Identities = 59/60 (98%) Strand = Plus / Plus Query: 34 tctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaagg 93 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 556 tctgaccgcgtgcctgttgaagaatgagccggcgacttataggcagtggcttggttaagg 615 Score = 93.7 bits (47), Expect = 2e-16 Identities = 74/83 (89%) Strand = Plus / Plus Query: 105 accggagccgtagcgaaagcgagtcttaatagggcgattgtcactgcttatggacccgaa 164 ||||||||| ||||||||| ||||| ||||||||| |||| ||||||||||||||||| Sbjct: 622 accggagccagagcgaaagcaagtctgaatagggcgtatgtccctgcttatggacccgaa 681 Query: 165 cctgggtgatctatccatgacca 187 || |||||||||| ||||||||| Sbjct: 682 cccgggtgatctaaccatgacca 704
>gb|AF393610.1| Spirogyra maxima large subunit ribosomal RNA (rrl) gene, partial sequence; chloroplast gene for chloroplast product Length = 2674 Score = 109 bits (55), Expect = 3e-21 Identities = 129/153 (84%), Gaps = 8/153 (5%) Strand = Plus / Plus Query: 31 atctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggtta 90 |||||||||||||||||||||||||||||||||||||||| ||| | |||||| |||||| Sbjct: 519 atctctgaccgcgtgcctgttgaagaatgagccggcgacttataagtagtggcctggtta 578 Query: 91 agggaacggaacccaccggagccgtagcgaaagcgagtcttaatagggcgattgtcactg 150 || ||| || ||||||||||||||||| |||| | || |||| |||||||| Sbjct: 579 agagaa-------tactggagccgtagcgaaagcaagtcat-atttggcgcatgtcactg 630 Query: 151 cttatggacccgaacctgggtgatctatccatg 183 |||| |||||||||| |||||||||||||||| Sbjct: 631 tttatagacccgaacccgggtgatctatccatg 663
>emb|AJ538655.1|NTA538655 Nicotiana tabacum cDNA-AFLP-fragment BC34-M2-001 Length = 512 Score = 109 bits (55), Expect = 3e-21 Identities = 55/55 (100%) Strand = Plus / Minus Query: 33 ctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttgg 87 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 55 ctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttgg 1
>gb|DQ160136.1| Taraxacum officinale To110-2 mRNA, partial sequence Length = 282 Score = 107 bits (54), Expect = 1e-20 Identities = 54/54 (100%) Strand = Plus / Plus Query: 33 ctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttg 86 |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 225 ctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttg 278
>gb|AF393596.1| Entransia fimbriata large subunit ribosomal RNA (rrl) gene, complete sequence; chloroplast gene for chloroplast product Length = 2840 Score = 105 bits (53), Expect = 5e-20 Identities = 56/57 (98%) Strand = Plus / Plus Query: 37 gaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaagg 93 |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 562 gaccgcgtgcctgttgaagaatgagccggcgacttataggcagtggcttggttaagg 618 Score = 50.1 bits (25), Expect = 0.002 Identities = 40/45 (88%) Strand = Plus / Plus Query: 143 tgtcactgcttatggacccgaacctgggtgatctatccatgacca 187 |||||||| ||||||||||||| | | |||||||| ||||||||| Sbjct: 664 tgtcactgtttatggacccgaatccgagtgatctaaccatgacca 708
>gb|L49157.1|STXCPRGOL Stigeoclonium helveticum chloroplast large-subunit ribosomal RNA (rrnL) gene Length = 6393 Score = 103 bits (52), Expect = 2e-19 Identities = 58/60 (96%) Strand = Plus / Plus Query: 34 tctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaagg 93 ||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| Sbjct: 591 tctgaccgcgtgcctgttgaagaatgagccggcgacttataggaagtggcttggttaagg 650 Score = 44.1 bits (22), Expect = 0.15 Identities = 31/34 (91%) Strand = Plus / Plus Query: 144 gtcactgcttatggacccgaacctgggtgatcta 177 |||||| |||||||||||||||| || ||||||| Sbjct: 722 gtcacttcttatggacccgaaccgggatgatcta 755
>gb|AF393601.1| Mesotaenium caldariorum large subunit ribosomal RNA (rrl) gene, partial sequence; chloroplast gene for chloroplast product Length = 2691 Score = 103 bits (52), Expect = 2e-19 Identities = 58/60 (96%) Strand = Plus / Plus Query: 34 tctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaagg 93 ||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| Sbjct: 528 tctgaccgcgtgcctgttgaagaatgagccggcgacttataggcagtggcctggttaagg 587 Score = 77.8 bits (39), Expect = 1e-11 Identities = 69/79 (87%) Strand = Plus / Plus Query: 105 accggagccgtagcgaaagcgagtcttaatagggcgattgtcactgcttatggacccgaa 164 |||| |||| |||||||||| |||| || | ||||| |||||||| ||||||||||||| Sbjct: 592 accgaagccatagcgaaagcaagtcataccaaggcgaatgtcactgtttatggacccgaa 651 Query: 165 cctgggtgatctatccatg 183 || |||||||||||||||| Sbjct: 652 cccgggtgatctatccatg 670
>gb|L49150.1|NCHCPRGOL Chlorosarcina brevispinosa chloroplast large subunit ribosomal RNA (rrnL) gene Length = 7514 Score = 101 bits (51), Expect = 7e-19 Identities = 127/152 (83%), Gaps = 4/152 (2%) Strand = Plus / Plus Query: 36 tgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaaggga 95 ||||||| ||||||||||||||||||||||||||| ||| |||||||||||||||| | Sbjct: 714 tgaccgcatgcctgttgaagaatgagccggcgacttataaagagtggcttggttaaggaa 773 Query: 96 acggaacccaccggagccgtagcgaaagcgagtcttaatagggcgattgtcactgcttat 155 | | || |||||| ||||||||| |||||||||||||| |||||| |||| Sbjct: 774 aaaaatcc----ggagccaaagcgaaagcaagtcttaatagggctcaggtcactctttat 829 Query: 156 ggacccgaacctgggtgatctatccatgacca 187 ||||||||||| |||||||||| ||||||||| Sbjct: 830 ggacccgaacccgggtgatctaaccatgacca 861
>gb|L43541.1|PDWCPRRNL Pedinomonas tuberculata chloroplast large-subunit ribosomal RNA (rrnL) gene Length = 3875 Score = 101 bits (51), Expect = 7e-19 Identities = 57/59 (96%) Strand = Plus / Plus Query: 33 ctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaa 91 |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| Sbjct: 575 ctctgaccgcgtgcctgttgaagaatgagccggcgacttataggaagtggcttggttaa 633 Score = 67.9 bits (34), Expect = 1e-08 Identities = 68/78 (87%), Gaps = 1/78 (1%) Strand = Plus / Plus Query: 110 agccgtagcgaaagcgagtcttaatagggcgattgtcactgcttatggacccgaacctgg 169 ||||||||||||||||||||| ||||||||| | |||| | ||| |||||||||| || Sbjct: 651 agccgtagcgaaagcgagtctgaatagggcg-tcgtcattttctatagacccgaacccgg 709 Query: 170 gtgatctatccatgacca 187 |||||||| ||||||||| Sbjct: 710 gtgatctaaccatgacca 727
>gb|L42849.1|PEDCPRGOL Pedinomonas minor large subunit ribosomal RNA gene, partial sequence; chloroplast gene for chloroplast product Length = 2632 Score = 101 bits (51), Expect = 7e-19 Identities = 57/59 (96%) Strand = Plus / Plus Query: 33 ctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaa 91 |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| Sbjct: 560 ctctgaccgcgtgcctgttgaagaatgagccggcgacttataggaagtggcttggttaa 618 Score = 75.8 bits (38), Expect = 4e-11 Identities = 66/74 (89%), Gaps = 1/74 (1%) Strand = Plus / Plus Query: 110 agccgtagcgaaagcgagtcttaatagggcgattgtcactgcttatggacccgaacctgg 169 ||||||||||||||||||||| |||||||||| |||||| |||| |||||||||| || Sbjct: 636 agccgtagcgaaagcgagtctgaatagggcga-cgtcactttttatagacccgaacccgg 694 Query: 170 gtgatctatccatg 183 |||||||| ||||| Sbjct: 695 gtgatctaaccatg 708
>gb|AF393605.1| Pedinomonas minor small subunit ribosomal RNA (rrs) gene, complete sequence; tRNA-Ile (trnI(gau)) and tRNA-Ala (trnA(ugc)) genes, complete sequence; and large subunit ribosomal RNA (rrl) and 5S ribosomal RNA (rrf) genes, complete sequence; chloroplast genes for chloroplast products Length = 5057 Score = 101 bits (51), Expect = 7e-19 Identities = 57/59 (96%) Strand = Plus / Plus Query: 33 ctctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaa 91 |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| Sbjct: 2442 ctctgaccgcgtgcctgttgaagaatgagccggcgacttataggaagtggcttggttaa 2500 Score = 75.8 bits (38), Expect = 4e-11 Identities = 66/74 (89%), Gaps = 1/74 (1%) Strand = Plus / Plus Query: 110 agccgtagcgaaagcgagtcttaatagggcgattgtcactgcttatggacccgaacctgg 169 ||||||||||||||||||||| |||||||||| |||||| |||| |||||||||| || Sbjct: 2518 agccgtagcgaaagcgagtctgaatagggcga-cgtcactttttatagacccgaacccgg 2576 Query: 170 gtgatctatccatg 183 |||||||| ||||| Sbjct: 2577 gtgatctaaccatg 2590
>gb|DQ291132.1| Oltmannsiellopsis viridis chloroplast, complete genome Length = 151933 Score = 99.6 bits (50), Expect = 3e-18 Identities = 74/82 (90%) Strand = Plus / Plus Query: 106 ccggagccgtagcgaaagcgagtcttaatagggcgattgtcactgcttatggacccgaac 165 |||||||| ||||||||| ||||| ||||||||| |||||||| ||||||||||||||| Sbjct: 137118 ccggagcctaagcgaaagcaagtctgaatagggcgtttgtcacttcttatggacccgaac 137177 Query: 166 ctgggtgatctatccatgacca 187 | |||||||||| ||||||||| Sbjct: 137178 ccgggtgatctaaccatgacca 137199 Score = 99.6 bits (50), Expect = 3e-18 Identities = 74/82 (90%) Strand = Plus / Minus Query: 106 ccggagccgtagcgaaagcgagtcttaatagggcgattgtcactgcttatggacccgaac 165 |||||||| ||||||||| ||||| ||||||||| |||||||| ||||||||||||||| Sbjct: 48426 ccggagcctaagcgaaagcaagtctgaatagggcgtttgtcacttcttatggacccgaac 48367 Query: 166 ctgggtgatctatccatgacca 187 | |||||||||| ||||||||| Sbjct: 48366 ccgggtgatctaaccatgacca 48345 Score = 83.8 bits (42), Expect = 2e-13 Identities = 54/58 (93%) Strand = Plus / Plus Query: 36 tgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaagg 93 ||||||||| ||||||||||||||||| ||||||| ||||| |||||||||||||||| Sbjct: 137053 tgaccgcgttcctgttgaagaatgagctggcgacttatagggagtggcttggttaagg 137110 Score = 83.8 bits (42), Expect = 2e-13 Identities = 54/58 (93%) Strand = Plus / Minus Query: 36 tgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaagg 93 ||||||||| ||||||||||||||||| ||||||| ||||| |||||||||||||||| Sbjct: 48491 tgaccgcgttcctgttgaagaatgagctggcgacttatagggagtggcttggttaagg 48434
>emb|AM084273.1| Paulinella chromatophora plastid 16S rRNA gene (partial), 23S rRNA gene (partial), tRNA-Ile gene, tRNA-Ala gene and ITS1, strain M 0880 Length = 4934 Score = 99.6 bits (50), Expect = 3e-18 Identities = 126/148 (85%), Gaps = 5/148 (3%) Strand = Plus / Plus Query: 36 tgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaaggga 95 |||||| |||||||||||||||||||||||||||| ||||| | |||| ||||||||| Sbjct: 2776 tgaccgtgtgcctgttgaagaatgagccggcgacttataggtactggca-ggttaaggg- 2833 Query: 96 acggaacccaccggagccgtagcgaaagcgagtcttaatagggcgattgtcactgcttat 155 |||| | |||||||| ||||||||||||||| ||||||||||| |||| | |||| Sbjct: 2834 --ggaaatc-ccggagccacagcgaaagcgagtctgaatagggcgatggtcagtatttat 2890 Query: 156 ggacccgaacctgggtgatctatccatg 183 |||||||||| |||||||||| ||||| Sbjct: 2891 agacccgaacccgggtgatctaaccatg 2918
>gb|L42837.1|CMKCPRGOL Chamaetrichon capsulatum large subunit ribosomal RNA (rrnL) gene, partial sequence; chloroplast gene for chloroplast product Length = 2610 Score = 97.6 bits (49), Expect = 1e-17 Identities = 55/57 (96%) Strand = Plus / Plus Query: 36 tgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaag 92 ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| Sbjct: 563 tgaccgcgtgcctgttgaagaatgagccggcgacttatagggagtggcttggttaag 619 Score = 81.8 bits (41), Expect = 7e-13 Identities = 68/77 (88%) Strand = Plus / Plus Query: 107 cggagccgtagcgaaagcgagtcttaatagggcgattgtcactgcttatggacccgaacc 166 ||||||| ||||||||| ||||| ||||||||| |||||||| |||||||||||||||| Sbjct: 629 cggagccaaagcgaaagcaagtctgaatagggcgtttgtcacttcttatggacccgaacc 688 Query: 167 tgggtgatctatccatg 183 | |||||||| ||||| Sbjct: 689 cgagtgatctaaccatg 705
>gb|L49153.1|MIXCPRGOL Microthamnion kuetzingianum large-subunit ribosomal RNA gene, partial sequence; chloroplast gene for chloroplast product Length = 2622 Score = 97.6 bits (49), Expect = 1e-17 Identities = 58/61 (95%) Strand = Plus / Plus Query: 34 tctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaagg 93 |||||||||||||||||||||||||||||||||||||| || | |||||||||||||||| Sbjct: 538 tctgaccgcgtgcctgttgaagaatgagccggcgactcctaagaagtggcttggttaagg 597 Query: 94 g 94 | Sbjct: 598 g 598
>gb|DQ174248.1| Phaeodactylum tricornutum 16S ribosomal RNA, tRNA-Ile, tRNA-Ala, 23S ribosomal RNA, and 5S ribosomal RNA genes, complete sequence; chloroplast Length = 5026 Score = 95.6 bits (48), Expect = 5e-17 Identities = 126/150 (84%), Gaps = 4/150 (2%) Strand = Plus / Plus Query: 34 tctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaagg 93 |||||| |||||||||||||||||||||||||||||| ||| | |||||| |||||||| Sbjct: 2303 tctgactgcgtgcctgttgaagaatgagccggcgacttataagtagtggc-aggttaagg 2361 Query: 94 gaacggaacccaccggagccgtagcgaaagcgagtcttaatagggcgattgtcactgctt 153 | || ||||||||| ||| ||||||||| || ||||||||| ||||||||| || Sbjct: 2362 ta---gagaataccggagccatagtgaaagcgagcctgaatagggcgtttgtcactggtt 2418 Query: 154 atggacccgaacctgggtgatctatccatg 183 || |||||||||| || ||||||| ||||| Sbjct: 2419 atagacccgaacccggatgatctaaccatg 2448
>gb|AF137379.1| Nephroselmis olivacea chloroplast DNA, complete genome Length = 200799 Score = 93.7 bits (47), Expect = 2e-16 Identities = 56/59 (94%) Strand = Plus / Minus Query: 35 ctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaagg 93 |||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| Sbjct: 170941 ctgaccgcgtgcctgttgaagaatgagccggcgacttctagggagtggcttggttaagg 170883 Score = 93.7 bits (47), Expect = 2e-16 Identities = 56/59 (94%) Strand = Plus / Plus Query: 35 ctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaagg 93 |||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| Sbjct: 121985 ctgaccgcgtgcctgttgaagaatgagccggcgacttctagggagtggcttggttaagg 122043 Score = 52.0 bits (26), Expect = 6e-04 Identities = 68/82 (82%) Strand = Plus / Minus Query: 106 ccggagccgtagcgaaagcgagtcttaatagggcgattgtcactgcttatggacccgaac 165 |||||||| ||||||||||||||| | ||||| ||||||| | || ||||||||| Sbjct: 170874 ccggagccagagcgaaagcgagtctgataagggcctgtgtcacttcctagagacccgaac 170815 Query: 166 ctgggtgatctatccatgacca 187 | |||||||||| ||||||||| Sbjct: 170814 ccgggtgatctaaccatgacca 170793 Score = 52.0 bits (26), Expect = 6e-04 Identities = 68/82 (82%) Strand = Plus / Plus Query: 106 ccggagccgtagcgaaagcgagtcttaatagggcgattgtcactgcttatggacccgaac 165 |||||||| ||||||||||||||| | ||||| ||||||| | || ||||||||| Sbjct: 122052 ccggagccagagcgaaagcgagtctgataagggcctgtgtcacttcctagagacccgaac 122111 Query: 166 ctgggtgatctatccatgacca 187 | |||||||||| ||||||||| Sbjct: 122112 ccgggtgatctaaccatgacca 122133
>gb|L49148.1|CRECPRGOLF Chlamydomonas mexicana chloroplast large subunit ribosomal RNA (rrnL) gene Length = 4181 Score = 93.7 bits (47), Expect = 2e-16 Identities = 56/59 (94%) Strand = Plus / Plus Query: 35 ctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaagg 93 |||||||||||||||||||||||||||||||||||| ||||| ||||||| |||||||| Sbjct: 582 ctgaccgcgtgcctgttgaagaatgagccggcgacttataggaagtggctgggttaagg 640 Score = 89.7 bits (45), Expect = 3e-15 Identities = 68/75 (90%), Gaps = 3/75 (4%) Strand = Plus / Plus Query: 116 agcgaaagcgagtcttaatagggcg---attgtcactgcttatggacccgaacctgggtg 172 ||||||||||||||||||||||||| || |||||| |||||||||||||||| ||||| Sbjct: 659 agcgaaagcgagtcttaatagggcgtaaatggtcacttcttatggacccgaacccgggtg 718 Query: 173 atctatccatgacca 187 |||||| |||||||| Sbjct: 719 atctattcatgacca 733
>gb|L43538.1|CRECPRRNLA Chlamydomonas peterfii chloroplast large subunit ribosomal RNA (rrnL) gene Length = 3498 Score = 93.7 bits (47), Expect = 2e-16 Identities = 56/59 (94%) Strand = Plus / Plus Query: 35 ctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaagg 93 |||||||||||||||||||||||||||||||||||| ||||| ||||||| |||||||| Sbjct: 622 ctgaccgcgtgcctgttgaagaatgagccggcgacttataggaagtggctgggttaagg 680 Score = 81.8 bits (41), Expect = 7e-13 Identities = 67/75 (89%), Gaps = 3/75 (4%) Strand = Plus / Plus Query: 116 agcgaaagcgagtcttaatagggcg---attgtcactgcttatggacccgaacctgggtg 172 ||||||||||||||| ||||||||| || |||||| |||||||||||||||| ||||| Sbjct: 699 agcgaaagcgagtctgaatagggcgtaaatggtcacttcttatggacccgaacccgggtg 758 Query: 173 atctatccatgacca 187 |||||| |||||||| Sbjct: 759 atctattcatgacca 773
>gb|L43503.1|CRECPRRNLL Chlamydomonas pallidostigmatica chloroplast large subunit ribosomal RNA (rrnL), site-specific DNA endonuclease I-CpaI, site-specific DNA endonuclease I-CpaIII, site-specific DNA endonuclease I-CpaIV, site-specific DNA endonuclease I-CpaV genes Length = 8217 Score = 93.7 bits (47), Expect = 2e-16 Identities = 56/59 (94%) Strand = Plus / Plus Query: 35 ctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaagg 93 |||||||||||||| ||||||||||||||||||||| ||||| |||||||||||||||| Sbjct: 700 ctgaccgcgtgcctattgaagaatgagccggcgacttatagggagtggcttggttaagg 758 Score = 69.9 bits (35), Expect = 3e-09 Identities = 73/85 (85%), Gaps = 3/85 (3%) Strand = Plus / Plus Query: 106 ccggagccgtagcgaaagcgagtcttaatagggcgatt---gtcactgcttatggacccg 162 ||||||||| ||||||||| ||||| |||||||| | | |||||| |||||||||||| Sbjct: 767 ccggagccgaagcgaaagcaagtctgaatagggcaaatatagtcacttcttatggacccg 826 Query: 163 aacctgggtgatctatccatgacca 187 |||| |||||||||| |||||||| Sbjct: 827 aacccgggtgatctaatcatgacca 851
>gb|L43352.1|CRECPRRNLC Chlamydomonas frankii chloroplast large subunit ribosomal RNA (rrnL) gene Length = 6750 Score = 93.7 bits (47), Expect = 2e-16 Identities = 56/59 (94%) Strand = Plus / Plus Query: 35 ctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaagg 93 |||||||||||||| ||||||||||||||||||||| ||||| |||||||||||||||| Sbjct: 571 ctgaccgcgtgcctattgaagaatgagccggcgacttatagggagtggcttggttaagg 629 Score = 56.0 bits (28), Expect = 4e-05 Identities = 40/44 (90%) Strand = Plus / Plus Query: 144 gtcactgcttatggacccgaacctgggtgatctatccatgacca 187 |||||| |||||||||||||||| |||||||||| |||||||| Sbjct: 683 gtcacttcttatggacccgaacccgggtgatctaatcatgacca 726
>gb|L43358.1|NEZCPRRNL Nephroselmis olivacea large subunit ribosomal RNA gene, complete sequence; chloroplast gene for chloroplast product Length = 2937 Score = 93.7 bits (47), Expect = 2e-16 Identities = 56/59 (94%) Strand = Plus / Plus Query: 35 ctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaagg 93 |||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| Sbjct: 576 ctgaccgcgtgcctgttgaagaatgagccggcgacttctagggagtggcttggttaagg 634 Score = 52.0 bits (26), Expect = 6e-04 Identities = 68/82 (82%) Strand = Plus / Plus Query: 106 ccggagccgtagcgaaagcgagtcttaatagggcgattgtcactgcttatggacccgaac 165 |||||||| ||||||||||||||| | ||||| ||||||| | || ||||||||| Sbjct: 643 ccggagccagagcgaaagcgagtctgataagggcctgtgtcacttcctagagacccgaac 702 Query: 166 ctgggtgatctatccatgacca 187 | |||||||||| ||||||||| Sbjct: 703 ccgggtgatctaaccatgacca 724
>emb|X68899.1|CHCPRRNX1 Chloroplast Chlamydomonas pallidostigmatica rrnL gene, exon 1 Length = 2219 Score = 93.7 bits (47), Expect = 2e-16 Identities = 56/59 (94%) Strand = Plus / Plus Query: 35 ctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaagg 93 |||||||||||||| ||||||||||||||||||||| ||||| |||||||||||||||| Sbjct: 700 ctgaccgcgtgcctattgaagaatgagccggcgacttatagggagtggcttggttaagg 758 Score = 69.9 bits (35), Expect = 3e-09 Identities = 73/85 (85%), Gaps = 3/85 (3%) Strand = Plus / Plus Query: 106 ccggagccgtagcgaaagcgagtcttaatagggcgatt---gtcactgcttatggacccg 162 ||||||||| ||||||||| ||||| |||||||| | | |||||| |||||||||||| Sbjct: 767 ccggagccgaagcgaaagcaagtctgaatagggcaaatatagtcacttcttatggacccg 826 Query: 163 aacctgggtgatctatccatgacca 187 |||| |||||||||| |||||||| Sbjct: 827 aacccgggtgatctaatcatgacca 851
>emb|X68887.1|CHCPRRNL1 Chloroplast Chlamydomonas peterfii rrnL gene, exon 1 Length = 2668 Score = 93.7 bits (47), Expect = 2e-16 Identities = 56/59 (94%) Strand = Plus / Plus Query: 35 ctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaagg 93 |||||||||||||||||||||||||||||||||||| ||||| ||||||| |||||||| Sbjct: 622 ctgaccgcgtgcctgttgaagaatgagccggcgacttataggaagtggctgggttaagg 680 Score = 81.8 bits (41), Expect = 7e-13 Identities = 67/75 (89%), Gaps = 3/75 (4%) Strand = Plus / Plus Query: 116 agcgaaagcgagtcttaatagggcg---attgtcactgcttatggacccgaacctgggtg 172 ||||||||||||||| ||||||||| || |||||| |||||||||||||||| ||||| Sbjct: 699 agcgaaagcgagtctgaatagggcgtaaatggtcacttcttatggacccgaacccgggtg 758 Query: 173 atctatccatgacca 187 |||||| |||||||| Sbjct: 759 atctattcatgacca 773
>emb|X68910.1|CHCMRRNL1 Chloroplast Chlamydomonas mexicana rrnL gene, exon 1 Length = 1965 Score = 93.7 bits (47), Expect = 2e-16 Identities = 56/59 (94%) Strand = Plus / Plus Query: 35 ctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaagg 93 |||||||||||||||||||||||||||||||||||| ||||| ||||||| |||||||| Sbjct: 582 ctgaccgcgtgcctgttgaagaatgagccggcgacttataggaagtggctgggttaagg 640 Score = 89.7 bits (45), Expect = 3e-15 Identities = 68/75 (90%), Gaps = 3/75 (4%) Strand = Plus / Plus Query: 116 agcgaaagcgagtcttaatagggcg---attgtcactgcttatggacccgaacctgggtg 172 ||||||||||||||||||||||||| || |||||| |||||||||||||||| ||||| Sbjct: 659 agcgaaagcgagtcttaatagggcgtaaatggtcacttcttatggacccgaacccgggtg 718 Query: 173 atctatccatgacca 187 |||||| |||||||| Sbjct: 719 atctattcatgacca 733
>emb|X68905.1|CHCFRRNL1 Chloroplast Chlamydomonas frankii rrnL gene, exon 1 Length = 1282 Score = 93.7 bits (47), Expect = 2e-16 Identities = 56/59 (94%) Strand = Plus / Plus Query: 35 ctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaagg 93 |||||||||||||| ||||||||||||||||||||| ||||| |||||||||||||||| Sbjct: 571 ctgaccgcgtgcctattgaagaatgagccggcgacttatagggagtggcttggttaagg 629 Score = 56.0 bits (28), Expect = 4e-05 Identities = 40/44 (90%) Strand = Plus / Plus Query: 144 gtcactgcttatggacccgaacctgggtgatctatccatgacca 187 |||||| |||||||||||||||| |||||||||| |||||||| Sbjct: 683 gtcacttcttatggacccgaacccgggtgatctaatcatgacca 726
>gb|L43542.1|TBXCPRRNL Trebouxia aggregata chloroplast large-subunit ribosomal RNA (rrnL) gene Length = 5398 Score = 91.7 bits (46), Expect = 7e-16 Identities = 55/58 (94%) Strand = Plus / Plus Query: 36 tgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaagg 93 ||||||||||||||||||||||||||||||||||| ||| | |||||||||||||||| Sbjct: 693 tgaccgcgtgcctgttgaagaatgagccggcgacttataaggagtggcttggttaagg 750 Score = 61.9 bits (31), Expect = 6e-07 Identities = 40/43 (93%) Strand = Plus / Plus Query: 141 attgtcactgcttatggacccgaacctgggtgatctatccatg 183 ||||||||| |||||||||||||||| |||||||||| ||||| Sbjct: 800 attgtcacttcttatggacccgaacccgggtgatctaaccatg 842
>gb|L43356.1|CRECPRRNLG Chlamydomonas zebra chloroplast large subunit ribosomal RNA (rrnL) gene Length = 4038 Score = 91.7 bits (46), Expect = 7e-16 Identities = 55/58 (94%) Strand = Plus / Plus Query: 36 tgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaagg 93 ||||||||||||||||||||||||||||||||||| ||||| ||||||| |||||||| Sbjct: 635 tgaccgcgtgcctgttgaagaatgagccggcgacttataggaagtggctgggttaagg 692 Score = 77.8 bits (39), Expect = 1e-11 Identities = 71/81 (87%), Gaps = 3/81 (3%) Strand = Plus / Plus Query: 106 ccggagccgtagcgaaagcgagtcttaatagggcg---attgtcactgcttatggacccg 162 |||||||| ||||||||||||||| ||||||||| || |||||| |||||||||||| Sbjct: 701 ccggagcccaagcgaaagcgagtctgaatagggcgtaaatggtcacttcttatggacccg 760 Query: 163 aacctgggtgatctatccatg 183 |||| ||||||||||| |||| Sbjct: 761 aacccgggtgatctattcatg 781
>tpg|BK000554.2| TPA: TPA_inf: Chlamydomonas reinhardtii chloroplast, complete genome Length = 203828 Score = 91.7 bits (46), Expect = 7e-16 Identities = 55/58 (94%) Strand = Plus / Minus Query: 36 tgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaagg 93 ||||||||||||||||||||||||||||||||||| ||||| ||||||| |||||||| Sbjct: 151806 tgaccgcgtgcctgttgaagaatgagccggcgacttatagggagtggctgggttaagg 151749 Score = 91.7 bits (46), Expect = 7e-16 Identities = 55/58 (94%) Strand = Plus / Plus Query: 36 tgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaagg 93 ||||||||||||||||||||||||||||||||||| ||||| ||||||| |||||||| Sbjct: 42397 tgaccgcgtgcctgttgaagaatgagccggcgacttatagggagtggctgggttaagg 42454 Score = 77.8 bits (39), Expect = 1e-11 Identities = 71/81 (87%), Gaps = 3/81 (3%) Strand = Plus / Minus Query: 106 ccggagccgtagcgaaagcgagtcttaatagggcg---attgtcactgcttatggacccg 162 |||||||| ||||||||||||||| ||||||||| || |||||| |||||||||||| Sbjct: 151740 ccggagcccaagcgaaagcgagtctgaatagggcgcaaatggtcacttcttatggacccg 151681 Query: 163 aacctgggtgatctatccatg 183 |||| ||||||||||| |||| Sbjct: 151680 aacccgggtgatctattcatg 151660 Score = 77.8 bits (39), Expect = 1e-11 Identities = 71/81 (87%), Gaps = 3/81 (3%) Strand = Plus / Plus Query: 106 ccggagccgtagcgaaagcgagtcttaatagggcg---attgtcactgcttatggacccg 162 |||||||| ||||||||||||||| ||||||||| || |||||| |||||||||||| Sbjct: 42463 ccggagcccaagcgaaagcgagtctgaatagggcgcaaatggtcacttcttatggacccg 42522 Query: 163 aacctgggtgatctatccatg 183 |||| ||||||||||| |||| Sbjct: 42523 aacccgggtgatctattcatg 42543
>emb|X68919.1|CHCZRRNL1 Chloroplast Chlamydomonas zebra rrnL gene, exon 1 Length = 2572 Score = 91.7 bits (46), Expect = 7e-16 Identities = 55/58 (94%) Strand = Plus / Plus Query: 36 tgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaagg 93 ||||||||||||||||||||||||||||||||||| ||||| ||||||| |||||||| Sbjct: 635 tgaccgcgtgcctgttgaagaatgagccggcgacttataggaagtggctgggttaagg 692 Score = 77.8 bits (39), Expect = 1e-11 Identities = 71/81 (87%), Gaps = 3/81 (3%) Strand = Plus / Plus Query: 106 ccggagccgtagcgaaagcgagtcttaatagggcg---attgtcactgcttatggacccg 162 |||||||| ||||||||||||||| ||||||||| || |||||| |||||||||||| Sbjct: 701 ccggagcccaagcgaaagcgagtctgaatagggcgtaaatggtcacttcttatggacccg 760 Query: 163 aacctgggtgatctatccatg 183 |||| ||||||||||| |||| Sbjct: 761 aacccgggtgatctattcatg 781
>emb|X16686.1|CHCR7S3S C. reinhardtii plastid DNA for 7S, 3S and 23S rRNA Length = 2603 Score = 91.7 bits (46), Expect = 7e-16 Identities = 55/58 (94%) Strand = Plus / Plus Query: 36 tgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaagg 93 ||||||||||||||||||||||||||||||||||| ||||| ||||||| |||||||| Sbjct: 569 tgaccgcgtgcctgttgaagaatgagccggcgacttatagggagtggctgggttaagg 626 Score = 77.8 bits (39), Expect = 1e-11 Identities = 71/81 (87%), Gaps = 3/81 (3%) Strand = Plus / Plus Query: 106 ccggagccgtagcgaaagcgagtcttaatagggcg---attgtcactgcttatggacccg 162 |||||||| ||||||||||||||| ||||||||| || |||||| |||||||||||| Sbjct: 635 ccggagcccaagcgaaagcgagtctgaatagggcgcaaatggtcacttcttatggacccg 694 Query: 163 aacctgggtgatctatccatg 183 |||| ||||||||||| |||| Sbjct: 695 aacccgggtgatctattcatg 715
>gb|J01398.1|CRECPRG23 c.reinhardtii (algae) chloroplast 3s, 7s & 23s(5') rrna gene Length = 814 Score = 91.7 bits (46), Expect = 7e-16 Identities = 55/58 (94%) Strand = Plus / Plus Query: 36 tgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaagg 93 ||||||||||||||||||||||||||||||||||| ||||| ||||||| |||||||| Sbjct: 654 tgaccgcgtgcctgttgaagaatgagccggcgacttatagggagtggctgggttaagg 711 Score = 77.8 bits (39), Expect = 1e-11 Identities = 71/81 (87%), Gaps = 3/81 (3%) Strand = Plus / Plus Query: 106 ccggagccgtagcgaaagcgagtcttaatagggcg---attgtcactgcttatggacccg 162 |||||||| ||||||||||||||| ||||||||| || |||||| |||||||||||| Sbjct: 720 ccggagcccaagcgaaagcgagtctgaatagggcgcaaatggtcacttcttatggacccg 779 Query: 163 aacctgggtgatctatccatg 183 |||| ||||||||||| |||| Sbjct: 780 aacccgggtgatctattcatg 800
>gb|L42845.1|FRICPRGOL Friedmannia israeliensis large subunit ribosomal RNA gene, partial sequence; chloroplast gene for chloroplast product Length = 2704 Score = 89.7 bits (45), Expect = 3e-15 Identities = 54/57 (94%) Strand = Plus / Plus Query: 35 ctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaa 91 |||||||||||||||||||||||||||||||||||| ||| | |||||||||||||| Sbjct: 571 ctgaccgcgtgcctgttgaagaatgagccggcgacttataaggagtggcttggttaa 627 Score = 56.0 bits (28), Expect = 4e-05 Identities = 37/40 (92%) Strand = Plus / Plus Query: 144 gtcactgcttatggacccgaacctgggtgatctatccatg 183 |||||| |||||||||||||||| |||||||||| ||||| Sbjct: 680 gtcacttcttatggacccgaacccgggtgatctaaccatg 719
>gb|L42861.1|KLBCPRGOL Klebsormidium flaccidum large subunit ribosomal RNA gene, complete sequence; chloroplast gene for chloroplast product Length = 2604 Score = 89.7 bits (45), Expect = 3e-15 Identities = 48/49 (97%) Strand = Plus / Plus Query: 35 ctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggc 83 ||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 551 ctgaccgcgtgcctgttgaagaatgagccggcgactcataggcggtggc 599 Score = 40.1 bits (20), Expect = 2.3 Identities = 59/72 (81%) Strand = Plus / Plus Query: 112 ccgtagcgaaagcgagtcttaatagggcgattgtcactgcttatggacccgaacctgggt 171 ||||||||||||| ||||| | ||||| ||||| | ||||||||||||||| | || Sbjct: 625 ccgtagcgaaagcaagtctgacaagggcccatgtcatcgtttatggacccgaacccgagt 684 Query: 172 gatctatccatg 183 |||||| ||||| Sbjct: 685 gatctaaccatg 696
>gb|AF393598.1| Klebsormidium flaccidum small subunit ribosomal RNA (rrs) gene, partial sequence; tRNA-Ile (trnI(gau)) and tRNA-Ala (trnA(ugc)) genes, complete sequence; large subunit ribosomal RNA (rrl) gene, complete sequence; and 5S ribosomal RNA (rrf) gene, partial sequence; chloroplast genes for chloroplast products Length = 7627 Score = 89.7 bits (45), Expect = 3e-15 Identities = 48/49 (97%) Strand = Plus / Plus Query: 35 ctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggc 83 ||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 5138 ctgaccgcgtgcctgttgaagaatgagccggcgactcataggcggtggc 5186 Score = 40.1 bits (20), Expect = 2.3 Identities = 59/72 (81%) Strand = Plus / Plus Query: 112 ccgtagcgaaagcgagtcttaatagggcgattgtcactgcttatggacccgaacctgggt 171 ||||||||||||| ||||| | ||||| ||||| | ||||||||||||||| | || Sbjct: 5212 ccgtagcgaaagcaagtctgacaagggcccatgtcatcgtttatggacccgaacccgagt 5271 Query: 172 gatctatccatg 183 |||||| ||||| Sbjct: 5272 gatctaaccatg 5283
>emb|X68893.1|CHCIRRNX1 Chloroplast Chlamydomonas indica rrnL gene, exon 1 Length = 810 Score = 89.7 bits (45), Expect = 3e-15 Identities = 72/80 (90%), Gaps = 2/80 (2%) Strand = Plus / Plus Query: 106 ccggagccgtagcgaaagcgagtcttaatagggcg--attgtcactgcttatggacccga 163 |||||||| |||||||||||||||||||||||||| | |||||| ||||||||||||| Sbjct: 696 ccggagccttagcgaaagcgagtcttaatagggcgacaaagtcacttcttatggacccga 755 Query: 164 acctgggtgatctatccatg 183 ||| ||||||||||| |||| Sbjct: 756 acccgggtgatctattcatg 775 Score = 69.9 bits (35), Expect = 3e-09 Identities = 53/59 (89%) Strand = Plus / Plus Query: 35 ctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaagg 93 ||||||||||||||||||||||||||| | |||||| ||||| |||||| |||||||| Sbjct: 629 ctgaccgcgtgcctgttgaagaatgagtctgcgacttatagggagtggcaaggttaagg 687
>emb|X68913.1|CHCMRRNX1 Chloroplast C.moewusii rrnL gene, exon 1 Length = 1119 Score = 89.7 bits (45), Expect = 3e-15 Identities = 72/80 (90%), Gaps = 2/80 (2%) Strand = Plus / Plus Query: 106 ccggagccgtagcgaaagcgagtcttaatagggcg--attgtcactgcttatggacccga 163 |||||||| |||||||||||||||||||||||||| | |||||| ||||||||||||| Sbjct: 773 ccggagccttagcgaaagcgagtcttaatagggcgacaaagtcacttcttatggacccga 832 Query: 164 acctgggtgatctatccatg 183 ||| ||||||||||| |||| Sbjct: 833 acccgggtgatctattcatg 852 Score = 69.9 bits (35), Expect = 3e-09 Identities = 53/59 (89%) Strand = Plus / Plus Query: 35 ctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaagg 93 ||||||||||||||||||||||||||| | |||||| ||||| |||||| |||||||| Sbjct: 706 ctgaccgcgtgcctgttgaagaatgagtctgcgacttatagggagtggcaaggttaagg 764
>emb|AM084275.1| Cyanoptyche gloeocystis cyanelle 16S rRNA gene (partial), 23S rRNA gene (partial), tRNA-Ile gene, tRNA-Ala gene and ITS1, strain SAG 34.90 Length = 4586 Score = 89.7 bits (45), Expect = 3e-15 Identities = 122/144 (84%), Gaps = 4/144 (2%) Strand = Plus / Plus Query: 41 gcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaagggaacgga 100 |||||||||||||||||||||||||||||| ||||| |||||| |||||||| || | Sbjct: 2385 gcgtgcctgttgaagaatgagccggcgacttataggtagtggc-aggttaaggtaatg-- 2441 Query: 101 acccaccggagccgtagcgaaagcgagtcttaatagggcgatt-gtcactgcttatggac 159 | || |||||| |||||||||||||| ||||||| ||| || |||||| |||| ||| Sbjct: 2442 atttactggagccatagcgaaagcgagttttaatagagcgtttagtcactatttatagac 2501 Query: 160 ccgaacctgggtgatctatccatg 183 ||||||| |||||||||| ||||| Sbjct: 2502 ccgaacccgggtgatctaaccatg 2525
>emb|Z17234.1|CHCERRNL Chloroplast Chlamydomonas eugametos rrnL gene Length = 8146 Score = 89.7 bits (45), Expect = 3e-15 Identities = 72/80 (90%), Gaps = 2/80 (2%) Strand = Plus / Plus Query: 106 ccggagccgtagcgaaagcgagtcttaatagggcg--attgtcactgcttatggacccga 163 |||||||| |||||||||||||||||||||||||| | |||||| ||||||||||||| Sbjct: 1445 ccggagccttagcgaaagcgagtcttaatagggcgacaaagtcacttcttatggacccga 1504 Query: 164 acctgggtgatctatccatg 183 ||| ||||||||||| |||| Sbjct: 1505 acccgggtgatctattcatg 1524 Score = 69.9 bits (35), Expect = 3e-09 Identities = 53/59 (89%) Strand = Plus / Plus Query: 35 ctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaagg 93 ||||||||||||||||||||||||||| | |||||| ||||| |||||| |||||||| Sbjct: 1378 ctgaccgcgtgcctgttgaagaatgagtctgcgacttatagggagtggcaaggttaagg 1436
>emb|Z15152.1|CHCPRRNL Chloroplast Chlamydomonas pitschmannii rrnL gene Length = 3017 Score = 89.7 bits (45), Expect = 3e-15 Identities = 72/80 (90%), Gaps = 2/80 (2%) Strand = Plus / Plus Query: 106 ccggagccgtagcgaaagcgagtcttaatagggcgat--tgtcactgcttatggacccga 163 |||||||| |||||||||| ||||||||||||||||| |||||| ||||||||||||| Sbjct: 718 ccggagccttagcgaaagcaagtcttaatagggcgataaagtcacttcttatggacccga 777 Query: 164 acctgggtgatctatccatg 183 ||| ||||||||||| |||| Sbjct: 778 acccgggtgatctattcatg 797 Score = 77.8 bits (39), Expect = 1e-11 Identities = 54/59 (91%) Strand = Plus / Plus Query: 35 ctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaagg 93 ||||||||||||||||||||||||||||| |||||| ||||| |||||| |||||||| Sbjct: 651 ctgaccgcgtgcctgttgaagaatgagcctgcgacttatagggagtggcaaggttaagg 709
>gb|M36158.1|CHLCPG C.ellipsoidea chloroplast 23S ribosomal RNA gene, complete sequence Length = 3359 Score = 89.7 bits (45), Expect = 3e-15 Identities = 54/57 (94%) Strand = Plus / Plus Query: 35 ctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaa 91 |||||||||||||||||||||||||||||||||||| ||||| |||||| ||||||| Sbjct: 680 ctgaccgcgtgcctgttgaagaatgagccggcgacttatagggagtggcgtggttaa 736
>gb|CP000110.1| Synechococcus sp. CC9605, complete genome Length = 2510659 Score = 87.7 bits (44), Expect = 1e-14 Identities = 68/76 (89%) Strand = Plus / Minus Query: 108 ggagccgtagcgaaagcgagtcttaatagggcgattgtcactgcttatggacccgaacct 167 |||||| |||||||||||||||| ||||||||| |||||| || |||| |||||||||| Sbjct: 2138158 ggagccatagcgaaagcgagtctgaatagggcgcttgtcagtgtttatagacccgaaccc 2138099 Query: 168 gggtgatctatccatg 183 |||||||||| ||||| Sbjct: 2138098 gggtgatctaaccatg 2138083 Score = 87.7 bits (44), Expect = 1e-14 Identities = 68/76 (89%) Strand = Plus / Plus Query: 108 ggagccgtagcgaaagcgagtcttaatagggcgattgtcactgcttatggacccgaacct 167 |||||| |||||||||||||||| ||||||||| |||||| || |||| |||||||||| Sbjct: 476702 ggagccatagcgaaagcgagtctgaatagggcgcttgtcagtgtttatagacccgaaccc 476761 Query: 168 gggtgatctatccatg 183 |||||||||| ||||| Sbjct: 476762 gggtgatctaaccatg 476777 Score = 71.9 bits (36), Expect = 7e-10 Identities = 45/48 (93%) Strand = Plus / Minus Query: 36 tgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggc 83 |||||| |||||||||||||||||||||||||||| ||||||| |||| Sbjct: 2138225 tgaccgtgtgcctgttgaagaatgagccggcgacttataggcactggc 2138178 Score = 71.9 bits (36), Expect = 7e-10 Identities = 45/48 (93%) Strand = Plus / Plus Query: 36 tgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggc 83 |||||| |||||||||||||||||||||||||||| ||||||| |||| Sbjct: 476635 tgaccgtgtgcctgttgaagaatgagccggcgacttataggcactggc 476682
>gb|CP000097.1| Synechococcus sp. CC9902, complete genome Length = 2234828 Score = 87.7 bits (44), Expect = 1e-14 Identities = 68/76 (89%) Strand = Plus / Minus Query: 108 ggagccgtagcgaaagcgagtcttaatagggcgattgtcactgcttatggacccgaacct 167 |||||| |||||||||||||||| ||||||||| |||||| || |||| |||||||||| Sbjct: 1775855 ggagccatagcgaaagcgagtctgaatagggcgtttgtcagtgtttatagacccgaaccc 1775796 Query: 168 gggtgatctatccatg 183 |||||||||| ||||| Sbjct: 1775795 gggtgatctaaccatg 1775780 Score = 87.7 bits (44), Expect = 1e-14 Identities = 68/76 (89%) Strand = Plus / Plus Query: 108 ggagccgtagcgaaagcgagtcttaatagggcgattgtcactgcttatggacccgaacct 167 |||||| |||||||||||||||| ||||||||| |||||| || |||| |||||||||| Sbjct: 376214 ggagccatagcgaaagcgagtctgaatagggcgtttgtcagtgtttatagacccgaaccc 376273 Query: 168 gggtgatctatccatg 183 |||||||||| ||||| Sbjct: 376274 gggtgatctaaccatg 376289 Score = 71.9 bits (36), Expect = 7e-10 Identities = 45/48 (93%) Strand = Plus / Minus Query: 36 tgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggc 83 |||||| |||||||||||||||||||||||||||| ||||||| |||| Sbjct: 1775922 tgaccgtgtgcctgttgaagaatgagccggcgacttataggcactggc 1775875 Score = 71.9 bits (36), Expect = 7e-10 Identities = 45/48 (93%) Strand = Plus / Plus Query: 36 tgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggc 83 |||||| |||||||||||||||||||||||||||| ||||||| |||| Sbjct: 376147 tgaccgtgtgcctgttgaagaatgagccggcgacttataggcactggc 376194
>gb|DQ396875.1| Scenedesmus obliquus strain UTEX 393 chloroplast, complete genome Length = 161452 Score = 87.7 bits (44), Expect = 1e-14 Identities = 56/60 (93%) Strand = Plus / Minus Query: 34 tctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaagg 93 ||||||||||||||||||||||||||||||||||||| ||||| |||||| |||||||| Sbjct: 155654 tctgaccgcgtgcctgttgaagaatgagccggcgacttataggaagtggcagggttaagg 155595 Score = 87.7 bits (44), Expect = 1e-14 Identities = 56/60 (93%) Strand = Plus / Plus Query: 34 tctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaagg 93 ||||||||||||||||||||||||||||||||||||| ||||| |||||| |||||||| Sbjct: 78238 tctgaccgcgtgcctgttgaagaatgagccggcgacttataggaagtggcagggttaagg 78297 Score = 77.8 bits (39), Expect = 1e-11 Identities = 66/74 (89%), Gaps = 2/74 (2%) Strand = Plus / Minus Query: 106 ccggagccgtagcgaaagcgagtcttaatagggcgatt--gtcactgcttatggacccga 163 |||||||| ||||||||||||||| ||||||||||| |||||| ||||||||||||| Sbjct: 155586 ccggagcccaagcgaaagcgagtctgaatagggcgatacagtcacttcttatggacccga 155527 Query: 164 acctgggtgatcta 177 |||||| ||||||| Sbjct: 155526 acctggatgatcta 155513 Score = 77.8 bits (39), Expect = 1e-11 Identities = 66/74 (89%), Gaps = 2/74 (2%) Strand = Plus / Plus Query: 106 ccggagccgtagcgaaagcgagtcttaatagggcgatt--gtcactgcttatggacccga 163 |||||||| ||||||||||||||| ||||||||||| |||||| ||||||||||||| Sbjct: 78306 ccggagcccaagcgaaagcgagtctgaatagggcgatacagtcacttcttatggacccga 78365 Query: 164 acctgggtgatcta 177 |||||| ||||||| Sbjct: 78366 acctggatgatcta 78379
>gb|AY033308.1| Uncultured Synechococcus sp. MB11E09 16S ribosomal RNA gene, partial sequence; tRNA-Ile and tRNA-Ala genes, complete sequence; and 23S ribosomal RNA gene, partial sequence Length = 4137 Score = 87.7 bits (44), Expect = 1e-14 Identities = 68/76 (89%) Strand = Plus / Plus Query: 108 ggagccgtagcgaaagcgagtcttaatagggcgattgtcactgcttatggacccgaacct 167 |||||| |||||||||||||||| ||||||||| |||||| || |||| |||||||||| Sbjct: 2876 ggagccatagcgaaagcgagtctgaatagggcgtttgtcagtgtttatagacccgaaccc 2935 Query: 168 gggtgatctatccatg 183 |||||||||| ||||| Sbjct: 2936 gggtgatctaaccatg 2951 Score = 71.9 bits (36), Expect = 7e-10 Identities = 45/48 (93%) Strand = Plus / Plus Query: 36 tgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggc 83 |||||| |||||||||||||||||||||||||||| ||||||| |||| Sbjct: 2809 tgaccgtgtgcctgttgaagaatgagccggcgacttataggcactggc 2856
>emb|BX572100.1| Prochlorococcus marinus MIT9313 complete genome; segment 6/7 Length = 348071 Score = 87.7 bits (44), Expect = 1e-14 Identities = 68/76 (89%) Strand = Plus / Minus Query: 108 ggagccgtagcgaaagcgagtcttaatagggcgattgtcactgcttatggacccgaacct 167 |||||| |||||||||||||||| ||||||||||| |||| || |||| |||||||||| Sbjct: 5974 ggagccatagcgaaagcgagtctgaatagggcgatcgtcagtgtttatagacccgaaccc 5915 Query: 168 gggtgatctatccatg 183 |||||||||| ||||| Sbjct: 5914 gggtgatctaaccatg 5899 Score = 71.9 bits (36), Expect = 7e-10 Identities = 45/48 (93%) Strand = Plus / Minus Query: 36 tgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggc 83 |||||| |||||||||||||||||||||||||||| ||||||| |||| Sbjct: 6041 tgaccgtgtgcctgttgaagaatgagccggcgacttataggcactggc 5994
>emb|BX572095.1| Prochlorococcus marinus MIT9313 complete genome; segment 1/7 Length = 349391 Score = 87.7 bits (44), Expect = 1e-14 Identities = 68/76 (89%) Strand = Plus / Plus Query: 108 ggagccgtagcgaaagcgagtcttaatagggcgattgtcactgcttatggacccgaacct 167 |||||| |||||||||||||||| ||||||||||| |||| || |||| |||||||||| Sbjct: 211798 ggagccatagcgaaagcgagtctgaatagggcgatcgtcagtgtttatagacccgaaccc 211857 Query: 168 gggtgatctatccatg 183 |||||||||| ||||| Sbjct: 211858 gggtgatctaaccatg 211873 Score = 71.9 bits (36), Expect = 7e-10 Identities = 45/48 (93%) Strand = Plus / Plus Query: 36 tgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggc 83 |||||| |||||||||||||||||||||||||||| ||||||| |||| Sbjct: 211731 tgaccgtgtgcctgttgaagaatgagccggcgacttataggcactggc 211778
>emb|BX569694.1| Synechococcus sp. WH8102 complete genome; segment 6/7 Length = 349122 Score = 87.7 bits (44), Expect = 1e-14 Identities = 68/76 (89%) Strand = Plus / Minus Query: 108 ggagccgtagcgaaagcgagtcttaatagggcgattgtcactgcttatggacccgaacct 167 |||||| |||||||||||||||| ||||||||| |||||| || |||| |||||||||| Sbjct: 339409 ggagccatagcgaaagcgagtctgaatagggcgcttgtcagtgtttatagacccgaaccc 339350 Query: 168 gggtgatctatccatg 183 |||||||||| ||||| Sbjct: 339349 gggtgatctaaccatg 339334 Score = 87.7 bits (44), Expect = 1e-14 Identities = 68/76 (89%) Strand = Plus / Minus Query: 108 ggagccgtagcgaaagcgagtcttaatagggcgattgtcactgcttatggacccgaacct 167 |||||| |||||||||||||||| ||||||||| |||||| || |||| |||||||||| Sbjct: 132469 ggagccatagcgaaagcgagtctgaatagggcgcttgtcagtgtttatagacccgaaccc 132410 Query: 168 gggtgatctatccatg 183 |||||||||| ||||| Sbjct: 132409 gggtgatctaaccatg 132394 Score = 71.9 bits (36), Expect = 7e-10 Identities = 45/48 (93%) Strand = Plus / Minus Query: 36 tgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggc 83 |||||| |||||||||||||||||||||||||||| ||||||| |||| Sbjct: 339476 tgaccgtgtgcctgttgaagaatgagccggcgacttataggcactggc 339429 Score = 71.9 bits (36), Expect = 7e-10 Identities = 45/48 (93%) Strand = Plus / Minus Query: 36 tgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggc 83 |||||| |||||||||||||||||||||||||||| ||||||| |||| Sbjct: 132536 tgaccgtgtgcctgttgaagaatgagccggcgacttataggcactggc 132489
>gb|L43353.1|CRECPRRNLD Chlamydomonas geitleri chloroplast large subunit ribosomal RNA (rrnL) gene Length = 4406 Score = 87.7 bits (44), Expect = 1e-14 Identities = 56/60 (93%) Strand = Plus / Plus Query: 34 tctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaagg 93 ||||||||||||||||||||||||||||||||||||| ||||| |||||| |||||||| Sbjct: 565 tctgaccgcgtgcctgttgaagaatgagccggcgacttataggaagtggcaaggttaagg 624 Score = 73.8 bits (37), Expect = 2e-10 Identities = 66/75 (88%), Gaps = 3/75 (4%) Strand = Plus / Plus Query: 106 ccggagccgtagcgaaagcgagtcttaatagggcgatt---gtcactgcttatggacccg 162 |||||||| ||||||||||||||||||||||||||| | |||||| |||||||||| Sbjct: 633 ccggagccttagcgaaagcgagtcttaatagggcgaataaagtcactttctatggacccg 692 Query: 163 aacctgggtgatcta 177 |||| |||||||||| Sbjct: 693 aacccgggtgatcta 707
>gb|DQ313008.1| Uncultured bacterium clone 3O7D 23S ribosomal RNA gene, partial sequence Length = 723 Score = 87.7 bits (44), Expect = 1e-14 Identities = 68/76 (89%) Strand = Plus / Plus Query: 108 ggagccgtagcgaaagcgagtcttaatagggcgattgtcactgcttatggacccgaacct 167 |||||| |||||||||||||||| ||||||||| |||||| || |||| |||||||||| Sbjct: 486 ggagccatagcgaaagcgagtctgaatagggcgtttgtcagtgtttatagacccgaaccc 545 Query: 168 gggtgatctatccatg 183 |||||||||| ||||| Sbjct: 546 gggtgatctaaccatg 561 Score = 71.9 bits (36), Expect = 7e-10 Identities = 45/48 (93%) Strand = Plus / Plus Query: 36 tgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggc 83 |||||| |||||||||||||||||||||||||||| ||||||| |||| Sbjct: 419 tgaccgtgtgcctgttgaagaatgagccggcgacttataggcactggc 466
>gb|DQ312972.1| Uncultured bacterium clone 3N4D 23S ribosomal RNA gene, partial sequence Length = 723 Score = 87.7 bits (44), Expect = 1e-14 Identities = 68/76 (89%) Strand = Plus / Plus Query: 108 ggagccgtagcgaaagcgagtcttaatagggcgattgtcactgcttatggacccgaacct 167 |||||| |||||||||||||||| ||||||||| |||||| || |||| |||||||||| Sbjct: 485 ggagccatagcgaaagcgagtctgaatagggcgtttgtcagtgtttatagacccgaaccc 544 Query: 168 gggtgatctatccatg 183 |||||||||| ||||| Sbjct: 545 gggtgatctaaccatg 560 Score = 71.9 bits (36), Expect = 7e-10 Identities = 45/48 (93%) Strand = Plus / Plus Query: 36 tgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggc 83 |||||| |||||||||||||||||||||||||||| ||||||| |||| Sbjct: 418 tgaccgtgtgcctgttgaagaatgagccggcgacttataggcactggc 465
>gb|DQ312949.1| Uncultured bacterium clone 3M6B 23S ribosomal RNA gene, partial sequence Length = 806 Score = 87.7 bits (44), Expect = 1e-14 Identities = 68/76 (89%) Strand = Plus / Plus Query: 108 ggagccgtagcgaaagcgagtcttaatagggcgattgtcactgcttatggacccgaacct 167 |||||| |||||||||||||||| ||||||||| |||||| || |||| |||||||||| Sbjct: 485 ggagccatagcgaaagcgagtctgaatagggcgtttgtcagtgtttatagacccgaaccc 544 Query: 168 gggtgatctatccatg 183 |||||||||| ||||| Sbjct: 545 gggtgatctaaccatg 560 Score = 71.9 bits (36), Expect = 7e-10 Identities = 45/48 (93%) Strand = Plus / Plus Query: 36 tgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggc 83 |||||| |||||||||||||||||||||||||||| ||||||| |||| Sbjct: 418 tgaccgtgtgcctgttgaagaatgagccggcgacttataggcactggc 465
>gb|DQ312883.1| Uncultured bacterium clone 3K4C 23S ribosomal RNA gene, partial sequence Length = 723 Score = 87.7 bits (44), Expect = 1e-14 Identities = 68/76 (89%) Strand = Plus / Plus Query: 108 ggagccgtagcgaaagcgagtcttaatagggcgattgtcactgcttatggacccgaacct 167 |||||| |||||||||||||||| ||||||||| |||||| || |||| |||||||||| Sbjct: 485 ggagccatagcgaaagcgagtctgaatagggcgtttgtcagtgtttatagacccgaaccc 544 Query: 168 gggtgatctatccatg 183 |||||||||| ||||| Sbjct: 545 gggtgatctaaccatg 560 Score = 71.9 bits (36), Expect = 7e-10 Identities = 45/48 (93%) Strand = Plus / Plus Query: 36 tgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggc 83 |||||| |||||||||||||||||||||||||||| ||||||| |||| Sbjct: 418 tgaccgtgtgcctgttgaagaatgagccggcgacttataggcactggc 465
>gb|DQ312666.1| Uncultured bacterium clone 3D4G 23S ribosomal RNA gene, partial sequence Length = 806 Score = 87.7 bits (44), Expect = 1e-14 Identities = 68/76 (89%) Strand = Plus / Plus Query: 108 ggagccgtagcgaaagcgagtcttaatagggcgattgtcactgcttatggacccgaacct 167 |||||| |||||||||||||||| ||||||||| |||||| || |||| |||||||||| Sbjct: 485 ggagccatagcgaaagcgagtctgaatagggcgtttgtcagtgtttatagacccgaaccc 544 Query: 168 gggtgatctatccatg 183 |||||||||| ||||| Sbjct: 545 gggtgatctaaccatg 560 Score = 71.9 bits (36), Expect = 7e-10 Identities = 45/48 (93%) Strand = Plus / Plus Query: 36 tgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggc 83 |||||| |||||||||||||||||||||||||||| ||||||| |||| Sbjct: 418 tgaccgtgtgcctgttgaagaatgagccggcgacttataggcactggc 465
>gb|DQ312633.1| Uncultured bacterium clone 3C6G 23S ribosomal RNA gene, partial sequence Length = 807 Score = 87.7 bits (44), Expect = 1e-14 Identities = 68/76 (89%) Strand = Plus / Plus Query: 108 ggagccgtagcgaaagcgagtcttaatagggcgattgtcactgcttatggacccgaacct 167 |||||| |||||||||||||||| ||||||||| |||||| || |||| |||||||||| Sbjct: 486 ggagccatagcgaaagcgagtctgaatagggcgtttgtcagtgtttatagacccgaaccc 545 Query: 168 gggtgatctatccatg 183 |||||||||| ||||| Sbjct: 546 gggtgatctaaccatg 561 Score = 71.9 bits (36), Expect = 7e-10 Identities = 45/48 (93%) Strand = Plus / Plus Query: 36 tgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggc 83 |||||| |||||||||||||||||||||||||||| ||||||| |||| Sbjct: 419 tgaccgtgtgcctgttgaagaatgagccggcgacttataggcactggc 466
>gb|DQ312593.1| Uncultured bacterium clone 3B8B 23S ribosomal RNA gene, partial sequence Length = 723 Score = 87.7 bits (44), Expect = 1e-14 Identities = 68/76 (89%) Strand = Plus / Plus Query: 108 ggagccgtagcgaaagcgagtcttaatagggcgattgtcactgcttatggacccgaacct 167 |||||| |||||||||||||||| ||||||||| |||||| || |||| |||||||||| Sbjct: 485 ggagccatagcgaaagcgagtctgaatagggcgtttgtcagtgtttatagacccgaaccc 544 Query: 168 gggtgatctatccatg 183 |||||||||| ||||| Sbjct: 545 gggtgatctaaccatg 560 Score = 71.9 bits (36), Expect = 7e-10 Identities = 45/48 (93%) Strand = Plus / Plus Query: 36 tgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggc 83 |||||| |||||||||||||||||||||||||||| ||||||| |||| Sbjct: 418 tgaccgtgtgcctgttgaagaatgagccggcgacttataggcactggc 465
>gb|DQ312550.1| Uncultured bacterium clone 3B11D 23S ribosomal RNA gene, partial sequence Length = 806 Score = 87.7 bits (44), Expect = 1e-14 Identities = 68/76 (89%) Strand = Plus / Plus Query: 108 ggagccgtagcgaaagcgagtcttaatagggcgattgtcactgcttatggacccgaacct 167 |||||| |||||||||||||||| ||||||||| |||||| || |||| |||||||||| Sbjct: 485 ggagccatagcgaaagcgagtctgaatagggcgtttgtcagtgtttatagacccgaaccc 544 Query: 168 gggtgatctatccatg 183 |||||||||| ||||| Sbjct: 545 gggtgatctaaccatg 560 Score = 71.9 bits (36), Expect = 7e-10 Identities = 45/48 (93%) Strand = Plus / Plus Query: 36 tgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggc 83 |||||| |||||||||||||||||||||||||||| ||||||| |||| Sbjct: 418 tgaccgtgtgcctgttgaagaatgagccggcgacttataggcactggc 465
>emb|X68891.1|CHCGRRNL1 Chloroplast Chlamydomonas geitleri rrnL gene, exon 1 Length = 1964 Score = 87.7 bits (44), Expect = 1e-14 Identities = 56/60 (93%) Strand = Plus / Plus Query: 34 tctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaagg 93 ||||||||||||||||||||||||||||||||||||| ||||| |||||| |||||||| Sbjct: 565 tctgaccgcgtgcctgttgaagaatgagccggcgacttataggaagtggcaaggttaagg 624 Score = 73.8 bits (37), Expect = 2e-10 Identities = 66/75 (88%), Gaps = 3/75 (4%) Strand = Plus / Plus Query: 106 ccggagccgtagcgaaagcgagtcttaatagggcgatt---gtcactgcttatggacccg 162 |||||||| ||||||||||||||||||||||||||| | |||||| |||||||||| Sbjct: 633 ccggagccttagcgaaagcgagtcttaatagggcgaataaagtcactttctatggacccg 692 Query: 163 aacctgggtgatcta 177 |||| |||||||||| Sbjct: 693 aacccgggtgatcta 707
>gb|AE017126.1| Prochlorococcus marinus subsp. marinus str. CCMP1375 complete genome Length = 1751080 Score = 87.7 bits (44), Expect = 1e-14 Identities = 68/76 (89%) Strand = Plus / Plus Query: 108 ggagccgtagcgaaagcgagtcttaatagggcgattgtcactgcttatggacccgaacct 167 |||||| |||||||||||||||||||||||||| |||||| || |||| |||||||||| Sbjct: 356101 ggagccatagcgaaagcgagtcttaatagggcgtttgtcagtgtttatagacccgaaccc 356160 Query: 168 gggtgatctatccatg 183 ||||||||| ||||| Sbjct: 356161 tggtgatctaaccatg 356176 Score = 71.9 bits (36), Expect = 7e-10 Identities = 45/48 (93%) Strand = Plus / Plus Query: 36 tgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggc 83 |||||| |||||||||||||||||||||||||||| ||||||| |||| Sbjct: 356034 tgaccgtgtgcctgttgaagaatgagccggcgacttataggcactggc 356081
>gb|AY389861.1| Uncultured chlorophyte large subunit ribosomal RNA gene, partial sequence; chloroplast Length = 750 Score = 85.7 bits (43), Expect = 4e-14 Identities = 70/78 (89%), Gaps = 2/78 (2%) Strand = Plus / Plus Query: 108 ggagccgtagcgaaagcgagtcttaatagggcga--ttgtcactgcttatggacccgaac 165 |||||| ||||||||||||||||||||||||||| |||||| ||||||||||||||| Sbjct: 255 ggagccttagcgaaagcgagtcttaatagggcgaacaagtcacttcttatggacccgaac 314 Query: 166 ctgggtgatctatccatg 183 | ||||||||||| |||| Sbjct: 315 ccgggtgatctattcatg 332 Score = 65.9 bits (33), Expect = 4e-08 Identities = 45/49 (91%) Strand = Plus / Plus Query: 35 ctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggc 83 ||||||||||||||||||||||||||| | |||||| ||||| |||||| Sbjct: 186 ctgaccgcgtgcctgttgaagaatgagtctgcgacttatagggagtggc 234
>gb|L43502.1|CRECPRRNLK Chlamydomonas komma chloroplast large subunit ribosomal RNA (rrnL), site-specific DNA endonuclease I-CkoI genes Length = 5105 Score = 85.7 bits (43), Expect = 4e-14 Identities = 71/79 (89%), Gaps = 1/79 (1%) Strand = Plus / Plus Query: 106 ccggagccgtagcgaaagcgagtcttaatagggcg-attgtcactgcttatggacccgaa 164 |||||||| ||||||||| ||||| ||||||||| ||||||||| |||||||||||||| Sbjct: 648 ccggagcccaagcgaaagcaagtctgaatagggcgtattgtcacttcttatggacccgaa 707 Query: 165 cctgggtgatctatccatg 183 || ||||||||||| |||| Sbjct: 708 cccgggtgatctattcatg 726 Score = 81.8 bits (41), Expect = 7e-13 Identities = 47/49 (95%) Strand = Plus / Plus Query: 36 tgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggct 84 ||||||||||||||||||||||||||||||||||| ||||| ||||||| Sbjct: 581 tgaccgcgtgcctgttgaagaatgagccggcgacttataggaagtggct 629
>gb|L43501.1|CRECPRRNLJ Chlamydomonas callosa chloroplast large subunit ribosomal RNA (rrnL), site-specific DNA endonuclease I-CcaI genes Length = 5999 Score = 85.7 bits (43), Expect = 4e-14 Identities = 75/85 (88%), Gaps = 3/85 (3%) Strand = Plus / Plus Query: 106 ccggagccgtagcgaaagcgagtcttaatagggcg---attgtcactgcttatggacccg 162 |||||||| ||||||||||||||| ||||||||| || |||||| |||||||||||| Sbjct: 644 ccggagcccaagcgaaagcgagtctgaatagggcgcaaatggtcacttcttatggacccg 703 Query: 163 aacctgggtgatctatccatgacca 187 |||| ||||||||||| |||||||| Sbjct: 704 aacccgggtgatctattcatgacca 728 Score = 83.8 bits (42), Expect = 2e-13 Identities = 54/58 (93%) Strand = Plus / Plus Query: 36 tgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaagg 93 ||||||||||||||||||||||||||||||||||| ||||| |||||| |||||||| Sbjct: 578 tgaccgcgtgcctgttgaagaatgagccggcgacttataggaagtggccgggttaagg 635
>gb|L43539.1|CRECPRRNL Chlamydomonas sp. (SAG 66.72) chloroplast large subunit ribosomal RNA (rrnL) gene Length = 5575 Score = 85.7 bits (43), Expect = 4e-14 Identities = 76/87 (87%), Gaps = 5/87 (5%) Strand = Plus / Plus Query: 106 ccggagccgtagcgaaagcgagtcttaatagggcgatt-----gtcactgcttatggacc 160 |||||||| ||||||||||||||||||||||||||||| |||||| | |||||||| Sbjct: 762 ccggagccttagcgaaagcgagtcttaatagggcgattaaagagtcacttcctatggacc 821 Query: 161 cgaacctgggtgatctatccatgacca 187 |||||| |||||||||| |||||||| Sbjct: 822 cgaacccgggtgatctaatcatgacca 848 Score = 77.8 bits (39), Expect = 1e-11 Identities = 54/59 (91%) Strand = Plus / Plus Query: 35 ctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaagg 93 ||||||||||||||||||||||||||||| |||||| ||||| |||||| |||||||| Sbjct: 695 ctgaccgcgtgcctgttgaagaatgagccagcgacttataggaagtggcaaggttaagg 753
>gb|L42852.1|PDFCPRGOL Pseudoscourfieldia marina large subunit ribosomal RNA (rrnL) gene, partial sequence; chloroplast gene for chloroplast product Length = 2571 Score = 85.7 bits (43), Expect = 4e-14 Identities = 55/59 (93%) Strand = Plus / Plus Query: 35 ctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaagg 93 |||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| Sbjct: 559 ctgaccgcgtgcctgttgaagaatgagccggcgacttttagcaagtggcttggttaagg 617 Score = 69.9 bits (35), Expect = 3e-09 Identities = 68/79 (86%) Strand = Plus / Plus Query: 105 accggagccgtagcgaaagcgagtcttaatagggcgattgtcactgcttatggacccgaa 164 ||||||||| ||||||||||||||| ||||||||| ||||||| ||| |||||||| Sbjct: 624 accggagccagagcgaaagcgagtctgaatagggcgcatgtcacttgttaaagacccgaa 683 Query: 165 cctgggtgatctatccatg 183 || |||||||||| ||||| Sbjct: 684 cccgggtgatctaaccatg 702
>emb|X68923.1|CHCSRRNX1 Chloroplast Chlamydomonas sp. 66.72 rrnL gene, exon 1 Length = 1218 Score = 85.7 bits (43), Expect = 4e-14 Identities = 76/87 (87%), Gaps = 5/87 (5%) Strand = Plus / Plus Query: 106 ccggagccgtagcgaaagcgagtcttaatagggcgatt-----gtcactgcttatggacc 160 |||||||| ||||||||||||||||||||||||||||| |||||| | |||||||| Sbjct: 762 ccggagccttagcgaaagcgagtcttaatagggcgattaaagagtcacttcctatggacc 821 Query: 161 cgaacctgggtgatctatccatgacca 187 |||||| |||||||||| |||||||| Sbjct: 822 cgaacccgggtgatctaatcatgacca 848 Score = 77.8 bits (39), Expect = 1e-11 Identities = 54/59 (91%) Strand = Plus / Plus Query: 35 ctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaagg 93 ||||||||||||||||||||||||||||| |||||| ||||| |||||| |||||||| Sbjct: 695 ctgaccgcgtgcctgttgaagaatgagccagcgacttataggaagtggcaaggttaagg 753
>emb|X68927.1|CHCKRRNL1 Chloroplast Chlamydomonas komma rrnL gene, exon 1 Length = 1285 Score = 85.7 bits (43), Expect = 4e-14 Identities = 71/79 (89%), Gaps = 1/79 (1%) Strand = Plus / Plus Query: 106 ccggagccgtagcgaaagcgagtcttaatagggcg-attgtcactgcttatggacccgaa 164 |||||||| ||||||||| ||||| ||||||||| ||||||||| |||||||||||||| Sbjct: 648 ccggagcccaagcgaaagcaagtctgaatagggcgtattgtcacttcttatggacccgaa 707 Query: 165 cctgggtgatctatccatg 183 || ||||||||||| |||| Sbjct: 708 cccgggtgatctattcatg 726 Score = 81.8 bits (41), Expect = 7e-13 Identities = 47/49 (95%) Strand = Plus / Plus Query: 36 tgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggct 84 ||||||||||||||||||||||||||||||||||| ||||| ||||||| Sbjct: 581 tgaccgcgtgcctgttgaagaatgagccggcgacttataggaagtggct 629
>emb|Z15151.1|CHCGRRNL Chloroplast Chlamydomonas gelatinosa rrnL gene Length = 2904 Score = 85.7 bits (43), Expect = 4e-14 Identities = 55/59 (93%) Strand = Plus / Plus Query: 36 tgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaaggg 94 |||| |||||||||||||||||||||||||||||| ||||| ||||||| ||||||||| Sbjct: 586 tgactgcgtgcctgttgaagaatgagccggcgacttataggaagtggctaggttaaggg 644 Score = 81.8 bits (41), Expect = 7e-13 Identities = 71/80 (88%), Gaps = 2/80 (2%) Strand = Plus / Plus Query: 110 agccgtagcgaaagcgagtcttaatagggcgatt--gtcactgcttatggacccgaacct 167 |||| |||||||||||||||| ||||||||| | |||||| |||||||||||||||| Sbjct: 656 agccatagcgaaagcgagtctgaatagggcgtcttcgtcacttcttatggacccgaaccc 715 Query: 168 gggtgatctatccatgacca 187 |||||||||| ||||||||| Sbjct: 716 gggtgatctaaccatgacca 735
>gb|L43355.1|CRECPRRNLF Chlamydomonas pseudopertusa chloroplast large subunit ribosomal RNA (rrnL) gene Length = 3397 Score = 83.8 bits (42), Expect = 2e-13 Identities = 54/58 (93%) Strand = Plus / Plus Query: 36 tgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaagg 93 ||||||||||||||||||||||||||||||||||| ||||| |||||| |||||||| Sbjct: 750 tgaccgcgtgcctgttgaagaatgagccggcgacttataggaagtggcaaggttaagg 807 Score = 69.9 bits (35), Expect = 3e-09 Identities = 74/87 (85%), Gaps = 5/87 (5%) Strand = Plus / Plus Query: 106 ccggagccgtagcgaaagcgagtcttaatagggcgatt-----gtcactgcttatggacc 160 |||||||| ||||||||||||||||||||||||||| | |||||| |||||||| Sbjct: 816 ccggagccttagcgaaagcgagtcttaatagggcgaataaagagtcactttctatggacc 875 Query: 161 cgaacctgggtgatctatccatgacca 187 |||||| |||||||||| |||||||| Sbjct: 876 cgaacccgggtgatctaatcatgacca 902
>gb|L42846.1|GLZCPRGOL Gloeotilopsis sterilis large subunit ribosomal RNA gene, partial sequence; chloroplast Length = 2661 Score = 83.8 bits (42), Expect = 2e-13 Identities = 54/58 (93%) Strand = Plus / Plus Query: 36 tgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaagg 93 ||||||||| ||||||||||||||||||||||||| |||| |||||||||||||||| Sbjct: 566 tgaccgcgttcctgttgaagaatgagccggcgacttatagaaagtggcttggttaagg 623 Score = 73.8 bits (37), Expect = 2e-10 Identities = 73/84 (86%), Gaps = 2/84 (2%) Strand = Plus / Plus Query: 106 ccggagccgtagcgaaagcgagtcttaatagggcgatt--gtcactgcttatggacccga 163 |||||||| ||||||||||||||| |||||||| || |||||| |||||||||||| Sbjct: 632 ccggagccaaagcgaaagcgagtctgaatagggcacttttgtcactttttatggacccga 691 Query: 164 acctgggtgatctatccatgacca 187 ||| |||||||||| ||||||||| Sbjct: 692 acccgggtgatctaaccatgacca 715
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 83.8 bits (42), Expect = 2e-13 Identities = 42/42 (100%) Strand = Plus / Minus Query: 21 ggggaaagtgatctctgaccgcgtgcctgttgaagaatgagc 62 |||||||||||||||||||||||||||||||||||||||||| Sbjct: 12182494 ggggaaagtgatctctgaccgcgtgcctgttgaagaatgagc 12182453
>gb|AF393599.1| Klebsormidium subtilissimum large subunit ribosomal RNA (rrl) gene, complete sequence; chloroplast gene for chloroplast product Length = 2901 Score = 83.8 bits (42), Expect = 2e-13 Identities = 42/42 (100%) Strand = Plus / Plus Query: 35 ctgaccgcgtgcctgttgaagaatgagccggcgactcatagg 76 |||||||||||||||||||||||||||||||||||||||||| Sbjct: 564 ctgaccgcgtgcctgttgaagaatgagccggcgactcatagg 605 Score = 40.1 bits (20), Expect = 2.3 Identities = 29/32 (90%) Strand = Plus / Plus Query: 152 ttatggacccgaacctgggtgatctatccatg 183 ||||||||||||||| | |||||||| ||||| Sbjct: 678 ttatggacccgaacccgagtgatctaaccatg 709
>dbj|BA000039.2| Thermosynechococcus elongatus BP-1 DNA, complete genome Length = 2593857 Score = 83.8 bits (42), Expect = 2e-13 Identities = 66/74 (89%) Strand = Plus / Minus Query: 110 agccgtagcgaaagcgagtcttaatagggcgattgtcactgcttatggacccgaacctgg 169 |||| |||||||||||||||| ||||||||| |||||| | ||||| |||||||||| || Sbjct: 2334184 agccatagcgaaagcgagtctgaatagggcgtttgtcagtacttatagacccgaacccgg 2334125 Query: 170 gtgatctatccatg 183 |||||||| ||||| Sbjct: 2334124 gtgatctaaccatg 2334111 Score = 65.9 bits (33), Expect = 4e-08 Identities = 39/41 (95%) Strand = Plus / Minus Query: 36 tgaccgcgtgcctgttgaagaatgagccggcgactcatagg 76 |||| |||||||||||||||||||||||||||||| ||||| Sbjct: 2334253 tgacggcgtgcctgttgaagaatgagccggcgacttatagg 2334213
>dbj|AP005607.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ9003_D08 Length = 88854 Score = 83.8 bits (42), Expect = 2e-13 Identities = 42/42 (100%) Strand = Plus / Minus Query: 21 ggggaaagtgatctctgaccgcgtgcctgttgaagaatgagc 62 |||||||||||||||||||||||||||||||||||||||||| Sbjct: 5955 ggggaaagtgatctctgaccgcgtgcctgttgaagaatgagc 5914
>gb|AY033297.1| Uncultured Synechococcus sp. MB11A04 16S ribosomal RNA gene, partial sequence; tRNA-Ile and tRNA-Ala genes, complete sequence; and 23S ribosomal RNA gene, partial sequence Length = 4141 Score = 81.8 bits (41), Expect = 7e-13 Identities = 69/77 (89%), Gaps = 1/77 (1%) Strand = Plus / Plus Query: 108 ggagccgtagcgaaagcgagtctt-aatagggcgattgtcactgcttatggacccgaacc 166 |||||| ||||||||||||||||| ||||||||| |||||| || |||| |||||||||| Sbjct: 2872 ggagccatagcgaaagcgagtcttgaatagggcgtttgtcagtgtttatagacccgaacc 2931 Query: 167 tgggtgatctatccatg 183 |||||||||| ||||| Sbjct: 2932 cgggtgatctaaccatg 2948 Score = 61.9 bits (31), Expect = 6e-07 Identities = 34/35 (97%) Strand = Plus / Plus Query: 36 tgaccgcgtgcctgttgaagaatgagccggcgact 70 |||||| |||||||||||||||||||||||||||| Sbjct: 2804 tgaccgtgtgcctgttgaagaatgagccggcgact 2838
>gb|AY584525.1| Plectonema terebrans strain CCAP 1463-4 23S ribosomal RNA gene, partial sequence Length = 2440 Score = 81.8 bits (41), Expect = 7e-13 Identities = 119/143 (83%), Gaps = 4/143 (2%) Strand = Plus / Plus Query: 41 gcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaagggaacgga 100 |||||||||||||||||||||||||||||| ||||||| |||| ||||||||| | | Sbjct: 188 gcgtgcctgttgaagaatgagccggcgacttataggcactggc-aggttaaggggaataa 246 Query: 101 acccaccggagccgtagcgaaagcgagtcttaatagggcgattgtcactgcttatggacc 160 || ||| |||| || |||| ||||||| ||||||||| | |||| || |||| |||| Sbjct: 247 ac---ccgaagccaaagggaaaccgagtctgaatagggcgttagtcagtgtttatagacc 303 Query: 161 cgaacctgggtgatctatccatg 183 |||||| |||||||||| ||||| Sbjct: 304 cgaacccgggtgatctaaccatg 326
>gb|AY584519.1| Nostoc punctiforme strain ATCC 29133 23S ribosomal RNA gene, partial sequence Length = 2446 Score = 81.8 bits (41), Expect = 7e-13 Identities = 44/45 (97%) Strand = Plus / Plus Query: 34 tctgaccgcgtgcctgttgaagaatgagccggcgactcataggca 78 ||||||||||||||||||||||||||||||||||||| ||||||| Sbjct: 182 tctgaccgcgtgcctgttgaagaatgagccggcgacttataggca 226
>gb|L49149.1|CRECPRGOLG Chlamydomonas monadina chloroplast large subunit ribosomal RNA (rrnL), site-specific DNA endonuclease I-CmoI genes Length = 8176 Score = 81.8 bits (41), Expect = 7e-13 Identities = 47/49 (95%) Strand = Plus / Plus Query: 35 ctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggc 83 |||||||||||||||||||||||||||||||||||| ||||| |||||| Sbjct: 745 ctgaccgcgtgcctgttgaagaatgagccggcgacttataggaagtggc 793 Score = 56.0 bits (28), Expect = 4e-05 Identities = 63/72 (87%), Gaps = 2/72 (2%) Strand = Plus / Plus Query: 106 ccggagccgtagcgaaagcgagtcttaatagggcgattgtcactgcttatggacccgaac 165 |||||||| |||||||||||||||||| | ||| | |||||| ||||||||||||||| Sbjct: 820 ccggagcctaagcgaaagcgagtcttaa-atggct-tcgtcacttcttatggacccgaac 877 Query: 166 ctgggtgatcta 177 | |||||||||| Sbjct: 878 ccgggtgatcta 889
>gb|L42853.1|PYTCPRGOL Pyramimonas parkeae large subunit ribosomal RNA gene, partial sequence; chloroplast gene for chloroplast product Length = 2665 Score = 81.8 bits (41), Expect = 7e-13 Identities = 47/49 (95%) Strand = Plus / Plus Query: 35 ctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggc 83 |||||||||||||||||||||||||||||||||||| ||||||| |||| Sbjct: 580 ctgaccgcgtgcctgttgaagaatgagccggcgacttataggcactggc 628 Score = 71.9 bits (36), Expect = 7e-10 Identities = 66/76 (86%) Strand = Plus / Plus Query: 108 ggagccgtagcgaaagcgagtcttaatagggcgattgtcactgcttatggacccgaacct 167 |||||| |||||||||||||||| ||||||||| |||| || |||||||||||||| Sbjct: 650 ggagccatagcgaaagcgagtctgaatagggcgtatgtccgtgtctatggacccgaaccc 709 Query: 168 gggtgatctatccatg 183 |||||||||| ||||| Sbjct: 710 gggtgatctaaccatg 725
>gb|AF393608.1| Pyramimonas parkeae small subunit ribosomal RNA (rrs) gene, partial sequence; tRNA-Ile (trnI(gau)) and tRNA-Ala (trnA(ugc)) genes, complete sequence; and large subunit ribosomal RNA (rrl) gene, partial sequence; chloroplast genes for chloroplast products Length = 4577 Score = 81.8 bits (41), Expect = 7e-13 Identities = 47/49 (95%) Strand = Plus / Plus Query: 35 ctgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggc 83 |||||||||||||||||||||||||||||||||||| ||||||| |||| Sbjct: 2349 ctgaccgcgtgcctgttgaagaatgagccggcgacttataggcactggc 2397 Score = 71.9 bits (36), Expect = 7e-10 Identities = 66/76 (86%) Strand = Plus / Plus Query: 108 ggagccgtagcgaaagcgagtcttaatagggcgattgtcactgcttatggacccgaacct 167 |||||| |||||||||||||||| ||||||||| |||| || |||||||||||||| Sbjct: 2419 ggagccatagcgaaagcgagtctgaatagggcgtatgtccgtgtctatggacccgaaccc 2478 Query: 168 gggtgatctatccatg 183 |||||||||| ||||| Sbjct: 2479 gggtgatctaaccatg 2494
>gb|CP000111.1| Prochlorococcus marinus str. MIT 9312, complete genome Length = 1709204 Score = 79.8 bits (40), Expect = 3e-12 Identities = 61/68 (89%) Strand = Plus / Plus Query: 116 agcgaaagcgagtcttaatagggcgattgtcactgcttatggacccgaacctgggtgatc 175 ||||||||||||||||||||||||| |||||| || |||| |||||||||| ||||||| Sbjct: 320233 agcgaaagcgagtcttaatagggcgtttgtcagtgtttatagacccgaaccctggtgatc 320292 Query: 176 tatccatg 183 || ||||| Sbjct: 320293 taaccatg 320300 Score = 71.9 bits (36), Expect = 7e-10 Identities = 45/48 (93%) Strand = Plus / Plus Query: 36 tgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggc 83 |||||| |||||||||||||||||||||||||||| ||||||| |||| Sbjct: 320158 tgaccgtgtgcctgttgaagaatgagccggcgacttataggcactggc 320205
>gb|AY033310.1| Uncultured Prochlorococcus sp. MB11F02 16S ribosomal RNA gene, partial sequence; tRNA-Ile and tRNA-Ala genes, complete sequence; and 23S ribosomal RNA gene, partial sequence Length = 3916 Score = 79.8 bits (40), Expect = 3e-12 Identities = 61/68 (89%) Strand = Plus / Plus Query: 116 agcgaaagcgagtcttaatagggcgattgtcactgcttatggacccgaacctgggtgatc 175 ||||||||||||||||||||||||| |||||| || |||| |||||||||| ||||||| Sbjct: 2656 agcgaaagcgagtcttaatagggcgtttgtcagtgtttatagacccgaaccctggtgatc 2715 Query: 176 tatccatg 183 || ||||| Sbjct: 2716 taaccatg 2723 Score = 71.9 bits (36), Expect = 7e-10 Identities = 45/48 (93%) Strand = Plus / Plus Query: 36 tgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggc 83 |||||| |||||||||||||||||||||||||||| ||||||| |||| Sbjct: 2581 tgaccgtgtgcctgttgaagaatgagccggcgacttataggcactggc 2628
>gb|AY033307.1| Uncultured Prochlorococcus sp. MB11E08 16S ribosomal RNA gene, partial sequence; tRNA-Ile and tRNA-Ala genes, complete sequence; and 23S ribosomal RNA gene, partial sequence Length = 3917 Score = 79.8 bits (40), Expect = 3e-12 Identities = 61/68 (89%) Strand = Plus / Plus Query: 116 agcgaaagcgagtcttaatagggcgattgtcactgcttatggacccgaacctgggtgatc 175 ||||||||||||||||||||||||| |||||| || |||| |||||||||| ||||||| Sbjct: 2657 agcgaaagcgagtcttaatagggcgtttgtcagtgtttatagacccgaaccctggtgatc 2716 Query: 176 tatccatg 183 || ||||| Sbjct: 2717 taaccatg 2724 Score = 71.9 bits (36), Expect = 7e-10 Identities = 45/48 (93%) Strand = Plus / Plus Query: 36 tgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggc 83 |||||| |||||||||||||||||||||||||||| ||||||| |||| Sbjct: 2582 tgaccgtgtgcctgttgaagaatgagccggcgacttataggcactggc 2629
>gb|DQ366719.1| Uncultured Prochlorococcus marinus clone ASNC729 genomic sequence Length = 38521 Score = 79.8 bits (40), Expect = 3e-12 Identities = 61/68 (89%) Strand = Plus / Minus Query: 116 agcgaaagcgagtcttaatagggcgattgtcactgcttatggacccgaacctgggtgatc 175 ||||||||||||||||||||||||| |||||| || |||| |||||||||| ||||||| Sbjct: 20224 agcgaaagcgagtcttaatagggcgtttgtcagtgtttatagacccgaaccctggtgatc 20165 Query: 176 tatccatg 183 || ||||| Sbjct: 20164 taaccatg 20157 Score = 71.9 bits (36), Expect = 7e-10 Identities = 45/48 (93%) Strand = Plus / Minus Query: 36 tgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggc 83 |||||| |||||||||||||||||||||||||||| ||||||| |||| Sbjct: 20299 tgaccgtgtgcctgttgaagaatgagccggcgacttataggcactggc 20252
>gb|DQ366714.1| Uncultured Prochlorococcus marinus clone ASNC2150 genomic sequence Length = 37884 Score = 79.8 bits (40), Expect = 3e-12 Identities = 61/68 (89%) Strand = Plus / Minus Query: 116 agcgaaagcgagtcttaatagggcgattgtcactgcttatggacccgaacctgggtgatc 175 ||||||||||||||||||||||||| |||||| || |||| |||||||||| ||||||| Sbjct: 1978 agcgaaagcgagtcttaatagggcgtttgtcagtgtttatagacccgaaccctggtgatc 1919 Query: 176 tatccatg 183 || ||||| Sbjct: 1918 taaccatg 1911 Score = 71.9 bits (36), Expect = 7e-10 Identities = 45/48 (93%) Strand = Plus / Minus Query: 36 tgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggc 83 |||||| |||||||||||||||||||||||||||| ||||||| |||| Sbjct: 2053 tgaccgtgtgcctgttgaagaatgagccggcgacttataggcactggc 2006
>emb|BX572090.1| Prochlorococcus marinus MED4 complete genome; segment 1/5 Length = 349742 Score = 79.8 bits (40), Expect = 3e-12 Identities = 61/68 (89%) Strand = Plus / Plus Query: 116 agcgaaagcgagtcttaatagggcgattgtcactgcttatggacccgaacctgggtgatc 175 ||||||||||||||||||||||||| |||||| || |||| |||||||||| ||||||| Sbjct: 315722 agcgaaagcgagtcttaatagggcgtttgtcagtgtttatagacccgaaccctggtgatc 315781 Query: 176 tatccatg 183 || ||||| Sbjct: 315782 taaccatg 315789 Score = 71.9 bits (36), Expect = 7e-10 Identities = 45/48 (93%) Strand = Plus / Plus Query: 36 tgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggc 83 |||||| |||||||||||||||||||||||||||| ||||||| |||| Sbjct: 315647 tgaccgtgtgcctgttgaagaatgagccggcgacttataggcactggc 315694
>gb|L43504.1|CRECPRRNLM Chlamydomonas starrii chloroplast large subunit ribosomal RNA (rrnL) gene Length = 3455 Score = 79.8 bits (40), Expect = 3e-12 Identities = 46/48 (95%) Strand = Plus / Plus Query: 36 tgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggc 83 ||||||||||||||||||||||||||||||||||| ||||| |||||| Sbjct: 808 tgaccgcgtgcctgttgaagaatgagccggcgacttataggaagtggc 855 Score = 67.9 bits (34), Expect = 1e-08 Identities = 70/82 (85%) Strand = Plus / Plus Query: 106 ccggagccgtagcgaaagcgagtcttaatagggcgattgtcactgcttatggacccgaac 165 |||||||| ||||||||| ||||| |||||||| |||||| ||||||||||||||| Sbjct: 873 ccggagcctaagcgaaagcaagtctgaatagggctcaagtcacttcttatggacccgaac 932 Query: 166 ctgggtgatctatccatgacca 187 | |||||||||| || |||||| Sbjct: 933 ccgggtgatctaaccgtgacca 954
>gb|L43359.1|PZTCPRRNL Pterosperma cristatum large subunit ribosomal RNA gene, partial sequence; chloroplast gene for chloroplast product Length = 3371 Score = 79.8 bits (40), Expect = 3e-12 Identities = 52/56 (92%) Strand = Plus / Plus Query: 36 tgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggcttggttaa 91 |||| |||||||||||||||||||||||||||||| | ||| |||||||||||||| Sbjct: 569 tgactgcgtgcctgttgaagaatgagccggcgacttagaggtagtggcttggttaa 624 Score = 48.1 bits (24), Expect = 0.010 Identities = 57/68 (83%) Strand = Plus / Plus Query: 116 agcgaaagcgagtcttaatagggcgattgtcactgcttatggacccgaacctgggtgatc 175 ||||||||||||||| |||||||| | ||| |||| | | |||||||||| | |||||| Sbjct: 646 agcgaaagcgagtctgaatagggcattggtccctgcctctagacccgaacccgagtgatc 705 Query: 176 tatccatg 183 || ||||| Sbjct: 706 taaccatg 713
>gb|L43354.1|CRECPRRNLE Chlamydomonas iyengarii chloroplast large subunit ribosomal RNA (rrnL) gene Length = 3923 Score = 79.8 bits (40), Expect = 3e-12 Identities = 46/48 (95%) Strand = Plus / Plus Query: 36 tgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggc 83 ||||||||||||||||||||||||||||||||||| ||||| |||||| Sbjct: 643 tgaccgcgtgcctgttgaagaatgagccggcgacttataggaagtggc 690 Score = 71.9 bits (36), Expect = 7e-10 Identities = 63/72 (87%) Strand = Plus / Plus Query: 106 ccggagccgtagcgaaagcgagtcttaatagggcgattgtcactgcttatggacccgaac 165 |||||||| ||||||||| ||||| |||||||| | |||||| ||||||||||||||| Sbjct: 708 ccggagcctaagcgaaagcaagtctgaatagggctacagtcacttcttatggacccgaac 767 Query: 166 ctgggtgatcta 177 | |||||||||| Sbjct: 768 ccgggtgatcta 779
>dbj|AP008231.1| Synechococcus elongatus PCC 6301 DNA, complete genome Length = 2696255 Score = 79.8 bits (40), Expect = 3e-12 Identities = 61/68 (89%) Strand = Plus / Plus Query: 116 agcgaaagcgagtcttaatagggcgattgtcactgcttatggacccgaacctgggtgatc 175 ||||||||||||||| ||||||||||| |||| || |||| |||||||||| |||||||| Sbjct: 1659136 agcgaaagcgagtctgaatagggcgatagtcagtgtttatagacccgaacccgggtgatc 1659195 Query: 176 tatccatg 183 || ||||| Sbjct: 1659196 taaccatg 1659203 Score = 79.8 bits (40), Expect = 3e-12 Identities = 61/68 (89%) Strand = Plus / Minus Query: 116 agcgaaagcgagtcttaatagggcgattgtcactgcttatggacccgaacctgggtgatc 175 ||||||||||||||| ||||||||||| |||| || |||| |||||||||| |||||||| Sbjct: 1049608 agcgaaagcgagtctgaatagggcgatagtcagtgtttatagacccgaacccgggtgatc 1049549 Query: 176 tatccatg 183 || ||||| Sbjct: 1049548 taaccatg 1049541 Score = 71.9 bits (36), Expect = 7e-10 Identities = 45/48 (93%) Strand = Plus / Plus Query: 36 tgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggc 83 |||| |||||||||||||||||||||||||||||| ||||||| |||| Sbjct: 1659061 tgacggcgtgcctgttgaagaatgagccggcgacttataggcactggc 1659108 Score = 71.9 bits (36), Expect = 7e-10 Identities = 45/48 (93%) Strand = Plus / Minus Query: 36 tgaccgcgtgcctgttgaagaatgagccggcgactcataggcagtggc 83 |||| |||||||||||||||||||||||||||||| ||||||| |||| Sbjct: 1049683 tgacggcgtgcctgttgaagaatgagccggcgacttataggcactggc 1049636 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 982,927 Number of Sequences: 3902068 Number of extensions: 982927 Number of successful extensions: 65418 Number of sequences better than 10.0: 1973 Number of HSP's better than 10.0 without gapping: 1983 Number of HSP's successfully gapped in prelim test: 4 Number of HSP's that attempted gapping in prelim test: 59503 Number of HSP's gapped (non-prelim): 5742 length of query: 188 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 166 effective length of database: 17,147,199,772 effective search space: 2846435162152 effective search space used: 2846435162152 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)
