Clone Name | basd2k18 |
---|---|
Clone Library Name | barley_pub |
>YHW2_YEAST (P38857) UPF0041 protein YHR162w| Length = 129 Score = 31.2 bits (69), Expect = 1.2 Identities = 17/61 (27%), Positives = 31/61 (50%) Frame = +3 Query: 30 KTHGVQEMSMQSTSMLTIKWTLRGKPKNAFFAAAGGELVLRVDSQFVLNQISGQVLEHAE 209 K G Q +S+ ST+++ +W+ KP+N A+ L L Q L +I+ + + + Sbjct: 48 KISGAQNLSLLSTALIWTRWSFVIKPRNILLASVNSFLCLTAGYQ--LGRIANYRIRNGD 105 Query: 210 S 212 S Sbjct: 106 S 106
>SYC_SULSO (Q97WE6) Cysteinyl-tRNA synthetase (EC 6.1.1.16) (Cysteine--tRNA| ligase) (CysRS) Length = 470 Score = 30.8 bits (68), Expect = 1.6 Identities = 13/60 (21%), Positives = 30/60 (50%) Frame = +3 Query: 234 PLAQAYFWFSRRVYSTVEAGKDTIEAAKGVASRLNKDDNLEVYPDPLGDPTKFFTRPDDL 413 P Y++ + S ++ ++ +E AK R+ D++ + D + + KF+ + DD+ Sbjct: 286 PSVLRYWYLTSHYRSPIDFSEEALEQAKSALQRIK--DSMAIIRDVISEGPKFYVKDDDI 343
>RAPG_BACSU (O32294) Response regulator aspartate phosphatase G (EC 3.1.-.-)| Length = 365 Score = 30.4 bits (67), Expect = 2.0 Identities = 19/77 (24%), Positives = 41/77 (53%) Frame = +3 Query: 144 VLRVDSQFVLNQISGQVLEHAESWDLSSSSPLAQAYFWFSRRVYSTVEAGKDTIEAAKGV 323 +L + + +L++ GQ +H E ++++S + + YF+ +Y EA K+ + A G+ Sbjct: 54 LLELRHKVLLHEARGQGFQHEEPSHMNATSDMLKYYFFLFEGMY---EAYKNNYDIAIGL 110 Query: 324 ASRLNKDDNLEVYPDPL 374 + + L+ PDP+ Sbjct: 111 YK--DAEQYLDNIPDPI 125
>FAL1_KLULA (Q6CX73) ATP-dependent RNA helicase FAL1 (EC 3.6.1.-)| Length = 398 Score = 29.6 bits (65), Expect = 3.5 Identities = 23/90 (25%), Positives = 39/90 (43%), Gaps = 2/90 (2%) Frame = +3 Query: 168 VLNQISGQVLE--HAESWDLSSSSPLAQAYFWFSRRVYSTVEAGKDTIEAAKGVASRLNK 341 VL+ I QVL + + L + L F +++Y TI+ V S Sbjct: 152 VLDMIKRQVLNVRNCKILVLDEADELLGETLGFKQQIYDIFTKLPPTIQVV--VVSATMS 209 Query: 342 DDNLEVYPDPLGDPTKFFTRPDDLNQDVVQ 431 D LE+ + DP K + D+++ DV++ Sbjct: 210 KDILEITKKFMSDPVKILVKRDEISLDVIK 239
>VP2_RGDV (O56834) Minor outer capsid protein (P2 outer capsid protein)| Length = 1148 Score = 28.9 bits (63), Expect = 5.9 Identities = 13/38 (34%), Positives = 18/38 (47%) Frame = +3 Query: 21 GPGKTHGVQEMSMQSTSMLTIKWTLRGKPKNAFFAAAG 134 GPG V E + + + + WTL G K + AAG Sbjct: 1006 GPGMFKAVTESTTEVGNFKAVDWTLSGMTKEEIYNAAG 1043
>VP2_RDVO (O55519) Minor outer capsid protein (P2 outer capsid protein)| Length = 1148 Score = 28.5 bits (62), Expect = 7.7 Identities = 11/38 (28%), Positives = 20/38 (52%) Frame = +3 Query: 21 GPGKTHGVQEMSMQSTSMLTIKWTLRGKPKNAFFAAAG 134 GPG+ + E + + + + WT+ G + +AAAG Sbjct: 1006 GPGRFKAIVESTTEVGNFRVVDWTVSGMSRYEIYAAAG 1043
>YG56_YEAST (P53311) UPF0041 protein YGR243w| Length = 146 Score = 28.5 bits (62), Expect = 7.7 Identities = 11/33 (33%), Positives = 20/33 (60%) Frame = +3 Query: 30 KTHGVQEMSMQSTSMLTIKWTLRGKPKNAFFAA 128 K G Q +S+ +T+++ +W+ KPKN A+ Sbjct: 48 KVSGAQNLSLLATALIWTRWSFVIKPKNYLLAS 80
>VP2_RDVF (Q98632) Minor outer capsid protein (P2 outer capsid protein)| Length = 1116 Score = 28.5 bits (62), Expect = 7.7 Identities = 11/38 (28%), Positives = 20/38 (52%) Frame = +3 Query: 21 GPGKTHGVQEMSMQSTSMLTIKWTLRGKPKNAFFAAAG 134 GPG+ + E + + + + WT+ G + +AAAG Sbjct: 1006 GPGRFKAIVESTTEVGNFRVVDWTVSGMSRYEIYAAAG 1043
>ORN_TROW8 (Q83HW9) Oligoribonuclease (EC 3.1.-.-)| Length = 184 Score = 28.5 bits (62), Expect = 7.7 Identities = 16/46 (34%), Positives = 24/46 (52%) Frame = -3 Query: 416 VQIIRPRKELRGISQGVRINLQIVVLVQPGCHALGGLDRVLAGLHR 279 V +I K+L + +GV V+V P ALG +D +A +HR Sbjct: 30 VAVIVTDKDLLPLDEGVN------VVVSPSSEALGAMDNYVARMHR 69 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 62,792,120 Number of Sequences: 219361 Number of extensions: 1178229 Number of successful extensions: 3908 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 3797 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3908 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2628831825 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)