>YHW2_YEAST (P38857) UPF0041 protein YHR162w|
          Length = 129

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 17/61 (27%), Positives = 31/61 (50%)
 Frame = +3

Query: 30  KTHGVQEMSMQSTSMLTIKWTLRGKPKNAFFAAAGGELVLRVDSQFVLNQISGQVLEHAE 209
           K  G Q +S+ ST+++  +W+   KP+N   A+    L L    Q  L +I+   + + +
Sbjct: 48  KISGAQNLSLLSTALIWTRWSFVIKPRNILLASVNSFLCLTAGYQ--LGRIANYRIRNGD 105

Query: 210 S 212
           S
Sbjct: 106 S 106

>SYC_SULSO (Q97WE6) Cysteinyl-tRNA synthetase (EC 6.1.1.16) (Cysteine--tRNA|
           ligase) (CysRS)
          Length = 470

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 13/60 (21%), Positives = 30/60 (50%)
 Frame = +3

Query: 234 PLAQAYFWFSRRVYSTVEAGKDTIEAAKGVASRLNKDDNLEVYPDPLGDPTKFFTRPDDL 413
           P    Y++ +    S ++  ++ +E AK    R+   D++ +  D + +  KF+ + DD+
Sbjct: 286 PSVLRYWYLTSHYRSPIDFSEEALEQAKSALQRIK--DSMAIIRDVISEGPKFYVKDDDI 343

>RAPG_BACSU (O32294) Response regulator aspartate phosphatase G (EC 3.1.-.-)|
          Length = 365

 Score = 30.4 bits (67), Expect = 2.0
 Identities = 19/77 (24%), Positives = 41/77 (53%)
 Frame = +3

Query: 144 VLRVDSQFVLNQISGQVLEHAESWDLSSSSPLAQAYFWFSRRVYSTVEAGKDTIEAAKGV 323
           +L +  + +L++  GQ  +H E   ++++S + + YF+    +Y   EA K+  + A G+
Sbjct: 54  LLELRHKVLLHEARGQGFQHEEPSHMNATSDMLKYYFFLFEGMY---EAYKNNYDIAIGL 110

Query: 324 ASRLNKDDNLEVYPDPL 374
               + +  L+  PDP+
Sbjct: 111 YK--DAEQYLDNIPDPI 125

>FAL1_KLULA (Q6CX73) ATP-dependent RNA helicase FAL1 (EC 3.6.1.-)|
          Length = 398

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 23/90 (25%), Positives = 39/90 (43%), Gaps = 2/90 (2%)
 Frame = +3

Query: 168 VLNQISGQVLE--HAESWDLSSSSPLAQAYFWFSRRVYSTVEAGKDTIEAAKGVASRLNK 341
           VL+ I  QVL   + +   L  +  L      F +++Y        TI+    V S    
Sbjct: 152 VLDMIKRQVLNVRNCKILVLDEADELLGETLGFKQQIYDIFTKLPPTIQVV--VVSATMS 209

Query: 342 DDNLEVYPDPLGDPTKFFTRPDDLNQDVVQ 431
            D LE+    + DP K   + D+++ DV++
Sbjct: 210 KDILEITKKFMSDPVKILVKRDEISLDVIK 239

>VP2_RGDV (O56834) Minor outer capsid protein (P2 outer capsid protein)|
          Length = 1148

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +3

Query: 21   GPGKTHGVQEMSMQSTSMLTIKWTLRGKPKNAFFAAAG 134
            GPG    V E + +  +   + WTL G  K   + AAG
Sbjct: 1006 GPGMFKAVTESTTEVGNFKAVDWTLSGMTKEEIYNAAG 1043

>VP2_RDVO (O55519) Minor outer capsid protein (P2 outer capsid protein)|
          Length = 1148

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = +3

Query: 21   GPGKTHGVQEMSMQSTSMLTIKWTLRGKPKNAFFAAAG 134
            GPG+   + E + +  +   + WT+ G  +   +AAAG
Sbjct: 1006 GPGRFKAIVESTTEVGNFRVVDWTVSGMSRYEIYAAAG 1043

>YG56_YEAST (P53311) UPF0041 protein YGR243w|
          Length = 146

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +3

Query: 30  KTHGVQEMSMQSTSMLTIKWTLRGKPKNAFFAA 128
           K  G Q +S+ +T+++  +W+   KPKN   A+
Sbjct: 48  KVSGAQNLSLLATALIWTRWSFVIKPKNYLLAS 80

>VP2_RDVF (Q98632) Minor outer capsid protein (P2 outer capsid protein)|
          Length = 1116

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = +3

Query: 21   GPGKTHGVQEMSMQSTSMLTIKWTLRGKPKNAFFAAAG 134
            GPG+   + E + +  +   + WT+ G  +   +AAAG
Sbjct: 1006 GPGRFKAIVESTTEVGNFRVVDWTVSGMSRYEIYAAAG 1043

>ORN_TROW8 (Q83HW9) Oligoribonuclease (EC 3.1.-.-)|
          Length = 184

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = -3

Query: 416 VQIIRPRKELRGISQGVRINLQIVVLVQPGCHALGGLDRVLAGLHR 279
           V +I   K+L  + +GV       V+V P   ALG +D  +A +HR
Sbjct: 30  VAVIVTDKDLLPLDEGVN------VVVSPSSEALGAMDNYVARMHR 69


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,792,120
Number of Sequences: 219361
Number of extensions: 1178229
Number of successful extensions: 3908
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3797
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3908
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2628831825
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)