>gb|AC157977.1| Genomic sequence for Zea mays chromosome 8 BAC clone ZMMBBb0284N04,
             complete sequence
          Length = 107631

 Score =  159 bits (80), Expect = 9e-36
 Identities = 227/276 (82%)
 Strand = Plus / Minus

                                                                         
Query: 42    gtccaggaaatgtcgatgcaatccacgagcatgttgaccatcaagtggacgctgaggggg 101
             |||||||||||||| ||||| || |||||||   |||||||||  ||| || |||| |||
Sbjct: 77864 gtccaggaaatgtcaatgcagtcgacgagcaacctgaccatcagatgggcgttgagaggg 77805

                                                                         
Query: 102   aaacccaagaacgcattcttcgcggccgcaggaggggagctggtcctccgcgtcgactcg 161
             || || |||||| | || ||||||  ||  ||||| ||  |  || |||||||||| || 
Sbjct: 77804 aagcctaagaacccgttgttcgcgagcgtcggaggagacgtcatcgtccgcgtcgagtca 77745

                                                                         
Query: 162   cagttcgtcctgaaccagatcagcgggcaggtgctggagcacgccgagtcgtgggacctc 221
             | |||||||||||||||||| |||||||||||||||||||| |||||||| |||||||||
Sbjct: 77744 cggttcgtcctgaaccagataagcgggcaggtgctggagcaggccgagtcctgggacctc 77685

                                                                         
Query: 222   tcctcgtcgtcccctctcgcgcaggcctacttctggttttccaggagggtctactccacg 281
             ||| | |||||||  |  || ||||||||||||||| | ||| | |||||||||||| | 
Sbjct: 77684 tccgcctcgtccctccctgcccaggcctacttctggctgtcccgaagggtctactccgcc 77625

                                                 
Query: 282   gtggaggccggcaaggacacgatcgaggccgccaag 317
             |||||| |||| |||||| ||||||| |||||||||
Sbjct: 77624 gtggagtccgggaaggacgcgatcgaagccgccaag 77589

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 119/146 (81%)
 Strand = Plus / Plus

                                                                            
Query: 162      cagttcgtcctgaaccagatcagcgggcaggtgctggagcacgccgagtcgtgggacctc 221
                ||||||||  |||||||||| ||||| || ||||| || || | ||| || |||||||||
Sbjct: 39772591 cagttcgtattgaaccagattagcggccaagtgctcgaacaggtcgactcatgggacctc 39772650

                                                                            
Query: 222      tcctcgtcgtcccctctcgcgcaggcctacttctggttttccaggagggtctactccacg 281
                ||  | ||||| ||||  || ||||||||||| ||||| |||||||||| || |||||| 
Sbjct: 39772651 tctgcctcgtctcctcctgcccaggcctacttttggttgtccaggagggccttctccact 39772710

                                          
Query: 282      gtggaggccggcaaggacacgatcga 307
                || || ||||| |||||||| |||||
Sbjct: 39772711 gttgaagccggaaaggacacaatcga 39772736



 Score = 44.1 bits (22), Expect = 0.38
 Identities = 43/50 (86%)
 Strand = Plus / Plus

                                                                  
Query: 42       gtccaggaaatgtcgatgcaatccacgagcatgttgaccatcaagtggac 91
                |||||||||||||| |||||||| || ||||   |||||||||| |||||
Sbjct: 39772471 gtccaggaaatgtcaatgcaatcgacaagcaacctgaccatcaaatggac 39772520

>dbj|AP003436.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0470A12
          Length = 185095

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 119/146 (81%)
 Strand = Plus / Plus

                                                                          
Query: 162    cagttcgtcctgaaccagatcagcgggcaggtgctggagcacgccgagtcgtgggacctc 221
              ||||||||  |||||||||| ||||| || ||||| || || | ||| || |||||||||
Sbjct: 123490 cagttcgtattgaaccagattagcggccaagtgctcgaacaggtcgactcatgggacctc 123549

                                                                          
Query: 222    tcctcgtcgtcccctctcgcgcaggcctacttctggttttccaggagggtctactccacg 281
              ||  | ||||| ||||  || ||||||||||| ||||| |||||||||| || |||||| 
Sbjct: 123550 tctgcctcgtctcctcctgcccaggcctacttttggttgtccaggagggccttctccact 123609

                                        
Query: 282    gtggaggccggcaaggacacgatcga 307
              || || ||||| |||||||| |||||
Sbjct: 123610 gttgaagccggaaaggacacaatcga 123635



 Score = 44.1 bits (22), Expect = 0.38
 Identities = 43/50 (86%)
 Strand = Plus / Plus

                                                                
Query: 42     gtccaggaaatgtcgatgcaatccacgagcatgttgaccatcaagtggac 91
              |||||||||||||| |||||||| || ||||   |||||||||| |||||
Sbjct: 123370 gtccaggaaatgtcaatgcaatcgacaagcaacctgaccatcaaatggac 123419

>dbj|AK068528.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013155P10, full
           insert sequence
          Length = 1050

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 119/146 (81%)
 Strand = Plus / Plus

                                                                       
Query: 162 cagttcgtcctgaaccagatcagcgggcaggtgctggagcacgccgagtcgtgggacctc 221
           ||||||||  |||||||||| ||||| || ||||| || || | ||| || |||||||||
Sbjct: 606 cagttcgtattgaaccagattagcggccaagtgctcgaacaggtcgactcatgggacctc 665

                                                                       
Query: 222 tcctcgtcgtcccctctcgcgcaggcctacttctggttttccaggagggtctactccacg 281
           ||  | ||||| ||||  || ||||||||||| ||||| |||||||||| || |||||| 
Sbjct: 666 tctgcctcgtctcctcctgcccaggcctacttttggttgtccaggagggccttctccact 725

                                     
Query: 282 gtggaggccggcaaggacacgatcga 307
           || || ||||| |||||||| |||||
Sbjct: 726 gttgaagccggaaaggacacaatcga 751



 Score = 44.1 bits (22), Expect = 0.38
 Identities = 43/50 (86%)
 Strand = Plus / Plus

                                                             
Query: 42  gtccaggaaatgtcgatgcaatccacgagcatgttgaccatcaagtggac 91
           |||||||||||||| |||||||| || ||||   |||||||||| |||||
Sbjct: 486 gtccaggaaatgtcaatgcaatcgacaagcaacctgaccatcaaatggac 535

>ref|NM_189902.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 948

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 56/65 (86%)
 Strand = Plus / Plus

                                                                       
Query: 243 caggcctacttctggttttccaggagggtctactccacggtggaggccggcaaggacacg 302
           ||||||||||| ||||| |||||||||| || |||||| || || ||||| |||||||| 
Sbjct: 691 caggcctacttttggttgtccaggagggccttctccactgttgaagccggaaaggacaca 750

                
Query: 303 atcga 307
           |||||
Sbjct: 751 atcga 755



 Score = 44.1 bits (22), Expect = 0.38
 Identities = 43/50 (86%)
 Strand = Plus / Plus

                                                             
Query: 42  gtccaggaaatgtcgatgcaatccacgagcatgttgaccatcaagtggac 91
           |||||||||||||| |||||||| || ||||   |||||||||| |||||
Sbjct: 532 gtccaggaaatgtcaatgcaatcgacaagcaacctgaccatcaaatggac 581

>emb|AL035697.19|HS45F6 Human DNA sequence from clone RP1-45F6 on chromosome 6q25.3-27 Contains
              part of the PARK2 gene for Parkinson disease (autosomal
              recessive, juvenile) 2, parkin (PDJ, PRKN, AR-JP), complete
              sequence
          Length = 134780

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 41     tgtccaggaaatgtcgatgcaa 62
              ||||||||||||||||||||||
Sbjct: 133473 tgtccaggaaatgtcgatgcaa 133452

>emb|AL596202.5| Human DNA sequence from clone RP11-477D19 on chromosome 6 Contains part
             of the TIAM2 gene for T-cell lymphoma invasion and
             metastasis 2 (SIF and Tiam 1-like exchange factor (STEF)),
             the 3' end of the TFB1M gene for transcription factor B1,
             mitochondrial (CGI-75 protein homolog of yeast
             mitochondrial transcription factor BCGI75 (mtTFB, CGI-75))
             and a novel gene, complete sequence
          Length = 26282

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 349   atctggaggtttatcctgaccccct 373
             |||||||||||||||||||| ||||
Sbjct: 14653 atctggaggtttatcctgacgccct 14677

>gb|DQ159858.1| Uncultured bacterium clone hbC_H01 putative dissimilatory nitrite
           reductase (nirK) gene, partial cds
          Length = 423

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 296 ggacacgatcgaggccgccaagggc 320
           ||||||||||||| |||||||||||
Sbjct: 138 ggacacgatcgagaccgccaagggc 162

>gb|DQ159787.1| Uncultured bacterium clone hbC_H2 putative dissimilatory nitrite
           reductase (nirK) gene, partial cds
          Length = 425

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 296 ggacacgatcgaggccgccaagggc 320
           ||||||||||||| |||||||||||
Sbjct: 139 ggacacgatcgagaccgccaagggc 163

>gb|DQ159785.1| Uncultured bacterium clone hbC_G9 putative dissimilatory nitrite
           reductase (nirK) gene, partial cds
          Length = 425

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 296 ggacacgatcgaggccgccaagggc 320
           ||||||||||||| |||||||||||
Sbjct: 139 ggacacgatcgagaccgccaagggc 163

>gb|DQ159784.1| Uncultured bacterium clone hbC_G12 putative dissimilatory nitrite
           reductase (nirK) gene, partial cds
          Length = 425

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 296 ggacacgatcgaggccgccaagggc 320
           ||||||||||||| |||||||||||
Sbjct: 139 ggacacgatcgagaccgccaagggc 163

>gb|DQ159774.1| Uncultured bacterium clone hbC_E7 putative dissimilatory nitrite
           reductase (nirK) gene, partial cds
          Length = 425

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 296 ggacacgatcgaggccgccaagggc 320
           ||||||||||||| |||||||||||
Sbjct: 139 ggacacgatcgagaccgccaagggc 163

>gb|DQ159771.1| Uncultured bacterium clone hbC_E2 putative dissimilatory nitrite
           reductase (nirK) gene, partial cds
          Length = 425

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 296 ggacacgatcgaggccgccaagggc 320
           ||||||||||||| |||||||||||
Sbjct: 139 ggacacgatcgagaccgccaagggc 163

>gb|DQ159761.1| Uncultured bacterium clone hbC_C8 putative dissimilatory nitrite
           reductase (nirK) gene, partial cds
          Length = 425

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 296 ggacacgatcgaggccgccaagggc 320
           ||||||||||||| |||||||||||
Sbjct: 139 ggacacgatcgagaccgccaagggc 163

>gb|DQ159759.1| Uncultured bacterium clone hbC_C2 putative dissimilatory nitrite
           reductase (nirK) gene, partial cds
          Length = 425

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 296 ggacacgatcgaggccgccaagggc 320
           ||||||||||||| |||||||||||
Sbjct: 139 ggacacgatcgagaccgccaagggc 163

>gb|CP000081.1| Leishmania major chromosome 35, complete sequence
          Length = 2090491

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 60      caatccacgagcatgttgac 79
               ||||||||||||||||||||
Sbjct: 2077815 caatccacgagcatgttgac 2077796

>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome
          Length = 4403837

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 306    gaggccgccaagggcgtggc 325
              ||||||||||||||||||||
Sbjct: 422989 gaggccgccaagggcgtggc 423008

>ref|XM_838547.1| Leishmania major strain Friedlin hypothetical protein (LMJ_1467)
            partial mRNA
          Length = 19875

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 60   caatccacgagcatgttgac 79
            ||||||||||||||||||||
Sbjct: 8879 caatccacgagcatgttgac 8860

>ref|XM_539963.2| PREDICTED: Canis familiaris similar to Tumor necrosis factor
           receptor superfamily member 21 precursor (TNFR-related
           death receptor-6) (Death receptor 6) (LOC482848), mRNA
          Length = 1994

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 122 cgcggccgcaggaggggagc 141
           ||||||||||||||||||||
Sbjct: 49  cgcggccgcaggaggggagc 30

>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence
          Length = 3806533

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 293     caaggacacgatcgaggccg 312
               ||||||||||||||||||||
Sbjct: 3458692 caaggacacgatcgaggccg 3458673



 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 304     tcgaggccgccaagggcgtg 323
               ||||||||||||||||||||
Sbjct: 2544158 tcgaggccgccaagggcgtg 2544139

>emb|X99543.1|DBRBORUB D.baarsii rbo & rub genes
          Length = 917

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 302 gatcgaggccgccaagggcgtggc 325
           ||||||||||||||||| ||||||
Sbjct: 496 gatcgaggccgccaaggtcgtggc 519

>emb|X58406.1|MTDNAGRP M.tuberculosis dnaK, grpE, and dnaJ genes
          Length = 4644

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 306  gaggccgccaagggcgtggc 325
            ||||||||||||||||||||
Sbjct: 3253 gaggccgccaagggcgtggc 3272

>emb|X06422.1|MTDNAJ M. tuberculosis dnaJ gene
          Length = 1116

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 306 gaggccgccaagggcgtggc 325
           ||||||||||||||||||||
Sbjct: 514 gaggccgccaagggcgtggc 533

>emb|BX842573.1| Mycobacterium tuberculosis H37Rv complete genome; segment 2/13
          Length = 342416

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 306   gaggccgccaagggcgtggc 325
             ||||||||||||||||||||
Sbjct: 81022 gaggccgccaagggcgtggc 81041

>emb|BX248335.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment
             2/14
          Length = 324050

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 306   gaggccgccaagggcgtggc 325
             ||||||||||||||||||||
Sbjct: 80958 gaggccgccaagggcgtggc 80977

>emb|AL663049.8| Mouse DNA sequence from clone RP23-198N8 on chromosome 11 Contains the
              Mor2 gene for soluble malate dehydrogenase, a novel gene, a
              phosphoglycerate mutase (Pgam) pseudogene and a CpG island,
              complete sequence
          Length = 203295

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 130    caggaggggagctggtcctc 149
              ||||||||||||||||||||
Sbjct: 168891 caggaggggagctggtcctc 168910

>gb|AY131229.2| Streptomyces sp. 139 exopolysaccharide gene cluster, complete
            sequence
          Length = 31310

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 190  aggtgctggagcacgccgag 209
            ||||||||||||||||||||
Sbjct: 9385 aggtgctggagcacgccgag 9404

>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome
          Length = 7074893

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 190     aggtgctggagcacgccgag 209
               ||||||||||||||||||||
Sbjct: 1694813 aggtgctggagcacgccgag 1694794

>gb|AE012226.1| Xanthomonas campestris pv. campestris str. ATCC 33913,  section 134
            of 460 of the complete genome
          Length = 11922

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 277  ccacggtggaggccggcaag 296
            ||||||||||||||||||||
Sbjct: 1833 ccacggtggaggccggcaag 1814

>gb|CP000133.1| Rhizobium etli CFN 42, complete genome
          Length = 4381608

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 224     ctcgtcgtcccctctcgcgc 243
               ||||||||||||||||||||
Sbjct: 1640857 ctcgtcgtcccctctcgcgc 1640838

>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome
          Length = 5148708

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 277     ccacggtggaggccggcaag 296
               ||||||||||||||||||||
Sbjct: 3561711 ccacggtggaggccggcaag 3561730

>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 297     gacacgatcgaggccgccaagggc 320
               |||||||||||||||| |||||||
Sbjct: 1540181 gacacgatcgaggccggcaagggc 1540204

>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 185    cgggcaggtgctggagcacgccga 208
              ||||||||||||||||| ||||||
Sbjct: 114076 cgggcaggtgctggagctcgccga 114053

>gb|AC118614.12| Mus musculus chromosome 18, clone RP23-477B20, complete sequence
          Length = 159912

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 92     gctgagggggaaacccaaga 111
              ||||||||||||||||||||
Sbjct: 119960 gctgagggggaaacccaaga 119941


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,558,253
Number of Sequences: 3902068
Number of extensions: 2558253
Number of successful extensions: 43856
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 43333
Number of HSP's gapped (non-prelim): 522
length of query: 442
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 420
effective length of database: 17,147,199,772
effective search space: 7201823904240
effective search space used: 7201823904240
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)