Clone Name | basd2k18 |
---|---|
Clone Library Name | barley_pub |
>gb|AC157977.1| Genomic sequence for Zea mays chromosome 8 BAC clone ZMMBBb0284N04, complete sequence Length = 107631 Score = 159 bits (80), Expect = 9e-36 Identities = 227/276 (82%) Strand = Plus / Minus Query: 42 gtccaggaaatgtcgatgcaatccacgagcatgttgaccatcaagtggacgctgaggggg 101 |||||||||||||| ||||| || ||||||| ||||||||| ||| || |||| ||| Sbjct: 77864 gtccaggaaatgtcaatgcagtcgacgagcaacctgaccatcagatgggcgttgagaggg 77805 Query: 102 aaacccaagaacgcattcttcgcggccgcaggaggggagctggtcctccgcgtcgactcg 161 || || |||||| | || |||||| || ||||| || | || |||||||||| || Sbjct: 77804 aagcctaagaacccgttgttcgcgagcgtcggaggagacgtcatcgtccgcgtcgagtca 77745 Query: 162 cagttcgtcctgaaccagatcagcgggcaggtgctggagcacgccgagtcgtgggacctc 221 | |||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||| Sbjct: 77744 cggttcgtcctgaaccagataagcgggcaggtgctggagcaggccgagtcctgggacctc 77685 Query: 222 tcctcgtcgtcccctctcgcgcaggcctacttctggttttccaggagggtctactccacg 281 ||| | ||||||| | || ||||||||||||||| | ||| | |||||||||||| | Sbjct: 77684 tccgcctcgtccctccctgcccaggcctacttctggctgtcccgaagggtctactccgcc 77625 Query: 282 gtggaggccggcaaggacacgatcgaggccgccaag 317 |||||| |||| |||||| ||||||| ||||||||| Sbjct: 77624 gtggagtccgggaaggacgcgatcgaagccgccaag 77589
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 75.8 bits (38), Expect = 1e-10 Identities = 119/146 (81%) Strand = Plus / Plus Query: 162 cagttcgtcctgaaccagatcagcgggcaggtgctggagcacgccgagtcgtgggacctc 221 |||||||| |||||||||| ||||| || ||||| || || | ||| || ||||||||| Sbjct: 39772591 cagttcgtattgaaccagattagcggccaagtgctcgaacaggtcgactcatgggacctc 39772650 Query: 222 tcctcgtcgtcccctctcgcgcaggcctacttctggttttccaggagggtctactccacg 281 || | ||||| |||| || ||||||||||| ||||| |||||||||| || |||||| Sbjct: 39772651 tctgcctcgtctcctcctgcccaggcctacttttggttgtccaggagggccttctccact 39772710 Query: 282 gtggaggccggcaaggacacgatcga 307 || || ||||| |||||||| ||||| Sbjct: 39772711 gttgaagccggaaaggacacaatcga 39772736 Score = 44.1 bits (22), Expect = 0.38 Identities = 43/50 (86%) Strand = Plus / Plus Query: 42 gtccaggaaatgtcgatgcaatccacgagcatgttgaccatcaagtggac 91 |||||||||||||| |||||||| || |||| |||||||||| ||||| Sbjct: 39772471 gtccaggaaatgtcaatgcaatcgacaagcaacctgaccatcaaatggac 39772520
>dbj|AP003436.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0470A12 Length = 185095 Score = 75.8 bits (38), Expect = 1e-10 Identities = 119/146 (81%) Strand = Plus / Plus Query: 162 cagttcgtcctgaaccagatcagcgggcaggtgctggagcacgccgagtcgtgggacctc 221 |||||||| |||||||||| ||||| || ||||| || || | ||| || ||||||||| Sbjct: 123490 cagttcgtattgaaccagattagcggccaagtgctcgaacaggtcgactcatgggacctc 123549 Query: 222 tcctcgtcgtcccctctcgcgcaggcctacttctggttttccaggagggtctactccacg 281 || | ||||| |||| || ||||||||||| ||||| |||||||||| || |||||| Sbjct: 123550 tctgcctcgtctcctcctgcccaggcctacttttggttgtccaggagggccttctccact 123609 Query: 282 gtggaggccggcaaggacacgatcga 307 || || ||||| |||||||| ||||| Sbjct: 123610 gttgaagccggaaaggacacaatcga 123635 Score = 44.1 bits (22), Expect = 0.38 Identities = 43/50 (86%) Strand = Plus / Plus Query: 42 gtccaggaaatgtcgatgcaatccacgagcatgttgaccatcaagtggac 91 |||||||||||||| |||||||| || |||| |||||||||| ||||| Sbjct: 123370 gtccaggaaatgtcaatgcaatcgacaagcaacctgaccatcaaatggac 123419
>dbj|AK068528.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013155P10, full insert sequence Length = 1050 Score = 75.8 bits (38), Expect = 1e-10 Identities = 119/146 (81%) Strand = Plus / Plus Query: 162 cagttcgtcctgaaccagatcagcgggcaggtgctggagcacgccgagtcgtgggacctc 221 |||||||| |||||||||| ||||| || ||||| || || | ||| || ||||||||| Sbjct: 606 cagttcgtattgaaccagattagcggccaagtgctcgaacaggtcgactcatgggacctc 665 Query: 222 tcctcgtcgtcccctctcgcgcaggcctacttctggttttccaggagggtctactccacg 281 || | ||||| |||| || ||||||||||| ||||| |||||||||| || |||||| Sbjct: 666 tctgcctcgtctcctcctgcccaggcctacttttggttgtccaggagggccttctccact 725 Query: 282 gtggaggccggcaaggacacgatcga 307 || || ||||| |||||||| ||||| Sbjct: 726 gttgaagccggaaaggacacaatcga 751 Score = 44.1 bits (22), Expect = 0.38 Identities = 43/50 (86%) Strand = Plus / Plus Query: 42 gtccaggaaatgtcgatgcaatccacgagcatgttgaccatcaagtggac 91 |||||||||||||| |||||||| || |||| |||||||||| ||||| Sbjct: 486 gtccaggaaatgtcaatgcaatcgacaagcaacctgaccatcaaatggac 535
>ref|NM_189902.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 948 Score = 58.0 bits (29), Expect = 3e-05 Identities = 56/65 (86%) Strand = Plus / Plus Query: 243 caggcctacttctggttttccaggagggtctactccacggtggaggccggcaaggacacg 302 ||||||||||| ||||| |||||||||| || |||||| || || ||||| |||||||| Sbjct: 691 caggcctacttttggttgtccaggagggccttctccactgttgaagccggaaaggacaca 750 Query: 303 atcga 307 ||||| Sbjct: 751 atcga 755 Score = 44.1 bits (22), Expect = 0.38 Identities = 43/50 (86%) Strand = Plus / Plus Query: 42 gtccaggaaatgtcgatgcaatccacgagcatgttgaccatcaagtggac 91 |||||||||||||| |||||||| || |||| |||||||||| ||||| Sbjct: 532 gtccaggaaatgtcaatgcaatcgacaagcaacctgaccatcaaatggac 581
>emb|AL035697.19|HS45F6 Human DNA sequence from clone RP1-45F6 on chromosome 6q25.3-27 Contains part of the PARK2 gene for Parkinson disease (autosomal recessive, juvenile) 2, parkin (PDJ, PRKN, AR-JP), complete sequence Length = 134780 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Minus Query: 41 tgtccaggaaatgtcgatgcaa 62 |||||||||||||||||||||| Sbjct: 133473 tgtccaggaaatgtcgatgcaa 133452
>emb|AL596202.5| Human DNA sequence from clone RP11-477D19 on chromosome 6 Contains part of the TIAM2 gene for T-cell lymphoma invasion and metastasis 2 (SIF and Tiam 1-like exchange factor (STEF)), the 3' end of the TFB1M gene for transcription factor B1, mitochondrial (CGI-75 protein homolog of yeast mitochondrial transcription factor BCGI75 (mtTFB, CGI-75)) and a novel gene, complete sequence Length = 26282 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 349 atctggaggtttatcctgaccccct 373 |||||||||||||||||||| |||| Sbjct: 14653 atctggaggtttatcctgacgccct 14677
>gb|DQ159858.1| Uncultured bacterium clone hbC_H01 putative dissimilatory nitrite reductase (nirK) gene, partial cds Length = 423 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 296 ggacacgatcgaggccgccaagggc 320 ||||||||||||| ||||||||||| Sbjct: 138 ggacacgatcgagaccgccaagggc 162
>gb|DQ159787.1| Uncultured bacterium clone hbC_H2 putative dissimilatory nitrite reductase (nirK) gene, partial cds Length = 425 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 296 ggacacgatcgaggccgccaagggc 320 ||||||||||||| ||||||||||| Sbjct: 139 ggacacgatcgagaccgccaagggc 163
>gb|DQ159785.1| Uncultured bacterium clone hbC_G9 putative dissimilatory nitrite reductase (nirK) gene, partial cds Length = 425 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 296 ggacacgatcgaggccgccaagggc 320 ||||||||||||| ||||||||||| Sbjct: 139 ggacacgatcgagaccgccaagggc 163
>gb|DQ159784.1| Uncultured bacterium clone hbC_G12 putative dissimilatory nitrite reductase (nirK) gene, partial cds Length = 425 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 296 ggacacgatcgaggccgccaagggc 320 ||||||||||||| ||||||||||| Sbjct: 139 ggacacgatcgagaccgccaagggc 163
>gb|DQ159774.1| Uncultured bacterium clone hbC_E7 putative dissimilatory nitrite reductase (nirK) gene, partial cds Length = 425 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 296 ggacacgatcgaggccgccaagggc 320 ||||||||||||| ||||||||||| Sbjct: 139 ggacacgatcgagaccgccaagggc 163
>gb|DQ159771.1| Uncultured bacterium clone hbC_E2 putative dissimilatory nitrite reductase (nirK) gene, partial cds Length = 425 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 296 ggacacgatcgaggccgccaagggc 320 ||||||||||||| ||||||||||| Sbjct: 139 ggacacgatcgagaccgccaagggc 163
>gb|DQ159761.1| Uncultured bacterium clone hbC_C8 putative dissimilatory nitrite reductase (nirK) gene, partial cds Length = 425 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 296 ggacacgatcgaggccgccaagggc 320 ||||||||||||| ||||||||||| Sbjct: 139 ggacacgatcgagaccgccaagggc 163
>gb|DQ159759.1| Uncultured bacterium clone hbC_C2 putative dissimilatory nitrite reductase (nirK) gene, partial cds Length = 425 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 296 ggacacgatcgaggccgccaagggc 320 ||||||||||||| ||||||||||| Sbjct: 139 ggacacgatcgagaccgccaagggc 163
>gb|CP000081.1| Leishmania major chromosome 35, complete sequence Length = 2090491 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 60 caatccacgagcatgttgac 79 |||||||||||||||||||| Sbjct: 2077815 caatccacgagcatgttgac 2077796
>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome Length = 4403837 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 306 gaggccgccaagggcgtggc 325 |||||||||||||||||||| Sbjct: 422989 gaggccgccaagggcgtggc 423008
>ref|XM_838547.1| Leishmania major strain Friedlin hypothetical protein (LMJ_1467) partial mRNA Length = 19875 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 60 caatccacgagcatgttgac 79 |||||||||||||||||||| Sbjct: 8879 caatccacgagcatgttgac 8860
>ref|XM_539963.2| PREDICTED: Canis familiaris similar to Tumor necrosis factor receptor superfamily member 21 precursor (TNFR-related death receptor-6) (Death receptor 6) (LOC482848), mRNA Length = 1994 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 122 cgcggccgcaggaggggagc 141 |||||||||||||||||||| Sbjct: 49 cgcggccgcaggaggggagc 30
>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence Length = 3806533 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 293 caaggacacgatcgaggccg 312 |||||||||||||||||||| Sbjct: 3458692 caaggacacgatcgaggccg 3458673 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 304 tcgaggccgccaagggcgtg 323 |||||||||||||||||||| Sbjct: 2544158 tcgaggccgccaagggcgtg 2544139
>emb|X99543.1|DBRBORUB D.baarsii rbo & rub genes Length = 917 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 302 gatcgaggccgccaagggcgtggc 325 ||||||||||||||||| |||||| Sbjct: 496 gatcgaggccgccaaggtcgtggc 519
>emb|X58406.1|MTDNAGRP M.tuberculosis dnaK, grpE, and dnaJ genes Length = 4644 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 306 gaggccgccaagggcgtggc 325 |||||||||||||||||||| Sbjct: 3253 gaggccgccaagggcgtggc 3272
>emb|X06422.1|MTDNAJ M. tuberculosis dnaJ gene Length = 1116 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 306 gaggccgccaagggcgtggc 325 |||||||||||||||||||| Sbjct: 514 gaggccgccaagggcgtggc 533
>emb|BX842573.1| Mycobacterium tuberculosis H37Rv complete genome; segment 2/13 Length = 342416 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 306 gaggccgccaagggcgtggc 325 |||||||||||||||||||| Sbjct: 81022 gaggccgccaagggcgtggc 81041
>emb|BX248335.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 2/14 Length = 324050 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 306 gaggccgccaagggcgtggc 325 |||||||||||||||||||| Sbjct: 80958 gaggccgccaagggcgtggc 80977
>emb|AL663049.8| Mouse DNA sequence from clone RP23-198N8 on chromosome 11 Contains the Mor2 gene for soluble malate dehydrogenase, a novel gene, a phosphoglycerate mutase (Pgam) pseudogene and a CpG island, complete sequence Length = 203295 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 130 caggaggggagctggtcctc 149 |||||||||||||||||||| Sbjct: 168891 caggaggggagctggtcctc 168910
>gb|AY131229.2| Streptomyces sp. 139 exopolysaccharide gene cluster, complete sequence Length = 31310 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 190 aggtgctggagcacgccgag 209 |||||||||||||||||||| Sbjct: 9385 aggtgctggagcacgccgag 9404
>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome Length = 7074893 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 190 aggtgctggagcacgccgag 209 |||||||||||||||||||| Sbjct: 1694813 aggtgctggagcacgccgag 1694794
>gb|AE012226.1| Xanthomonas campestris pv. campestris str. ATCC 33913, section 134 of 460 of the complete genome Length = 11922 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 277 ccacggtggaggccggcaag 296 |||||||||||||||||||| Sbjct: 1833 ccacggtggaggccggcaag 1814
>gb|CP000133.1| Rhizobium etli CFN 42, complete genome Length = 4381608 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 224 ctcgtcgtcccctctcgcgc 243 |||||||||||||||||||| Sbjct: 1640857 ctcgtcgtcccctctcgcgc 1640838
>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome Length = 5148708 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 277 ccacggtggaggccggcaag 296 |||||||||||||||||||| Sbjct: 3561711 ccacggtggaggccggcaag 3561730
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 297 gacacgatcgaggccgccaagggc 320 |||||||||||||||| ||||||| Sbjct: 1540181 gacacgatcgaggccggcaagggc 1540204
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 185 cgggcaggtgctggagcacgccga 208 ||||||||||||||||| |||||| Sbjct: 114076 cgggcaggtgctggagctcgccga 114053
>gb|AC118614.12| Mus musculus chromosome 18, clone RP23-477B20, complete sequence Length = 159912 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 92 gctgagggggaaacccaaga 111 |||||||||||||||||||| Sbjct: 119960 gctgagggggaaacccaaga 119941 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,558,253 Number of Sequences: 3902068 Number of extensions: 2558253 Number of successful extensions: 43856 Number of sequences better than 10.0: 34 Number of HSP's better than 10.0 without gapping: 34 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 43333 Number of HSP's gapped (non-prelim): 522 length of query: 442 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 420 effective length of database: 17,147,199,772 effective search space: 7201823904240 effective search space used: 7201823904240 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)