ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | basd2k11 |
|---|---|
| Clone Library Name | barley_pub |
>WIR1A_WHEAT (Q01482) WIR1A protein| Length = 88 Score = 56.6 bits (135), Expect = 5e-08 Identities = 40/82 (48%), Positives = 46/82 (56%), Gaps = 8/82 (9%) Frame = +2 Query: 8 SMGFFARAARFLVLLQIALFVI-SAVIISGPVCNGARP-----GLGGGALDPGSPVCV-- 163 S+G A R VLLQIALFV+ +A+II+ VC GA G GALDP P Sbjct: 3 SLGSSAGGRRPTVLLQIALFVVVAAIIINSSVCLGATAVHDAAASGTGALDPNVPAVPTP 62 Query: 164 GGRCAPSGQPYTRPGCGTVYKC 229 GG +GQPYT GC TVY C Sbjct: 63 GG----AGQPYTGRGCRTVYGC 80
>WIR1B_WHEAT (Q01481) WIR1B protein| Length = 85 Score = 49.7 bits (117), Expect = 6e-06 Identities = 37/76 (48%), Positives = 41/76 (53%), Gaps = 7/76 (9%) Frame = +2 Query: 23 ARAARFLVLLQIALFV-ISAVIISGPVCNGAR----PGLGGGALDPGSPVCV--GGRCAP 181 A R L+ IALFV I+AVII+ VC GA G GALDP P GG Sbjct: 6 AAGRRPTALVHIALFVAIAAVIINSSVCLGAAVHDAATSGTGALDPNVPAVPTPGG---- 61 Query: 182 SGQPYTRPGCGTVYKC 229 +GQPYT GC TVY C Sbjct: 62 AGQPYTGRGCRTVYGC 77
>CSPG3_HUMAN (O14594) Neurocan core protein precursor (Chondroitin sulfate| proteoglycan 3) Length = 1321 Score = 33.5 bits (75), Expect = 0.46 Identities = 21/62 (33%), Positives = 30/62 (48%) Frame = -1 Query: 311 HASTPWECDYSIVGEAGSAGARAEHLVGTCTRCRTQGECRAGQMVRTVHRRTQDYRGPEH 132 HA+ ++C+ A+H V T RCR+ G+ Q+V T RR+ RG H Sbjct: 1237 HATVRYQCNEGF----------AQHHVVTI-RCRSNGKWDRPQIVCTKPRRSHRMRGHHH 1285 Query: 131 HH 126 HH Sbjct: 1286 HH 1287
>DNAJ_BRUOV (Q05980) Chaperone protein dnaJ| Length = 375 Score = 32.0 bits (71), Expect = 1.3 Identities = 19/55 (34%), Positives = 23/55 (41%) Frame = -1 Query: 326 RTRQSHASTPWECDYSIVGEAGSAGARAEHLVGTCTRCRTQGECRAGQMVRTVHR 162 +T Q T CD E +GA+ TCT C G CRA Q +V R Sbjct: 134 KTAQIRVPTSITCD-----ECSGSGAKPGSQPTTCTMCSGSGRCRAAQGFFSVER 183
>DGKQ_HUMAN (P52824) Diacylglycerol kinase theta (EC 2.7.1.107) (Diglyceride| kinase theta) (DGK-theta) (DAG kinase theta) Length = 942 Score = 32.0 bits (71), Expect = 1.3 Identities = 17/34 (50%), Positives = 18/34 (52%), Gaps = 5/34 (14%) Frame = +2 Query: 107 GARPGLGGGALDPGSPVC-----VGGRCAPSGQP 193 GAR LGGG+ PGSP C GGR P P Sbjct: 8 GARAWLGGGSPRPGSPACSPVLGSGGRARPGPGP 41
>CSPG3_PANTR (Q5IS41) Neurocan core protein precursor (Chondroitin sulfate| proteoglycan 3) Length = 1321 Score = 31.6 bits (70), Expect = 1.8 Identities = 20/62 (32%), Positives = 29/62 (46%) Frame = -1 Query: 311 HASTPWECDYSIVGEAGSAGARAEHLVGTCTRCRTQGECRAGQMVRTVHRRTQDYRGPEH 132 HA+ ++C+ A+H V T RCR+ G+ Q+V T RR+ R H Sbjct: 1237 HATVRYQCNEGF----------AQHHVATI-RCRSNGKWDRPQIVCTKPRRSHRMRRHHH 1285 Query: 131 HH 126 HH Sbjct: 1286 HH 1287
>SFR15_HUMAN (O95104) Splicing factor, arginine/serine-rich 15 (CTD-binding| SR-like protein RA4) Length = 1147 Score = 30.8 bits (68), Expect = 3.0 Identities = 15/33 (45%), Positives = 16/33 (48%) Frame = +2 Query: 107 GARPGLGGGALDPGSPVCVGGRCAPSGQPYTRP 205 G PGLGG PG P GR P QP +P Sbjct: 919 GGMPGLGGPGPGPGGPEDRDGRQQPPQQPQQQP 951
>POLG_MCFA (P33515) Genome polyprotein [Contains: Capsid protein C (Core| protein); Envelope protein M (Matrix protein); Major envelope protein E; Nonstructural protein 1 (NS1); Nonstructural protein 2A (NS2A); Flavivirin protease NS2B regulatory subunit; Length = 3341 Score = 30.4 bits (67), Expect = 3.9 Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 3/67 (4%) Frame = +3 Query: 138 WTPVVLCASVDGAHHLASPTLALGA---APCTSAHQVLSPSARRPRLPNNGVIALPRRGC 308 W V C+ HH +L G APC ++VL R RL GV+++ C Sbjct: 3143 WEKVEFCS-----HHYHEMSLKDGRIIIAPCRHENEVLG----RSRLQKGGVVSISESAC 3193 Query: 309 MALSCSQ 329 MA + +Q Sbjct: 3194 MAKAYAQ 3200
>GALT9_DROME (Q8MRC9) Putative polypeptide N-acetylgalactosaminyltransferase 9| (EC 2.4.1.41) (Protein-UDP acetylgalactosaminyltransferase 9) (UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase 9) (pp-GaNTase 9) Length = 650 Score = 30.0 bits (66), Expect = 5.1 Identities = 12/30 (40%), Positives = 19/30 (63%) Frame = +2 Query: 107 GARPGLGGGALDPGSPVCVGGRCAPSGQPY 196 G+ PG+GGGA G P+ + R P+G+ + Sbjct: 50 GSAPGVGGGAGGLGDPIALALRNEPAGEDF 79
>TTP_BOVIN (P53781) Tristetraproline (TTP) (Zinc finger protein 36 homolog)| (Zfp-36) (TIS11A protein) (TIS11) Length = 324 Score = 30.0 bits (66), Expect = 5.1 Identities = 13/50 (26%), Positives = 20/50 (40%) Frame = -1 Query: 275 VGEAGSAGARAEHLVGTCTRCRTQGECRAGQMVRTVHRRTQDYRGPEHHH 126 +GE A ++ C + QG C G +H ++D P H H Sbjct: 128 LGELRQASRHPKYKTELCHKFYLQGRCPYGSRCHFIHNPSEDLAAPGHPH 177
>RS3_LISMO (P66548) 30S ribosomal protein S3| Length = 218 Score = 29.6 bits (65), Expect = 6.7 Identities = 13/25 (52%), Positives = 16/25 (64%) Frame = -2 Query: 385 VRPHGMILGSV*DPDSNWYCEQDRA 311 V P GM +G + D DS WY E+D A Sbjct: 5 VHPIGMRIGVIRDWDSKWYAEKDYA 29
>RS3_LISMF (Q71WF2) 30S ribosomal protein S3| Length = 218 Score = 29.6 bits (65), Expect = 6.7 Identities = 13/25 (52%), Positives = 16/25 (64%) Frame = -2 Query: 385 VRPHGMILGSV*DPDSNWYCEQDRA 311 V P GM +G + D DS WY E+D A Sbjct: 5 VHPIGMRIGVIRDWDSKWYAEKDYA 29
>RS3_LISIN (P66549) 30S ribosomal protein S3| Length = 218 Score = 29.6 bits (65), Expect = 6.7 Identities = 13/25 (52%), Positives = 16/25 (64%) Frame = -2 Query: 385 VRPHGMILGSV*DPDSNWYCEQDRA 311 V P GM +G + D DS WY E+D A Sbjct: 5 VHPIGMRIGVIRDWDSKWYAEKDYA 29
>LAMA5_MOUSE (Q61001) Laminin alpha-5 chain precursor| Length = 3718 Score = 29.6 bits (65), Expect = 6.7 Identities = 16/42 (38%), Positives = 19/42 (45%) Frame = +2 Query: 89 SGPVCNGARPGLGGGALDPGSPVCVGGRCAPSGQPYTRPGCG 214 +GP C PG G AL PG+ C C+P G P G Sbjct: 2001 TGPHCERCAPGFYGNALLPGN--CTRCDCSPCGTETCDPQSG 2040
>COFD_MYCPA (Q73UJ4) LPPG:FO 2-phopspho-L-lactate transferase (EC 2.7.1.-)| Length = 337 Score = 29.6 bits (65), Expect = 6.7 Identities = 13/26 (50%), Positives = 16/26 (61%) Frame = +1 Query: 205 WVRHRVQVPTRCSALAPADPASPTME 282 WVR+R QVPT A A+ A+ T E Sbjct: 179 WVRYRAQVPTHSFAFVGAEKAAATTE 204
>CSPG3_RAT (P55067) Neurocan core protein precursor (Chondroitin sulfate| proteoglycan 3) (245 kDa early postnatal core glycoprotein) [Contains: 150 kDa adult core glycoprotein] Length = 1257 Score = 29.3 bits (64), Expect = 8.7 Identities = 19/61 (31%), Positives = 28/61 (45%) Frame = -1 Query: 311 HASTPWECDYSIVGEAGSAGARAEHLVGTCTRCRTQGECRAGQMVRTVHRRTQDYRGPEH 132 HA+ ++CD ++H V T RCR+ G+ Q+V T RR+ R H Sbjct: 1178 HATVRYQCDEGF----------SQHHVATI-RCRSNGKWDRPQIVCTKPRRSHRMRRHHH 1226 Query: 131 H 129 H Sbjct: 1227 H 1227
>UTS2_MACMU (Q8HYC2) Urotensin-2 precursor (Urotensin-II) (U-II) (UII)| Length = 125 Score = 29.3 bits (64), Expect = 8.7 Identities = 15/39 (38%), Positives = 20/39 (51%) Frame = +1 Query: 13 GVLRQSRAFPGAPPDRSLRHLCRDHQRPRLQRSTPRTRW 129 G LR+ + F G PD L HL ++P +R TP W Sbjct: 83 GNLRKFQDFSGQDPDILLSHLLARIRKPYKKRETPDCFW 121
>HSP1_RHIFE (Q8WNZ7) Sperm protamine P1| Length = 51 Score = 29.3 bits (64), Expect = 8.7 Identities = 17/38 (44%), Positives = 19/38 (50%), Gaps = 4/38 (10%) Frame = +1 Query: 76 CRDHQRPRL----QRSTPRTRWWCSGPR*SCVRRWTVR 177 CR H R R QR R R C R +C RR+TVR Sbjct: 6 CRSHSRSRSRRRRQRCRRRRRRSCGRRRRACYRRYTVR 43 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 91,544,473 Number of Sequences: 219361 Number of extensions: 1950313 Number of successful extensions: 5729 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 5294 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5713 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 5044307840 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
