ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd2k11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1WIR1A_WHEAT (Q01482) WIR1A protein 57 5e-08
2WIR1B_WHEAT (Q01481) WIR1B protein 50 6e-06
3CSPG3_HUMAN (O14594) Neurocan core protein precursor (Chondroiti... 33 0.46
4DNAJ_BRUOV (Q05980) Chaperone protein dnaJ 32 1.3
5DGKQ_HUMAN (P52824) Diacylglycerol kinase theta (EC 2.7.1.107) (... 32 1.3
6CSPG3_PANTR (Q5IS41) Neurocan core protein precursor (Chondroiti... 32 1.8
7SFR15_HUMAN (O95104) Splicing factor, arginine/serine-rich 15 (C... 31 3.0
8POLG_MCFA (P33515) Genome polyprotein [Contains: Capsid protein ... 30 3.9
9GALT9_DROME (Q8MRC9) Putative polypeptide N-acetylgalactosaminyl... 30 5.1
10TTP_BOVIN (P53781) Tristetraproline (TTP) (Zinc finger protein 3... 30 5.1
11RS3_LISMO (P66548) 30S ribosomal protein S3 30 6.7
12RS3_LISMF (Q71WF2) 30S ribosomal protein S3 30 6.7
13RS3_LISIN (P66549) 30S ribosomal protein S3 30 6.7
14LAMA5_MOUSE (Q61001) Laminin alpha-5 chain precursor 30 6.7
15COFD_MYCPA (Q73UJ4) LPPG:FO 2-phopspho-L-lactate transferase (EC... 30 6.7
16CSPG3_RAT (P55067) Neurocan core protein precursor (Chondroitin ... 29 8.7
17UTS2_MACMU (Q8HYC2) Urotensin-2 precursor (Urotensin-II) (U-II) ... 29 8.7
18HSP1_RHIFE (Q8WNZ7) Sperm protamine P1 29 8.7

>WIR1A_WHEAT (Q01482) WIR1A protein|
          Length = 88

 Score = 56.6 bits (135), Expect = 5e-08
 Identities = 40/82 (48%), Positives = 46/82 (56%), Gaps = 8/82 (9%)
 Frame = +2

Query: 8   SMGFFARAARFLVLLQIALFVI-SAVIISGPVCNGARP-----GLGGGALDPGSPVCV-- 163
           S+G  A   R  VLLQIALFV+ +A+II+  VC GA         G GALDP  P     
Sbjct: 3   SLGSSAGGRRPTVLLQIALFVVVAAIIINSSVCLGATAVHDAAASGTGALDPNVPAVPTP 62

Query: 164 GGRCAPSGQPYTRPGCGTVYKC 229
           GG    +GQPYT  GC TVY C
Sbjct: 63  GG----AGQPYTGRGCRTVYGC 80



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>WIR1B_WHEAT (Q01481) WIR1B protein|
          Length = 85

 Score = 49.7 bits (117), Expect = 6e-06
 Identities = 37/76 (48%), Positives = 41/76 (53%), Gaps = 7/76 (9%)
 Frame = +2

Query: 23  ARAARFLVLLQIALFV-ISAVIISGPVCNGAR----PGLGGGALDPGSPVCV--GGRCAP 181
           A   R   L+ IALFV I+AVII+  VC GA        G GALDP  P     GG    
Sbjct: 6   AAGRRPTALVHIALFVAIAAVIINSSVCLGAAVHDAATSGTGALDPNVPAVPTPGG---- 61

Query: 182 SGQPYTRPGCGTVYKC 229
           +GQPYT  GC TVY C
Sbjct: 62  AGQPYTGRGCRTVYGC 77



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>CSPG3_HUMAN (O14594) Neurocan core protein precursor (Chondroitin sulfate|
            proteoglycan 3)
          Length = 1321

 Score = 33.5 bits (75), Expect = 0.46
 Identities = 21/62 (33%), Positives = 30/62 (48%)
 Frame = -1

Query: 311  HASTPWECDYSIVGEAGSAGARAEHLVGTCTRCRTQGECRAGQMVRTVHRRTQDYRGPEH 132
            HA+  ++C+             A+H V T  RCR+ G+    Q+V T  RR+   RG  H
Sbjct: 1237 HATVRYQCNEGF----------AQHHVVTI-RCRSNGKWDRPQIVCTKPRRSHRMRGHHH 1285

Query: 131  HH 126
            HH
Sbjct: 1286 HH 1287



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>DNAJ_BRUOV (Q05980) Chaperone protein dnaJ|
          Length = 375

 Score = 32.0 bits (71), Expect = 1.3
 Identities = 19/55 (34%), Positives = 23/55 (41%)
 Frame = -1

Query: 326 RTRQSHASTPWECDYSIVGEAGSAGARAEHLVGTCTRCRTQGECRAGQMVRTVHR 162
           +T Q    T   CD     E   +GA+      TCT C   G CRA Q   +V R
Sbjct: 134 KTAQIRVPTSITCD-----ECSGSGAKPGSQPTTCTMCSGSGRCRAAQGFFSVER 183



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>DGKQ_HUMAN (P52824) Diacylglycerol kinase theta (EC 2.7.1.107) (Diglyceride|
           kinase theta) (DGK-theta) (DAG kinase theta)
          Length = 942

 Score = 32.0 bits (71), Expect = 1.3
 Identities = 17/34 (50%), Positives = 18/34 (52%), Gaps = 5/34 (14%)
 Frame = +2

Query: 107 GARPGLGGGALDPGSPVC-----VGGRCAPSGQP 193
           GAR  LGGG+  PGSP C      GGR  P   P
Sbjct: 8   GARAWLGGGSPRPGSPACSPVLGSGGRARPGPGP 41



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>CSPG3_PANTR (Q5IS41) Neurocan core protein precursor (Chondroitin sulfate|
            proteoglycan 3)
          Length = 1321

 Score = 31.6 bits (70), Expect = 1.8
 Identities = 20/62 (32%), Positives = 29/62 (46%)
 Frame = -1

Query: 311  HASTPWECDYSIVGEAGSAGARAEHLVGTCTRCRTQGECRAGQMVRTVHRRTQDYRGPEH 132
            HA+  ++C+             A+H V T  RCR+ G+    Q+V T  RR+   R   H
Sbjct: 1237 HATVRYQCNEGF----------AQHHVATI-RCRSNGKWDRPQIVCTKPRRSHRMRRHHH 1285

Query: 131  HH 126
            HH
Sbjct: 1286 HH 1287



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>SFR15_HUMAN (O95104) Splicing factor, arginine/serine-rich 15 (CTD-binding|
            SR-like protein RA4)
          Length = 1147

 Score = 30.8 bits (68), Expect = 3.0
 Identities = 15/33 (45%), Positives = 16/33 (48%)
 Frame = +2

Query: 107  GARPGLGGGALDPGSPVCVGGRCAPSGQPYTRP 205
            G  PGLGG    PG P    GR  P  QP  +P
Sbjct: 919  GGMPGLGGPGPGPGGPEDRDGRQQPPQQPQQQP 951



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>POLG_MCFA (P33515) Genome polyprotein [Contains: Capsid protein C (Core|
            protein); Envelope protein M (Matrix protein); Major
            envelope protein E; Nonstructural protein 1 (NS1);
            Nonstructural protein 2A (NS2A); Flavivirin protease NS2B
            regulatory subunit;
          Length = 3341

 Score = 30.4 bits (67), Expect = 3.9
 Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
 Frame = +3

Query: 138  WTPVVLCASVDGAHHLASPTLALGA---APCTSAHQVLSPSARRPRLPNNGVIALPRRGC 308
            W  V  C+     HH    +L  G    APC   ++VL     R RL   GV+++    C
Sbjct: 3143 WEKVEFCS-----HHYHEMSLKDGRIIIAPCRHENEVLG----RSRLQKGGVVSISESAC 3193

Query: 309  MALSCSQ 329
            MA + +Q
Sbjct: 3194 MAKAYAQ 3200



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>GALT9_DROME (Q8MRC9) Putative polypeptide N-acetylgalactosaminyltransferase 9|
           (EC 2.4.1.41) (Protein-UDP
           acetylgalactosaminyltransferase 9)
           (UDP-GalNAc:polypeptide
           N-acetylgalactosaminyltransferase 9) (pp-GaNTase 9)
          Length = 650

 Score = 30.0 bits (66), Expect = 5.1
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +2

Query: 107 GARPGLGGGALDPGSPVCVGGRCAPSGQPY 196
           G+ PG+GGGA   G P+ +  R  P+G+ +
Sbjct: 50  GSAPGVGGGAGGLGDPIALALRNEPAGEDF 79



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>TTP_BOVIN (P53781) Tristetraproline (TTP) (Zinc finger protein 36 homolog)|
           (Zfp-36) (TIS11A protein) (TIS11)
          Length = 324

 Score = 30.0 bits (66), Expect = 5.1
 Identities = 13/50 (26%), Positives = 20/50 (40%)
 Frame = -1

Query: 275 VGEAGSAGARAEHLVGTCTRCRTQGECRAGQMVRTVHRRTQDYRGPEHHH 126
           +GE   A    ++    C +   QG C  G     +H  ++D   P H H
Sbjct: 128 LGELRQASRHPKYKTELCHKFYLQGRCPYGSRCHFIHNPSEDLAAPGHPH 177



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>RS3_LISMO (P66548) 30S ribosomal protein S3|
          Length = 218

 Score = 29.6 bits (65), Expect = 6.7
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -2

Query: 385 VRPHGMILGSV*DPDSNWYCEQDRA 311
           V P GM +G + D DS WY E+D A
Sbjct: 5   VHPIGMRIGVIRDWDSKWYAEKDYA 29



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>RS3_LISMF (Q71WF2) 30S ribosomal protein S3|
          Length = 218

 Score = 29.6 bits (65), Expect = 6.7
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -2

Query: 385 VRPHGMILGSV*DPDSNWYCEQDRA 311
           V P GM +G + D DS WY E+D A
Sbjct: 5   VHPIGMRIGVIRDWDSKWYAEKDYA 29



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>RS3_LISIN (P66549) 30S ribosomal protein S3|
          Length = 218

 Score = 29.6 bits (65), Expect = 6.7
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -2

Query: 385 VRPHGMILGSV*DPDSNWYCEQDRA 311
           V P GM +G + D DS WY E+D A
Sbjct: 5   VHPIGMRIGVIRDWDSKWYAEKDYA 29



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>LAMA5_MOUSE (Q61001) Laminin alpha-5 chain precursor|
          Length = 3718

 Score = 29.6 bits (65), Expect = 6.7
 Identities = 16/42 (38%), Positives = 19/42 (45%)
 Frame = +2

Query: 89   SGPVCNGARPGLGGGALDPGSPVCVGGRCAPSGQPYTRPGCG 214
            +GP C    PG  G AL PG+  C    C+P G     P  G
Sbjct: 2001 TGPHCERCAPGFYGNALLPGN--CTRCDCSPCGTETCDPQSG 2040



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>COFD_MYCPA (Q73UJ4) LPPG:FO 2-phopspho-L-lactate transferase (EC 2.7.1.-)|
          Length = 337

 Score = 29.6 bits (65), Expect = 6.7
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +1

Query: 205 WVRHRVQVPTRCSALAPADPASPTME 282
           WVR+R QVPT   A   A+ A+ T E
Sbjct: 179 WVRYRAQVPTHSFAFVGAEKAAATTE 204



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>CSPG3_RAT (P55067) Neurocan core protein precursor (Chondroitin sulfate|
            proteoglycan 3) (245 kDa early postnatal core
            glycoprotein) [Contains: 150 kDa adult core glycoprotein]
          Length = 1257

 Score = 29.3 bits (64), Expect = 8.7
 Identities = 19/61 (31%), Positives = 28/61 (45%)
 Frame = -1

Query: 311  HASTPWECDYSIVGEAGSAGARAEHLVGTCTRCRTQGECRAGQMVRTVHRRTQDYRGPEH 132
            HA+  ++CD             ++H V T  RCR+ G+    Q+V T  RR+   R   H
Sbjct: 1178 HATVRYQCDEGF----------SQHHVATI-RCRSNGKWDRPQIVCTKPRRSHRMRRHHH 1226

Query: 131  H 129
            H
Sbjct: 1227 H 1227



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>UTS2_MACMU (Q8HYC2) Urotensin-2 precursor (Urotensin-II) (U-II) (UII)|
          Length = 125

 Score = 29.3 bits (64), Expect = 8.7
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +1

Query: 13  GVLRQSRAFPGAPPDRSLRHLCRDHQRPRLQRSTPRTRW 129
           G LR+ + F G  PD  L HL    ++P  +R TP   W
Sbjct: 83  GNLRKFQDFSGQDPDILLSHLLARIRKPYKKRETPDCFW 121



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>HSP1_RHIFE (Q8WNZ7) Sperm protamine P1|
          Length = 51

 Score = 29.3 bits (64), Expect = 8.7
 Identities = 17/38 (44%), Positives = 19/38 (50%), Gaps = 4/38 (10%)
 Frame = +1

Query: 76  CRDHQRPRL----QRSTPRTRWWCSGPR*SCVRRWTVR 177
           CR H R R     QR   R R  C   R +C RR+TVR
Sbjct: 6   CRSHSRSRSRRRRQRCRRRRRRSCGRRRRACYRRYTVR 43


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 91,544,473
Number of Sequences: 219361
Number of extensions: 1950313
Number of successful extensions: 5729
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 5294
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5713
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 5044307840
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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