>gb|M95500.1|WHTWIR1APR Wheat WIR1A gene, complete cds
          Length = 842

 Score = 48.1 bits (24), Expect = 0.033
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 43  ggtgctcctccagatcgctctcttcgtc 70
           ||||||||| ||||||||||||||||||
Sbjct: 200 ggtgctcctgcagatcgctctcttcgtc 227

>gb|AC155651.4| Mus musculus 6 BAC RP24-111E13 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 175599

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 307   gcatggctctgtcttgttcgca 328
             ||||||||||||||||||||||
Sbjct: 50266 gcatggctctgtcttgttcgca 50287

>gb|AC158664.5| Mus musculus 6 BAC RP23-24F17 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 232894

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 307    gcatggctctgtcttgttcgca 328
              ||||||||||||||||||||||
Sbjct: 216757 gcatggctctgtcttgttcgca 216736

>emb|AL513443.1|NC93G11 Neurospora crassa DNA linkage group V Cosmid contig 93G11
          Length = 86075

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 382   gcactgatatgaatgatggttcggt 406
             ||||||||||||||| |||||||||
Sbjct: 15721 gcactgatatgaatgttggttcggt 15697

>gb|AY664414.1| Zea mays cultivar B73 locus 9008, complete sequence
          Length = 339089

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 250   gcgcccgcagaccccgcctcc 270
             |||||||||||||||||||||
Sbjct: 89455 gcgcccgcagaccccgcctcc 89435

>gb|AC125235.3| Mus musculus BAC clone RP23-23D1 from chromosome 8, complete sequence
          Length = 191753

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 531   actctaggcatgaaggttgc 550
             ||||||||||||||||||||
Sbjct: 89084 actctaggcatgaaggttgc 89065

>ref|XM_547974.2| PREDICTED: Canis familiaris similar to CG32732-PA (LOC490852), mRNA
          Length = 2695

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 117  caggactcggtggtggtgctctgg 140
            ||||||| ||||||||||||||||
Sbjct: 2164 caggactgggtggtggtgctctgg 2187

>gb|AC003988.1| Homo sapiens PAC clone RP5-1171L6 from 7, complete sequence
          Length = 58725

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 433   catctagtatttgccaaaat 452
             ||||||||||||||||||||
Sbjct: 12338 catctagtatttgccaaaat 12357

>emb|BX572600.1| Rhodopseudomonas palustris CGA009 complete genome; segment 8/16
          Length = 349640

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 116    ccaggactcggtggtggtgc 135
              ||||||||||||||||||||
Sbjct: 236077 ccaggactcggtggtggtgc 236096

>gb|AF192304.6| Homo sapiens chromosome 8 clone CTC-458A3 map 8q24.3, complete sequence
          Length = 177028

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 440   tatttgccaaaataaagatg 459
             ||||||||||||||||||||
Sbjct: 50186 tatttgccaaaataaagatg 50205

>emb|AJ431203.1|NTO431203 Nicotiana tomentosiformis endogenous pararetrovirus partial
           proviral ORF3 & ORF4 pseudogenes
          Length = 1928

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 342 tcaggatcttatactgaacc 361
           ||||||||||||||||||||
Sbjct: 601 tcaggatcttatactgaacc 620


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,898,617
Number of Sequences: 3902068
Number of extensions: 3898617
Number of successful extensions: 86954
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 86932
Number of HSP's gapped (non-prelim): 22
length of query: 584
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 561
effective length of database: 17,143,297,704
effective search space: 9617390011944
effective search space used: 9617390011944
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)