Clone Name | basd2k09 |
---|---|
Clone Library Name | barley_pub |
>Y773_LISIN (Q92DP0) UPF0266 membrane protein lin0773| Length = 155 Score = 30.4 bits (67), Expect = 1.1 Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 10/68 (14%) Frame = +3 Query: 6 IHNSLGVGGLFSS---LALFWVVWXYLCFFEG-------VLFYFFNAIFPMAAXKSANAS 155 + N+ G FS+ LA+ V++ Y+CFF Y+ FP A + N S Sbjct: 61 VSNTFFREGPFSTSVLLAVMGVLFIYICFFRSSKAVFKETGLYYALLFFPYAKIERMNLS 120 Query: 156 EMGLMAIE 179 E G++ IE Sbjct: 121 EDGVLVIE 128
>NU2C_MESVI (Q9MUQ6) NAD(P)H-quinone oxidoreductase chain 2, chloroplast (EC| 1.6.5.-) (NAD(P)H dehydrogenase, chain 2) (NADH-plastoquinone oxidoreductase chain 2) Length = 502 Score = 30.0 bits (66), Expect = 1.4 Identities = 19/52 (36%), Positives = 22/52 (42%), Gaps = 9/52 (17%) Frame = +3 Query: 27 GGLFSSLALFWVVW---XYLCFFEGVL------FYFFNAIFPMAAXKSANAS 155 GG F L LFW W YL F G+L FY+ I M +S S Sbjct: 394 GGFFGKLYLFWAGWEAGSYLLVFVGLLTSVISIFYYIKIIKMMIIKESPEVS 445
>GD1L1_MOUSE (Q8VE33) Gangioside-induced differentiation-associated protein| 1-like 1 (GDAP1-L1) Length = 370 Score = 29.3 bits (64), Expect = 2.5 Identities = 12/34 (35%), Positives = 15/34 (44%) Frame = -2 Query: 243 SRCFWWKDSETGSQVEGTLGSPQWP*APSQMHWP 142 + C WW S S + +P P A S HWP Sbjct: 10 TNCSWWPISALESDAAKPVETPDAPEASSPAHWP 43
>HIS3_BORPE (Q7VSY5) Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) (PRA-CH)| Length = 134 Score = 28.9 bits (63), Expect = 3.2 Identities = 12/28 (42%), Positives = 16/28 (57%) Frame = -2 Query: 279 HLSSG*CCRTGRSRCFWWKDSETGSQVE 196 H + G C TGR+ CF+ + T SQ E Sbjct: 91 HQNGGIACHTGRASCFYRRLEGTASQAE 118
>HIS3_BORPA (Q7W2X8) Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) (PRA-CH)| Length = 134 Score = 28.9 bits (63), Expect = 3.2 Identities = 12/28 (42%), Positives = 16/28 (57%) Frame = -2 Query: 279 HLSSG*CCRTGRSRCFWWKDSETGSQVE 196 H + G C TGR+ CF+ + T SQ E Sbjct: 91 HQNGGIACHTGRASCFYRRLEGTASQAE 118
>HIS3_BORBR (Q7WDX8) Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) (PRA-CH)| Length = 134 Score = 28.9 bits (63), Expect = 3.2 Identities = 12/28 (42%), Positives = 16/28 (57%) Frame = -2 Query: 279 HLSSG*CCRTGRSRCFWWKDSETGSQVE 196 H + G C TGR+ CF+ + T SQ E Sbjct: 91 HQNGGIACHTGRASCFYRRLEGTASQAE 118
>SPAT7_MOUSE (Q80VP2) Spermatogenesis-associated protein 7 homolog| Length = 582 Score = 28.5 bits (62), Expect = 4.2 Identities = 18/59 (30%), Positives = 30/59 (50%) Frame = +3 Query: 189 RCPPPGIQSQNLSTRSTVTCLSDSISLMIDDFIAISGRRVMFTNSLGRILXAKTMMECA 365 R PP + + +LST+S C +DS SL + + + N +IL AK ++C+ Sbjct: 15 RYSPPCLFTGHLSTKSNAFC-TDSSSLRLSTLQLVKNHMAIHYN---KILSAKAAVDCS 69
>GD1L1_HUMAN (Q96MZ0) Ganglioside-induced differentiation-associated protein| 1-like 1 (GDAP1-L1) Length = 367 Score = 28.5 bits (62), Expect = 4.2 Identities = 12/34 (35%), Positives = 14/34 (41%) Frame = -2 Query: 243 SRCFWWKDSETGSQVEGTLGSPQWP*APSQMHWP 142 + C WW S S +P P A S HWP Sbjct: 10 TNCSWWPISALESDAAKPAEAPDAPEAASPAHWP 43
>NAGAB_CHICK (Q90744) Alpha-N-acetylgalactosaminidase (EC 3.2.1.49)| (Alpha-galactosidase B) Length = 405 Score = 28.1 bits (61), Expect = 5.5 Identities = 12/42 (28%), Positives = 19/42 (45%) Frame = -3 Query: 317 CKHDPSXRYSDKVIYHQADAVGQAGHGASGGKILRLDPRWRA 192 C+ DP S+ + AD + + G G K + +D W A Sbjct: 25 CREDPRQCISEMLFMEMADRIAEDGWRELGYKYINIDDCWAA 66
>ASP_ANCCA (Q16937) Ancylostoma secreted protein precursor| Length = 424 Score = 27.7 bits (60), Expect = 7.2 Identities = 14/39 (35%), Positives = 17/39 (43%) Frame = -3 Query: 347 FCXKDSXKGVCKHDPSXRYSDKVIYHQADAVGQAGHGAS 231 FC D GVC++ P Y VIY Q GA+ Sbjct: 376 FC-NDFTFGVCQYGPGGNYMGHVIYTMGQPCSQCSPGAT 413
>TRM10_YARLI (Q6C1W9) tRNA (guanine-N(1)-)-methyltransferase (EC 2.1.1.31) (tRNA| methyltransferase 10) Length = 371 Score = 27.3 bits (59), Expect = 9.3 Identities = 14/31 (45%), Positives = 20/31 (64%) Frame = +3 Query: 267 LMIDDFIAISGRRVMFTNSLGRILXAKTMME 359 L I DFI +SGR+V+ TN + IL T ++ Sbjct: 253 LPIADFIKLSGRKVLTTNHVFEILLKWTELK 283 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 46,579,408 Number of Sequences: 219361 Number of extensions: 798816 Number of successful extensions: 2267 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 2230 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2267 length of database: 80,573,946 effective HSP length: 97 effective length of database: 59,295,929 effective search space used: 1423102296 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)