ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd2k09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Y773_LISIN (Q92DP0) UPF0266 membrane protein lin0773 30 1.1
2NU2C_MESVI (Q9MUQ6) NAD(P)H-quinone oxidoreductase chain 2, chlo... 30 1.4
3GD1L1_MOUSE (Q8VE33) Gangioside-induced differentiation-associat... 29 2.5
4HIS3_BORPE (Q7VSY5) Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.... 29 3.2
5HIS3_BORPA (Q7W2X8) Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.... 29 3.2
6HIS3_BORBR (Q7WDX8) Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.... 29 3.2
7SPAT7_MOUSE (Q80VP2) Spermatogenesis-associated protein 7 homolog 28 4.2
8GD1L1_HUMAN (Q96MZ0) Ganglioside-induced differentiation-associa... 28 4.2
9NAGAB_CHICK (Q90744) Alpha-N-acetylgalactosaminidase (EC 3.2.1.4... 28 5.5
10ASP_ANCCA (Q16937) Ancylostoma secreted protein precursor 28 7.2
11TRM10_YARLI (Q6C1W9) tRNA (guanine-N(1)-)-methyltransferase (EC ... 27 9.3

>Y773_LISIN (Q92DP0) UPF0266 membrane protein lin0773|
          Length = 155

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 10/68 (14%)
 Frame = +3

Query: 6   IHNSLGVGGLFSS---LALFWVVWXYLCFFEG-------VLFYFFNAIFPMAAXKSANAS 155
           + N+    G FS+   LA+  V++ Y+CFF            Y+    FP A  +  N S
Sbjct: 61  VSNTFFREGPFSTSVLLAVMGVLFIYICFFRSSKAVFKETGLYYALLFFPYAKIERMNLS 120

Query: 156 EMGLMAIE 179
           E G++ IE
Sbjct: 121 EDGVLVIE 128



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>NU2C_MESVI (Q9MUQ6) NAD(P)H-quinone oxidoreductase chain 2, chloroplast (EC|
           1.6.5.-) (NAD(P)H dehydrogenase, chain 2)
           (NADH-plastoquinone oxidoreductase chain 2)
          Length = 502

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 19/52 (36%), Positives = 22/52 (42%), Gaps = 9/52 (17%)
 Frame = +3

Query: 27  GGLFSSLALFWVVW---XYLCFFEGVL------FYFFNAIFPMAAXKSANAS 155
           GG F  L LFW  W    YL  F G+L      FY+   I  M   +S   S
Sbjct: 394 GGFFGKLYLFWAGWEAGSYLLVFVGLLTSVISIFYYIKIIKMMIIKESPEVS 445



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>GD1L1_MOUSE (Q8VE33) Gangioside-induced differentiation-associated protein|
           1-like 1 (GDAP1-L1)
          Length = 370

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 12/34 (35%), Positives = 15/34 (44%)
 Frame = -2

Query: 243 SRCFWWKDSETGSQVEGTLGSPQWP*APSQMHWP 142
           + C WW  S   S     + +P  P A S  HWP
Sbjct: 10  TNCSWWPISALESDAAKPVETPDAPEASSPAHWP 43



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>HIS3_BORPE (Q7VSY5) Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) (PRA-CH)|
          Length = 134

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -2

Query: 279 HLSSG*CCRTGRSRCFWWKDSETGSQVE 196
           H + G  C TGR+ CF+ +   T SQ E
Sbjct: 91  HQNGGIACHTGRASCFYRRLEGTASQAE 118



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>HIS3_BORPA (Q7W2X8) Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) (PRA-CH)|
          Length = 134

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -2

Query: 279 HLSSG*CCRTGRSRCFWWKDSETGSQVE 196
           H + G  C TGR+ CF+ +   T SQ E
Sbjct: 91  HQNGGIACHTGRASCFYRRLEGTASQAE 118



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>HIS3_BORBR (Q7WDX8) Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) (PRA-CH)|
          Length = 134

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -2

Query: 279 HLSSG*CCRTGRSRCFWWKDSETGSQVE 196
           H + G  C TGR+ CF+ +   T SQ E
Sbjct: 91  HQNGGIACHTGRASCFYRRLEGTASQAE 118



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>SPAT7_MOUSE (Q80VP2) Spermatogenesis-associated protein 7 homolog|
          Length = 582

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 18/59 (30%), Positives = 30/59 (50%)
 Frame = +3

Query: 189 RCPPPGIQSQNLSTRSTVTCLSDSISLMIDDFIAISGRRVMFTNSLGRILXAKTMMECA 365
           R  PP + + +LST+S   C +DS SL +     +     +  N   +IL AK  ++C+
Sbjct: 15  RYSPPCLFTGHLSTKSNAFC-TDSSSLRLSTLQLVKNHMAIHYN---KILSAKAAVDCS 69



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>GD1L1_HUMAN (Q96MZ0) Ganglioside-induced differentiation-associated protein|
           1-like 1 (GDAP1-L1)
          Length = 367

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 12/34 (35%), Positives = 14/34 (41%)
 Frame = -2

Query: 243 SRCFWWKDSETGSQVEGTLGSPQWP*APSQMHWP 142
           + C WW  S   S       +P  P A S  HWP
Sbjct: 10  TNCSWWPISALESDAAKPAEAPDAPEAASPAHWP 43



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>NAGAB_CHICK (Q90744) Alpha-N-acetylgalactosaminidase (EC 3.2.1.49)|
           (Alpha-galactosidase B)
          Length = 405

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 12/42 (28%), Positives = 19/42 (45%)
 Frame = -3

Query: 317 CKHDPSXRYSDKVIYHQADAVGQAGHGASGGKILRLDPRWRA 192
           C+ DP    S+ +    AD + + G    G K + +D  W A
Sbjct: 25  CREDPRQCISEMLFMEMADRIAEDGWRELGYKYINIDDCWAA 66



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>ASP_ANCCA (Q16937) Ancylostoma secreted protein precursor|
          Length = 424

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 14/39 (35%), Positives = 17/39 (43%)
 Frame = -3

Query: 347 FCXKDSXKGVCKHDPSXRYSDKVIYHQADAVGQAGHGAS 231
           FC  D   GVC++ P   Y   VIY       Q   GA+
Sbjct: 376 FC-NDFTFGVCQYGPGGNYMGHVIYTMGQPCSQCSPGAT 413



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>TRM10_YARLI (Q6C1W9) tRNA (guanine-N(1)-)-methyltransferase (EC 2.1.1.31) (tRNA|
           methyltransferase 10)
          Length = 371

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = +3

Query: 267 LMIDDFIAISGRRVMFTNSLGRILXAKTMME 359
           L I DFI +SGR+V+ TN +  IL   T ++
Sbjct: 253 LPIADFIKLSGRKVLTTNHVFEILLKWTELK 283


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,579,408
Number of Sequences: 219361
Number of extensions: 798816
Number of successful extensions: 2267
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2230
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2267
length of database: 80,573,946
effective HSP length: 97
effective length of database: 59,295,929
effective search space used: 1423102296
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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