ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd2k01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_507134.1| PREDICTED Oryza sativa (japonica cultivar-group... 54 2e-04
2ref|XM_480154.1| Oryza sativa (japonica cultivar-group), mRNA 54 2e-04
3dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 54 2e-04
4dbj|AP003940.3| Oryza sativa (japonica cultivar-group) genomic D... 54 2e-04
5dbj|AK099134.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 2e-04
6dbj|AK070325.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 2e-04
7gb|AC009909.6| Drosophila melanogaster clone BACR30P05, complete... 44 0.17
8gb|AE003582.4| Drosophila melanogaster chromosome 2L, section 9 ... 44 0.17
9gb|AC005558.1|AC005558 Drosophila melanogaster DNA sequence (P1s... 44 0.17
10gb|AC161129.3| Pan troglodytes BAC clone CH251-332I16 from chrom... 40 2.7
11gb|AC006036.3| Homo sapiens BAC clone RP11-215P16 from 7, comple... 40 2.7
12ref|XM_763688.1| Giardia lamblia ATCC 50803 casein kinase (GLP_5... 40 2.7
13ref|XM_763689.1| Giardia lamblia ATCC 50803 hypothetical protein... 40 2.7
14gb|AC092981.3| Homo sapiens 3 BAC RP11-305I9 (Roswell Park Cance... 40 2.7
15ref|NM_058372.3| Caenorhabditis elegans Y18H1A.7 (Y18H1A.7) mRNA... 40 2.7
16gb|AC024751.2| Caenorhabditis elegans cosmid Y18H1A, complete se... 40 2.7
17gb|AC103897.3| Papio anubis clone RP41-461D5, complete sequence 40 2.7 
>ref|XM_507134.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1066_B03.125
           mRNA
          Length = 3327

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 45/52 (86%)
 Strand = Plus / Plus

                                                               
Query: 163 tgatgattcagaggatgagaaaccactngccngcaggttacccactantgct 214
           ||||||||||||||| || |||||||| ||| ||||||| || |||| ||||
Sbjct: 804 tgatgattcagaggacgataaaccactggccagcaggttgccaactaatgct 855



 Score = 42.1 bits (21), Expect = 0.69
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 163 tgatgattcagaggatgagaa 183
           |||||||||||||||||||||
Sbjct: 882 tgatgattcagaggatgagaa 902
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>ref|XM_480154.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3327

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 45/52 (86%)
 Strand = Plus / Plus

                                                               
Query: 163 tgatgattcagaggatgagaaaccactngccngcaggttacccactantgct 214
           ||||||||||||||| || |||||||| ||| ||||||| || |||| ||||
Sbjct: 804 tgatgattcagaggacgataaaccactggccagcaggttgccaactaatgct 855



 Score = 42.1 bits (21), Expect = 0.69
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 163 tgatgattcagaggatgagaa 183
           |||||||||||||||||||||
Sbjct: 882 tgatgattcagaggatgagaa 902
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 45/52 (86%)
 Strand = Plus / Plus

                                                                   
Query: 163     tgatgattcagaggatgagaaaccactngccngcaggttacccactantgct 214
               ||||||||||||||| || |||||||| ||| ||||||| || |||| ||||
Sbjct: 3131768 tgatgattcagaggacgataaaccactggccagcaggttgccaactaatgct 3131819



 Score = 42.1 bits (21), Expect = 0.69
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 163     tgatgattcagaggatgagaa 183
               |||||||||||||||||||||
Sbjct: 3131846 tgatgattcagaggatgagaa 3131866
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>dbj|AP003940.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1066_B03
          Length = 115339

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 45/52 (86%)
 Strand = Plus / Plus

                                                                 
Query: 163   tgatgattcagaggatgagaaaccactngccngcaggttacccactantgct 214
             ||||||||||||||| || |||||||| ||| ||||||| || |||| ||||
Sbjct: 91252 tgatgattcagaggacgataaaccactggccagcaggttgccaactaatgct 91303



 Score = 42.1 bits (21), Expect = 0.69
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 163   tgatgattcagaggatgagaa 183
             |||||||||||||||||||||
Sbjct: 91330 tgatgattcagaggatgagaa 91350
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>dbj|AK099134.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023050E19, full
           insert sequence
          Length = 3326

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 45/52 (86%)
 Strand = Plus / Plus

                                                               
Query: 163 tgatgattcagaggatgagaaaccactngccngcaggttacccactantgct 214
           ||||||||||||||| || |||||||| ||| ||||||| || |||| ||||
Sbjct: 804 tgatgattcagaggacgataaaccactggccagcaggttgccaactaatgct 855



 Score = 42.1 bits (21), Expect = 0.69
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 163 tgatgattcagaggatgagaa 183
           |||||||||||||||||||||
Sbjct: 882 tgatgattcagaggatgagaa 902
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>dbj|AK070325.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023050A13, full
           insert sequence
          Length = 3347

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 45/52 (86%)
 Strand = Plus / Plus

                                                               
Query: 163 tgatgattcagaggatgagaaaccactngccngcaggttacccactantgct 214
           ||||||||||||||| || |||||||| ||| ||||||| || |||| ||||
Sbjct: 824 tgatgattcagaggacgataaaccactggccagcaggttgccaactaatgct 875



 Score = 42.1 bits (21), Expect = 0.69
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 163 tgatgattcagaggatgagaa 183
           |||||||||||||||||||||
Sbjct: 902 tgatgattcagaggatgagaa 922
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>gb|AC009909.6| Drosophila melanogaster clone BACR30P05, complete sequence
          Length = 171772

 Score = 44.1 bits (22), Expect = 0.17
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 35     ctgatgatgatncatgatgatgatc 59
              ||||||||||| |||||||||||||
Sbjct: 100195 ctgatgatgattcatgatgatgatc 100219
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>gb|AE003582.4| Drosophila melanogaster chromosome 2L, section 9 of 83 of the complete
              sequence
          Length = 295132

 Score = 44.1 bits (22), Expect = 0.17
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 35     ctgatgatgatncatgatgatgatc 59
              ||||||||||| |||||||||||||
Sbjct: 123053 ctgatgatgattcatgatgatgatc 123077
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>gb|AC005558.1|AC005558 Drosophila melanogaster DNA sequence (P1s DS08923 (D95) and DS06400
              (D74)), complete sequence
          Length = 124700

 Score = 44.1 bits (22), Expect = 0.17
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 35     ctgatgatgatncatgatgatgatc 59
              ||||||||||| |||||||||||||
Sbjct: 118752 ctgatgatgattcatgatgatgatc 118728
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>gb|AC161129.3| Pan troglodytes BAC clone CH251-332I16 from chromosome 7, complete
             sequence
          Length = 172413

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 36    tgatgatgatncatgatgatgat 58
             |||||||||| ||||||||||||
Sbjct: 77023 tgatgatgattcatgatgatgat 77001
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>gb|AC006036.3| Homo sapiens BAC clone RP11-215P16 from 7, complete sequence
          Length = 156840

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 36    tgatgatgatncatgatgatgat 58
             |||||||||| ||||||||||||
Sbjct: 44366 tgatgatgattcatgatgatgat 44344
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>ref|XM_763688.1| Giardia lamblia ATCC 50803 casein kinase (GLP_59_40837_42042) partial
            mRNA
          Length = 1206

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 160  tgatgatgattcagaggatg 179
            ||||||||||||||||||||
Sbjct: 1053 tgatgatgattcagaggatg 1072
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>ref|XM_763689.1| Giardia lamblia ATCC 50803 hypothetical protein
           (GLP_59_41813_42076) partial mRNA
          Length = 264

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 160 tgatgatgattcagaggatg 179
           ||||||||||||||||||||
Sbjct: 77  tgatgatgattcagaggatg 96
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>gb|AC092981.3| Homo sapiens 3 BAC RP11-305I9 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 160000

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 166   tgattcagaggatgagaaac 185
             ||||||||||||||||||||
Sbjct: 22383 tgattcagaggatgagaaac 22402
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>ref|NM_058372.3| Caenorhabditis elegans Y18H1A.7 (Y18H1A.7) mRNA, complete cds
          Length = 1339

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 161 gatgatgattcagaggatga 180
           ||||||||||||||||||||
Sbjct: 203 gatgatgattcagaggatga 222
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>gb|AC024751.2| Caenorhabditis elegans cosmid Y18H1A, complete sequence
          Length = 89984

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 161   gatgatgattcagaggatga 180
             ||||||||||||||||||||
Sbjct: 48926 gatgatgattcagaggatga 48907
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>gb|AC103897.3| Papio anubis clone RP41-461D5, complete sequence
          Length = 156269

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 36     tgatgatgatncatgatgatgat 58
              |||||||||| ||||||||||||
Sbjct: 136519 tgatgatgattcatgatgatgat 136497


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,109,719
Number of Sequences: 3902068
Number of extensions: 1109719
Number of successful extensions: 67106
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 67047
Number of HSP's gapped (non-prelim): 59
length of query: 214
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 192
effective length of database: 17,147,199,772
effective search space: 3292262356224
effective search space used: 3292262356224
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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