ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd2j21 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BT009573.1| Triticum aestivum clone wre1n.pk0027.d4:fis, full insert mRNA sequence Length = 1042 Score = 363 bits (183), Expect = 4e-97 Identities = 198/203 (97%) Strand = Plus / Plus Query: 382 cagggattgaagagggaggccgtgctgcgtgctggccgcgtgttgtcgcgggcgatgctc 441 ||||| |||| |||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 8 caggggttgaggagggaggccgtgctgcgtgctggccgcgtgttgtcgcgggcaatgctg 67 Query: 442 ttcgtgttcgggttctactggatccccgtgtccgatcgaagcttccccaatgccgaggat 501 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 68 ttcgtgttcgggttctactggatccccgtgtccgatcgaagcttccccaatgccgaggat 127 Query: 502 gtacctaaagatcactctgaagaactggaaagaccaggggcgattgtatctaatcatgtg 561 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 128 gtacctaaagatcactatgaagaactggaaagaccaggggcgattgtatctaatcatgtg 187 Query: 562 tcatatgtggacattctttatca 584 ||||||||||||||||||||||| Sbjct: 188 tcatatgtggacattctttatca 210
>dbj|AK102755.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033107A02, full insert sequence Length = 2522 Score = 105 bits (53), Expect = 2e-19 Identities = 74/81 (91%) Strand = Plus / Plus Query: 269 tcctcctcccgctccgtctcatcgcagggatgctcctggtcgtcgcctactacctcgtgt 328 ||||| |||||||||| || |||| |||||||||||| ||||||||||||||||||||| Sbjct: 351 tcctcgtcccgctccggttcgtcgccgggatgctcctgctcgtcgcctactacctcgtgt 410 Query: 329 gccgtgtgtgcacgctgttcg 349 |||| |||||||||||||||| Sbjct: 411 gccgcgtgtgcacgctgttcg 431 Score = 71.9 bits (36), Expect = 2e-09 Identities = 75/88 (85%) Strand = Plus / Plus Query: 497 aggatgtacctaaagatcactctgaagaactggaaagaccaggggcgattgtatctaatc 556 ||||||||| | ||| ||| ||||||||| ||||| ||||||||| ||||| ||||||| Sbjct: 1655 aggatgtacatcaaggtcaatctgaagaattggaattaccaggggcaattgtgtctaatc 1714 Query: 557 atgtgtcatatgtggacattctttatca 584 | ||||| ||||| || ||||||||||| Sbjct: 1715 acgtgtcttatgtagatattctttatca 1742 Score = 65.9 bits (33), Expect = 1e-07 Identities = 63/73 (86%) Strand = Plus / Plus Query: 427 tcgcgggcgatgctcttcgtgttcgggttctactggatccccgtgtccgatcgaagcttc 486 |||||||| ||||||||||| ||||||||||||||||||| || | || | || |||| | Sbjct: 512 tcgcgggcaatgctcttcgtcttcgggttctactggatccgcgagacccaccggagctac 571 Query: 487 cccaatgccgagg 499 |||||||| |||| Sbjct: 572 cccaatgctgagg 584 Score = 60.0 bits (30), Expect = 9e-06 Identities = 48/54 (88%) Strand = Plus / Plus Query: 174 gtacgcgccctatgcgcgccgggatgcgtacgggccgatgggccgtgggccgct 227 |||||||||||| ||||| ||||| ||||||||| ||||||| || |||||||| Sbjct: 256 gtacgcgccctacgcgcggcgggacgcgtacgggacgatgggacgcgggccgct 309
>gb|AC104272.5| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1045_C06, complete sequence Length = 143130 Score = 69.9 bits (35), Expect = 9e-09 Identities = 44/47 (93%) Strand = Plus / Minus Query: 299 tgctcctggtcgtcgcctactacctcgtgtgccgtgtgtgcacgctg 345 ||||| || ||||||||||||||||||||||||| |||||||||||| Sbjct: 58866 tgctcgtgctcgtcgcctactacctcgtgtgccgcgtgtgcacgctg 58820 Score = 58.0 bits (29), Expect = 3e-05 Identities = 53/61 (86%) Strand = Plus / Minus Query: 521 aagaactggaaagaccaggggcgattgtatctaatcatgtgtcatatgtggacattcttt 580 ||||| ||| |||||||||||| | |||||||||||||| || |||||||| ||||||| Sbjct: 57622 aagaattgggaagaccaggggcagtagtatctaatcatgtatcttatgtggatattcttt 57563 Query: 581 a 581 | Sbjct: 57562 a 57562 Score = 46.1 bits (23), Expect = 0.13 Identities = 41/47 (87%) Strand = Plus / Minus Query: 172 aggtacgcgccctatgcgcgccgggatgcgtacgggccgatgggccg 218 ||||||||||| || ||| | ||||| ||||||||| |||||||||| Sbjct: 58993 aggtacgcgccgtacgcgaggcgggacgcgtacggggcgatgggccg 58947
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 69.9 bits (35), Expect = 9e-09 Identities = 44/47 (93%) Strand = Plus / Minus Query: 299 tgctcctggtcgtcgcctactacctcgtgtgccgtgtgtgcacgctg 345 ||||| || ||||||||||||||||||||||||| |||||||||||| Sbjct: 16846370 tgctcgtgctcgtcgcctactacctcgtgtgccgcgtgtgcacgctg 16846324 Score = 58.0 bits (29), Expect = 3e-05 Identities = 53/61 (86%) Strand = Plus / Minus Query: 521 aagaactggaaagaccaggggcgattgtatctaatcatgtgtcatatgtggacattcttt 580 ||||| ||| |||||||||||| | |||||||||||||| || |||||||| ||||||| Sbjct: 16845126 aagaattgggaagaccaggggcagtagtatctaatcatgtatcttatgtggatattcttt 16845067 Query: 581 a 581 | Sbjct: 16845066 a 16845066 Score = 46.1 bits (23), Expect = 0.13 Identities = 41/47 (87%) Strand = Plus / Minus Query: 172 aggtacgcgccctatgcgcgccgggatgcgtacgggccgatgggccg 218 ||||||||||| || ||| | ||||| ||||||||| |||||||||| Sbjct: 16846497 aggtacgcgccgtacgcgaggcgggacgcgtacggggcgatgggccg 16846451 Score = 40.1 bits (20), Expect = 7.9 Identities = 29/32 (90%) Strand = Plus / Plus Query: 257 tcgccggcgtcgtcctcctcccgctccgtctc 288 |||||| |||||||||||| ||||||| |||| Sbjct: 6125381 tcgccgtcgtcgtcctccttccgctccttctc 6125412
>gb|AY111650.1| Zea mays CL15598_1 mRNA sequence Length = 920 Score = 69.9 bits (35), Expect = 9e-09 Identities = 50/55 (90%) Strand = Plus / Minus Query: 530 aaagaccaggggcgattgtatctaatcatgtgtcatatgtggacattctttatca 584 |||| |||||||| ||||||||||||||||| || |||||||| ||||||||||| Sbjct: 825 aaaggccaggggcaattgtatctaatcatgtctcttatgtggatattctttatca 771 Score = 56.0 bits (28), Expect = 1e-04 Identities = 31/32 (96%) Strand = Plus / Minus Query: 435 gatgctcttcgtgttcgggttctactggatcc 466 |||||||||||| ||||||||||||||||||| Sbjct: 920 gatgctcttcgtcttcgggttctactggatcc 889
>dbj|AK060514.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-019-F05, full insert sequence Length = 1500 Score = 69.9 bits (35), Expect = 9e-09 Identities = 44/47 (93%) Strand = Plus / Plus Query: 299 tgctcctggtcgtcgcctactacctcgtgtgccgtgtgtgcacgctg 345 ||||| || ||||||||||||||||||||||||| |||||||||||| Sbjct: 349 tgctcgtgctcgtcgcctactacctcgtgtgccgcgtgtgcacgctg 395 Score = 58.0 bits (29), Expect = 3e-05 Identities = 53/61 (86%) Strand = Plus / Plus Query: 521 aagaactggaaagaccaggggcgattgtatctaatcatgtgtcatatgtggacattcttt 580 ||||| ||| |||||||||||| | |||||||||||||| || |||||||| ||||||| Sbjct: 613 aagaattgggaagaccaggggcagtagtatctaatcatgtatcttatgtggatattcttt 672 Query: 581 a 581 | Sbjct: 673 a 673 Score = 46.1 bits (23), Expect = 0.13 Identities = 41/47 (87%) Strand = Plus / Plus Query: 172 aggtacgcgccctatgcgcgccgggatgcgtacgggccgatgggccg 218 ||||||||||| || ||| | ||||| ||||||||| |||||||||| Sbjct: 222 aggtacgcgccgtacgcgaggcgggacgcgtacggggcgatgggccg 268
>gb|AY105792.1| Zea mays PCO111792 mRNA sequence Length = 1502 Score = 56.0 bits (28), Expect = 1e-04 Identities = 49/56 (87%) Strand = Plus / Plus Query: 529 gaaagaccaggggcgattgtatctaatcatgtgtcatatgtggacattctttatca 584 ||||| || ||||| ||||| ||||||||||| || |||||||| ||||||||||| Sbjct: 620 gaaaggcctggggcaattgtgtctaatcatgtatcttatgtggatattctttatca 675 Score = 54.0 bits (27), Expect = 5e-04 Identities = 30/31 (96%) Strand = Plus / Plus Query: 315 ctactacctcgtgtgccgtgtgtgcacgctg 345 |||||||||||||||||| |||||||||||| Sbjct: 391 ctactacctcgtgtgccgcgtgtgcacgctg 421
>ref|NM_197341.1| Oryza sativa (japonica cultivar-group) putative cytochrome P450 (OSJNBa0026L12.6), mRNA Length = 1539 Score = 48.1 bits (24), Expect = 0.033 Identities = 27/28 (96%) Strand = Plus / Plus Query: 256 ctcgccggcgtcgtcctcctcccgctcc 283 |||||||||||| ||||||||||||||| Sbjct: 19 ctcgccggcgtcctcctcctcccgctcc 46
>gb|AC068924.11| Oryza sativa chromosome 10 BAC OSJNBa0026L12 genomic sequence, complete sequence Length = 152172 Score = 48.1 bits (24), Expect = 0.033 Identities = 27/28 (96%) Strand = Plus / Plus Query: 256 ctcgccggcgtcgtcctcctcccgctcc 283 |||||||||||| ||||||||||||||| Sbjct: 37391 ctcgccggcgtcctcctcctcccgctcc 37418
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 48.1 bits (24), Expect = 0.033 Identities = 27/28 (96%) Strand = Plus / Minus Query: 256 ctcgccggcgtcgtcctcctcccgctcc 283 |||||||||||| ||||||||||||||| Sbjct: 19338990 ctcgccggcgtcctcctcctcccgctcc 19338963 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Plus Query: 256 ctcgccggcgtcgtcctcctcc 277 |||||||||||||||||||||| Sbjct: 14047208 ctcgccggcgtcgtcctcctcc 14047229 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 91 ggcggcgatggcggtggaga 110 |||||||||||||||||||| Sbjct: 21853943 ggcggcgatggcggtggaga 21853962
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 48.1 bits (24), Expect = 0.033 Identities = 27/28 (96%) Strand = Plus / Minus Query: 256 ctcgccggcgtcgtcctcctcccgctcc 283 |||||||||||| ||||||||||||||| Sbjct: 19350266 ctcgccggcgtcctcctcctcccgctcc 19350239 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Plus Query: 256 ctcgccggcgtcgtcctcctcc 277 |||||||||||||||||||||| Sbjct: 14055450 ctcgccggcgtcgtcctcctcc 14055471 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 91 ggcggcgatggcggtggaga 110 |||||||||||||||||||| Sbjct: 21865606 ggcggcgatggcggtggaga 21865625
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 46.1 bits (23), Expect = 0.13 Identities = 29/31 (93%) Strand = Plus / Minus Query: 253 gtgctcgccggcgtcgtcctcctcccgctcc 283 ||||||| |||||||||||| |||||||||| Sbjct: 4020502 gtgctcgacggcgtcgtcctactcccgctcc 4020472 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 301 ctcctggtcgtcgcctactacctcg 325 ||||||||||||||| ||||||||| Sbjct: 1833464 ctcctggtcgtcgccgactacctcg 1833440
>gb|AC090484.4| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0061L19, from chromosome 3, complete sequence Length = 153322 Score = 46.1 bits (23), Expect = 0.13 Identities = 29/31 (93%) Strand = Plus / Plus Query: 253 gtgctcgccggcgtcgtcctcctcccgctcc 283 ||||||| |||||||||||| |||||||||| Sbjct: 78866 gtgctcgacggcgtcgtcctactcccgctcc 78896
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Plus Query: 255 gctcgccggcgtcgtcctcctcc 277 ||||||||||||||||||||||| Sbjct: 18194337 gctcgccggcgtcgtcctcctcc 18194359 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 264 cgtcgtcctcctcccgctccg 284 ||||||||||||||||||||| Sbjct: 18333464 cgtcgtcctcctcccgctccg 18333444
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 46.1 bits (23), Expect = 0.13 Identities = 29/31 (93%) Strand = Plus / Minus Query: 253 gtgctcgccggcgtcgtcctcctcccgctcc 283 ||||||| |||||||||||| |||||||||| Sbjct: 4020613 gtgctcgacggcgtcgtcctactcccgctcc 4020583 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 301 ctcctggtcgtcgcctactacctcg 325 ||||||||||||||| ||||||||| Sbjct: 1833462 ctcctggtcgtcgccgactacctcg 1833438
>dbj|AP005759.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0556A05 Length = 158189 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Plus Query: 255 gctcgccggcgtcgtcctcctcc 277 ||||||||||||||||||||||| Sbjct: 43061 gctcgccggcgtcgtcctcctcc 43083
>dbj|AK109502.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-208-A02, full insert sequence Length = 1169 Score = 46.1 bits (23), Expect = 0.13 Identities = 29/31 (93%) Strand = Plus / Plus Query: 253 gtgctcgccggcgtcgtcctcctcccgctcc 283 ||||||| |||||||||||| |||||||||| Sbjct: 684 gtgctcgacggcgtcgtcctactcccgctcc 714
>ref|NM_196495.1| Oryza sativa (japonica cultivar-group) putative beta-ketoacyl-CoA synthase (OSJNBa0032I20.8), mRNA Length = 1572 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Minus Query: 256 ctcgccggcgtcgtcctcctcc 277 |||||||||||||||||||||| Sbjct: 1011 ctcgccggcgtcgtcctcctcc 990
>gb|AF229187.1|AF229187 Oryza sativa subsp. japonica BAC clone nbxb0032I20, complete sequence Length = 144651 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Plus Query: 256 ctcgccggcgtcgtcctcctcc 277 |||||||||||||||||||||| Sbjct: 63337 ctcgccggcgtcgtcctcctcc 63358
>dbj|AK073016.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023149L14, full insert sequence Length = 1040 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Minus Query: 256 ctcgccggcgtcgtcctcctcc 277 |||||||||||||||||||||| Sbjct: 282 ctcgccggcgtcgtcctcctcc 261
>gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome Length = 7215267 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Plus Query: 59 acaccaccaccgccgcgccttc 80 |||||||||||||||||||||| Sbjct: 3625282 acaccaccaccgccgcgccttc 3625303
>gb|AC140005.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJA1004C08, complete sequence Length = 138054 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 301 ctcctggtcgtcgcctactacctcg 325 ||||||||||||||| ||||||||| Sbjct: 58326 ctcctggtcgtcgccgactacctcg 58302
>ref|NM_184033.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2403 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 91 ggcggcgatggcggtggagag 111 ||||||||||||||||||||| Sbjct: 87 ggcggcgatggcggtggagag 67
>ref|XM_478415.1| Oryza sativa (japonica cultivar-group), mRNA Length = 888 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 257 tcgccggcgtcgtcctcctcc 277 ||||||||||||||||||||| Sbjct: 583 tcgccggcgtcgtcctcctcc 563
>gb|AE009373.1| Agrobacterium tumefaciens str. C58 linear chromosome, section 143 of 187 of the complete sequence Length = 13358 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 91 ggcggcgatggcggtggagag 111 ||||||||||||||||||||| Sbjct: 1317 ggcggcgatggcggtggagag 1297
>gb|AE008241.1| Agrobacterium tumefaciens str. C58 linear chromosome, section 45 of 187 of the complete sequence Length = 10465 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 91 ggcggcgatggcggtggagag 111 ||||||||||||||||||||| Sbjct: 9149 ggcggcgatggcggtggagag 9169
>ref|XM_970460.1| PREDICTED: Tribolium castaneum similar to CG5977-PA, isoform A (LOC664454), mRNA Length = 2237 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 60 caccaccaccgccgcgccttc 80 ||||||||||||||||||||| Sbjct: 391 caccaccaccgccgcgccttc 411
>gb|AC098693.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1004C08, complete sequence Length = 133090 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 301 ctcctggtcgtcgcctactacctcg 325 ||||||||||||||| ||||||||| Sbjct: 898 ctcctggtcgtcgccgactacctcg 922
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 257 tcgccggcgtcgtcctcctcc 277 ||||||||||||||||||||| Sbjct: 19834121 tcgccggcgtcgtcctcctcc 19834141
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 91 ggcggcgatggcggtggagag 111 ||||||||||||||||||||| Sbjct: 14042634 ggcggcgatggcggtggagag 14042614 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 90 aggcggcgatggcggtggagaggc 113 |||||||| ||||||||||||||| Sbjct: 3786370 aggcggcggtggcggtggagaggc 3786393
>gb|AC103777.14| Homo sapiens chromosome 8, clone RP11-460G23, complete sequence Length = 164588 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 11 tctcggcttcccgtctctctc 31 ||||||||||||||||||||| Sbjct: 130940 tctcggcttcccgtctctctc 130920
>dbj|AP005633.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0463G11 Length = 154188 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 264 cgtcgtcctcctcccgctccg 284 ||||||||||||||||||||| Sbjct: 48200 cgtcgtcctcctcccgctccg 48180
>dbj|AP003764.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1051E10 Length = 207782 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 91 ggcggcgatggcggtggagag 111 ||||||||||||||||||||| Sbjct: 202936 ggcggcgatggcggtggagag 202916
>dbj|AP003258.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0463A02 Length = 151041 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 91 ggcggcgatggcggtggagag 111 ||||||||||||||||||||| Sbjct: 118379 ggcggcgatggcggtggagag 118359
>dbj|AP005320.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0650C03 Length = 144337 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 257 tcgccggcgtcgtcctcctcc 277 ||||||||||||||||||||| Sbjct: 74280 tcgccggcgtcgtcctcctcc 74300
>dbj|AK104997.2| Oryza sativa (japonica cultivar-group) cDNA clone:001-003-D10, full insert sequence Length = 1879 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 301 ctcctggtcgtcgcctactacctcg 325 ||||||||||||||| ||||||||| Sbjct: 100 ctcctggtcgtcgccgactacctcg 76
>dbj|AK122069.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033117I10, full insert sequence Length = 1944 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 301 ctcctggtcgtcgcctactacctcg 325 ||||||||||||||| ||||||||| Sbjct: 105 ctcctggtcgtcgccgactacctcg 81
>dbj|AK109596.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-137-D05, full insert sequence Length = 2103 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 264 cgtcgtcctcctcccgctccg 284 ||||||||||||||||||||| Sbjct: 643 cgtcgtcctcctcccgctccg 623
>dbj|AK102963.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033115I11, full insert sequence Length = 3046 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 91 ggcggcgatggcggtggagag 111 ||||||||||||||||||||| Sbjct: 158 ggcggcgatggcggtggagag 138
>dbj|AK102726.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033105M03, full insert sequence Length = 938 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 257 tcgccggcgtcgtcctcctcc 277 ||||||||||||||||||||| Sbjct: 587 tcgccggcgtcgtcctcctcc 567
>dbj|AK069570.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023025A03, full insert sequence Length = 889 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 257 tcgccggcgtcgtcctcctcc 277 ||||||||||||||||||||| Sbjct: 584 tcgccggcgtcgtcctcctcc 564
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 50 tggccgtcgacaccaccaccg 70 ||||||||||||||||||||| Sbjct: 2726203 tggccgtcgacaccaccaccg 2726183
>gb|AY955493.2| Triticum aestivum Dof1 mRNA, complete cds Length = 1000 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 263 gcgtcgtcctcctcccgctcc 283 ||||||||||||||||||||| Sbjct: 477 gcgtcgtcctcctcccgctcc 497
>ref|XM_476103.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 840 Score = 40.1 bits (20), Expect = 7.9 Identities = 29/32 (90%) Strand = Plus / Plus Query: 257 tcgccggcgtcgtcctcctcccgctccgtctc 288 |||||| |||||||||||| ||||||| |||| Sbjct: 286 tcgccgtcgtcgtcctccttccgctccttctc 317
>gb|AC136520.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0017O06, complete sequence Length = 151656 Score = 40.1 bits (20), Expect = 7.9 Identities = 29/32 (90%) Strand = Plus / Plus Query: 257 tcgccggcgtcgtcctcctcccgctccgtctc 288 |||||| |||||||||||| ||||||| |||| Sbjct: 72950 tcgccgtcgtcgtcctccttccgctccttctc 72981
>gb|AC136519.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0007C23, complete sequence Length = 173764 Score = 40.1 bits (20), Expect = 7.9 Identities = 29/32 (90%) Strand = Plus / Plus Query: 257 tcgccggcgtcgtcctcctcccgctccgtctc 288 |||||| |||||||||||| ||||||| |||| Sbjct: 172934 tcgccgtcgtcgtcctccttccgctccttctc 172965
>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome Length = 2584158 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 253 gtgctcgccggcgtcgtcctcctc 276 ||||||||||||||||||| |||| Sbjct: 2424308 gtgctcgccggcgtcgtccgcctc 2424285
>ref|XM_742269.1| Aspergillus fumigatus Af293 cell wall glucanase (Afu8g05610) partial mRNA Length = 1851 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 58 gacaccaccaccgccgcgccttcc 81 |||||||||||||||| ||||||| Sbjct: 988 gacaccaccaccgccgtgccttcc 1011
>emb|CR376790.8| Zebrafish DNA sequence from clone DKEY-148F2 in linkage group 1, complete sequence Length = 129495 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 16 gcttcccgtctctctcactc 35 |||||||||||||||||||| Sbjct: 74832 gcttcccgtctctctcactc 74851
>gb|AC010060.10| Drosophila melanogaster 3L BAC RP98-22J22 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 200985 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 96 cgatggcggtggagaggcag 115 |||||||||||||||||||| Sbjct: 147107 cgatggcggtggagaggcag 147126
>gb|AC093497.2| Drosophila melanogaster 3L BAC RP98-1H12 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 170071 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 96 cgatggcggtggagaggcag 115 |||||||||||||||||||| Sbjct: 9496 cgatggcggtggagaggcag 9515
>gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome Length = 2932766 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 260 ccggcgtcgtcctcctcccgctcc 283 ||||||||| |||||||||||||| Sbjct: 1708963 ccggcgtcggcctcctcccgctcc 1708940
>gb|AE005710.1| Caulobacter crescentus CB15 section 36 of 359 of the complete genome Length = 11283 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 85 cctgaaggcggcgatggcgg 104 |||||||||||||||||||| Sbjct: 11157 cctgaaggcggcgatggcgg 11176
>gb|AE012313.1| Xanthomonas campestris pv. campestris str. ATCC 33913, section 221 of 460 of the complete genome Length = 12227 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 91 ggcggcgatggcggtggaga 110 |||||||||||||||||||| Sbjct: 9617 ggcggcgatggcggtggaga 9598 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 91 ggcggcgatggcggtggaga 110 |||||||||||||||||||| Sbjct: 3691 ggcggcgatggcggtggaga 3710
>ref|NM_140471.1| Drosophila melanogaster CG13467-RA (CG13467), mRNA Length = 891 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 96 cgatggcggtggagaggcag 115 |||||||||||||||||||| Sbjct: 69 cgatggcggtggagaggcag 88
>gb|AC087599.14| Oryza sativa chromosome 10 BAC OSJNBa0057L21 genomic sequence, complete sequence Length = 183046 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 91 ggcggcgatggcggtggaga 110 |||||||||||||||||||| Sbjct: 154378 ggcggcgatggcggtggaga 154359
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 206 ggccgatgggccgtgggccg 225 |||||||||||||||||||| Sbjct: 1062256 ggccgatgggccgtgggccg 1062275
>gb|AC109243.10| Mus musculus chromosome 18, clone RP23-139O19, complete sequence Length = 186687 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 61 accaccaccgccgcgccttc 80 |||||||||||||||||||| Sbjct: 56012 accaccaccgccgcgccttc 56031
>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome Length = 5148708 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 91 ggcggcgatggcggtggaga 110 |||||||||||||||||||| Sbjct: 2534513 ggcggcgatggcggtggaga 2534532
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 51 ggccgtcgacaccaccaccgccgc 74 ||||| |||||||||||||||||| Sbjct: 17264608 ggccgccgacaccaccaccgccgc 17264631
>dbj|AP003215.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0089K24 Length = 154137 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 90 aggcggcgatggcggtggagaggc 113 |||||||| ||||||||||||||| Sbjct: 59912 aggcggcggtggcggtggagaggc 59935
>dbj|AP005298.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1770_H03 Length = 189893 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 51 ggccgtcgacaccaccaccgccgc 74 ||||| |||||||||||||||||| Sbjct: 125233 ggccgccgacaccaccaccgccgc 125256
>dbj|AK107675.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-132-A01, full insert sequence Length = 1540 Score = 40.1 bits (20), Expect = 7.9 Identities = 29/32 (90%) Strand = Plus / Plus Query: 257 tcgccggcgtcgtcctcctcccgctccgtctc 288 |||||| |||||||||||| ||||||| |||| Sbjct: 430 tcgccgtcgtcgtcctccttccgctccttctc 461
>gb|AE003533.4| Drosophila melanogaster chromosome 3L, section 52 of 83 of the complete sequence Length = 289141 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 96 cgatggcggtggagaggcag 115 |||||||||||||||||||| Sbjct: 271663 cgatggcggtggagaggcag 271682
>gb|U10884.1|BPU10884 Bacteriophage phi-Lf adsorption protein (III) gene, complete cds Length = 1171 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 91 ggcggcgatggcggtggaga 110 |||||||||||||||||||| Sbjct: 710 ggcggcgatggcggtggaga 729
>emb|AL929258.15| Mouse DNA sequence from clone RP23-351N6 on chromosome 4, complete sequence Length = 68850 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 376 cgcctacagggattgaagag 395 |||||||||||||||||||| Sbjct: 41606 cgcctacagggattgaagag 41587 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,418,910 Number of Sequences: 3902068 Number of extensions: 3418910 Number of successful extensions: 77689 Number of sequences better than 10.0: 66 Number of HSP's better than 10.0 without gapping: 72 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 76060 Number of HSP's gapped (non-prelim): 1629 length of query: 584 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 561 effective length of database: 17,143,297,704 effective search space: 9617390011944 effective search space used: 9617390011944 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
