ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd2j21
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|BT009573.1| Triticum aestivum clone wre1n.pk0027.d4:fis, full... 363 4e-97
2dbj|AK102755.1| Oryza sativa (japonica cultivar-group) cDNA clon... 105 2e-19
3gb|AC104272.5| Oryza sativa (japonica cultivar-group) chromosome... 70 9e-09
4dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 70 9e-09
5gb|AY111650.1| Zea mays CL15598_1 mRNA sequence 70 9e-09
6dbj|AK060514.1| Oryza sativa (japonica cultivar-group) cDNA clon... 70 9e-09
7gb|AY105792.1| Zea mays PCO111792 mRNA sequence 56 1e-04
8ref|NM_197341.1| Oryza sativa (japonica cultivar-group) putative... 48 0.033
9gb|AC068924.11| Oryza sativa chromosome 10 BAC OSJNBa0026L12 gen... 48 0.033
10dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.033
11gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 48 0.033
12gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 46 0.13
13gb|AC090484.4| Genomic sequence for Oryza sativa, Nipponbare str... 46 0.13
14dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.13
15dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.13
16dbj|AP005759.3| Oryza sativa (japonica cultivar-group) genomic D... 46 0.13
17dbj|AK109502.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.13
18ref|NM_196495.1| Oryza sativa (japonica cultivar-group) putative... 44 0.51
19gb|AF229187.1|AF229187 Oryza sativa subsp. japonica BAC clone nb... 44 0.51
20dbj|AK073016.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.51
21gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome 44 0.51
22gb|AC140005.2| Oryza sativa (japonica cultivar-group) chromosome... 42 2.0
23ref|NM_184033.1| Oryza sativa (japonica cultivar-group), predic... 42 2.0
24ref|XM_478415.1| Oryza sativa (japonica cultivar-group), mRNA 42 2.0
25gb|AE009373.1| Agrobacterium tumefaciens str. C58 linear chromos... 42 2.0
26gb|AE008241.1| Agrobacterium tumefaciens str. C58 linear chromos... 42 2.0
27ref|XM_970460.1| PREDICTED: Tribolium castaneum similar to CG597... 42 2.0
28gb|AC098693.2| Oryza sativa (japonica cultivar-group) chromosome... 42 2.0
29dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.0
30dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.0
31gb|AC103777.14| Homo sapiens chromosome 8, clone RP11-460G23, co... 42 2.0
32dbj|AP005633.3| Oryza sativa (japonica cultivar-group) genomic D... 42 2.0
33dbj|AP003764.3| Oryza sativa (japonica cultivar-group) genomic D... 42 2.0
34dbj|AP003258.3| Oryza sativa (japonica cultivar-group) genomic D... 42 2.0
35dbj|AP005320.3| Oryza sativa (japonica cultivar-group) genomic D... 42 2.0
36dbj|AK104997.2| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.0
37dbj|AK122069.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.0
38dbj|AK109596.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.0
39dbj|AK102963.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.0
40dbj|AK102726.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.0
41dbj|AK069570.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.0
42gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ... 42 2.0
43gb|AY955493.2| Triticum aestivum Dof1 mRNA, complete cds 42 2.0
44ref|XM_476103.1| Oryza sativa (japonica cultivar-group), predic... 40 7.9
45gb|AC136520.3| Oryza sativa (japonica cultivar-group) chromosome... 40 7.9
46gb|AC136519.3| Oryza sativa (japonica cultivar-group) chromosome... 40 7.9
47gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete ... 40 7.9
48ref|XM_742269.1| Aspergillus fumigatus Af293 cell wall glucanase... 40 7.9
49emb|CR376790.8| Zebrafish DNA sequence from clone DKEY-148F2 in ... 40 7.9
50gb|AC010060.10| Drosophila melanogaster 3L BAC RP98-22J22 (Roswe... 40 7.9
51gb|AC093497.2| Drosophila melanogaster 3L BAC RP98-1H12 (Roswell... 40 7.9
52gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome 40 7.9
53gb|AE005710.1| Caulobacter crescentus CB15 section 36 of 359 of ... 40 7.9
54gb|AE012313.1| Xanthomonas campestris pv. campestris str. ATCC 3... 40 7.9
55ref|NM_140471.1| Drosophila melanogaster CG13467-RA (CG13467), mRNA 40 7.9
56gb|AC087599.14| Oryza sativa chromosome 10 BAC OSJNBa0057L21 gen... 40 7.9
57gb|CP000249.1| Frankia sp. CcI3, complete genome 40 7.9
58gb|AC109243.10| Mus musculus chromosome 18, clone RP23-139O19, c... 40 7.9
59gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, ... 40 7.9
60dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.9
61dbj|AP003215.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.9
62dbj|AP005298.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.9
63dbj|AK107675.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.9
64gb|AE003533.4| Drosophila melanogaster chromosome 3L, section 52... 40 7.9
65gb|U10884.1|BPU10884 Bacteriophage phi-Lf adsorption protein (II... 40 7.9
66emb|AL929258.15| Mouse DNA sequence from clone RP23-351N6 on chr... 40 7.9

>gb|BT009573.1| Triticum aestivum clone wre1n.pk0027.d4:fis, full insert mRNA
           sequence
          Length = 1042

 Score =  363 bits (183), Expect = 4e-97
 Identities = 198/203 (97%)
 Strand = Plus / Plus

                                                                       
Query: 382 cagggattgaagagggaggccgtgctgcgtgctggccgcgtgttgtcgcgggcgatgctc 441
           ||||| |||| |||||||||||||||||||||||||||||||||||||||||| ||||| 
Sbjct: 8   caggggttgaggagggaggccgtgctgcgtgctggccgcgtgttgtcgcgggcaatgctg 67

                                                                       
Query: 442 ttcgtgttcgggttctactggatccccgtgtccgatcgaagcttccccaatgccgaggat 501
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  ttcgtgttcgggttctactggatccccgtgtccgatcgaagcttccccaatgccgaggat 127

                                                                       
Query: 502 gtacctaaagatcactctgaagaactggaaagaccaggggcgattgtatctaatcatgtg 561
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 gtacctaaagatcactatgaagaactggaaagaccaggggcgattgtatctaatcatgtg 187

                                  
Query: 562 tcatatgtggacattctttatca 584
           |||||||||||||||||||||||
Sbjct: 188 tcatatgtggacattctttatca 210



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>dbj|AK102755.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033107A02, full
           insert sequence
          Length = 2522

 Score =  105 bits (53), Expect = 2e-19
 Identities = 74/81 (91%)
 Strand = Plus / Plus

                                                                       
Query: 269 tcctcctcccgctccgtctcatcgcagggatgctcctggtcgtcgcctactacctcgtgt 328
           ||||| ||||||||||  || |||| |||||||||||| |||||||||||||||||||||
Sbjct: 351 tcctcgtcccgctccggttcgtcgccgggatgctcctgctcgtcgcctactacctcgtgt 410

                                
Query: 329 gccgtgtgtgcacgctgttcg 349
           |||| ||||||||||||||||
Sbjct: 411 gccgcgtgtgcacgctgttcg 431



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 75/88 (85%)
 Strand = Plus / Plus

                                                                        
Query: 497  aggatgtacctaaagatcactctgaagaactggaaagaccaggggcgattgtatctaatc 556
            ||||||||| | ||| ||| ||||||||| |||||  ||||||||| ||||| |||||||
Sbjct: 1655 aggatgtacatcaaggtcaatctgaagaattggaattaccaggggcaattgtgtctaatc 1714

                                        
Query: 557  atgtgtcatatgtggacattctttatca 584
            | ||||| ||||| || |||||||||||
Sbjct: 1715 acgtgtcttatgtagatattctttatca 1742



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 63/73 (86%)
 Strand = Plus / Plus

                                                                       
Query: 427 tcgcgggcgatgctcttcgtgttcgggttctactggatccccgtgtccgatcgaagcttc 486
           |||||||| ||||||||||| ||||||||||||||||||| || | || | || |||| |
Sbjct: 512 tcgcgggcaatgctcttcgtcttcgggttctactggatccgcgagacccaccggagctac 571

                        
Query: 487 cccaatgccgagg 499
           |||||||| ||||
Sbjct: 572 cccaatgctgagg 584



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 48/54 (88%)
 Strand = Plus / Plus

                                                                 
Query: 174 gtacgcgccctatgcgcgccgggatgcgtacgggccgatgggccgtgggccgct 227
           |||||||||||| ||||| ||||| ||||||||| ||||||| || ||||||||
Sbjct: 256 gtacgcgccctacgcgcggcgggacgcgtacgggacgatgggacgcgggccgct 309



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>gb|AC104272.5| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1045_C06,
             complete sequence
          Length = 143130

 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 44/47 (93%)
 Strand = Plus / Minus

                                                            
Query: 299   tgctcctggtcgtcgcctactacctcgtgtgccgtgtgtgcacgctg 345
             ||||| || ||||||||||||||||||||||||| ||||||||||||
Sbjct: 58866 tgctcgtgctcgtcgcctactacctcgtgtgccgcgtgtgcacgctg 58820



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 53/61 (86%)
 Strand = Plus / Minus

                                                                         
Query: 521   aagaactggaaagaccaggggcgattgtatctaatcatgtgtcatatgtggacattcttt 580
             ||||| ||| ||||||||||||  | |||||||||||||| || |||||||| |||||||
Sbjct: 57622 aagaattgggaagaccaggggcagtagtatctaatcatgtatcttatgtggatattcttt 57563

              
Query: 581   a 581
             |
Sbjct: 57562 a 57562



 Score = 46.1 bits (23), Expect = 0.13
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                            
Query: 172   aggtacgcgccctatgcgcgccgggatgcgtacgggccgatgggccg 218
             ||||||||||| || ||| | ||||| ||||||||| ||||||||||
Sbjct: 58993 aggtacgcgccgtacgcgaggcgggacgcgtacggggcgatgggccg 58947



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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 44/47 (93%)
 Strand = Plus / Minus

                                                               
Query: 299      tgctcctggtcgtcgcctactacctcgtgtgccgtgtgtgcacgctg 345
                ||||| || ||||||||||||||||||||||||| ||||||||||||
Sbjct: 16846370 tgctcgtgctcgtcgcctactacctcgtgtgccgcgtgtgcacgctg 16846324



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 53/61 (86%)
 Strand = Plus / Minus

                                                                            
Query: 521      aagaactggaaagaccaggggcgattgtatctaatcatgtgtcatatgtggacattcttt 580
                ||||| ||| ||||||||||||  | |||||||||||||| || |||||||| |||||||
Sbjct: 16845126 aagaattgggaagaccaggggcagtagtatctaatcatgtatcttatgtggatattcttt 16845067

                 
Query: 581      a 581
                |
Sbjct: 16845066 a 16845066



 Score = 46.1 bits (23), Expect = 0.13
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                               
Query: 172      aggtacgcgccctatgcgcgccgggatgcgtacgggccgatgggccg 218
                ||||||||||| || ||| | ||||| ||||||||| ||||||||||
Sbjct: 16846497 aggtacgcgccgtacgcgaggcgggacgcgtacggggcgatgggccg 16846451



 Score = 40.1 bits (20), Expect = 7.9
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                               
Query: 257     tcgccggcgtcgtcctcctcccgctccgtctc 288
               |||||| |||||||||||| ||||||| ||||
Sbjct: 6125381 tcgccgtcgtcgtcctccttccgctccttctc 6125412



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>gb|AY111650.1| Zea mays CL15598_1 mRNA sequence
          Length = 920

 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 50/55 (90%)
 Strand = Plus / Minus

                                                                  
Query: 530 aaagaccaggggcgattgtatctaatcatgtgtcatatgtggacattctttatca 584
           |||| |||||||| ||||||||||||||||| || |||||||| |||||||||||
Sbjct: 825 aaaggccaggggcaattgtatctaatcatgtctcttatgtggatattctttatca 771



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 31/32 (96%)
 Strand = Plus / Minus

                                           
Query: 435 gatgctcttcgtgttcgggttctactggatcc 466
           |||||||||||| |||||||||||||||||||
Sbjct: 920 gatgctcttcgtcttcgggttctactggatcc 889



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>dbj|AK060514.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-019-F05, full
           insert sequence
          Length = 1500

 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 44/47 (93%)
 Strand = Plus / Plus

                                                          
Query: 299 tgctcctggtcgtcgcctactacctcgtgtgccgtgtgtgcacgctg 345
           ||||| || ||||||||||||||||||||||||| ||||||||||||
Sbjct: 349 tgctcgtgctcgtcgcctactacctcgtgtgccgcgtgtgcacgctg 395



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 53/61 (86%)
 Strand = Plus / Plus

                                                                       
Query: 521 aagaactggaaagaccaggggcgattgtatctaatcatgtgtcatatgtggacattcttt 580
           ||||| ||| ||||||||||||  | |||||||||||||| || |||||||| |||||||
Sbjct: 613 aagaattgggaagaccaggggcagtagtatctaatcatgtatcttatgtggatattcttt 672

            
Query: 581 a 581
           |
Sbjct: 673 a 673



 Score = 46.1 bits (23), Expect = 0.13
 Identities = 41/47 (87%)
 Strand = Plus / Plus

                                                          
Query: 172 aggtacgcgccctatgcgcgccgggatgcgtacgggccgatgggccg 218
           ||||||||||| || ||| | ||||| ||||||||| ||||||||||
Sbjct: 222 aggtacgcgccgtacgcgaggcgggacgcgtacggggcgatgggccg 268



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>gb|AY105792.1| Zea mays PCO111792 mRNA sequence
          Length = 1502

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 49/56 (87%)
 Strand = Plus / Plus

                                                                   
Query: 529 gaaagaccaggggcgattgtatctaatcatgtgtcatatgtggacattctttatca 584
           ||||| || ||||| ||||| ||||||||||| || |||||||| |||||||||||
Sbjct: 620 gaaaggcctggggcaattgtgtctaatcatgtatcttatgtggatattctttatca 675



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                          
Query: 315 ctactacctcgtgtgccgtgtgtgcacgctg 345
           |||||||||||||||||| ||||||||||||
Sbjct: 391 ctactacctcgtgtgccgcgtgtgcacgctg 421



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>ref|NM_197341.1| Oryza sativa (japonica cultivar-group) putative cytochrome P450
           (OSJNBa0026L12.6), mRNA
          Length = 1539

 Score = 48.1 bits (24), Expect = 0.033
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 256 ctcgccggcgtcgtcctcctcccgctcc 283
           |||||||||||| |||||||||||||||
Sbjct: 19  ctcgccggcgtcctcctcctcccgctcc 46



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>gb|AC068924.11| Oryza sativa chromosome 10 BAC OSJNBa0026L12 genomic sequence, complete
             sequence
          Length = 152172

 Score = 48.1 bits (24), Expect = 0.033
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                         
Query: 256   ctcgccggcgtcgtcctcctcccgctcc 283
             |||||||||||| |||||||||||||||
Sbjct: 37391 ctcgccggcgtcctcctcctcccgctcc 37418



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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 48.1 bits (24), Expect = 0.033
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                            
Query: 256      ctcgccggcgtcgtcctcctcccgctcc 283
                |||||||||||| |||||||||||||||
Sbjct: 19338990 ctcgccggcgtcctcctcctcccgctcc 19338963



 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                      
Query: 256      ctcgccggcgtcgtcctcctcc 277
                ||||||||||||||||||||||
Sbjct: 14047208 ctcgccggcgtcgtcctcctcc 14047229



 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 91       ggcggcgatggcggtggaga 110
                ||||||||||||||||||||
Sbjct: 21853943 ggcggcgatggcggtggaga 21853962



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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 48.1 bits (24), Expect = 0.033
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                            
Query: 256      ctcgccggcgtcgtcctcctcccgctcc 283
                |||||||||||| |||||||||||||||
Sbjct: 19350266 ctcgccggcgtcctcctcctcccgctcc 19350239



 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                      
Query: 256      ctcgccggcgtcgtcctcctcc 277
                ||||||||||||||||||||||
Sbjct: 14055450 ctcgccggcgtcgtcctcctcc 14055471



 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 91       ggcggcgatggcggtggaga 110
                ||||||||||||||||||||
Sbjct: 21865606 ggcggcgatggcggtggaga 21865625



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                              
Query: 253     gtgctcgccggcgtcgtcctcctcccgctcc 283
               ||||||| |||||||||||| ||||||||||
Sbjct: 4020502 gtgctcgacggcgtcgtcctactcccgctcc 4020472



 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 301     ctcctggtcgtcgcctactacctcg 325
               ||||||||||||||| |||||||||
Sbjct: 1833464 ctcctggtcgtcgccgactacctcg 1833440



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>gb|AC090484.4| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBa0061L19, from chromosome 3, complete sequence
          Length = 153322

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                            
Query: 253   gtgctcgccggcgtcgtcctcctcccgctcc 283
             ||||||| |||||||||||| ||||||||||
Sbjct: 78866 gtgctcgacggcgtcgtcctactcccgctcc 78896



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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                       
Query: 255      gctcgccggcgtcgtcctcctcc 277
                |||||||||||||||||||||||
Sbjct: 18194337 gctcgccggcgtcgtcctcctcc 18194359



 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 264      cgtcgtcctcctcccgctccg 284
                |||||||||||||||||||||
Sbjct: 18333464 cgtcgtcctcctcccgctccg 18333444



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                              
Query: 253     gtgctcgccggcgtcgtcctcctcccgctcc 283
               ||||||| |||||||||||| ||||||||||
Sbjct: 4020613 gtgctcgacggcgtcgtcctactcccgctcc 4020583



 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 301     ctcctggtcgtcgcctactacctcg 325
               ||||||||||||||| |||||||||
Sbjct: 1833462 ctcctggtcgtcgccgactacctcg 1833438



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>dbj|AP005759.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0556A05
          Length = 158189

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 255   gctcgccggcgtcgtcctcctcc 277
             |||||||||||||||||||||||
Sbjct: 43061 gctcgccggcgtcgtcctcctcc 43083



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>dbj|AK109502.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-208-A02, full
           insert sequence
          Length = 1169

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                          
Query: 253 gtgctcgccggcgtcgtcctcctcccgctcc 283
           ||||||| |||||||||||| ||||||||||
Sbjct: 684 gtgctcgacggcgtcgtcctactcccgctcc 714



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>ref|NM_196495.1| Oryza sativa (japonica cultivar-group) putative beta-ketoacyl-CoA
            synthase (OSJNBa0032I20.8), mRNA
          Length = 1572

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 256  ctcgccggcgtcgtcctcctcc 277
            ||||||||||||||||||||||
Sbjct: 1011 ctcgccggcgtcgtcctcctcc 990



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>gb|AF229187.1|AF229187 Oryza sativa subsp. japonica BAC clone nbxb0032I20, complete sequence
          Length = 144651

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 256   ctcgccggcgtcgtcctcctcc 277
             ||||||||||||||||||||||
Sbjct: 63337 ctcgccggcgtcgtcctcctcc 63358



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>dbj|AK073016.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023149L14, full
           insert sequence
          Length = 1040

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 256 ctcgccggcgtcgtcctcctcc 277
           ||||||||||||||||||||||
Sbjct: 282 ctcgccggcgtcgtcctcctcc 261



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>gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome
          Length = 7215267

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 59      acaccaccaccgccgcgccttc 80
               ||||||||||||||||||||||
Sbjct: 3625282 acaccaccaccgccgcgccttc 3625303



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>gb|AC140005.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJA1004C08,
             complete sequence
          Length = 138054

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 301   ctcctggtcgtcgcctactacctcg 325
             ||||||||||||||| |||||||||
Sbjct: 58326 ctcctggtcgtcgccgactacctcg 58302



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>ref|NM_184033.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2403

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 91  ggcggcgatggcggtggagag 111
           |||||||||||||||||||||
Sbjct: 87  ggcggcgatggcggtggagag 67



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>ref|XM_478415.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 888

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 257 tcgccggcgtcgtcctcctcc 277
           |||||||||||||||||||||
Sbjct: 583 tcgccggcgtcgtcctcctcc 563



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>gb|AE009373.1| Agrobacterium tumefaciens str. C58 linear chromosome, section 143 of
            187 of the complete sequence
          Length = 13358

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 91   ggcggcgatggcggtggagag 111
            |||||||||||||||||||||
Sbjct: 1317 ggcggcgatggcggtggagag 1297



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>gb|AE008241.1| Agrobacterium tumefaciens str. C58 linear chromosome, section 45 of
            187 of the complete sequence
          Length = 10465

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 91   ggcggcgatggcggtggagag 111
            |||||||||||||||||||||
Sbjct: 9149 ggcggcgatggcggtggagag 9169



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>ref|XM_970460.1| PREDICTED: Tribolium castaneum similar to CG5977-PA, isoform A
           (LOC664454), mRNA
          Length = 2237

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 60  caccaccaccgccgcgccttc 80
           |||||||||||||||||||||
Sbjct: 391 caccaccaccgccgcgccttc 411



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>gb|AC098693.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
           OJ1004C08, complete sequence
          Length = 133090

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 301 ctcctggtcgtcgcctactacctcg 325
           ||||||||||||||| |||||||||
Sbjct: 898 ctcctggtcgtcgccgactacctcg 922



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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 257      tcgccggcgtcgtcctcctcc 277
                |||||||||||||||||||||
Sbjct: 19834121 tcgccggcgtcgtcctcctcc 19834141



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 91       ggcggcgatggcggtggagag 111
                |||||||||||||||||||||
Sbjct: 14042634 ggcggcgatggcggtggagag 14042614



 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 90      aggcggcgatggcggtggagaggc 113
               |||||||| |||||||||||||||
Sbjct: 3786370 aggcggcggtggcggtggagaggc 3786393



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>gb|AC103777.14| Homo sapiens chromosome 8, clone RP11-460G23, complete sequence
          Length = 164588

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 11     tctcggcttcccgtctctctc 31
              |||||||||||||||||||||
Sbjct: 130940 tctcggcttcccgtctctctc 130920



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>dbj|AP005633.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0463G11
          Length = 154188

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 264   cgtcgtcctcctcccgctccg 284
             |||||||||||||||||||||
Sbjct: 48200 cgtcgtcctcctcccgctccg 48180



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>dbj|AP003764.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:B1051E10
          Length = 207782

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 91     ggcggcgatggcggtggagag 111
              |||||||||||||||||||||
Sbjct: 202936 ggcggcgatggcggtggagag 202916



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>dbj|AP003258.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0463A02
          Length = 151041

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 91     ggcggcgatggcggtggagag 111
              |||||||||||||||||||||
Sbjct: 118379 ggcggcgatggcggtggagag 118359



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>dbj|AP005320.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0650C03
          Length = 144337

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 257   tcgccggcgtcgtcctcctcc 277
             |||||||||||||||||||||
Sbjct: 74280 tcgccggcgtcgtcctcctcc 74300



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>dbj|AK104997.2| Oryza sativa (japonica cultivar-group) cDNA clone:001-003-D10, full
           insert sequence
          Length = 1879

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 301 ctcctggtcgtcgcctactacctcg 325
           ||||||||||||||| |||||||||
Sbjct: 100 ctcctggtcgtcgccgactacctcg 76



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>dbj|AK122069.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033117I10, full
           insert sequence
          Length = 1944

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 301 ctcctggtcgtcgcctactacctcg 325
           ||||||||||||||| |||||||||
Sbjct: 105 ctcctggtcgtcgccgactacctcg 81



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>dbj|AK109596.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-137-D05, full
           insert sequence
          Length = 2103

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 264 cgtcgtcctcctcccgctccg 284
           |||||||||||||||||||||
Sbjct: 643 cgtcgtcctcctcccgctccg 623



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>dbj|AK102963.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033115I11, full
           insert sequence
          Length = 3046

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 91  ggcggcgatggcggtggagag 111
           |||||||||||||||||||||
Sbjct: 158 ggcggcgatggcggtggagag 138



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>dbj|AK102726.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033105M03, full
           insert sequence
          Length = 938

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 257 tcgccggcgtcgtcctcctcc 277
           |||||||||||||||||||||
Sbjct: 587 tcgccggcgtcgtcctcctcc 567



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>dbj|AK069570.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023025A03, full
           insert sequence
          Length = 889

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 257 tcgccggcgtcgtcctcctcc 277
           |||||||||||||||||||||
Sbjct: 584 tcgccggcgtcgtcctcctcc 564



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>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 50      tggccgtcgacaccaccaccg 70
               |||||||||||||||||||||
Sbjct: 2726203 tggccgtcgacaccaccaccg 2726183



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>gb|AY955493.2| Triticum aestivum Dof1 mRNA, complete cds
          Length = 1000

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 263 gcgtcgtcctcctcccgctcc 283
           |||||||||||||||||||||
Sbjct: 477 gcgtcgtcctcctcccgctcc 497



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>ref|XM_476103.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 840

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 257 tcgccggcgtcgtcctcctcccgctccgtctc 288
           |||||| |||||||||||| ||||||| ||||
Sbjct: 286 tcgccgtcgtcgtcctccttccgctccttctc 317



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>gb|AC136520.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBa0017O06, complete sequence
          Length = 151656

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 257   tcgccggcgtcgtcctcctcccgctccgtctc 288
             |||||| |||||||||||| ||||||| ||||
Sbjct: 72950 tcgccgtcgtcgtcctccttccgctccttctc 72981



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>gb|AC136519.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0007C23,
              complete sequence
          Length = 173764

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                              
Query: 257    tcgccggcgtcgtcctcctcccgctccgtctc 288
              |||||| |||||||||||| ||||||| ||||
Sbjct: 172934 tcgccgtcgtcgtcctccttccgctccttctc 172965



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>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome
          Length = 2584158

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 253     gtgctcgccggcgtcgtcctcctc 276
               ||||||||||||||||||| ||||
Sbjct: 2424308 gtgctcgccggcgtcgtccgcctc 2424285



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>ref|XM_742269.1| Aspergillus fumigatus Af293 cell wall glucanase (Afu8g05610) partial
            mRNA
          Length = 1851

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 58   gacaccaccaccgccgcgccttcc 81
            |||||||||||||||| |||||||
Sbjct: 988  gacaccaccaccgccgtgccttcc 1011



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>emb|CR376790.8| Zebrafish DNA sequence from clone DKEY-148F2 in linkage group 1,
             complete sequence
          Length = 129495

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 16    gcttcccgtctctctcactc 35
             ||||||||||||||||||||
Sbjct: 74832 gcttcccgtctctctcactc 74851



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>gb|AC010060.10| Drosophila melanogaster 3L BAC RP98-22J22 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 200985

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 96     cgatggcggtggagaggcag 115
              ||||||||||||||||||||
Sbjct: 147107 cgatggcggtggagaggcag 147126



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>gb|AC093497.2| Drosophila melanogaster 3L BAC RP98-1H12 (Roswell Park Cancer
            Institute Drosophila BAC Library) complete sequence
          Length = 170071

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 96   cgatggcggtggagaggcag 115
            ||||||||||||||||||||
Sbjct: 9496 cgatggcggtggagaggcag 9515



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>gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome
          Length = 2932766

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 260     ccggcgtcgtcctcctcccgctcc 283
               ||||||||| ||||||||||||||
Sbjct: 1708963 ccggcgtcggcctcctcccgctcc 1708940



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>gb|AE005710.1| Caulobacter crescentus CB15 section 36 of 359 of the complete genome
          Length = 11283

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 85    cctgaaggcggcgatggcgg 104
             ||||||||||||||||||||
Sbjct: 11157 cctgaaggcggcgatggcgg 11176



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>gb|AE012313.1| Xanthomonas campestris pv. campestris str. ATCC 33913,  section 221
            of 460 of the complete genome
          Length = 12227

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 91   ggcggcgatggcggtggaga 110
            ||||||||||||||||||||
Sbjct: 9617 ggcggcgatggcggtggaga 9598



 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 91   ggcggcgatggcggtggaga 110
            ||||||||||||||||||||
Sbjct: 3691 ggcggcgatggcggtggaga 3710



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>ref|NM_140471.1| Drosophila melanogaster CG13467-RA (CG13467), mRNA
          Length = 891

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 96  cgatggcggtggagaggcag 115
           ||||||||||||||||||||
Sbjct: 69  cgatggcggtggagaggcag 88



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>gb|AC087599.14| Oryza sativa chromosome 10 BAC OSJNBa0057L21 genomic sequence, complete
              sequence
          Length = 183046

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 91     ggcggcgatggcggtggaga 110
              ||||||||||||||||||||
Sbjct: 154378 ggcggcgatggcggtggaga 154359



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>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 206     ggccgatgggccgtgggccg 225
               ||||||||||||||||||||
Sbjct: 1062256 ggccgatgggccgtgggccg 1062275



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>gb|AC109243.10| Mus musculus chromosome 18, clone RP23-139O19, complete sequence
          Length = 186687

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 61    accaccaccgccgcgccttc 80
             ||||||||||||||||||||
Sbjct: 56012 accaccaccgccgcgccttc 56031



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>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome
          Length = 5148708

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 91      ggcggcgatggcggtggaga 110
               ||||||||||||||||||||
Sbjct: 2534513 ggcggcgatggcggtggaga 2534532



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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 51       ggccgtcgacaccaccaccgccgc 74
                ||||| ||||||||||||||||||
Sbjct: 17264608 ggccgccgacaccaccaccgccgc 17264631



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>dbj|AP003215.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OSJNBa0089K24
          Length = 154137

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 90    aggcggcgatggcggtggagaggc 113
             |||||||| |||||||||||||||
Sbjct: 59912 aggcggcggtggcggtggagaggc 59935



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>dbj|AP005298.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:OJ1770_H03
          Length = 189893

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 51     ggccgtcgacaccaccaccgccgc 74
              ||||| ||||||||||||||||||
Sbjct: 125233 ggccgccgacaccaccaccgccgc 125256



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>dbj|AK107675.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-132-A01, full
           insert sequence
          Length = 1540

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 257 tcgccggcgtcgtcctcctcccgctccgtctc 288
           |||||| |||||||||||| ||||||| ||||
Sbjct: 430 tcgccgtcgtcgtcctccttccgctccttctc 461



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>gb|AE003533.4| Drosophila melanogaster chromosome 3L, section 52 of 83 of the complete
              sequence
          Length = 289141

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 96     cgatggcggtggagaggcag 115
              ||||||||||||||||||||
Sbjct: 271663 cgatggcggtggagaggcag 271682



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>gb|U10884.1|BPU10884 Bacteriophage phi-Lf adsorption protein (III) gene, complete cds
          Length = 1171

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 91  ggcggcgatggcggtggaga 110
           ||||||||||||||||||||
Sbjct: 710 ggcggcgatggcggtggaga 729



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>emb|AL929258.15| Mouse DNA sequence from clone RP23-351N6 on chromosome 4, complete
             sequence
          Length = 68850

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 376   cgcctacagggattgaagag 395
             ||||||||||||||||||||
Sbjct: 41606 cgcctacagggattgaagag 41587


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,418,910
Number of Sequences: 3902068
Number of extensions: 3418910
Number of successful extensions: 77689
Number of sequences better than 10.0: 66
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 76060
Number of HSP's gapped (non-prelim): 1629
length of query: 584
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 561
effective length of database: 17,143,297,704
effective search space: 9617390011944
effective search space used: 9617390011944
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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