ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd2j15
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PPSA_AERPE (Q9YEC5) Phosphoenolpyruvate synthase (EC 2.7.9.2) (P... 30 1.1
2MUC1_MOUSE (Q02496) Mucin-1 precursor (Polymorphic epithelial mu... 27 9.1
3TRPE_AZOBR (P50872) Anthranilate synthase (EC 4.1.3.27) [Include... 27 9.1

>PPSA_AERPE (Q9YEC5) Phosphoenolpyruvate synthase (EC 2.7.9.2) (Pyruvate, water|
           dikinase) (PEP synthase)
          Length = 845

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
 Frame = +3

Query: 234 DPDYEQGETLLWEASGSPLIPLSEFSHPSVAK---KYGVKPDAETL 362
           DPD  +   +    SG  L  L    HP+VA+   KYG++PDA +L
Sbjct: 283 DPDLNENVEIKIPESGEELEDLRR-KHPAVAEVVEKYGIRPDAPSL 327



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>MUC1_MOUSE (Q02496) Mucin-1 precursor (Polymorphic epithelial mucin) (PEMT)|
           (Episialin)
          Length = 630

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +3

Query: 258 TLLWEASGSPLIPLSEFSHPSVAKKYGVKPDAETLDMLNTIA 383
           +L++  S     P+S  + PSV  +Y V P   T    +TIA
Sbjct: 351 SLVYNTSAIATTPVSNGTQPSVPSQYPVSPTMATTSSHSTIA 392



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>TRPE_AZOBR (P50872) Anthranilate synthase (EC 4.1.3.27) [Includes: Glutamine|
           amidotransferase]
          Length = 732

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -3

Query: 181 AAHCSAARLPSEKSTARPTHLSPSAAMVDLFSLP 80
           A+  S A LP E+ + +P+  S   A++DLF+ P
Sbjct: 123 ASSASPAPLPGEERSRQPSVFSVLRAVLDLFAAP 156


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,545,752
Number of Sequences: 219361
Number of extensions: 393042
Number of successful extensions: 1207
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1207
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 1391514312
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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