ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd2j15
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AY781348.1| Triticum aestivum USP family protein mRNA, comple... 486 e-134
2ref|XM_475607.1| Oryza sativa (japonica cultivar-group), predic... 305 6e-80
3dbj|AK065771.1| Oryza sativa (japonica cultivar-group) cDNA clon... 305 6e-80
4dbj|AK103075.1| Oryza sativa (japonica cultivar-group) cDNA clon... 297 1e-77
5dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 252 7e-64
6gb|AC087425.2| Oryza sativa (japonica cultivar-group) chromosome... 252 7e-64
7gb|AY596596.1| Saccharum officinarum clone SCCCLR1072E04, comple... 214 2e-52
8gb|AY107821.1| Zea mays PCO148543 mRNA sequence 190 2e-45
9ref|XM_463477.1| Oryza sativa (japonica cultivar-group), predic... 58 2e-05
10dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 58 2e-05
11dbj|AP003242.3| Oryza sativa (japonica cultivar-group) genomic D... 58 2e-05
12dbj|AK108159.1| Oryza sativa (japonica cultivar-group) cDNA clon... 58 2e-05
13ref|NM_183532.1| Oryza sativa (japonica cultivar-group), mRNA 42 1.3
14gb|BT017342.1| Zea mays clone EL01N0323A01.c mRNA sequence 42 1.3
15dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.3
16dbj|AP003371.5| Oryza sativa (japonica cultivar-group) genomic D... 42 1.3
17dbj|AP002882.2| Oryza sativa (japonica cultivar-group) genomic D... 42 1.3
18dbj|AK120590.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.3
19gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome 42 1.3
20gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 42 1.3
21emb|AL731787.3|CNS08C8B Oryza sativa chromosome 12, . BAC OSJNBb... 42 1.3
22gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete ... 40 5.1
23gb|AC149542.1| Populus trichocarpa clone Pop1-2C5, complete sequ... 40 5.1
24emb|AL953897.6| Human DNA sequence from clone RP11-56N19 on chro... 40 5.1
25gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 5.1

>gb|AY781348.1| Triticum aestivum USP family protein mRNA, complete cds
          Length = 902

 Score =  486 bits (245), Expect = e-134
 Identities = 275/285 (96%)
 Strand = Plus / Plus

                                                                       
Query: 100 ccatggccgcggaaggcgagaggtgggtgggcctggcggtggacttctcggaggggagcc 159
           ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 93  ccatggctgcggacggcgagaggtgggtgggcctggcggtggacttctcggaggggagcc 152

                                                                       
Query: 160 gcgcggcgctgcagtgggcggcggacaacctgctccgctccggcgacaacctgctcctcc 219
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153 gcgcggcgctgcagtgggcggcggacaacctgctccgctccggcgacaacctgctcctcc 212

                                                                       
Query: 220 tccacgtcctcaaggaccccgactacgagcagggcgagaccctcctctgggaggcctccg 279
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 tgcacgtcctcaaggaccccgactacgagcagggcgagaccctcctctgggaggcctccg 272

                                                                       
Query: 280 gctcgcctttgatccccctctcggaattctctcacccttcggtcgcaaagaaatatgggg 339
           ||||||||||||||||||||||||| ||||||||||||||    ||||||||||||||||
Sbjct: 273 gctcgcctttgatccccctctcggagttctctcacccttcaactgcaaagaaatatgggg 332

                                                        
Query: 340 tgaagcctgatgctgaaacactggacatgctcaacaccatagcta 384
           ||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct: 333 tgaagcctgatgctgaaacgctggacatgctcaacactatagcta 377



to top

>ref|XM_475607.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 504

 Score =  305 bits (154), Expect = 6e-80
 Identities = 226/250 (90%)
 Strand = Plus / Plus

                                                                       
Query: 121 ggtgggtgggcctggcggtggacttctcggaggggagccgcgcggcgctgcagtgggcgg 180
           ||||||||||   |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 29  ggtgggtgggggcggcggtggacttctcggaggggagccgcgcggcgctgcggtgggcgg 88

                                                                       
Query: 181 cggacaacctgctccgctccggcgacaacctgctcctcctccacgtcctcaaggaccccg 240
           ||||||||||||||||| |||||||| ||||  |||||||||||||||||||||||||||
Sbjct: 89  cggacaacctgctccgcgccggcgaccacctcatcctcctccacgtcctcaaggaccccg 148

                                                                       
Query: 241 actacgagcagggcgagaccctcctctgggaggcctccggctcgcctttgatccccctct 300
           ||||||||||||||||||||||||||||||||||| ||||||| || ||||| |||||||
Sbjct: 149 actacgagcagggcgagaccctcctctgggaggccaccggctccccattgattcccctct 208

                                                                       
Query: 301 cggaattctctcacccttcggtcgcaaagaaatatggggtgaagcctgatgctgaaacac 360
           |||| |||||| | ||| |  | |||||||||||||| |  ||||||||||| |||||| 
Sbjct: 209 cggatttctctgaacctacaattgcaaagaaatatggagcaaagcctgatgccgaaacat 268

                     
Query: 361 tggacatgct 370
           ||||||||||
Sbjct: 269 tggacatgct 278



to top

>dbj|AK065771.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013041K03, full
           insert sequence
          Length = 777

 Score =  305 bits (154), Expect = 6e-80
 Identities = 226/250 (90%)
 Strand = Plus / Plus

                                                                       
Query: 121 ggtgggtgggcctggcggtggacttctcggaggggagccgcgcggcgctgcagtgggcgg 180
           ||||||||||   |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 117 ggtgggtgggggcggcggtggacttctcggaggggagccgcgcggcgctgcggtgggcgg 176

                                                                       
Query: 181 cggacaacctgctccgctccggcgacaacctgctcctcctccacgtcctcaaggaccccg 240
           ||||||||||||||||| |||||||| ||||  |||||||||||||||||||||||||||
Sbjct: 177 cggacaacctgctccgcgccggcgaccacctcatcctcctccacgtcctcaaggaccccg 236

                                                                       
Query: 241 actacgagcagggcgagaccctcctctgggaggcctccggctcgcctttgatccccctct 300
           ||||||||||||||||||||||||||||||||||| ||||||| || ||||| |||||||
Sbjct: 237 actacgagcagggcgagaccctcctctgggaggccaccggctccccattgattcccctct 296

                                                                       
Query: 301 cggaattctctcacccttcggtcgcaaagaaatatggggtgaagcctgatgctgaaacac 360
           |||| |||||| | ||| |  | |||||||||||||| |  ||||||||||| |||||| 
Sbjct: 297 cggatttctctgaacctacaattgcaaagaaatatggagcaaagcctgatgccgaaacat 356

                     
Query: 361 tggacatgct 370
           ||||||||||
Sbjct: 357 tggacatgct 366



to top

>dbj|AK103075.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033118C16, full
           insert sequence
          Length = 780

 Score =  297 bits (150), Expect = 1e-77
 Identities = 225/250 (90%)
 Strand = Plus / Plus

                                                                       
Query: 121 ggtgggtgggcctggcggtggacttctcggaggggagccgcgcggcgctgcagtgggcgg 180
           ||||||||||   |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 117 ggtgggtgggggcggcggtggacttctcggaggggagccgcgcggcgctgcggtgggcgg 176

                                                                       
Query: 181 cggacaacctgctccgctccggcgacaacctgctcctcctccacgtcctcaaggaccccg 240
           ||||||||||||||||| |||||||| ||||  ||||||||||||||| |||||||||||
Sbjct: 177 cggacaacctgctccgcgccggcgaccacctcatcctcctccacgtccccaaggaccccg 236

                                                                       
Query: 241 actacgagcagggcgagaccctcctctgggaggcctccggctcgcctttgatccccctct 300
           ||||||||||||||||||||||||||||||||||| ||||||| || ||||| |||||||
Sbjct: 237 actacgagcagggcgagaccctcctctgggaggccaccggctccccattgattcccctct 296

                                                                       
Query: 301 cggaattctctcacccttcggtcgcaaagaaatatggggtgaagcctgatgctgaaacac 360
           |||| |||||| | ||| |  | |||||||||||||| |  ||||||||||| |||||| 
Sbjct: 297 cggatttctctgaacctacaattgcaaagaaatatggagcaaagcctgatgccgaaacat 356

                     
Query: 361 tggacatgct 370
           ||||||||||
Sbjct: 357 tggacatgct 366



to top

>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score =  252 bits (127), Expect = 7e-64
 Identities = 154/163 (94%)
 Strand = Plus / Minus

                                                                           
Query: 121     ggtgggtgggcctggcggtggacttctcggaggggagccgcgcggcgctgcagtgggcgg 180
               ||||||||||   |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 3286734 ggtgggtgggggcggcggtggacttctcggaggggagccgcgcggcgctgcggtgggcgg 3286675

                                                                           
Query: 181     cggacaacctgctccgctccggcgacaacctgctcctcctccacgtcctcaaggaccccg 240
               ||||||||||||||||| |||||||| ||||  |||||||||||||||||||||||||||
Sbjct: 3286674 cggacaacctgctccgcgccggcgaccacctcatcctcctccacgtcctcaaggaccccg 3286615

                                                          
Query: 241     actacgagcagggcgagaccctcctctgggaggcctccggctc 283
               ||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 3286614 actacgagcagggcgagaccctcctctgggaggccaccggctc 3286572



 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 70/83 (84%)
 Strand = Plus / Minus

                                                                           
Query: 288     ttgatccccctctcggaattctctcacccttcggtcgcaaagaaatatggggtgaagcct 347
               ||||| ||||||||||| |||||| | ||| |  | |||||||||||||| |  ||||||
Sbjct: 3285407 ttgattcccctctcggatttctctgaacctacaattgcaaagaaatatggagcaaagcct 3285348

                                      
Query: 348     gatgctgaaacactggacatgct 370
               ||||| |||||| ||||||||||
Sbjct: 3285347 gatgccgaaacattggacatgct 3285325



to top

>gb|AC087425.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0676G05,
             complete sequence
          Length = 167317

 Score =  252 bits (127), Expect = 7e-64
 Identities = 154/163 (94%)
 Strand = Plus / Minus

                                                                         
Query: 121   ggtgggtgggcctggcggtggacttctcggaggggagccgcgcggcgctgcagtgggcgg 180
             ||||||||||   |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 80558 ggtgggtgggggcggcggtggacttctcggaggggagccgcgcggcgctgcggtgggcgg 80499

                                                                         
Query: 181   cggacaacctgctccgctccggcgacaacctgctcctcctccacgtcctcaaggaccccg 240
             ||||||||||||||||| |||||||| ||||  |||||||||||||||||||||||||||
Sbjct: 80498 cggacaacctgctccgcgccggcgaccacctcatcctcctccacgtcctcaaggaccccg 80439

                                                        
Query: 241   actacgagcagggcgagaccctcctctgggaggcctccggctc 283
             ||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 80438 actacgagcagggcgagaccctcctctgggaggccaccggctc 80396



 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 70/83 (84%)
 Strand = Plus / Minus

                                                                         
Query: 288   ttgatccccctctcggaattctctcacccttcggtcgcaaagaaatatggggtgaagcct 347
             ||||| ||||||||||| |||||| | ||| |  | |||||||||||||| |  ||||||
Sbjct: 79231 ttgattcccctctcggatttctctgaacctacaattgcaaagaaatatggagcaaagcct 79172

                                    
Query: 348   gatgctgaaacactggacatgct 370
             ||||| |||||| ||||||||||
Sbjct: 79171 gatgccgaaacattggacatgct 79149



to top

>gb|AY596596.1| Saccharum officinarum clone SCCCLR1072E04, complete sequence
          Length = 821

 Score =  214 bits (108), Expect = 2e-52
 Identities = 180/204 (88%)
 Strand = Plus / Plus

                                                                       
Query: 114 ggcgagaggtgggtgggcctggcggtggacttctcggaggggagccgcgcggcgctgcag 173
           ||||||||||||||||| ||||||  ||||||||||||||||||||| |||||||||| |
Sbjct: 103 ggcgagaggtgggtggggctggcgacggacttctcggaggggagccgggcggcgctgcgg 162

                                                                       
Query: 174 tgggcggcggacaacctgctccgctccggcgacaacctgctcctcctccacgtcctcaag 233
           |||||||||| ||||||||| ||| |||||||| ||||||| || || |||||| |||||
Sbjct: 163 tgggcggcggccaacctgctgcgcgccggcgaccacctgctgctgctgcacgtcatcaag 222

                                                                       
Query: 234 gaccccgactacgagcagggcgagaccctcctctgggaggcctccggctcgcctttgatc 293
           || ||||||||||||||| ||||| || ||||||||||  || ||||||| || ||||| 
Sbjct: 223 gagcccgactacgagcagagcgaggccatcctctgggaatccaccggctccccgttgatt 282

                                   
Query: 294 cccctctcggaattctctcaccct 317
           |||||||||||||||||| |||||
Sbjct: 283 cccctctcggaattctctgaccct 306



to top

>gb|AY107821.1| Zea mays PCO148543 mRNA sequence
          Length = 910

 Score =  190 bits (96), Expect = 2e-45
 Identities = 177/204 (86%)
 Strand = Plus / Plus

                                                                       
Query: 114 ggcgagaggtgggtgggcctggcggtggacttctcggaggggagccgcgcggcgctgcag 173
           ||||||||||||||||| || ||   ||||||||||||||||||||| |||||||||| |
Sbjct: 184 ggcgagaggtgggtggggctagcaacggacttctcggaggggagccgggcggcgctgcgg 243

                                                                       
Query: 174 tgggcggcggacaacctgctccgctccggcgacaacctgctcctcctccacgtcctcaag 233
           |||||||||| ||||||||| ||  |||||||| ||||||| || || |||||| |||||
Sbjct: 244 tgggcggcggccaacctgctgcgagccggcgaccacctgctgctgctgcacgtcatcaag 303

                                                                       
Query: 234 gaccccgactacgagcagggcgagaccctcctctgggaggcctccggctcgcctttgatc 293
           || ||||||||||||||| ||||| || ||||||||||  || ||||||| || ||||| 
Sbjct: 304 gagcccgactacgagcagagcgaggccatcctctgggaatccaccggctccccgttgatt 363

                                   
Query: 294 cccctctcggaattctctcaccct 317
           |||||||||||||||||| |||||
Sbjct: 364 cccctctcggaattctctgaccct 387



to top

>ref|XM_463477.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 489

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 53/61 (86%)
 Strand = Plus / Plus

                                                                       
Query: 164 ggcgctgcagtgggcggcggacaacctgctccgctccggcgacaacctgctcctcctcca 223
           |||||||||||||||||| |||||||| ||||||   ||||||| |||  ||||||||||
Sbjct: 66  ggcgctgcagtgggcggccgacaacctcctccgcaagggcgacaccctcgtcctcctcca 125

            
Query: 224 c 224
           |
Sbjct: 126 c 126



to top

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 53/61 (86%)
 Strand = Plus / Minus

                                                                            
Query: 164      ggcgctgcagtgggcggcggacaacctgctccgctccggcgacaacctgctcctcctcca 223
                |||||||||||||||||| |||||||| ||||||   ||||||| |||  ||||||||||
Sbjct: 36491239 ggcgctgcagtgggcggccgacaacctcctccgcaagggcgacaccctcgtcctcctcca 36491180

                 
Query: 224      c 224
                |
Sbjct: 36491179 c 36491179



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 147      tcggaggggagccgcgcggcgctgc 171
                ||||||| |||||||||||||||||
Sbjct: 32411758 tcggaggcgagccgcgcggcgctgc 32411782



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 158    ccgcgcggcgctgcagtgggc 178
              |||||||||||||||||||||
Sbjct: 594905 ccgcgcggcgctgcagtgggc 594925



to top

>dbj|AP003242.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
            clone:P0414E03
          Length = 139598

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 53/61 (86%)
 Strand = Plus / Minus

                                                                        
Query: 164  ggcgctgcagtgggcggcggacaacctgctccgctccggcgacaacctgctcctcctcca 223
            |||||||||||||||||| |||||||| ||||||   ||||||| |||  ||||||||||
Sbjct: 4614 ggcgctgcagtgggcggccgacaacctcctccgcaagggcgacaccctcgtcctcctcca 4555

             
Query: 224  c 224
            |
Sbjct: 4554 c 4554



to top

>dbj|AK108159.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-139-G10, full
           insert sequence
          Length = 799

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 53/61 (86%)
 Strand = Plus / Plus

                                                                       
Query: 164 ggcgctgcagtgggcggcggacaacctgctccgctccggcgacaacctgctcctcctcca 223
           |||||||||||||||||| |||||||| ||||||   ||||||| |||  ||||||||||
Sbjct: 153 ggcgctgcagtgggcggccgacaacctcctccgcaagggcgacaccctcgtcctcctcca 212

            
Query: 224 c 224
           |
Sbjct: 213 c 213



to top

>ref|NM_183532.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 552

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 158 ccgcgcggcgctgcagtgggc 178
           |||||||||||||||||||||
Sbjct: 48  ccgcgcggcgctgcagtgggc 68



to top

>gb|BT017342.1| Zea mays clone EL01N0323A01.c mRNA sequence
          Length = 525

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                    
Query: 277 ccggctcgcctttgatccccctctcggaattctctcaccct 317
           ||||||| || ||||| ||||||||||| |||||| |||||
Sbjct: 25  ccggctccccgttgattcccctctcggagttctctgaccct 65



to top

>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 159      cgcgcggcgctgcagtgggcg 179
                |||||||||||||||||||||
Sbjct: 17823333 cgcgcggcgctgcagtgggcg 17823313



to top

>dbj|AP003371.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1143G03
          Length = 137770

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 147   tcggaggggagccgcgcggcgctgc 171
             ||||||| |||||||||||||||||
Sbjct: 91255 tcggaggcgagccgcgcggcgctgc 91279



to top

>dbj|AP002882.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0439B06
          Length = 135991

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 158   ccgcgcggcgctgcagtgggc 178
             |||||||||||||||||||||
Sbjct: 69510 ccgcgcggcgctgcagtgggc 69530



to top

>dbj|AK120590.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013145N02, full
           insert sequence
          Length = 1700

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 159 cgcgcggcgctgcagtgggcg 179
           |||||||||||||||||||||
Sbjct: 250 cgcgcggcgctgcagtgggcg 270



to top

>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome
          Length = 3551823

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 210     ctgctcctcctccacgtcctc 230
               |||||||||||||||||||||
Sbjct: 3422778 ctgctcctcctccacgtcctc 3422798



to top

>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 159      cgcgcggcgctgcagtgggcg 179
                |||||||||||||||||||||
Sbjct: 17749652 cgcgcggcgctgcagtgggcg 17749632



to top

>emb|AL731787.3|CNS08C8B Oryza sativa chromosome 12, . BAC OSJNBb0014C10 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 142246

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 159   cgcgcggcgctgcagtgggcg 179
             |||||||||||||||||||||
Sbjct: 42531 cgcgcggcgctgcagtgggcg 42511



to top

>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome
          Length = 2584158

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 232     aggaccccgactacgagcag 251
               ||||||||||||||||||||
Sbjct: 1672853 aggaccccgactacgagcag 1672834



to top

>gb|AC149542.1| Populus trichocarpa clone Pop1-2C5, complete sequence
          Length = 146274

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                             
Query: 327   aagaaatatggggtgaagcctgatgctgaaac 358
             |||||||| ||| ||||||||||| |||||||
Sbjct: 39922 aagaaatacgggttgaagcctgatcctgaaac 39891



to top

>emb|AL953897.6| Human DNA sequence from clone RP11-56N19 on chromosome 1 Contains the
             3' end of a novel gene, the AGTRAP gene for angiotensin II
             receptor-associated protein, two novel genes, the MTHFR
             gene for 5,10-methylenetetrahydrofolate reductase (NADPH),
             the 5' end of the CLCN6 gene for chloride channel 6 and a
             CpG island, complete sequence
          Length = 102509

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 118   agaggtgggtgggcctggcggtgg 141
             |||||||||||||||||| |||||
Sbjct: 68354 agaggtgggtgggcctgggggtgg 68377



to top

>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 124     gggtgggcctggcggtggac 143
               ||||||||||||||||||||
Sbjct: 4963483 gggtgggcctggcggtggac 4963464


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,422,659
Number of Sequences: 3902068
Number of extensions: 2422659
Number of successful extensions: 55333
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 54903
Number of HSP's gapped (non-prelim): 423
length of query: 384
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 362
effective length of database: 17,147,199,772
effective search space: 6207286317464
effective search space used: 6207286317464
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top