ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd2j15 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY781348.1| Triticum aestivum USP family protein mRNA, complete cds Length = 902 Score = 486 bits (245), Expect = e-134 Identities = 275/285 (96%) Strand = Plus / Plus Query: 100 ccatggccgcggaaggcgagaggtgggtgggcctggcggtggacttctcggaggggagcc 159 ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 93 ccatggctgcggacggcgagaggtgggtgggcctggcggtggacttctcggaggggagcc 152 Query: 160 gcgcggcgctgcagtgggcggcggacaacctgctccgctccggcgacaacctgctcctcc 219 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 153 gcgcggcgctgcagtgggcggcggacaacctgctccgctccggcgacaacctgctcctcc 212 Query: 220 tccacgtcctcaaggaccccgactacgagcagggcgagaccctcctctgggaggcctccg 279 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 213 tgcacgtcctcaaggaccccgactacgagcagggcgagaccctcctctgggaggcctccg 272 Query: 280 gctcgcctttgatccccctctcggaattctctcacccttcggtcgcaaagaaatatgggg 339 ||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| Sbjct: 273 gctcgcctttgatccccctctcggagttctctcacccttcaactgcaaagaaatatgggg 332 Query: 340 tgaagcctgatgctgaaacactggacatgctcaacaccatagcta 384 ||||||||||||||||||| ||||||||||||||||| ||||||| Sbjct: 333 tgaagcctgatgctgaaacgctggacatgctcaacactatagcta 377
>ref|XM_475607.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 504 Score = 305 bits (154), Expect = 6e-80 Identities = 226/250 (90%) Strand = Plus / Plus Query: 121 ggtgggtgggcctggcggtggacttctcggaggggagccgcgcggcgctgcagtgggcgg 180 |||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 29 ggtgggtgggggcggcggtggacttctcggaggggagccgcgcggcgctgcggtgggcgg 88 Query: 181 cggacaacctgctccgctccggcgacaacctgctcctcctccacgtcctcaaggaccccg 240 ||||||||||||||||| |||||||| |||| ||||||||||||||||||||||||||| Sbjct: 89 cggacaacctgctccgcgccggcgaccacctcatcctcctccacgtcctcaaggaccccg 148 Query: 241 actacgagcagggcgagaccctcctctgggaggcctccggctcgcctttgatccccctct 300 ||||||||||||||||||||||||||||||||||| ||||||| || ||||| ||||||| Sbjct: 149 actacgagcagggcgagaccctcctctgggaggccaccggctccccattgattcccctct 208 Query: 301 cggaattctctcacccttcggtcgcaaagaaatatggggtgaagcctgatgctgaaacac 360 |||| |||||| | ||| | | |||||||||||||| | ||||||||||| |||||| Sbjct: 209 cggatttctctgaacctacaattgcaaagaaatatggagcaaagcctgatgccgaaacat 268 Query: 361 tggacatgct 370 |||||||||| Sbjct: 269 tggacatgct 278
>dbj|AK065771.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013041K03, full insert sequence Length = 777 Score = 305 bits (154), Expect = 6e-80 Identities = 226/250 (90%) Strand = Plus / Plus Query: 121 ggtgggtgggcctggcggtggacttctcggaggggagccgcgcggcgctgcagtgggcgg 180 |||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 117 ggtgggtgggggcggcggtggacttctcggaggggagccgcgcggcgctgcggtgggcgg 176 Query: 181 cggacaacctgctccgctccggcgacaacctgctcctcctccacgtcctcaaggaccccg 240 ||||||||||||||||| |||||||| |||| ||||||||||||||||||||||||||| Sbjct: 177 cggacaacctgctccgcgccggcgaccacctcatcctcctccacgtcctcaaggaccccg 236 Query: 241 actacgagcagggcgagaccctcctctgggaggcctccggctcgcctttgatccccctct 300 ||||||||||||||||||||||||||||||||||| ||||||| || ||||| ||||||| Sbjct: 237 actacgagcagggcgagaccctcctctgggaggccaccggctccccattgattcccctct 296 Query: 301 cggaattctctcacccttcggtcgcaaagaaatatggggtgaagcctgatgctgaaacac 360 |||| |||||| | ||| | | |||||||||||||| | ||||||||||| |||||| Sbjct: 297 cggatttctctgaacctacaattgcaaagaaatatggagcaaagcctgatgccgaaacat 356 Query: 361 tggacatgct 370 |||||||||| Sbjct: 357 tggacatgct 366
>dbj|AK103075.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033118C16, full insert sequence Length = 780 Score = 297 bits (150), Expect = 1e-77 Identities = 225/250 (90%) Strand = Plus / Plus Query: 121 ggtgggtgggcctggcggtggacttctcggaggggagccgcgcggcgctgcagtgggcgg 180 |||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 117 ggtgggtgggggcggcggtggacttctcggaggggagccgcgcggcgctgcggtgggcgg 176 Query: 181 cggacaacctgctccgctccggcgacaacctgctcctcctccacgtcctcaaggaccccg 240 ||||||||||||||||| |||||||| |||| ||||||||||||||| ||||||||||| Sbjct: 177 cggacaacctgctccgcgccggcgaccacctcatcctcctccacgtccccaaggaccccg 236 Query: 241 actacgagcagggcgagaccctcctctgggaggcctccggctcgcctttgatccccctct 300 ||||||||||||||||||||||||||||||||||| ||||||| || ||||| ||||||| Sbjct: 237 actacgagcagggcgagaccctcctctgggaggccaccggctccccattgattcccctct 296 Query: 301 cggaattctctcacccttcggtcgcaaagaaatatggggtgaagcctgatgctgaaacac 360 |||| |||||| | ||| | | |||||||||||||| | ||||||||||| |||||| Sbjct: 297 cggatttctctgaacctacaattgcaaagaaatatggagcaaagcctgatgccgaaacat 356 Query: 361 tggacatgct 370 |||||||||| Sbjct: 357 tggacatgct 366
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 252 bits (127), Expect = 7e-64 Identities = 154/163 (94%) Strand = Plus / Minus Query: 121 ggtgggtgggcctggcggtggacttctcggaggggagccgcgcggcgctgcagtgggcgg 180 |||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 3286734 ggtgggtgggggcggcggtggacttctcggaggggagccgcgcggcgctgcggtgggcgg 3286675 Query: 181 cggacaacctgctccgctccggcgacaacctgctcctcctccacgtcctcaaggaccccg 240 ||||||||||||||||| |||||||| |||| ||||||||||||||||||||||||||| Sbjct: 3286674 cggacaacctgctccgcgccggcgaccacctcatcctcctccacgtcctcaaggaccccg 3286615 Query: 241 actacgagcagggcgagaccctcctctgggaggcctccggctc 283 ||||||||||||||||||||||||||||||||||| ||||||| Sbjct: 3286614 actacgagcagggcgagaccctcctctgggaggccaccggctc 3286572 Score = 61.9 bits (31), Expect = 1e-06 Identities = 70/83 (84%) Strand = Plus / Minus Query: 288 ttgatccccctctcggaattctctcacccttcggtcgcaaagaaatatggggtgaagcct 347 ||||| ||||||||||| |||||| | ||| | | |||||||||||||| | |||||| Sbjct: 3285407 ttgattcccctctcggatttctctgaacctacaattgcaaagaaatatggagcaaagcct 3285348 Query: 348 gatgctgaaacactggacatgct 370 ||||| |||||| |||||||||| Sbjct: 3285347 gatgccgaaacattggacatgct 3285325
>gb|AC087425.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0676G05, complete sequence Length = 167317 Score = 252 bits (127), Expect = 7e-64 Identities = 154/163 (94%) Strand = Plus / Minus Query: 121 ggtgggtgggcctggcggtggacttctcggaggggagccgcgcggcgctgcagtgggcgg 180 |||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 80558 ggtgggtgggggcggcggtggacttctcggaggggagccgcgcggcgctgcggtgggcgg 80499 Query: 181 cggacaacctgctccgctccggcgacaacctgctcctcctccacgtcctcaaggaccccg 240 ||||||||||||||||| |||||||| |||| ||||||||||||||||||||||||||| Sbjct: 80498 cggacaacctgctccgcgccggcgaccacctcatcctcctccacgtcctcaaggaccccg 80439 Query: 241 actacgagcagggcgagaccctcctctgggaggcctccggctc 283 ||||||||||||||||||||||||||||||||||| ||||||| Sbjct: 80438 actacgagcagggcgagaccctcctctgggaggccaccggctc 80396 Score = 61.9 bits (31), Expect = 1e-06 Identities = 70/83 (84%) Strand = Plus / Minus Query: 288 ttgatccccctctcggaattctctcacccttcggtcgcaaagaaatatggggtgaagcct 347 ||||| ||||||||||| |||||| | ||| | | |||||||||||||| | |||||| Sbjct: 79231 ttgattcccctctcggatttctctgaacctacaattgcaaagaaatatggagcaaagcct 79172 Query: 348 gatgctgaaacactggacatgct 370 ||||| |||||| |||||||||| Sbjct: 79171 gatgccgaaacattggacatgct 79149
>gb|AY596596.1| Saccharum officinarum clone SCCCLR1072E04, complete sequence Length = 821 Score = 214 bits (108), Expect = 2e-52 Identities = 180/204 (88%) Strand = Plus / Plus Query: 114 ggcgagaggtgggtgggcctggcggtggacttctcggaggggagccgcgcggcgctgcag 173 ||||||||||||||||| |||||| ||||||||||||||||||||| |||||||||| | Sbjct: 103 ggcgagaggtgggtggggctggcgacggacttctcggaggggagccgggcggcgctgcgg 162 Query: 174 tgggcggcggacaacctgctccgctccggcgacaacctgctcctcctccacgtcctcaag 233 |||||||||| ||||||||| ||| |||||||| ||||||| || || |||||| ||||| Sbjct: 163 tgggcggcggccaacctgctgcgcgccggcgaccacctgctgctgctgcacgtcatcaag 222 Query: 234 gaccccgactacgagcagggcgagaccctcctctgggaggcctccggctcgcctttgatc 293 || ||||||||||||||| ||||| || |||||||||| || ||||||| || ||||| Sbjct: 223 gagcccgactacgagcagagcgaggccatcctctgggaatccaccggctccccgttgatt 282 Query: 294 cccctctcggaattctctcaccct 317 |||||||||||||||||| ||||| Sbjct: 283 cccctctcggaattctctgaccct 306
>gb|AY107821.1| Zea mays PCO148543 mRNA sequence Length = 910 Score = 190 bits (96), Expect = 2e-45 Identities = 177/204 (86%) Strand = Plus / Plus Query: 114 ggcgagaggtgggtgggcctggcggtggacttctcggaggggagccgcgcggcgctgcag 173 ||||||||||||||||| || || ||||||||||||||||||||| |||||||||| | Sbjct: 184 ggcgagaggtgggtggggctagcaacggacttctcggaggggagccgggcggcgctgcgg 243 Query: 174 tgggcggcggacaacctgctccgctccggcgacaacctgctcctcctccacgtcctcaag 233 |||||||||| ||||||||| || |||||||| ||||||| || || |||||| ||||| Sbjct: 244 tgggcggcggccaacctgctgcgagccggcgaccacctgctgctgctgcacgtcatcaag 303 Query: 234 gaccccgactacgagcagggcgagaccctcctctgggaggcctccggctcgcctttgatc 293 || ||||||||||||||| ||||| || |||||||||| || ||||||| || ||||| Sbjct: 304 gagcccgactacgagcagagcgaggccatcctctgggaatccaccggctccccgttgatt 363 Query: 294 cccctctcggaattctctcaccct 317 |||||||||||||||||| ||||| Sbjct: 364 cccctctcggaattctctgaccct 387
>ref|XM_463477.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 489 Score = 58.0 bits (29), Expect = 2e-05 Identities = 53/61 (86%) Strand = Plus / Plus Query: 164 ggcgctgcagtgggcggcggacaacctgctccgctccggcgacaacctgctcctcctcca 223 |||||||||||||||||| |||||||| |||||| ||||||| ||| |||||||||| Sbjct: 66 ggcgctgcagtgggcggccgacaacctcctccgcaagggcgacaccctcgtcctcctcca 125 Query: 224 c 224 | Sbjct: 126 c 126
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 58.0 bits (29), Expect = 2e-05 Identities = 53/61 (86%) Strand = Plus / Minus Query: 164 ggcgctgcagtgggcggcggacaacctgctccgctccggcgacaacctgctcctcctcca 223 |||||||||||||||||| |||||||| |||||| ||||||| ||| |||||||||| Sbjct: 36491239 ggcgctgcagtgggcggccgacaacctcctccgcaagggcgacaccctcgtcctcctcca 36491180 Query: 224 c 224 | Sbjct: 36491179 c 36491179 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 147 tcggaggggagccgcgcggcgctgc 171 ||||||| ||||||||||||||||| Sbjct: 32411758 tcggaggcgagccgcgcggcgctgc 32411782 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 158 ccgcgcggcgctgcagtgggc 178 ||||||||||||||||||||| Sbjct: 594905 ccgcgcggcgctgcagtgggc 594925
>dbj|AP003242.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0414E03 Length = 139598 Score = 58.0 bits (29), Expect = 2e-05 Identities = 53/61 (86%) Strand = Plus / Minus Query: 164 ggcgctgcagtgggcggcggacaacctgctccgctccggcgacaacctgctcctcctcca 223 |||||||||||||||||| |||||||| |||||| ||||||| ||| |||||||||| Sbjct: 4614 ggcgctgcagtgggcggccgacaacctcctccgcaagggcgacaccctcgtcctcctcca 4555 Query: 224 c 224 | Sbjct: 4554 c 4554
>dbj|AK108159.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-139-G10, full insert sequence Length = 799 Score = 58.0 bits (29), Expect = 2e-05 Identities = 53/61 (86%) Strand = Plus / Plus Query: 164 ggcgctgcagtgggcggcggacaacctgctccgctccggcgacaacctgctcctcctcca 223 |||||||||||||||||| |||||||| |||||| ||||||| ||| |||||||||| Sbjct: 153 ggcgctgcagtgggcggccgacaacctcctccgcaagggcgacaccctcgtcctcctcca 212 Query: 224 c 224 | Sbjct: 213 c 213
>ref|NM_183532.1| Oryza sativa (japonica cultivar-group), mRNA Length = 552 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 158 ccgcgcggcgctgcagtgggc 178 ||||||||||||||||||||| Sbjct: 48 ccgcgcggcgctgcagtgggc 68
>gb|BT017342.1| Zea mays clone EL01N0323A01.c mRNA sequence Length = 525 Score = 42.1 bits (21), Expect = 1.3 Identities = 36/41 (87%) Strand = Plus / Plus Query: 277 ccggctcgcctttgatccccctctcggaattctctcaccct 317 ||||||| || ||||| ||||||||||| |||||| ||||| Sbjct: 25 ccggctccccgttgattcccctctcggagttctctgaccct 65
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 159 cgcgcggcgctgcagtgggcg 179 ||||||||||||||||||||| Sbjct: 17823333 cgcgcggcgctgcagtgggcg 17823313
>dbj|AP003371.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1143G03 Length = 137770 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 147 tcggaggggagccgcgcggcgctgc 171 ||||||| ||||||||||||||||| Sbjct: 91255 tcggaggcgagccgcgcggcgctgc 91279
>dbj|AP002882.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0439B06 Length = 135991 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 158 ccgcgcggcgctgcagtgggc 178 ||||||||||||||||||||| Sbjct: 69510 ccgcgcggcgctgcagtgggc 69530
>dbj|AK120590.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013145N02, full insert sequence Length = 1700 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 159 cgcgcggcgctgcagtgggcg 179 ||||||||||||||||||||| Sbjct: 250 cgcgcggcgctgcagtgggcg 270
>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome Length = 3551823 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 210 ctgctcctcctccacgtcctc 230 ||||||||||||||||||||| Sbjct: 3422778 ctgctcctcctccacgtcctc 3422798
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 159 cgcgcggcgctgcagtgggcg 179 ||||||||||||||||||||| Sbjct: 17749652 cgcgcggcgctgcagtgggcg 17749632
>emb|AL731787.3|CNS08C8B Oryza sativa chromosome 12, . BAC OSJNBb0014C10 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 142246 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 159 cgcgcggcgctgcagtgggcg 179 ||||||||||||||||||||| Sbjct: 42531 cgcgcggcgctgcagtgggcg 42511
>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome Length = 2584158 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 232 aggaccccgactacgagcag 251 |||||||||||||||||||| Sbjct: 1672853 aggaccccgactacgagcag 1672834
>gb|AC149542.1| Populus trichocarpa clone Pop1-2C5, complete sequence Length = 146274 Score = 40.1 bits (20), Expect = 5.1 Identities = 29/32 (90%) Strand = Plus / Minus Query: 327 aagaaatatggggtgaagcctgatgctgaaac 358 |||||||| ||| ||||||||||| ||||||| Sbjct: 39922 aagaaatacgggttgaagcctgatcctgaaac 39891
>emb|AL953897.6| Human DNA sequence from clone RP11-56N19 on chromosome 1 Contains the 3' end of a novel gene, the AGTRAP gene for angiotensin II receptor-associated protein, two novel genes, the MTHFR gene for 5,10-methylenetetrahydrofolate reductase (NADPH), the 5' end of the CLCN6 gene for chloride channel 6 and a CpG island, complete sequence Length = 102509 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 118 agaggtgggtgggcctggcggtgg 141 |||||||||||||||||| ||||| Sbjct: 68354 agaggtgggtgggcctgggggtgg 68377
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 124 gggtgggcctggcggtggac 143 |||||||||||||||||||| Sbjct: 4963483 gggtgggcctggcggtggac 4963464 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,422,659 Number of Sequences: 3902068 Number of extensions: 2422659 Number of successful extensions: 55333 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 27 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 54903 Number of HSP's gapped (non-prelim): 423 length of query: 384 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 362 effective length of database: 17,147,199,772 effective search space: 6207286317464 effective search space used: 6207286317464 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
