ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd2j12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1GFRA4_CHICK (O93512) GDNF family receptor alpha-4 precursor (GFR... 32 1.0
2ADCY6_HUMAN (O43306) Adenylate cyclase type 6 (EC 4.6.1.1) (Aden... 30 4.0
3ADCY6_CANFA (P30804) Adenylate cyclase type 6 (EC 4.6.1.1) (Aden... 30 5.2
4TOP6B_PYRKO (Q5JH81) Type II DNA topoisomerase VI subunit B (EC ... 29 8.9

>GFRA4_CHICK (O93512) GDNF family receptor alpha-4 precursor (GFR-alpha-4)|
          Length = 431

 Score = 32.0 bits (71), Expect = 1.0
 Identities = 22/73 (30%), Positives = 32/73 (43%)
 Frame = +3

Query: 225 STCKQAHRQPTLQDSSFQVY*SHEKLQCQVPWDSCMEH**LHTQYCEDPFSD*ESRQTPD 404
           + C +  RQ  +   S++   S EK  C  P DSC E+    ++Y E  F+   S QT  
Sbjct: 211 TACAERRRQTIVPACSYE---SKEKPNCLAPLDSCRENYVCRSRYAEFQFNCQPSLQTA- 266

Query: 405 LHSTCNLGRHGCC 443
             S C    +  C
Sbjct: 267 --SGCRRDSYAAC 277



to top

>ADCY6_HUMAN (O43306) Adenylate cyclase type 6 (EC 4.6.1.1) (Adenylate cyclase|
           type VI) (ATP pyrophosphate-lyase 6) (Ca(2+)-inhibitable
           adenylyl cyclase)
          Length = 1168

 Score = 30.0 bits (66), Expect = 4.0
 Identities = 15/39 (38%), Positives = 27/39 (69%)
 Frame = -2

Query: 392 P*FLIGKWVLAVLSMQSLMLHATVPGHLALQFLVGLVHL 276
           P + IG  +L++L+  S+ LH +  G LA+ F++GL++L
Sbjct: 813 PEYFIGNMLLSLLA-SSVFLHISSIGKLAMIFVLGLIYL 850



to top

>ADCY6_CANFA (P30804) Adenylate cyclase type 6 (EC 4.6.1.1) (Adenylate cyclase|
           type VI) (ATP pyrophosphate-lyase 6) (Ca(2+)-inhibitable
           adenylyl cyclase)
          Length = 1165

 Score = 29.6 bits (65), Expect = 5.2
 Identities = 14/39 (35%), Positives = 27/39 (69%)
 Frame = -2

Query: 392 P*FLIGKWVLAVLSMQSLMLHATVPGHLALQFLVGLVHL 276
           P + +G  +L++L+  S+ LH +  G LA+ F++GL++L
Sbjct: 810 PEYFVGNMLLSLLA-SSVFLHISSIGKLAMIFVLGLIYL 847



to top

>TOP6B_PYRKO (Q5JH81) Type II DNA topoisomerase VI subunit B (EC 5.99.1.3)|
           (TopoVI-B)
          Length = 567

 Score = 28.9 bits (63), Expect = 8.9
 Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 5/48 (10%)
 Frame = +1

Query: 349 ILNTARTHFPIRNQGKHPTCTAHAI-----LAGMDAALRIEGALRGKH 477
           ++N    H P    GK    +   I     LA MDAA R++  L GKH
Sbjct: 457 MINVVSVHVPYTGTGKQSIASVDEIYNEIRLAIMDAARRLQTYLSGKH 504


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,683,014
Number of Sequences: 219361
Number of extensions: 1322716
Number of successful extensions: 3230
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3230
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3927707336
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top