Clone Name | basd2j12 |
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Clone Library Name | barley_pub |
No. | Definition | Score (bits) |
E Value |
1 | GFRA4_CHICK (O93512) GDNF family receptor alpha-4 precursor (GFR... | 32 | 1.0 | 2 | ADCY6_HUMAN (O43306) Adenylate cyclase type 6 (EC 4.6.1.1) (Aden... | 30 | 4.0 | 3 | ADCY6_CANFA (P30804) Adenylate cyclase type 6 (EC 4.6.1.1) (Aden... | 30 | 5.2 | 4 | TOP6B_PYRKO (Q5JH81) Type II DNA topoisomerase VI subunit B (EC ... | 29 | 8.9 |
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>GFRA4_CHICK (O93512) GDNF family receptor alpha-4 precursor (GFR-alpha-4)| Length = 431 Score = 32.0 bits (71), Expect = 1.0 Identities = 22/73 (30%), Positives = 32/73 (43%) Frame = +3 Query: 225 STCKQAHRQPTLQDSSFQVY*SHEKLQCQVPWDSCMEH**LHTQYCEDPFSD*ESRQTPD 404 + C + RQ + S++ S EK C P DSC E+ ++Y E F+ S QT Sbjct: 211 TACAERRRQTIVPACSYE---SKEKPNCLAPLDSCRENYVCRSRYAEFQFNCQPSLQTA- 266 Query: 405 LHSTCNLGRHGCC 443 S C + C Sbjct: 267 --SGCRRDSYAAC 277
>ADCY6_HUMAN (O43306) Adenylate cyclase type 6 (EC 4.6.1.1) (Adenylate cyclase| type VI) (ATP pyrophosphate-lyase 6) (Ca(2+)-inhibitable adenylyl cyclase) Length = 1168 Score = 30.0 bits (66), Expect = 4.0 Identities = 15/39 (38%), Positives = 27/39 (69%) Frame = -2 Query: 392 P*FLIGKWVLAVLSMQSLMLHATVPGHLALQFLVGLVHL 276 P + IG +L++L+ S+ LH + G LA+ F++GL++L Sbjct: 813 PEYFIGNMLLSLLA-SSVFLHISSIGKLAMIFVLGLIYL 850
>ADCY6_CANFA (P30804) Adenylate cyclase type 6 (EC 4.6.1.1) (Adenylate cyclase| type VI) (ATP pyrophosphate-lyase 6) (Ca(2+)-inhibitable adenylyl cyclase) Length = 1165 Score = 29.6 bits (65), Expect = 5.2 Identities = 14/39 (35%), Positives = 27/39 (69%) Frame = -2 Query: 392 P*FLIGKWVLAVLSMQSLMLHATVPGHLALQFLVGLVHL 276 P + +G +L++L+ S+ LH + G LA+ F++GL++L Sbjct: 810 PEYFVGNMLLSLLA-SSVFLHISSIGKLAMIFVLGLIYL 847
>TOP6B_PYRKO (Q5JH81) Type II DNA topoisomerase VI subunit B (EC 5.99.1.3)| (TopoVI-B) Length = 567 Score = 28.9 bits (63), Expect = 8.9 Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 5/48 (10%) Frame = +1 Query: 349 ILNTARTHFPIRNQGKHPTCTAHAI-----LAGMDAALRIEGALRGKH 477 ++N H P GK + I LA MDAA R++ L GKH Sbjct: 457 MINVVSVHVPYTGTGKQSIASVDEIYNEIRLAIMDAARRLQTYLSGKH 504 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 69,683,014 Number of Sequences: 219361 Number of extensions: 1322716 Number of successful extensions: 3230 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 3152 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3230 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3927707336 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)