ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd2j08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ACF_RAT (Q923K9) APOBEC1 complementation factor (APOBEC1-stimula... 69 8e-12
2ACF_MOUSE (Q5YD48) APOBEC1 complementation factor (APOBEC1-stimu... 68 1e-11
3ACF_HUMAN (Q9NQ94) APOBEC1 complementation factor (APOBEC1-stimu... 67 2e-11
4ACF_PONPY (Q5R9H4) APOBEC1 complementation factor (APOBEC1-stimu... 67 3e-11
5HNRPQ_MOUSE (Q7TMK9) Heterogeneous nuclear ribonucleoprotein Q (... 66 4e-11
6HNRPQ_HUMAN (O60506) Heterogeneous nuclear ribonucleoprotein Q (... 66 4e-11
7HNRPQ_RAT (Q7TP47) Heterogeneous nuclear ribonucleoprotein Q (hn... 66 4e-11
8HNRPR_HUMAN (O43390) Heterogeneous nuclear ribonucleoprotein R (... 65 9e-11
9CSTFT_MOUSE (Q8C7E9) Cleavage stimulation factor, 64 kDa subunit... 63 4e-10
10CSTFT_HUMAN (Q9H0L4) Cleavage stimulation factor, 64 kDa subunit... 63 4e-10
11CSTF2_PONPY (Q5RDA3) Cleavage stimulation factor, 64 kDa subunit... 62 6e-10
12CSTF2_HUMAN (P33240) Cleavage stimulation factor, 64 kDa subunit... 62 6e-10
13CSTF2_BOVIN (Q8HXM1) Cleavage stimulation factor, 64 kDa subunit... 62 6e-10
14CSTF2_MOUSE (Q8BIQ5) Cleavage stimulation factor, 64 kDa subunit... 62 6e-10
15PABP5_ARATH (Q05196) Polyadenylate-binding protein 5 (Poly(A)-bi... 62 1e-09
16TADBP_MOUSE (Q921F2) TAR DNA-binding protein 43 (TDP-43) 59 6e-09
17TADBP_HUMAN (Q13148) TAR DNA-binding protein 43 (TDP-43) 59 6e-09
18RBM23_HUMAN (Q86U06) Probable RNA-binding protein 23 (RNA-bindin... 59 6e-09
19RBMX2_MOUSE (Q8R0F5) RNA-binding motif protein, X-linked 2 59 6e-09
20SXL_CHRRU (O97018) Sex-lethal homolog 59 8e-09
21RBMX2_HUMAN (Q9Y388) RNA-binding motif protein, X-linked 2 58 1e-08
22RNPC2_MOUSE (Q8VH51) RNA-binding region-containing protein 2 (Co... 58 1e-08
23RNPC2_HUMAN (Q14498) RNA-binding region-containing protein 2 (He... 58 1e-08
24PABP_SCHPO (P31209) Polyadenylate-binding protein (Poly(A)-bindi... 58 1e-08
25SXL_MUSDO (O17310) Sex-lethal homolog 58 1e-08
26TRA2B_RAT (P62997) Arginine/serine-rich splicing factor 10 (Tran... 58 1e-08
27TRA2B_MOUSE (P62996) Arginine/serine-rich splicing factor 10 (Tr... 58 1e-08
28TRA2B_HUMAN (P62995) Arginine/serine-rich splicing factor 10 (Tr... 58 1e-08
29PABP_YEAST (P04147) Polyadenylate-binding protein, cytoplasmic a... 57 2e-08
30RBM34_RAT (Q5M9F1) RNA-binding protein 34 (RNA-binding motif pro... 57 2e-08
31GRP2_ARATH (Q9SVM8) Glycine-rich RNA-binding protein 2, mitochon... 57 2e-08
32DND1_XENLA (Q6DCB7) Dead end protein homolog 1 57 3e-08
33MYEF2_MOUSE (Q8C854) Myelin expression factor 2 (MyEF-2) (MEF-2) 57 3e-08
34RBM34_HUMAN (P42696) RNA-binding protein 34 (RNA-binding motif p... 56 4e-08
35PABP4_HUMAN (Q13310) Polyadenylate-binding protein 4 (Poly(A)-bi... 56 4e-08
36RBM34_MOUSE (Q8C5L7) RNA-binding protein 34 (RNA-binding motif p... 56 4e-08
37NONO_MOUSE (Q99K48) Non-POU domain-containing octamer-binding pr... 56 5e-08
38NONO_RAT (Q5FVM4) Non-POU domain-containing octamer-binding prot... 56 5e-08
39NONO_PONPY (Q5RFL9) Non-POU domain-containing octamer-binding pr... 56 5e-08
40NONO_HUMAN (Q15233) Non-POU domain-containing octamer-binding pr... 56 5e-08
41HNRPD_MOUSE (Q60668) Heterogeneous nuclear ribonucleoprotein D0 ... 56 5e-08
42MYEF2_HUMAN (Q9P2K5) Myelin expression factor 2 (MyEF-2) (MST156) 56 5e-08
43PABPX_ARATH (Q9ZQA8) Probable polyadenylate-binding protein At2g... 56 5e-08
44HNRPD_HUMAN (Q14103) Heterogeneous nuclear ribonucleoprotein D0 ... 55 7e-08
45DAZP1_XENLA (Q98SJ2) DAZ-associated protein 1 (Deleted in azoosp... 55 1e-07
46DAZP1_MOUSE (Q9JII5) DAZ-associated protein 1 (Deleted in azoosp... 55 1e-07
47DAZP1_HUMAN (Q96EP5) DAZ-associated protein 1 (Deleted in azoosp... 55 1e-07
48HNRPD_RAT (Q9JJ54) Heterogeneous nuclear ribonucleoprotein D0 (h... 55 1e-07
49PABP2_ARATH (P42731) Polyadenylate-binding protein 2 (Poly(A)-bi... 54 2e-07
50ROC1_NICSY (Q08935) 29 kDa ribonucleoprotein A, chloroplast prec... 54 2e-07
51ELAV4_HUMAN (P26378) ELAV-like protein 4 (Paraneoplastic encepha... 54 2e-07
52ELAV4_RAT (O09032) ELAV-like protein 4 (Paraneoplastic encephalo... 54 2e-07
53RBM3_HUMAN (P98179) Putative RNA-binding protein 3 (RNA-binding ... 54 2e-07
54PABP3_ARATH (O64380) Polyadenylate-binding protein 3 (Poly(A)-bi... 54 2e-07
55GRP2_SORBI (Q99070) Glycine-rich RNA-binding protein 2 54 2e-07
56ELAV4_MOUSE (Q61701) ELAV-like protein 4 (Paraneoplastic encepha... 54 2e-07
57RT19_ARATH (P39697) 40S ribosomal protein S19, mitochondrial pre... 54 3e-07
58ELAV2_MOUSE (Q60899) ELAV-like protein 2 (Hu-antigen B) (HuB) (E... 53 3e-07
59PABP1_RAT (Q9EPH8) Polyadenylate-binding protein 1 (Poly(A)-bind... 53 3e-07
60PABP1_MOUSE (P29341) Polyadenylate-binding protein 1 (Poly(A)-bi... 53 3e-07
61ELAV2_RAT (Q8CH84) ELAV-like protein 2 (Hu-antigen B) (HuB) 53 3e-07
62ELAV2_PONPY (Q5R9Z6) ELAV-like protein 2 53 3e-07
63ELAV2_HUMAN (Q12926) ELAV-like protein 2 (Hu-antigen B) (HuB) (E... 53 3e-07
64GRP8_ARATH (Q03251) Glycine-rich RNA-binding protein 8 (CCR1 pro... 53 3e-07
65GRP10_BRANA (Q05966) Glycine-rich RNA-binding protein 10 53 3e-07
66HRP1_YEAST (Q99383) Nuclear polyadenylated RNA-binding protein 4... 53 4e-07
67SF3B4_HUMAN (Q15427) Splicing factor 3B subunit 4 (Spliceosome-a... 53 4e-07
68BOLL_MACFA (Q8WP23) Protein boule-like 53 4e-07
69BOLL_HUMAN (Q8N9W6) Protein boule-like 53 4e-07
70TRA2A_HUMAN (Q13595) Transformer-2 protein homolog (TRA-2 alpha) 52 6e-07
71GRP2_SINAL (P49311) Glycine-rich RNA-binding protein GRP2A 52 6e-07
72PABP_DROME (P21187) Polyadenylate-binding protein (Poly(A)-bindi... 52 6e-07
73GRPA_MAIZE (P10979) Glycine-rich RNA-binding, abscisic acid-indu... 52 6e-07
74GRP1_DAUCA (Q03878) Glycine-rich RNA-binding protein 52 6e-07
75TRA2A_MOUSE (Q6PFR5) Transformer-2 protein homolog (TRA-2 alpha) 52 6e-07
76BOLL_MOUSE (Q924M5) Protein boule-like 52 6e-07
77PABP3_HUMAN (Q9H361) Polyadenylate-binding protein 3 (Poly(A)-bi... 52 8e-07
78PABP1_HUMAN (P11940) Polyadenylate-binding protein 1 (Poly(A)-bi... 52 8e-07
79PABP1_BOVIN (P61286) Polyadenylate-binding protein 1 (Poly(A)-bi... 52 8e-07
80IST3_YEAST (P40565) U2 snRNP component IST3 (U2 snRNP protein SN... 52 8e-07
81ROC2_NICPL (P49314) 31 kDa ribonucleoprotein, chloroplast precur... 52 8e-07
82RBM3_MOUSE (O89086) Putative RNA-binding protein 3 (RNA-binding ... 52 1e-06
83ROC2_NICSY (Q08937) 29 kDa ribonucleoprotein B, chloroplast prec... 52 1e-06
84EPABA_XENLA (Q98SP8) Embryonic polyadenylate-binding protein-A (... 52 1e-06
85YP85_CAEEL (Q09442) Putative RNA-binding protein C08B11.5 52 1e-06
86RBY1A_HUMAN (Q15414) RNA-binding motif protein, Y chromosome, fa... 52 1e-06
87RNPC1_HUMAN (Q9H0Z9) RNA-binding region-containing protein 1 (HS... 52 1e-06
88RNPC1_MOUSE (Q62176) RNA-binding region-containing protein 1 (ss... 51 1e-06
89EPAB_XENTR (Q6DEY7) Embryonic polyadenylate-binding protein (Emb... 51 1e-06
90HNRPM_HUMAN (P52272) Heterogeneous nuclear ribonucleoprotein M (... 51 2e-06
91PABPA_XENLA (P20965) Polyadenylate-binding protein 1-A (Poly(A)-... 51 2e-06
92HNRPM_MOUSE (Q9D0E1) Heterogeneous nuclear ribonucleoprotein M (... 51 2e-06
93MRD1_YEAST (Q06106) Multiple RNA-binding domain-containing prote... 51 2e-06
94HNRPG_HUMAN (P38159) Heterogeneous nuclear ribonucleoprotein G (... 51 2e-06
95HNRPM_RAT (Q62826) Heterogeneous nuclear ribonucleoprotein M (hn... 51 2e-06
96ELAV3_MOUSE (Q60900) ELAV-like protein 3 (Hu-antigen C) (HuC) 51 2e-06
97ELAV3_HUMAN (Q14576) ELAV-like protein 3 (Hu-antigen C) (HuC) (P... 51 2e-06
98MRD1_CANAL (Q5AJS6) Multiple RNA-binding domain-containing prote... 51 2e-06
99ELAV1_HUMAN (Q15717) ELAV-like protein 1 (Hu-antigen R) (HuR) 51 2e-06
100ROAA_HUMAN (Q99729) Heterogeneous nuclear ribonucleoprotein A/B ... 51 2e-06
101ROC3_ARATH (Q04836) 31 kDa ribonucleoprotein, chloroplast precur... 50 2e-06
102SXL_MEGSC (O01671) Sex-lethal homolog 50 2e-06
103GRP1_SINAL (P49310) Glycine-rich RNA-binding protein GRP1A 50 3e-06
104EPABB_XENLA (Q6GR16) Embryonic polyadenylate-binding protein-B (... 50 3e-06
105ROA0_HUMAN (Q13151) Heterogeneous nuclear ribonucleoprotein A0 (... 50 3e-06
106CIRBP_PONPY (Q5RF83) Cold-inducible RNA-binding protein (Glycine... 50 3e-06
107CIRBP_HUMAN (Q14011) Cold-inducible RNA-binding protein (Glycine... 50 3e-06
108DAZL_CHICK (Q804A9) Deleted in azoospermia-like (DAZ-like protein) 50 3e-06
109ROC1_NICPL (P49313) 30 kDa ribonucleoprotein, chloroplast precur... 50 3e-06
110DAZ1_CAEEL (Q20870) DAZ protein 1 50 4e-06
111BOULE_DROME (Q24207) Protein boule 50 4e-06
112CIRBP_RAT (P60825) Cold-inducible RNA-binding protein (Glycine-r... 50 4e-06
113CIRBP_MOUSE (P60824) Cold-inducible RNA-binding protein (Glycine... 50 4e-06
114CIRBP_CRIGR (P60826) Cold-inducible RNA-binding protein (Glycine... 50 4e-06
115RB27C_DROME (P48809) Heterogeneous nuclear ribonucleoprotein 27C... 50 4e-06
116HNRPG_RAT (P84586) Heterogeneous nuclear ribonucleoprotein G (hn... 50 4e-06
117SAP49_SCHPO (O14102) Spliceosome-associated protein 49 49 5e-06
118SFPQ_MOUSE (Q8VIJ6) Splicing factor, proline- and glutamine-rich... 49 5e-06
119SFPQ_HUMAN (P23246) Splicing factor, proline- and glutamine-rich... 49 5e-06
120MRD1_NEUCR (Q7SG09) Multiple RNA-binding domain-containing prote... 49 5e-06
121MRD1_KLULA (Q6CQR6) Multiple RNA-binding domain-containing prote... 49 5e-06
122ELAV1_MOUSE (P70372) ELAV-like protein 1 (Hu-antigen R) (HuR) (E... 49 5e-06
123RB87F_DROME (P48810) Heterogeneous nuclear ribonucleoprotein 87F... 49 5e-06
124ROAA_MOUSE (Q99020) Heterogeneous nuclear ribonucleoprotein A/B ... 49 6e-06
125NUCL_CHICK (P15771) Nucleolin (Protein C23) 49 6e-06
126GBP2_YEAST (P25555) Single-strand telomeric DNA-binding protein ... 49 6e-06
127GRP7_ARATH (Q03250) Glycine-rich RNA-binding protein 7 49 6e-06
128DAZL_MACFA (Q95192) Deleted in azoospermia-like (DAZ-like autoso... 49 6e-06
129GAR2_SCHPO (P41891) Protein gar2 49 6e-06
130NUCL_XENLA (P20397) Nucleolin (Protein C23) 49 6e-06
131MRD1_CANGA (Q6FXP4) Multiple RNA-binding domain-containing prote... 49 6e-06
132ROC4_NICSY (P19683) 31 kDa ribonucleoprotein, chloroplast precursor 49 8e-06
133CTF1_SCHPO (O43040) Cleavage and termination factor 1 (Transcrip... 49 8e-06
134RBM5_HUMAN (P52756) RNA-binding protein 5 (RNA-binding motif pro... 49 8e-06
135RBM7_HUMAN (Q9Y580) RNA-binding protein 7 (RNA-binding motif pro... 49 8e-06
136ELAV_DROME (P16914) Protein elav (Embryonic lethal abnormal visu... 49 8e-06
137DAZL_HUMAN (Q92904) Deleted in azoospermia-like (DAZ-like autoso... 49 8e-06
138HNRPG_MOUSE (O35479) Heterogeneous nuclear ribonucleoprotein G (... 49 8e-06
139FCA_ARATH (O04425) Flowering time control protein FCA 49 8e-06
140ELAV_DROVI (P23241) Protein elav (Embryonic lethal abnormal visu... 49 8e-06
141ROC5_NICSY (P19684) 33 kDa ribonucleoprotein, chloroplast precursor 48 1e-05
142ROA1_CAEEL (Q22037) Heterogeneous nuclear ribonucleoprotein A1 48 1e-05
143CUGB1_MOUSE (P28659) CUG triplet repeat RNA-binding protein 1 (C... 48 1e-05
144CUGB1_HUMAN (Q92879) CUG triplet repeat RNA-binding protein 1 (C... 48 1e-05
145NUCL_MESAU (P08199) Nucleolin (Protein C23) 48 1e-05
146TRA2_DROME (P19018) Transformer-2 sex-determining protein 48 1e-05
147SXL_CERCA (O61374) Sex-lethal homolog (CCSXL) 48 1e-05
148RBM7_BOVIN (Q3MHY8) RNA-binding protein 7 (RNA-binding motif pro... 48 1e-05
149SGN1_YEAST (P40561) RNA-binding protein SGN1 48 1e-05
150DAZL_CALJA (Q9BGN8) Deleted in azoospermia-like (DAZ-like autoso... 48 1e-05
151YG41_SCHPO (O60176) Hypothetical RNA-binding protein C23E6.01c i... 47 2e-05
152NUCL_HUMAN (P19338) Nucleolin (Protein C23) 47 2e-05
153RBM7_MOUSE (Q9CQT2) RNA-binding protein 7 (RNA-binding motif pro... 47 2e-05
154PUB1_YEAST (P32588) Nuclear and cytoplasmic polyadenylated RNA-b... 47 2e-05
155MRD1_USTMA (Q4PC17) Multiple RNA-binding domain-containing prote... 47 2e-05
156NUCL_MACFA (Q4R4J7) Nucleolin 47 2e-05
157PABP5_PONPY (P60050) Polyadenylate-binding protein 5 (Poly(A)-bi... 47 2e-05
158PABP5_PANTR (P60049) Polyadenylate-binding protein 5 (Poly(A)-bi... 47 2e-05
159PABP5_MACMU (Q7JGR2) Polyadenylate-binding protein 5 (Poly(A)-bi... 47 2e-05
160PABP5_HYLLA (P60048) Polyadenylate-binding protein 5 (Poly(A)-bi... 47 2e-05
161PABP5_HUMAN (Q96DU9) Polyadenylate-binding protein 5 (Poly(A)-bi... 47 2e-05
162PABP5_GORGO (P60047) Polyadenylate-binding protein 5 (Poly(A)-bi... 47 2e-05
163NUCL_PONPY (Q5RF26) Nucleolin 47 2e-05
164ROC1_ARATH (Q9ZUU4) Putative ribonucleoprotein At2g37220, chloro... 47 2e-05
165RBM11_HUMAN (P57052) Putative RNA-binding protein 11 (RNA-bindin... 47 2e-05
166RBM8A_DROME (Q9V535) RNA-binding protein 8A (Protein tsunagi) 47 2e-05
167NSR1_YEAST (P27476) Nuclear localization sequence-binding protei... 47 2e-05
168PABPB_XENLA (Q6IP09) Polyadenylate-binding protein 1-B (Poly(A)-... 47 2e-05
169DAZL_MOUSE (Q64368) Deleted in azoospermia-like (DAZ-like autoso... 47 2e-05
170U2AF2_CAEBR (P90727) Splicing factor U2AF 65 kDa subunit (U2 aux... 47 3e-05
171MRD1_ASPFU (Q4WJT7) Multiple RNA-binding domain-containing prote... 47 3e-05
172ROC1_SPIOL (P28644) 28 kDa ribonucleoprotein, chloroplast (28RNP) 46 4e-05
173SQD_DROME (Q08473) RNA-binding protein squid (Heterogeneous nucl... 46 4e-05
174TIA1_MOUSE (P52912) Nucleolysin TIA-1 (RNA-binding protein TIA-1) 46 4e-05
175NUCL_RAT (P13383) Nucleolin (Protein C23) 46 4e-05
176ROC2_ARATH (Q43349) 29 kDa ribonucleoprotein, chloroplast precur... 46 5e-05
177RBM8A_MOUSE (Q9CWZ3) RNA-binding protein 8A (RNA-binding motif p... 46 5e-05
178RBM8A_HUMAN (Q9Y5S9) RNA-binding protein 8A (RNA-binding motif p... 46 5e-05
179NUCL_MOUSE (P09405) Nucleolin (Protein C23) 46 5e-05
180U2AF2_CAEEL (P90978) Splicing factor U2AF 65 kDa subunit (U2 aux... 46 5e-05
181RBM19_HUMAN (Q9Y4C8) Probable RNA-binding protein 19 (RNA-bindin... 45 7e-05
182DND1_HUMAN (Q8IYX4) Dead end protein homolog 1 (RNA-binding moti... 45 7e-05
183COVA1_HUMAN (Q16206) Tumor-associated hydroquinone oxidase (tNOX... 45 7e-05
184CIRBP_XENLA (O93235) Cold-inducible RNA-binding protein (Glycine... 45 7e-05
185SXL_DROSU (Q24668) Protein sex-lethal 45 7e-05
186TIA1_HUMAN (P31483) Nucleolysin TIA-1 isoform p40 (RNA-binding p... 45 7e-05
187NAM8_YEAST (Q00539) Protein NAM8 45 7e-05
188HRB1_YEAST (P38922) Protein HRB1 (Protein TOM34) 45 7e-05
189COVA1_MOUSE (Q8R0Z2) Tumor-associated hydroquinone oxidase (tNOX... 45 7e-05
190TIAR_HUMAN (Q01085) Nucleolysin TIAR (TIA-1-related protein) 45 9e-05
191YDB2_SCHPO (Q10355) Hypothetical RNA-binding protein C22E12.02 i... 45 9e-05
192RBM28_HUMAN (Q9NW13) RNA-binding protein 28 (RNA-binding motif p... 45 9e-05
193SXL_DROME (P19339) Protein sex-lethal 45 9e-05
194TIAR_MOUSE (P70318) Nucleolysin TIAR (TIA-1-related protein) 45 9e-05
195SART3_PONPY (Q5REG1) Squamous cell carcinoma antigen recognized ... 45 9e-05
196RBM19_MOUSE (Q8R3C6) Probable RNA-binding protein 19 (RNA-bindin... 45 9e-05
197DAZL_BRARE (Q9YGW7) Deleted in azoospermia-like (DAZ-like protei... 45 1e-04
198ROA3_HUMAN (P51991) Heterogeneous nuclear ribonucleoprotein A3 (... 45 1e-04
199ROA3_RAT (Q6URK4) Heterogeneous nuclear ribonucleoprotein A3 (hn... 45 1e-04
200ROA3_MOUSE (Q8BG05) Heterogeneous nuclear ribonucleoprotein A3 (... 45 1e-04
201DND1_MOUSE (Q6VY05) Dead end protein homolog 1 (RNA-binding moti... 44 2e-04
202RBM14_PONPY (Q5RC41) RNA-binding protein 14 (RNA-binding motif p... 44 2e-04
203RBM14_MOUSE (Q8C2Q3) RNA-binding protein 14 (RNA-binding motif p... 44 2e-04
204RBM14_HUMAN (Q96PK6) RNA-binding protein 14 (RNA-binding motif p... 44 2e-04
205RBM14_BOVIN (Q5EA36) RNA-binding protein 14 (RNA-binding motif p... 44 2e-04
206RSP4_CAEEL (Q09511) Probable splicing factor, arginine/serine-ri... 44 2e-04
207MRD1_ASHGO (Q75A83) Multiple RNA-binding domain-containing prote... 44 2e-04
208ROA1_SCHAM (P21522) Heterogeneous nuclear ribonucleoprotein A1, ... 44 2e-04
209TRA2_DROVI (O02008) Transformer-2 sex-determining protein 44 2e-04
210NOP4_YEAST (P37838) Nucleolar protein NOP4 (Nucleolar protein NO... 44 2e-04
211ROA1_XENLA (P17130) Heterogeneous nuclear ribonucleoproteins A1 ... 44 2e-04
212SART3_HUMAN (Q15020) Squamous cell carcinoma antigen recognized ... 44 2e-04
213YDC1_SCHPO (Q10422) Hypothetical RNA-binding protein C25G10.01 i... 44 2e-04
214A2BP1_HUMAN (Q9NWB1) Ataxin-2-binding protein 1 44 2e-04
215RBM9_HUMAN (O43251) RNA-binding protein 9 (RNA-binding motif pro... 44 3e-04
216SRR55_DROME (P26686) Serine-arginine protein 55 (SRP55) (Protein... 44 3e-04
217A2BP1_MOUSE (Q9JJ43) Ataxin-2-binding protein 1 44 3e-04
218RO32_XENLA (P51992) Heterogeneous nuclear ribonucleoprotein A3 h... 44 3e-04
219RBM4_RABIT (Q9BDY9) RNA-binding protein 4 (RNA-binding motif pro... 44 3e-04
220RBM4B_HUMAN (Q9BQ04) RNA-binding protein 4B (RNA-binding motif p... 44 3e-04
221RBM4_MOUSE (Q8C7Q4) RNA-binding protein 4 (RNA-binding motif pro... 44 3e-04
222RBM28_MOUSE (Q8CGC6) RNA-binding protein 28 (RNA-binding motif p... 44 3e-04
223RBM4B_RAT (Q64LC9) RNA-binding protein 4B (RNA-binding motif pro... 44 3e-04
224RBM4B_MOUSE (Q8VE92) RNA-binding protein 4B (RNA-binding motif p... 44 3e-04
225MRD1_YARLI (Q6CEW9) Multiple RNA-binding domain-containing prote... 43 4e-04
226ROA1_DROME (P07909) Heterogeneous nuclear ribonucleoprotein A1 (... 43 4e-04
227YNR5_YEAST (P53883) Hypothetical 45.7 kDa protein in RPS3-PSD1 i... 43 4e-04
228MK67I_BRARE (Q8JIY8) MKI67 FHA domain-interacting nucleolar phos... 43 4e-04
229RBM4_HUMAN (Q9BWF3) RNA-binding protein 4 (RNA-binding motif pro... 43 4e-04
230RO22_XENLA (P51990) Heterogeneous nuclear ribonucleoprotein A2 h... 43 4e-04
231RBM4_BOVIN (Q3MHX3) RNA-binding protein 4 (RNA-binding motif pro... 43 4e-04
232ROA2_MOUSE (O88569) Heterogeneous nuclear ribonucleoproteins A2/... 43 5e-04
233RB97D_DROME (Q02926) Ribonucleoprotein RB97D 43 5e-04
234GRP1_SORBI (Q99069) Glycine-rich RNA-binding protein 1 (Fragment) 43 5e-04
235RSP6_CAEEL (Q18409) Probable splicing factor, arginine/serine-ri... 43 5e-04
236ROA2_HUMAN (P22626) Heterogeneous nuclear ribonucleoproteins A2/... 43 5e-04
237YG5B_YEAST (P53316) Hypothetical 89.5 kDa protein in MGA1-GCN4 i... 42 6e-04
238ROA1_BOVIN (P09867) Heterogeneous nuclear ribonucleoprotein A1 (... 42 6e-04
239ROC3_NICSY (P19682) 28 kDa ribonucleoprotein, chloroplast precur... 42 6e-04
240G3BP_HUMAN (Q13283) Ras-GTPase-activating protein-binding protei... 42 6e-04
241ROA1_RAT (P04256) Heterogeneous nuclear ribonucleoprotein A1 (He... 42 6e-04
242ROA1_MOUSE (P49312) Heterogeneous nuclear ribonucleoprotein A1 (... 42 6e-04
243ROA1_HUMAN (P09651) Heterogeneous nuclear ribonucleoprotein A1 (... 42 6e-04
244PPIE_DROME (Q9V3G3) Peptidyl-prolyl cis-trans isomerase E (EC 5.... 42 6e-04
245U2AF2_MOUSE (P26369) Splicing factor U2AF 65 kDa subunit (U2 aux... 42 8e-04
246U2AF2_HUMAN (P26368) Splicing factor U2AF 65 kDa subunit (U2 aux... 42 8e-04
247SART3_MOUSE (Q9JLI8) Squamous cell carcinoma antigen recognized ... 42 8e-04
248NOP12_YARLI (Q6C2Q7) Nucleolar protein 12 42 8e-04
249RRP2_SPIOL (P82277) Plastid-specific 30S ribosomal protein 2, ch... 42 8e-04
250RO21_XENLA (P51989) Heterogeneous nuclear ribonucleoprotein A2 h... 42 0.001
251MSI2H_MOUSE (Q920Q6) RNA-binding protein Musashi homolog 2 (Musa... 42 0.001
252DAZ3_HUMAN (Q9NR90) Deleted in azoospermia protein 3 42 0.001
253DAZ1_HUMAN (Q9NQZ3) Deleted in azoospermia protein 1 42 0.001
254DAZ2_HUMAN (Q13117) Deleted in azoospermia protein 2 42 0.001
255MSI2H_HUMAN (Q96DH6) RNA-binding protein Musashi homolog 2 (Musa... 42 0.001
256G3B2_MOUSE (P97379) Ras-GTPase-activating protein-binding protei... 42 0.001
257G3B2_HUMAN (Q9UN86) Ras-GTPase-activating protein-binding protei... 42 0.001
258MK67I_XENTR (Q6GL69) MKI67 FHA domain-interacting nucleolar phos... 42 0.001
259DAZ4_HUMAN (Q86SG3) Deleted in azoospermia protein 4 42 0.001
260RO31_XENLA (P51968) Heterogeneous nuclear ribonucleoprotein A3 h... 42 0.001
261ROA1_MACMU (Q28521) Heterogeneous nuclear ribonucleoprotein A1 (... 42 0.001
262RSD1_SCHPO (O13845) RNA-binding protein rsd1 42 0.001
263G3BP_MOUSE (P97855) Ras-GTPase-activating protein-binding protei... 41 0.001
264SET1_SCHPO (Q9Y7R4) Histone-lysine N-methyltransferase, H3 lysin... 41 0.001
265MRD1_EMENI (Q5BGA9) Multiple RNA-binding domain-containing prote... 41 0.002
266U2AF2_DROME (Q24562) Splicing factor U2AF 50 kDa subunit (U2 aux... 41 0.002
267DND1_BRARE (Q7T1H5) Dead end protein 1 41 0.002
268RSP3_CAEEL (Q9NEW6) Probable splicing factor, arginine/serine-ri... 41 0.002
269RSP1_CAEEL (Q23121) Probable splicing factor, arginine/serine-ri... 40 0.002
270YHC4_YEAST (P38741) Hypothetical 80.1 kDa protein in SNF6-SPO11 ... 40 0.003
271RBMS1_HUMAN (P29558) RNA-binding motif, single-stranded-interact... 40 0.003
272RBM25_HUMAN (P49756) Probable RNA-binding protein 25 (RNA-bindin... 40 0.003
273MSI1H_RAT (Q8K3P4) RNA-binding protein Musashi homolog 1 (Musash... 40 0.003
274MSI1H_MOUSE (Q61474) RNA-binding protein Musashi homolog 1 (Musa... 40 0.003
275MSI1H_HUMAN (O43347) RNA-binding protein Musashi homolog 1 (Musa... 40 0.003
276NGR1_YEAST (P32831) Negative growth regulatory protein NGR1 (RNA... 40 0.004
277NOP12_ASHGO (Q75BJ7) Nucleolar protein 12 40 0.004
278SFRS2_CHICK (P30352) Splicing factor, arginine/serine-rich 2 (Sp... 40 0.004
279SFRS2_RAT (Q6PDU1) Splicing factor, arginine/serine-rich 2 (Spli... 40 0.004
280SFRS2_PANTR (Q5R1W5) Splicing factor, arginine/serine-rich 2 (Sp... 40 0.004
281SFRS2_MOUSE (Q62093) Splicing factor, arginine/serine-rich 2 (Sp... 40 0.004
282SFRS2_HUMAN (Q01130) Splicing factor, arginine/serine-rich 2 (Sp... 40 0.004
283NCBP2_MOUSE (Q9CQ49) Nuclear cap-binding protein subunit 2 (20 k... 40 0.004
284NCBP2_HUMAN (P52298) Nuclear cap-binding protein subunit 2 (20 k... 40 0.004
285NCBP2_BOVIN (Q3ZBJ1) Nuclear cap-binding protein subunit 2 40 0.004
286RBMS1_MOUSE (Q91W59) RNA-binding motif, single-stranded-interact... 40 0.004
287RU17_YEAST (Q00916) U1 small nuclear ribonucleoprotein 70 kDa ho... 39 0.005
288IF34_SCHPO (P78795) Probable eukaryotic translation initiation f... 39 0.005
289RSP2_CAEEL (Q23120) Probable splicing factor, arginine/serine-ri... 39 0.005
290RBMS2_MOUSE (Q8VC70) RNA-binding motif, single-stranded-interact... 39 0.007
291RBMS2_HUMAN (Q15434) RNA-binding motif, single-stranded-interact... 39 0.007
292PPIE_MOUSE (Q9QZH3) Peptidyl-prolyl cis-trans isomerase E (EC 5.... 39 0.007
293PPIE_HUMAN (Q9UNP9) Peptidyl-prolyl cis-trans isomerase E (EC 5.... 39 0.007
294DRBP1_MOUSE (Q8BHN5) Developmentally-regulated RNA-binding prote... 39 0.007
295DRBP1_HUMAN (Q8IUH3) Developmentally-regulated RNA-binding prote... 39 0.007
296DRBP1_RAT (Q8CFD1) Developmentally-regulated RNA-binding protein 1 39 0.009
297PABPX_SCHPO (Q9P6M8) mRNA export factor crp79 (Polyadenylate-bin... 39 0.009
298RBM15_HUMAN (Q96T37) Putative RNA-binding protein 15 (RNA-bindin... 39 0.009
299PRT1_PICAN (P12806) Putative PRT1 protein 39 0.009
300MK67I_XENLA (Q7SYS2) MKI67 FHA domain-interacting nucleolar phos... 38 0.011
301IF34_MOUSE (Q9Z1D1) Eukaryotic translation initiation factor 3 s... 38 0.011
302IF34_HUMAN (O75821) Eukaryotic translation initiation factor 3 s... 38 0.011
303HNRPC_RAT (P17132) Heterogeneous nuclear ribonucleoprotein C (hn... 38 0.011
304NONA_DROME (Q04047) Protein no-on-transient A (Puff-specific pro... 38 0.011
305SRP2_SCHPO (P78814) Pre-mRNA-splicing factor srp2 38 0.011
306FOX1_CAEEL (Q10572) Sex determination protein fox-1 (Feminizing ... 38 0.015
307NOP12_CANGA (Q6FUS6) Nucleolar protein 12 38 0.015
308HRP65_CHITE (Q9U1N0) Hrp65 protein (Ct-Hrp65) 38 0.015
309NOP12_KLULA (Q6CKV6) Nucleolar protein 12 38 0.015
310RNP24_SCHPO (Q09100) RNA-binding protein rnp24 38 0.015
311SFRS1_ARATH (O22315) Pre-mRNA-splicing factor SF2 (SR1 protein) 37 0.019
312RNP4F_DROME (Q9W4D2) RNA-binding protein 4F 37 0.019
313MINT_HUMAN (Q96T58) Msx2-interacting protein (SPEN homolog) (SMA... 37 0.019
314PPIL4_NEUCR (Q871A4) Peptidyl-prolyl cis-trans isomerase-like 4 ... 37 0.019
315MINT_MOUSE (Q62504) Msx2-interacting protein (SPEN homolog) (SMA... 37 0.019
316NOP12_YEAST (Q08208) Nucleolar protein 12 37 0.025
317SFRS5_HUMAN (Q13243) Splicing factor, arginine/serine-rich 5 (Pr... 37 0.033
318SFRS5_RAT (Q09167) Splicing factor, arginine/serine-rich 5 (Pre-... 37 0.033
319NONA_DROLR (Q9GRX4) Protein no-on-transient A 37 0.033
320PUF68_DROME (Q8T6B9) Poly U-binding splicing factor half pint (6... 37 0.033
321SFRS5_MOUSE (O35326) Splicing factor, arginine/serine-rich 5 (Pr... 37 0.033
322NOP12_SCHPO (O13741) Nucleolar protein 12 37 0.033
323RU17_ARATH (Q42404) U1 small nuclear ribonucleoprotein 70 kDa (U... 36 0.043
324RBM10_HUMAN (P98175) RNA-binding protein 10 (RNA-binding motif p... 36 0.043
325MSA1_SCHPO (Q10277) Multicopy suppressor of sporulation protein ... 36 0.057
326NCBP2_ASHGO (Q754W7) Nuclear cap-binding protein subunit 2 36 0.057
327SFRS6_HUMAN (Q13247) Splicing factor, arginine/serine-rich 6 (Pr... 35 0.074
328YQO4_CAEEL (Q09295) Putative RNA-binding protein EEED8.4 35 0.097
329PAB2_SCHPO (O14327) Polyadenylate-binding protein 2 (Poly(A)-bin... 35 0.097
330NONA_DROVI (Q9GRW7) Protein no-on-transient A 35 0.097
331SPEN_DROME (Q8SX83) Protein split ends 35 0.13
332PABP2_MOUSE (Q8CCS6) Polyadenylate-binding protein 2 (Poly(A)-bi... 35 0.13
333PABP2_HUMAN (Q86U42) Polyadenylate-binding protein 2 (Poly(A)-bi... 35 0.13
334PABP2_BOVIN (Q28165) Polyadenylate-binding protein 2 (Poly(A)-bi... 35 0.13
335HNRU2_HUMAN (P07029) Heterogeneous nuclear ribonucleoprotein UP2... 35 0.13
336NCBP2_XENLA (P52299) Nuclear cap binding protein subunit 2 (20 k... 35 0.13
337CSX1_SCHPO (O13759) RNA-binding post-transcriptional regulator csx1 35 0.13
338MRD1_SCHPO (O13620) Multiple RNA-binding domain-containing prote... 34 0.22
339YQOC_CAEEL (Q09301) Putative RNA-binding protein EEED8.12 33 0.28
340SFRS4_HUMAN (Q08170) Splicing factor, arginine/serine-rich 4 (Pr... 33 0.28
341SFRS4_MOUSE (Q8VE97) Splicing factor, arginine/serine-rich 4 33 0.28
342RBPA_SYNY3 (Q57014) Putative RNA-binding protein rbpA 33 0.37
343NELFE_HUMAN (P18615) Negative elongation factor E (NELF-E) (RD p... 33 0.37
344UAP2_SCHPO (O43120) Splicing factor U2AF-associated protein 2 33 0.37
345RBM4_BRARE (Q6IQ97) RNA-binding protein 4 (RNA-binding motif pro... 33 0.48
346NELFE_MOUSE (P19426) Negative elongation factor E (NELF-E) (RD p... 33 0.48
347PRP24_YEAST (P49960) U4/U6 snRNA-associated splicing factor PRP2... 32 0.63
348LA_MOUSE (P32067) Lupus La protein homolog (La ribonucleoprotein... 32 0.63
349NCBP2_YEAST (Q08920) Nuclear cap-binding protein subunit 2 32 0.82
350SSB1_YEAST (P10080) Single-stranded nucleic acid-binding protein 32 0.82
351RBM12_MOUSE (Q8R4X3) RNA-binding protein 12 (RNA-binding motif p... 32 1.1
352RAVR1_RAT (Q5XI28) Protein raver-1 32 1.1
353RAVR1_MOUSE (Q9CW46) Protein raver-1 32 1.1
354RALY_MOUSE (Q64012) RNA-binding protein Raly (hnRNP associated w... 32 1.1
355MODU_DROME (P13469) DNA-binding protein modulo 32 1.1
356RAVR1_HUMAN (Q8IY67) Protein raver-1 31 1.4
357LA_RAT (P38656) Lupus La protein homolog (La ribonucleoprotein) ... 31 1.8
358PES4_YEAST (P39684) Protein PES4 (DNA polymerase epsilon suppres... 31 1.8
359RAD9B_RAT (Q499V3) Cell cycle checkpoint control protein RAD9B h... 30 2.4
360RBM12_MACMU (Q8SQ27) RNA-binding protein 12 (RNA-binding motif p... 30 2.4
361RBM12_HUMAN (Q9NTZ6) RNA-binding protein 12 (RNA-binding motif p... 30 2.4
362RSP7_CAEEL (O01159) Probable splicing factor, arginine/serine-ri... 30 2.4
363RALY_HUMAN (Q9UKM9) RNA-binding protein Raly (hnRNP associated w... 30 3.1
364YAG3_SCHPO (Q09868) Hypothetical RNA-binding protein C12G12.03 i... 30 3.1
365ATC5_YEAST (P32660) Probable phospholipid-transporting ATPase DN... 30 4.1
366RNP1_YEAST (P32385) Ribonucleoprotein 1 30 4.1
367DPO3_CLOTE (Q895K2) DNA polymerase III polC-type (EC 2.7.7.7) (P... 30 4.1
368APOH_BOVIN (P17690) Beta-2-glycoprotein 1 precursor (Beta-2-glyc... 29 5.3
369NRD1_SCHPO (Q09702) Negative regulator of differentiation 1 (Mul... 29 5.3
370PRGC1_MOUSE (O70343) Peroxisome proliferator-activated receptor ... 29 5.3
371PDIP3_MOUSE (Q8BG81) Polymerase delta-interacting protein 3 29 5.3
372PDIP3_HUMAN (Q9BY77) Polymerase delta-interacting protein 3 (46 ... 29 5.3
373CWC2_YEAST (Q12046) Pre-mRNA-splicing factor CWC2 (Complexed wit... 29 6.9
374YHRA_SCHPO (Q8WZK0) Probable RNA-binding protein C839.10 29 6.9
375RAVR2_HUMAN (Q9HCJ3) Protein raver-2 29 6.9
376RAVR2_MOUSE (Q7TPD6) Protein raver-2 28 9.1
377ARGJ_DEHSC (Q3ZYG4) Arginine biosynthesis bifunctional protein a... 28 9.1
378LARK_DROME (Q94901) RNA-binding protein lark 28 9.1
379CSN12_CRYNE (Q5KAS8) COP9 signalosome complex subunit 12 28 9.1

>ACF_RAT (Q923K9) APOBEC1 complementation factor (APOBEC1-stimulating|
           protein)
          Length = 594

 Score = 68.6 bits (166), Expect = 8e-12
 Identities = 43/128 (33%), Positives = 68/128 (53%), Gaps = 1/128 (0%)
 Frame = +2

Query: 80  KGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAK 259
           +G E+F+G LPR   E  L  +    G+I ++R+M D NG ++G+ FV F+ ++ A  A 
Sbjct: 54  RGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGNNRGYAFVTFSNKQEAKNAI 113

Query: 260 RQKNGVELQ-GKRLAVDLSLDQDTLFFGNLCKEWSAEEFEELIHKTFKDVISVDLAMAPN 436
           +Q N  E++ G+ L V  S+D   LF G + K    EE    + K  + V  VD+ + P+
Sbjct: 114 KQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGV--VDVIVYPS 171

Query: 437 LDSSTSKR 460
               T  R
Sbjct: 172 AADKTKNR 179



to top

>ACF_MOUSE (Q5YD48) APOBEC1 complementation factor (APOBEC1-stimulating|
           protein)
          Length = 595

 Score = 68.2 bits (165), Expect = 1e-11
 Identities = 43/128 (33%), Positives = 68/128 (53%), Gaps = 1/128 (0%)
 Frame = +2

Query: 80  KGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAK 259
           +G E+F+G LPR   E  L  +    G+I ++R+M D NG ++G+ FV F+ ++ A  A 
Sbjct: 54  RGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRLMMDFNGNNRGYAFVTFSNKQEAKNAI 113

Query: 260 RQKNGVELQ-GKRLAVDLSLDQDTLFFGNLCKEWSAEEFEELIHKTFKDVISVDLAMAPN 436
           +Q N  E++ G+ L V  S+D   LF G + K    EE    + K  + V  VD+ + P+
Sbjct: 114 KQLNNYEIRTGRLLGVCASVDNCRLFRGGIPKTKKREEILSEMKKVTEGV--VDVIVYPS 171

Query: 437 LDSSTSKR 460
               T  R
Sbjct: 172 AADKTKNR 179



to top

>ACF_HUMAN (Q9NQ94) APOBEC1 complementation factor (APOBEC1-stimulating|
           protein)
          Length = 594

 Score = 67.0 bits (162), Expect = 2e-11
 Identities = 43/128 (33%), Positives = 67/128 (52%), Gaps = 1/128 (0%)
 Frame = +2

Query: 80  KGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAK 259
           +G E+F+G LPR   E  L  +    G+I ++R+M D NG ++G+ FV F+ +  A  A 
Sbjct: 54  RGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGNNRGYAFVTFSNKVEAKNAI 113

Query: 260 RQKNGVELQ-GKRLAVDLSLDQDTLFFGNLCKEWSAEEFEELIHKTFKDVISVDLAMAPN 436
           +Q N  E++ G+ L V  S+D   LF G + K    EE    + K  + V  VD+ + P+
Sbjct: 114 KQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGV--VDVIVYPS 171

Query: 437 LDSSTSKR 460
               T  R
Sbjct: 172 AADKTKNR 179



to top

>ACF_PONPY (Q5R9H4) APOBEC1 complementation factor (APOBEC1-stimulating|
           protein)
          Length = 587

 Score = 66.6 bits (161), Expect = 3e-11
 Identities = 43/128 (33%), Positives = 67/128 (52%), Gaps = 1/128 (0%)
 Frame = +2

Query: 80  KGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAK 259
           +G E+F+G LPR   E  L  +    G+I ++R+M D NG ++G+ FV F+ +  A  A 
Sbjct: 54  RGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGNNRGYAFVTFSNKLEAKNAI 113

Query: 260 RQKNGVELQ-GKRLAVDLSLDQDTLFFGNLCKEWSAEEFEELIHKTFKDVISVDLAMAPN 436
           +Q N  E++ G+ L V  S+D   LF G + K    EE    + K  + V  VD+ + P+
Sbjct: 114 KQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGV--VDVIVYPS 171

Query: 437 LDSSTSKR 460
               T  R
Sbjct: 172 AADKTKNR 179



to top

>HNRPQ_MOUSE (Q7TMK9) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)|
           (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic
           RNA-interacting protein) (Glycine-and tyrosine-rich
           RNA-binding protein) (GRY-RBP) (NS1-associated protein
           1) (pp68)
          Length = 623

 Score = 66.2 bits (160), Expect = 4e-11
 Identities = 41/120 (34%), Positives = 64/120 (53%), Gaps = 2/120 (1%)
 Frame = +2

Query: 83  GAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQ-NGVSKGFGFVRFAERECAYIAK 259
           G E+FVG +PR   E  L  +F   G I DLR+M D   G+++G+ FV F  +E A  A 
Sbjct: 161 GTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAV 220

Query: 260 RQKNGVELQ-GKRLAVDLSLDQDTLFFGNLCKEWSAEEFEELIHKTFKDVISVDLAMAPN 436
           +  N  E++ GK + V +S+  + LF G++ K  + E+  E   K  + +  V L   P+
Sbjct: 221 KLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPD 280



 Score = 38.5 bits (88), Expect = 0.009
 Identities = 21/71 (29%), Positives = 38/71 (53%)
 Frame = +2

Query: 92  VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKRQKN 271
           +FV  L  + TE  L + FS  G++  ++ +KD       + F+ F ER+ A  A  + N
Sbjct: 340 LFVRNLANTVTEEILEKSFSQFGKLERVKKLKD-------YAFIHFDERDGAVKAMEEMN 392

Query: 272 GVELQGKRLAV 304
           G +L+G+ + +
Sbjct: 393 GKDLEGENIEI 403



 Score = 30.0 bits (66), Expect = 3.1
 Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
 Frame = +2

Query: 77  VKGAEVFVGGLPRSATEGTLREIFSTCGE---IVDLRIMKDQNGVSKGFGFVRFAERECA 247
           V    +FVG +P+S T+  + E FS   E    V L    D    ++GF F+ + + + A
Sbjct: 240 VANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTA 299

Query: 248 YIAKRQ 265
             A+R+
Sbjct: 300 AQARRR 305



to top

>HNRPQ_HUMAN (O60506) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)|
           (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic
           RNA-interacting protein) (Glycine-and tyrosine-rich
           RNA-binding protein) (GRY-RBP) (NS1-associated protein
           1)
          Length = 623

 Score = 66.2 bits (160), Expect = 4e-11
 Identities = 41/120 (34%), Positives = 64/120 (53%), Gaps = 2/120 (1%)
 Frame = +2

Query: 83  GAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQ-NGVSKGFGFVRFAERECAYIAK 259
           G E+FVG +PR   E  L  +F   G I DLR+M D   G+++G+ FV F  +E A  A 
Sbjct: 161 GTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAV 220

Query: 260 RQKNGVELQ-GKRLAVDLSLDQDTLFFGNLCKEWSAEEFEELIHKTFKDVISVDLAMAPN 436
           +  N  E++ GK + V +S+  + LF G++ K  + E+  E   K  + +  V L   P+
Sbjct: 221 KLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPD 280



 Score = 38.9 bits (89), Expect = 0.007
 Identities = 21/71 (29%), Positives = 38/71 (53%)
 Frame = +2

Query: 92  VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKRQKN 271
           +FV  L  + TE  L + FS  G++  ++ +KD       + F+ F ER+ A  A  + N
Sbjct: 340 LFVRNLANTVTEEILEKAFSQFGKLERVKKLKD-------YAFIHFDERDGAVKAMEEMN 392

Query: 272 GVELQGKRLAV 304
           G +L+G+ + +
Sbjct: 393 GKDLEGENIEI 403



 Score = 30.0 bits (66), Expect = 3.1
 Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
 Frame = +2

Query: 77  VKGAEVFVGGLPRSATEGTLREIFSTCGE---IVDLRIMKDQNGVSKGFGFVRFAERECA 247
           V    +FVG +P+S T+  + E FS   E    V L    D    ++GF F+ + + + A
Sbjct: 240 VANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTA 299

Query: 248 YIAKRQ 265
             A+R+
Sbjct: 300 AQARRR 305



to top

>HNRPQ_RAT (Q7TP47) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)|
           (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic
           RNA-interacting protein) (Liver regeneration-related
           protein LRRG077)
          Length = 533

 Score = 66.2 bits (160), Expect = 4e-11
 Identities = 41/120 (34%), Positives = 64/120 (53%), Gaps = 2/120 (1%)
 Frame = +2

Query: 83  GAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQ-NGVSKGFGFVRFAERECAYIAK 259
           G E+FVG +PR   E  L  +F   G I DLR+M D   G+++G+ FV F  +E A  A 
Sbjct: 71  GTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAV 130

Query: 260 RQKNGVELQ-GKRLAVDLSLDQDTLFFGNLCKEWSAEEFEELIHKTFKDVISVDLAMAPN 436
           +  N  E++ GK + V +S+  + LF G++ K  + E+  E   K  + +  V L   P+
Sbjct: 131 KLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPD 190



 Score = 38.5 bits (88), Expect = 0.009
 Identities = 21/71 (29%), Positives = 38/71 (53%)
 Frame = +2

Query: 92  VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKRQKN 271
           +FV  L  + TE  L + FS  G++  ++ +KD       + F+ F ER+ A  A  + N
Sbjct: 250 LFVRNLANTVTEEILEKSFSQFGKLERVKKLKD-------YAFIHFDERDGAVKAMEEMN 302

Query: 272 GVELQGKRLAV 304
           G +L+G+ + +
Sbjct: 303 GKDLEGENIEI 313



 Score = 30.0 bits (66), Expect = 3.1
 Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
 Frame = +2

Query: 77  VKGAEVFVGGLPRSATEGTLREIFSTCGE---IVDLRIMKDQNGVSKGFGFVRFAERECA 247
           V    +FVG +P+S T+  + E FS   E    V L    D    ++GF F+ + + + A
Sbjct: 150 VANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTA 209

Query: 248 YIAKRQ 265
             A+R+
Sbjct: 210 AQARRR 215



to top

>HNRPR_HUMAN (O43390) Heterogeneous nuclear ribonucleoprotein R (hnRNP R)|
          Length = 633

 Score = 65.1 bits (157), Expect = 9e-11
 Identities = 41/120 (34%), Positives = 64/120 (53%), Gaps = 2/120 (1%)
 Frame = +2

Query: 83  GAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQ-NGVSKGFGFVRFAERECAYIAK 259
           G EVFVG +PR   E  L  +F   G I DLR+M D  +G ++G+ F+ F  +E A  A 
Sbjct: 164 GTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAV 223

Query: 260 RQKNGVELQ-GKRLAVDLSLDQDTLFFGNLCKEWSAEEFEELIHKTFKDVISVDLAMAPN 436
           +  +  E++ GK L V +S+  + LF G++ K  + E   E   K  + ++ V L   P+
Sbjct: 224 KLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPD 283



to top

>CSTFT_MOUSE (Q8C7E9) Cleavage stimulation factor, 64 kDa subunit, tau variant|
           (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit,
           tau variant) (TauCstF-64)
          Length = 632

 Score = 62.8 bits (151), Expect = 4e-10
 Identities = 32/73 (43%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
 Frame = +2

Query: 92  VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKD-QNGVSKGFGFVRFAERECAYIAKRQK 268
           VFVG +P  ATE  L++IFS  G +V  R++ D + G  KG+GF  + ++E A  A R  
Sbjct: 18  VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77

Query: 269 NGVELQGKRLAVD 307
           NG E  G+ L VD
Sbjct: 78  NGREFSGRALRVD 90



to top

>CSTFT_HUMAN (Q9H0L4) Cleavage stimulation factor, 64 kDa subunit, tau variant|
           (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit,
           tau variant) (TauCstF-64)
          Length = 616

 Score = 62.8 bits (151), Expect = 4e-10
 Identities = 32/73 (43%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
 Frame = +2

Query: 92  VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKD-QNGVSKGFGFVRFAERECAYIAKRQK 268
           VFVG +P  ATE  L++IFS  G +V  R++ D + G  KG+GF  + ++E A  A R  
Sbjct: 18  VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77

Query: 269 NGVELQGKRLAVD 307
           NG E  G+ L VD
Sbjct: 78  NGREFSGRALRVD 90



to top

>CSTF2_PONPY (Q5RDA3) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa|
           subunit) (CF-1 64 kDa subunit) (CstF-64)
          Length = 577

 Score = 62.4 bits (150), Expect = 6e-10
 Identities = 32/73 (43%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
 Frame = +2

Query: 92  VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKD-QNGVSKGFGFVRFAERECAYIAKRQK 268
           VFVG +P  ATE  L++IFS  G +V  R++ D + G  KG+GF  + ++E A  A R  
Sbjct: 18  VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77

Query: 269 NGVELQGKRLAVD 307
           NG E  G+ L VD
Sbjct: 78  NGREFSGRALRVD 90



to top

>CSTF2_HUMAN (P33240) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa|
           subunit) (CF-1 64 kDa subunit) (CstF-64)
          Length = 577

 Score = 62.4 bits (150), Expect = 6e-10
 Identities = 32/73 (43%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
 Frame = +2

Query: 92  VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKD-QNGVSKGFGFVRFAERECAYIAKRQK 268
           VFVG +P  ATE  L++IFS  G +V  R++ D + G  KG+GF  + ++E A  A R  
Sbjct: 18  VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77

Query: 269 NGVELQGKRLAVD 307
           NG E  G+ L VD
Sbjct: 78  NGREFSGRALRVD 90



to top

>CSTF2_BOVIN (Q8HXM1) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa|
           subunit) (CF-1 64 kDa subunit) (CstF-64)
          Length = 572

 Score = 62.4 bits (150), Expect = 6e-10
 Identities = 32/73 (43%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
 Frame = +2

Query: 92  VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKD-QNGVSKGFGFVRFAERECAYIAKRQK 268
           VFVG +P  ATE  L++IFS  G +V  R++ D + G  KG+GF  + ++E A  A R  
Sbjct: 18  VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77

Query: 269 NGVELQGKRLAVD 307
           NG E  G+ L VD
Sbjct: 78  NGREFSGRALRVD 90



to top

>CSTF2_MOUSE (Q8BIQ5) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa|
           subunit) (CF-1 64 kDa subunit) (CstF-64)
          Length = 580

 Score = 62.4 bits (150), Expect = 6e-10
 Identities = 32/73 (43%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
 Frame = +2

Query: 92  VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKD-QNGVSKGFGFVRFAERECAYIAKRQK 268
           VFVG +P  ATE  L++IFS  G +V  R++ D + G  KG+GF  + ++E A  A R  
Sbjct: 18  VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77

Query: 269 NGVELQGKRLAVD 307
           NG E  G+ L VD
Sbjct: 78  NGREFSGRALRVD 90



to top

>PABP5_ARATH (Q05196) Polyadenylate-binding protein 5 (Poly(A)-binding protein|
           5) (PABP 5)
          Length = 668

 Score = 61.6 bits (148), Expect = 1e-09
 Identities = 42/130 (32%), Positives = 64/130 (49%), Gaps = 5/130 (3%)
 Frame = +2

Query: 92  VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKRQKN 271
           V+V  LP+  T+  L++ F   G+I    +MKDQ+G S+ FGFV F   E A +A  + N
Sbjct: 227 VYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVEKMN 286

Query: 272 GVELQGKRLAVDLSLDQDTLFFGNLCKEWSAEE-----FEELIHKTFKDVISVDLAMAPN 436
           G+           SL +D L+ G   K+   EE     FE+     F+ +   +L +  N
Sbjct: 287 GI-----------SLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYL-KN 334

Query: 437 LDSSTSKRRL 466
           LD S +  +L
Sbjct: 335 LDDSVNDEKL 344



 Score = 55.1 bits (131), Expect = 9e-08
 Identities = 33/113 (29%), Positives = 58/113 (51%), Gaps = 12/113 (10%)
 Frame = +2

Query: 11  GEEPKMDRRAASHGDYDEQDRR------------VKGAEVFVGGLPRSATEGTLREIFST 154
           GE+     RA    D +E+ RR            ++G+ +++  L  S  +  L+E+FS 
Sbjct: 291 GEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDEKLKEMFSE 350

Query: 155 CGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKRQKNGVELQGKRLAVDLS 313
            G +   ++M +  G+S+GFGFV ++  E A +A ++ NG  +  K L V L+
Sbjct: 351 YGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYVALA 403



 Score = 47.8 bits (112), Expect = 1e-05
 Identities = 29/82 (35%), Positives = 41/82 (50%)
 Frame = +2

Query: 59  DEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAER 238
           D   R      VF+  L  S     L E FS+ G I+  ++  D  G SKG+GFV+F + 
Sbjct: 123 DPSTRLSGKGNVFIKNLDASIDNKALYETFSSFGTILSCKVAMDVVGRSKGYGFVQFEKE 182

Query: 239 ECAYIAKRQKNGVELQGKRLAV 304
           E A  A  + NG+ L  K++ V
Sbjct: 183 ETAQAAIDKLNGMLLNDKQVFV 204



 Score = 38.9 bits (89), Expect = 0.007
 Identities = 31/121 (25%), Positives = 55/121 (45%), Gaps = 7/121 (5%)
 Frame = +2

Query: 86  AEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKRQ 265
           + ++VG L  S  E  L ++F+    + +LR+ +D    S G+ +V FA  E A  A   
Sbjct: 45  SSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDLTHRSLGYAYVNFANPEDASRAMES 104

Query: 266 KNGVELQGKRLAVDLS-LDQDTLFFGN---LCKEWSAEEFEELIHKTFKD---VISVDLA 424
            N   ++ + + + LS  D  T   G      K   A    + +++TF     ++S  +A
Sbjct: 105 LNYAPIRDRPIRIMLSNRDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFGTILSCKVA 164

Query: 425 M 427
           M
Sbjct: 165 M 165



to top

>TADBP_MOUSE (Q921F2) TAR DNA-binding protein 43 (TDP-43)|
          Length = 414

 Score = 58.9 bits (141), Expect = 6e-09
 Identities = 36/108 (33%), Positives = 59/108 (54%), Gaps = 8/108 (7%)
 Frame = +2

Query: 80  KGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKD-QNGVSKGFGFVRFAERECAYIA 256
           K +++ V GLP   TE  L++ FST GE++ +++ KD + G SKGFGFVRF E E     
Sbjct: 102 KTSDLIVLGLPWKTTEQDLKDYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKV 161

Query: 257 KRQKNGVE-------LQGKRLAVDLSLDQDTLFFGNLCKEWSAEEFEE 379
             Q++ ++       L   + + D  L    +F G   ++ +AEE ++
Sbjct: 162 MSQRHMIDGRWCDCKLPNSKQSPDEPLRSRKVFVGRCTEDMTAEELQQ 209



 Score = 33.1 bits (74), Expect = 0.37
 Identities = 20/60 (33%), Positives = 30/60 (50%)
 Frame = +2

Query: 68  DRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECA 247
           D  ++  +VFVG      T   L++ F   GE+VD+ I K      + F FV FA+ + A
Sbjct: 185 DEPLRSRKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP----FRAFAFVTFADDKVA 240



to top

>TADBP_HUMAN (Q13148) TAR DNA-binding protein 43 (TDP-43)|
          Length = 414

 Score = 58.9 bits (141), Expect = 6e-09
 Identities = 39/120 (32%), Positives = 63/120 (52%), Gaps = 8/120 (6%)
 Frame = +2

Query: 80  KGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKD-QNGVSKGFGFVRFAERECAYIA 256
           K +++ V GLP   TE  L+E FST GE++ +++ KD + G SKGFGFVRF E E     
Sbjct: 102 KTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKV 161

Query: 257 KRQKNGVE-------LQGKRLAVDLSLDQDTLFFGNLCKEWSAEEFEELIHKTFKDVISV 415
             Q++ ++       L   + + D  L    +F G   ++ + +E  E   + + DV+ V
Sbjct: 162 MSQRHMIDGRWCDCKLPNSKQSQDEPLRSRKVFVGRCTEDMTEDELREFFSQ-YGDVMDV 220



 Score = 40.4 bits (93), Expect = 0.002
 Identities = 23/61 (37%), Positives = 33/61 (54%)
 Frame = +2

Query: 65  QDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAEREC 244
           QD  ++  +VFVG      TE  LRE FS  G+++D+ I K      + F FV FA+ + 
Sbjct: 184 QDEPLRSRKVFVGRCTEDMTEDELREFFSQYGDVMDVFIPKP----FRAFAFVTFADDQI 239

Query: 245 A 247
           A
Sbjct: 240 A 240



to top

>RBM23_HUMAN (Q86U06) Probable RNA-binding protein 23 (RNA-binding motif protein|
           23) (RNA-binding region-containing protein 4) (Splicing
           factor SF2)
          Length = 439

 Score = 58.9 bits (141), Expect = 6e-09
 Identities = 32/72 (44%), Positives = 46/72 (63%), Gaps = 1/72 (1%)
 Frame = +2

Query: 92  VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQN-GVSKGFGFVRFAERECAYIAKRQK 268
           ++VG L  + TE  LR IF   G+I ++ +MKD + G SKG+GF+ F++ ECA  A  Q 
Sbjct: 265 LYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQL 324

Query: 269 NGVELQGKRLAV 304
           NG EL G+ + V
Sbjct: 325 NGFELAGRPMRV 336



 Score = 33.9 bits (76), Expect = 0.22
 Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
 Frame = +2

Query: 59  DEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNG-VSKGFGFVRFAE 235
           +E+D R     VF   L        L + FS  G++ D+RI+ D+N   SKG  +V F E
Sbjct: 161 EERDART----VFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCE 216

Query: 236 RECAYIAKRQKNGVELQGKRL 298
            +   +A      + L G+RL
Sbjct: 217 IQSVPLA------IGLTGQRL 231



to top

>RBMX2_MOUSE (Q8R0F5) RNA-binding motif protein, X-linked 2|
          Length = 326

 Score = 58.9 bits (141), Expect = 6e-09
 Identities = 29/75 (38%), Positives = 49/75 (65%), Gaps = 1/75 (1%)
 Frame = +2

Query: 86  AEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKD-QNGVSKGFGFVRFAERECAYIAKR 262
           A +FVGGLP   TEG +  +FS  GEIV++ +++D + G SKGF F+ + ++    +A  
Sbjct: 36  AWIFVGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAVD 95

Query: 263 QKNGVELQGKRLAVD 307
             NG++++G+ + VD
Sbjct: 96  NFNGIKIKGRTIRVD 110



to top

>SXL_CHRRU (O97018) Sex-lethal homolog|
          Length = 307

 Score = 58.5 bits (140), Expect = 8e-09
 Identities = 43/132 (32%), Positives = 63/132 (47%), Gaps = 8/132 (6%)
 Frame = +2

Query: 20  PKMDRRAASHGDYDEQDRR-VKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKD-Q 193
           P +   + + G  D  D +   G  + V  LP+  T+  L  +F TCG I   RIMKD +
Sbjct: 62  PAISTNSVNSGGGDCGDNQGCNGTNLIVNYLPQDMTDRELYALFRTCGPINTCRIMKDYK 121

Query: 194 NGVSKGFGFVRFAERECAYIAKRQKNGVELQGKRLAVDL------SLDQDTLFFGNLCKE 355
            G S G+ FV FA    A  A +  NGV ++ KRL V        S+    L+  NL + 
Sbjct: 122 TGYSFGYAFVDFASEIDAQNAIKSLNGVTVRNKRLKVSYARPGGESIKDTNLYVTNLPRT 181

Query: 356 WSAEEFEELIHK 391
            + +E E++  K
Sbjct: 182 ITDDELEKIFGK 193



to top

>RBMX2_HUMAN (Q9Y388) RNA-binding motif protein, X-linked 2|
          Length = 322

 Score = 58.2 bits (139), Expect = 1e-08
 Identities = 30/88 (34%), Positives = 53/88 (60%), Gaps = 1/88 (1%)
 Frame = +2

Query: 47  HGDYDEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKD-QNGVSKGFGFV 223
           H +Y +       A +F+GGLP   TEG +  +FS  GEIV++ +++D + G SKGF F+
Sbjct: 29  HSEYKDS------AWIFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFL 82

Query: 224 RFAERECAYIAKRQKNGVELQGKRLAVD 307
            + ++    +A    NG++++G+ + VD
Sbjct: 83  CYEDQRSTILAVDNFNGIKIKGRTIRVD 110



to top

>RNPC2_MOUSE (Q8VH51) RNA-binding region-containing protein 2 (Coactivator of|
           activating protein 1 and estrogen receptors)
           (Coactivator of AP-1 and ERs) (Transcription coactivator
           CAPER)
          Length = 530

 Score = 58.2 bits (139), Expect = 1e-08
 Identities = 31/72 (43%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
 Frame = +2

Query: 92  VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKD-QNGVSKGFGFVRFAERECAYIAKRQK 268
           ++VG L  + TE  LR IF   G I  +++M D + G SKG+GF+ F++ ECA  A  Q 
Sbjct: 252 LYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQL 311

Query: 269 NGVELQGKRLAV 304
           NG EL G+ + V
Sbjct: 312 NGFELAGRPMKV 323



 Score = 32.0 bits (71), Expect = 0.82
 Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = +2

Query: 59  DEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNG-VSKGFGFVRFAE 235
           +E+D R     VF   L        L E FST G++ D+R++ D+N   S+G  +V F +
Sbjct: 148 EERDART----VFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSRGIAYVEFVD 203



to top

>RNPC2_HUMAN (Q14498) RNA-binding region-containing protein 2 (Hepatocellular|
           carcinoma protein 1) (Splicing factor HCC1)
          Length = 530

 Score = 58.2 bits (139), Expect = 1e-08
 Identities = 31/72 (43%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
 Frame = +2

Query: 92  VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKD-QNGVSKGFGFVRFAERECAYIAKRQK 268
           ++VG L  + TE  LR IF   G I  +++M D + G SKG+GF+ F++ ECA  A  Q 
Sbjct: 252 LYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQL 311

Query: 269 NGVELQGKRLAV 304
           NG EL G+ + V
Sbjct: 312 NGFELAGRPMKV 323



 Score = 33.1 bits (74), Expect = 0.37
 Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = +2

Query: 59  DEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNG-VSKGFGFVRFAE 235
           +E+D R     VF   L        L E FST G++ D+R++ D+N   SKG  +V F +
Sbjct: 148 EERDART----VFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVD 203



to top

>PABP_SCHPO (P31209) Polyadenylate-binding protein (Poly(A)-binding protein)|
           (PABP)
          Length = 653

 Score = 58.2 bits (139), Expect = 1e-08
 Identities = 29/71 (40%), Positives = 40/71 (56%)
 Frame = +2

Query: 92  VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKRQKN 271
           V++  L    TE    ++F   GEI  L ++KDQN   +GFGFV +A  ECA  A  + N
Sbjct: 263 VYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDELN 322

Query: 272 GVELQGKRLAV 304
             E +GK+L V
Sbjct: 323 DKEYKGKKLYV 333



 Score = 49.3 bits (116), Expect = 5e-06
 Identities = 37/140 (26%), Positives = 62/140 (44%), Gaps = 14/140 (10%)
 Frame = +2

Query: 59  DEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAER 238
           D   R++    VF+  L  +     L + FS  G+I+  ++  D+ G +KG+GFV F   
Sbjct: 159 DPSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDELGNAKGYGFVHFDSV 218

Query: 239 ECAYIAKRQKNGVELQGKRLAVD--------------LSLDQDTLFFGNLCKEWSAEEFE 376
           E A  A    NG+ L  K++ V               L  +   ++  NL  E + +EF 
Sbjct: 219 ESANAAIEHVNGMLLNDKKVYVGHHVSRRERQSKVEALKANFTNVYIKNLDTEITEQEFS 278

Query: 377 ELIHKTFKDVISVDLAMAPN 436
           +L  + F ++ S+ L    N
Sbjct: 279 DLFGQ-FGEITSLSLVKDQN 297



 Score = 48.5 bits (114), Expect = 8e-06
 Identities = 30/84 (35%), Positives = 42/84 (50%)
 Frame = +2

Query: 62  EQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERE 241
           E+  + +G  +F+  L     +  L+  FS  G I   +IM D+ G SKGFGFV +   E
Sbjct: 356 EKMNKYQGVNLFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQGKSKGFGFVCYTTPE 415

Query: 242 CAYIAKRQKNGVELQGKRLAVDLS 313
            A  A  + N   L GK L V L+
Sbjct: 416 EANKAVTEMNQRMLAGKPLYVALA 439



 Score = 35.8 bits (81), Expect = 0.057
 Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
 Frame = +2

Query: 86  AEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQ-NGVSKGFGFVRFAERECAYIAKR 262
           A ++VG L  S TE  L E+F++ G +  +R+ +D     S G+ +V F   E    A  
Sbjct: 80  ASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALD 139

Query: 263 QKNGVELQGK 292
           + N   ++G+
Sbjct: 140 ELNYTLIKGR 149



to top

>SXL_MUSDO (O17310) Sex-lethal homolog|
          Length = 324

 Score = 58.2 bits (139), Expect = 1e-08
 Identities = 39/112 (34%), Positives = 56/112 (50%), Gaps = 7/112 (6%)
 Frame = +2

Query: 77  VKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKD-QNGVSKGFGFVRFAERECAYI 253
           V G  + V  LP+  T+  L  +F TCG I   RIMKD + G S G+ FV FA    A  
Sbjct: 99  VNGTNLIVNYLPQDMTDRELYALFRTCGPINTCRIMKDYKTGYSFGYAFVDFASEIDAQN 158

Query: 254 AKRQKNGVELQGKRLAVDL------SLDQDTLFFGNLCKEWSAEEFEELIHK 391
           A +  NG+ ++ KRL V        S+    L+  NL +  + +E E++  K
Sbjct: 159 AIKTVNGITVRNKRLKVSYARPGGESIKDTNLYVTNLPRTITDDELEKIFGK 210



to top

>TRA2B_RAT (P62997) Arginine/serine-rich splicing factor 10|
           (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein
           homolog) (RA301)
          Length = 288

 Score = 57.8 bits (138), Expect = 1e-08
 Identities = 34/74 (45%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
 Frame = +2

Query: 98  VGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGV-SKGFGFVRFAERECAYIAKRQKNG 274
           V GL    TE  LRE+FS  G I D+ I+ DQ    S+GF FV F   + A  AK + NG
Sbjct: 122 VFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANG 181

Query: 275 VELQGKRLAVDLSL 316
           +EL G+R+ VD S+
Sbjct: 182 MELDGRRIRVDFSI 195



to top

>TRA2B_MOUSE (P62996) Arginine/serine-rich splicing factor 10|
           (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein
           homolog) (Silica-induced gene 41 protein) (SIG-41)
          Length = 288

 Score = 57.8 bits (138), Expect = 1e-08
 Identities = 34/74 (45%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
 Frame = +2

Query: 98  VGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGV-SKGFGFVRFAERECAYIAKRQKNG 274
           V GL    TE  LRE+FS  G I D+ I+ DQ    S+GF FV F   + A  AK + NG
Sbjct: 122 VFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANG 181

Query: 275 VELQGKRLAVDLSL 316
           +EL G+R+ VD S+
Sbjct: 182 MELDGRRIRVDFSI 195



to top

>TRA2B_HUMAN (P62995) Arginine/serine-rich splicing factor 10|
           (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein
           homolog)
          Length = 288

 Score = 57.8 bits (138), Expect = 1e-08
 Identities = 34/74 (45%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
 Frame = +2

Query: 98  VGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGV-SKGFGFVRFAERECAYIAKRQKNG 274
           V GL    TE  LRE+FS  G I D+ I+ DQ    S+GF FV F   + A  AK + NG
Sbjct: 122 VFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANG 181

Query: 275 VELQGKRLAVDLSL 316
           +EL G+R+ VD S+
Sbjct: 182 MELDGRRIRVDFSI 195



to top

>PABP_YEAST (P04147) Polyadenylate-binding protein, cytoplasmic and nuclear|
           (Poly(A)-binding protein) (PABP) (ARS consensus-binding
           protein ACBP-67) (Polyadenylate tail-binding protein)
          Length = 576

 Score = 57.4 bits (137), Expect = 2e-08
 Identities = 42/135 (31%), Positives = 62/135 (45%), Gaps = 14/135 (10%)
 Frame = +2

Query: 59  DEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAER 238
           D   R+     +F+  L        L + FS  G+I+  +I  D+NG SKGFGFV F E 
Sbjct: 116 DPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEE 175

Query: 239 ECAYIAKRQKNGVELQGKRLAV---------DLSLDQ-----DTLFFGNLCKEWSAEEFE 376
             A  A    NG+ L G+ + V         D  L++       L+  N+  E + E+F+
Sbjct: 176 GAAKEAIDALNGMLLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETTDEQFQ 235

Query: 377 ELIHKTFKDVISVDL 421
           EL  K F  ++S  L
Sbjct: 236 ELFAK-FGPIVSASL 249



 Score = 53.1 bits (126), Expect = 3e-07
 Identities = 32/88 (36%), Positives = 48/88 (54%)
 Frame = +2

Query: 62  EQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERE 241
           E+  + +G  +FV  L  S  +  L E F+  G I   ++M+ +NG SKGFGFV F+  E
Sbjct: 313 EKMAKYQGVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTENGKSKGFGFVCFSTPE 372

Query: 242 CAYIAKRQKNGVELQGKRLAVDLSLDQD 325
            A  A  +KN   + GK L V ++  +D
Sbjct: 373 EATKAITEKNQQIVAGKPLYVAIAQRKD 400



 Score = 47.4 bits (111), Expect = 2e-05
 Identities = 26/84 (30%), Positives = 42/84 (50%)
 Frame = +2

Query: 53  DYDEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFA 232
           D   ++ +     ++V  +    T+   +E+F+  G IV   + KD +G  KGFGFV + 
Sbjct: 207 DSQLEETKAHYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYE 266

Query: 233 ERECAYIAKRQKNGVELQGKRLAV 304
           + E A  A    N  EL G++L V
Sbjct: 267 KHEDAVKAVEALNDSELNGEKLYV 290



 Score = 42.4 bits (98), Expect = 6e-04
 Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
 Frame = +2

Query: 29  DRRAASHGDYDEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQ-NGVS 205
           D++ A+ G  + Q      A ++VG L  S +E  L +IFS  G +  +R+ +D     S
Sbjct: 19  DQKQAATGS-ESQSVENSSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTS 77

Query: 206 KGFGFVRFAERECAYIAKRQKNGVELQGK 292
            G+ +V F + E    A  Q N   ++G+
Sbjct: 78  LGYAYVNFNDHEAGRKAIEQLNYTPIKGR 106



to top

>RBM34_RAT (Q5M9F1) RNA-binding protein 34 (RNA-binding motif protein 34)|
          Length = 428

 Score = 57.4 bits (137), Expect = 2e-08
 Identities = 32/81 (39%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
 Frame = +2

Query: 92  VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQ-NGVSKGFGFVRFAERECAYIAKRQK 268
           VFVG LP    E  L E F  CG IV +RI+++   GV +GFG+V F   +  ++A +  
Sbjct: 287 VFVGNLPYRVDESALEEHFLDCGSIVAVRIVRNPLTGVGRGFGYVLFENTDAVHLALKLN 346

Query: 269 NGVELQGKRLAVDLSLDQDTL 331
           N  EL G++L V  S++++ L
Sbjct: 347 NS-ELMGRKLRVMRSVNKEKL 366



to top

>GRP2_ARATH (Q9SVM8) Glycine-rich RNA-binding protein 2, mitochondrial|
           precursor (AtGRP2)
          Length = 158

 Score = 57.0 bits (136), Expect = 2e-08
 Identities = 28/84 (33%), Positives = 51/84 (60%), Gaps = 1/84 (1%)
 Frame = +2

Query: 74  RVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKD-QNGVSKGFGFVRFAERECAY 250
           R+   ++F+GGL     + +LR+ F+  G++VD +++ D + G S+GFGFV F +   A 
Sbjct: 31  RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAAT 90

Query: 251 IAKRQKNGVELQGKRLAVDLSLDQ 322
            A  + +G EL G+ + V+ + D+
Sbjct: 91  AAISEMDGKELNGRHIRVNPANDR 114



to top

>DND1_XENLA (Q6DCB7) Dead end protein homolog 1|
          Length = 371

 Score = 56.6 bits (135), Expect = 3e-08
 Identities = 33/124 (26%), Positives = 62/124 (50%), Gaps = 1/124 (0%)
 Frame = +2

Query: 77  VKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIA 256
           V G+EVF+G +P+   E  L  +F + G++ + R+M   +G+++GF + R+  R  A  A
Sbjct: 74  VSGSEVFIGKIPQDIYEDKLIPLFQSVGKLYEFRLMMTFSGLNRGFAYARYISRRQAISA 133

Query: 257 KRQKNGVEL-QGKRLAVDLSLDQDTLFFGNLCKEWSAEEFEELIHKTFKDVISVDLAMAP 433
               NG E+ +G  + V  S ++  L    L   +     + ++ +    V S+ L  +P
Sbjct: 134 IMSLNGFEITKGCCIVVCRSTEKSELALDGLPGNFDENMLKNVLDEVTSGVSSISLHPSP 193

Query: 434 NLDS 445
             +S
Sbjct: 194 TKES 197



to top

>MYEF2_MOUSE (Q8C854) Myelin expression factor 2 (MyEF-2) (MEF-2)|
          Length = 591

 Score = 56.6 bits (135), Expect = 3e-08
 Identities = 34/82 (41%), Positives = 48/82 (58%)
 Frame = +2

Query: 80  KGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAK 259
           KG ++FV  LP   T   L+E FS CG ++   I K +NG SKG G VRF   E A  A 
Sbjct: 512 KGNQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEI-KMENGKSKGCGTVRFESAESAEKAC 570

Query: 260 RQKNGVELQGKRLAVDLSLDQD 325
           R  NG+++ G+   +D+ LD++
Sbjct: 571 RIMNGIKISGRE--IDVRLDRN 590



 Score = 35.0 bits (79), Expect = 0.097
 Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
 Frame = +2

Query: 92  VFVGGLPRSATEGTLREIF-STCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKRQK 268
           VF+  +P       ++++     GE+  + + KD  G S+G G V F + E    A    
Sbjct: 93  VFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALETM 152

Query: 269 NGVELQGKRLAV 304
           N  +L G+ L +
Sbjct: 153 NKYDLSGRPLNI 164



 Score = 34.7 bits (78), Expect = 0.13
 Identities = 21/64 (32%), Positives = 31/64 (48%)
 Frame = +2

Query: 83  GAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKR 262
           G+ +FV  L        L+E+FS  G +    I +D++G S+G G V F +   A  A  
Sbjct: 223 GSTIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAIS 282

Query: 263 QKNG 274
             NG
Sbjct: 283 MFNG 286



to top

>RBM34_HUMAN (P42696) RNA-binding protein 34 (RNA-binding motif protein 34)|
          Length = 430

 Score = 56.2 bits (134), Expect = 4e-08
 Identities = 29/79 (36%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
 Frame = +2

Query: 92  VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQ-NGVSKGFGFVRFAERECAYIAKRQK 268
           VFVG LP    E  + + F  CG I+ +RI++D+  G+ KGFG+V F   +  ++A +  
Sbjct: 289 VFVGNLPYKVEESAIEKHFLDCGSIMAVRIVRDKMTGIGKGFGYVLFENTDSVHLALKLN 348

Query: 269 NGVELQGKRLAVDLSLDQD 325
           N  EL G++L V  S++++
Sbjct: 349 NS-ELMGRKLRVMRSVNKE 366



 Score = 35.4 bits (80), Expect = 0.074
 Identities = 39/144 (27%), Positives = 57/144 (39%), Gaps = 26/144 (18%)
 Frame = +2

Query: 62  EQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLR--------------------- 178
           E++R      VFVG LP +  +  L+  F   G+I  +R                     
Sbjct: 177 EEERLKNERTVFVGNLPVTCNKKKLKSFFKEYGQIESVRFRSLIPAEGTLSKKLAAIKRK 236

Query: 179 IMKDQNGVSKGFGFVRFAERECAYIAKRQKNGVELQGKRLAVDL-----SLDQDTLFFGN 343
           I  DQ  ++    +V F E   A  A ++       G R+ VDL     S D+ ++F GN
Sbjct: 237 IHPDQKNIN---AYVVFKEESAATQALKRNGAQIADGFRIRVDLASETSSRDKRSVFVGN 293

Query: 344 LCKEWSAEEFEELIHKTFKDVISV 415
           L   +  E  E  I K F D  S+
Sbjct: 294 L--PYKVE--ESAIEKHFLDCGSI 313



to top

>PABP4_HUMAN (Q13310) Polyadenylate-binding protein 4 (Poly(A)-binding protein|
           4) (PABP 4) (Inducible poly(A)-binding protein) (iPABP)
           (Activated-platelet protein 1) (APP-1)
          Length = 644

 Score = 56.2 bits (134), Expect = 4e-08
 Identities = 40/132 (30%), Positives = 65/132 (49%), Gaps = 5/132 (3%)
 Frame = +2

Query: 92  VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKRQKN 271
           V++        + +L+E+FS  G+ + +++M+D NG SKGFGFV + + E A  A  + N
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMN 252

Query: 272 GVELQGKRLAVDLSLDQDTLFFGNLCK--EWSAE---EFEELIHKTFKDVISVDLAMAPN 436
           G E+ GK            +F G   K  E  AE   +FE+L  +       V+L +  N
Sbjct: 253 GKEISGK-----------IIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYI-KN 300

Query: 437 LDSSTSKRRLNR 472
           LD +    +L +
Sbjct: 301 LDDTIDDEKLRK 312



 Score = 45.4 bits (106), Expect = 7e-05
 Identities = 27/82 (32%), Positives = 43/82 (52%)
 Frame = +2

Query: 59  DEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAER 238
           D   R+     VF+  L +S     L + FS  G I+  +++ D+NG SKG+ FV F  +
Sbjct: 90  DPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQ 148

Query: 239 ECAYIAKRQKNGVELQGKRLAV 304
           E A  A  + NG+ L  +++ V
Sbjct: 149 EAADKAIEKMNGMLLNDRKVFV 170



 Score = 44.3 bits (103), Expect = 2e-04
 Identities = 33/103 (32%), Positives = 56/103 (54%), Gaps = 4/103 (3%)
 Frame = +2

Query: 17  EPKMDRRAASHGDYDE--QDR--RVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIM 184
           + K++R+A     +++  Q+R  R +G  +++  L  +  +  LR+ FS  G I   ++M
Sbjct: 267 QKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM 326

Query: 185 KDQNGVSKGFGFVRFAERECAYIAKRQKNGVELQGKRLAVDLS 313
            + +G SKGFGFV F+  E A  A  + NG  +  K L V L+
Sbjct: 327 LE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 368



to top

>RBM34_MOUSE (Q8C5L7) RNA-binding protein 34 (RNA-binding motif protein 34)|
          Length = 375

 Score = 56.2 bits (134), Expect = 4e-08
 Identities = 31/81 (38%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
 Frame = +2

Query: 92  VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQ-NGVSKGFGFVRFAERECAYIAKRQK 268
           VFVG LP    +  L E F  CG IV +RI+++   GV +GFG+V F   +  ++A +  
Sbjct: 293 VFVGNLPYKIEDSALEEHFLDCGSIVAVRIVRNPLTGVGRGFGYVLFENTDAVHLALKLN 352

Query: 269 NGVELQGKRLAVDLSLDQDTL 331
           N  EL G++L V  S++++ L
Sbjct: 353 NS-ELMGRKLRVMRSVNKEKL 372



to top

>NONO_MOUSE (Q99K48) Non-POU domain-containing octamer-binding protein (NonO|
           protein)
          Length = 473

 Score = 55.8 bits (133), Expect = 5e-08
 Identities = 36/98 (36%), Positives = 53/98 (54%)
 Frame = +2

Query: 86  AEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKRQ 265
           + +FVG LP   TE  +R++F   G+  ++ I KD     KGFGF+R   R  A IAK +
Sbjct: 76  SRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD-----KGFGFIRLETRTLAEIAKVE 130

Query: 266 KNGVELQGKRLAVDLSLDQDTLFFGNLCKEWSAEEFEE 379
            + + L+GK+L V  +    +L   NL +  S E  EE
Sbjct: 131 LDNMPLRGKQLRVRFACHSASLTVRNLPQYVSNELLEE 168



to top

>NONO_RAT (Q5FVM4) Non-POU domain-containing octamer-binding protein (NonO|
           protein)
          Length = 476

 Score = 55.8 bits (133), Expect = 5e-08
 Identities = 36/98 (36%), Positives = 53/98 (54%)
 Frame = +2

Query: 86  AEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKRQ 265
           + +FVG LP   TE  +R++F   G+  ++ I KD     KGFGF+R   R  A IAK +
Sbjct: 79  SRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD-----KGFGFIRLETRTLAEIAKVE 133

Query: 266 KNGVELQGKRLAVDLSLDQDTLFFGNLCKEWSAEEFEE 379
            + + L+GK+L V  +    +L   NL +  S E  EE
Sbjct: 134 LDNMPLRGKQLRVRFACHSASLTVRNLPQYVSNELLEE 171



to top

>NONO_PONPY (Q5RFL9) Non-POU domain-containing octamer-binding protein (NonO|
           protein)
          Length = 471

 Score = 55.8 bits (133), Expect = 5e-08
 Identities = 36/98 (36%), Positives = 53/98 (54%)
 Frame = +2

Query: 86  AEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKRQ 265
           + +FVG LP   TE  +R++F   G+  ++ I KD     KGFGF+R   R  A IAK +
Sbjct: 74  SRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD-----KGFGFIRLETRTLAEIAKVE 128

Query: 266 KNGVELQGKRLAVDLSLDQDTLFFGNLCKEWSAEEFEE 379
            + + L+GK+L V  +    +L   NL +  S E  EE
Sbjct: 129 LDNMPLRGKQLRVRFACHSASLTVRNLPQYVSNELLEE 166



to top

>NONO_HUMAN (Q15233) Non-POU domain-containing octamer-binding protein (NonO|
           protein) (54 kDa nuclear RNA- and DNA-binding protein)
           (p54(nrb)) (p54nrb) (55 kDa nuclear protein) (NMT55)
           (DNA-binding p52/p100 complex, 52 kDa subunit)
          Length = 471

 Score = 55.8 bits (133), Expect = 5e-08
 Identities = 36/98 (36%), Positives = 53/98 (54%)
 Frame = +2

Query: 86  AEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKRQ 265
           + +FVG LP   TE  +R++F   G+  ++ I KD     KGFGF+R   R  A IAK +
Sbjct: 74  SRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD-----KGFGFIRLETRTLAEIAKVE 128

Query: 266 KNGVELQGKRLAVDLSLDQDTLFFGNLCKEWSAEEFEE 379
            + + L+GK+L V  +    +L   NL +  S E  EE
Sbjct: 129 LDNMPLRGKQLRVRFACHSASLTVRNLPQYVSNELLEE 166



to top

>HNRPD_MOUSE (Q60668) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)|
           (AU-rich element RNA-binding protein 1)
          Length = 355

 Score = 55.8 bits (133), Expect = 5e-08
 Identities = 50/165 (30%), Positives = 73/165 (44%), Gaps = 13/165 (7%)
 Frame = +2

Query: 8   EGEEPKMDRRAASHGDYDEQDRRVKGA-------EVFVGGLPRSATEGTLREIFSTCGEI 166
           EG +    +     G  +   R  + A       ++F+GGL    T+  L++ FS  GE+
Sbjct: 64  EGAKIDASKNEEDEGHSNSSPRHTEAAAAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEV 123

Query: 167 VDLRIMKDQ-NGVSKGFGFVRFAERECAYIAKRQK----NGVELQGKRL-AVDLSLDQDT 328
           VD  +  D   G S+GFGFV F E E       QK    NG  +  KR  A+        
Sbjct: 124 VDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKK 183

Query: 329 LFFGNLCKEWSAEEFEELIHKTFKDVISVDLAMAPNLDSSTSKRR 463
           +F G L  +   E+  E     F +V S++L M    D+ T+KRR
Sbjct: 184 IFVGGLSPDTPEEKIREYF-GGFGEVESIELPM----DNKTNKRR 223



to top

>MYEF2_HUMAN (Q9P2K5) Myelin expression factor 2 (MyEF-2) (MST156)|
          Length = 600

 Score = 55.8 bits (133), Expect = 5e-08
 Identities = 34/82 (41%), Positives = 48/82 (58%)
 Frame = +2

Query: 80  KGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAK 259
           KG ++FV  LP   T   L+E FS CG ++   I K +NG SKG G VRF   E A  A 
Sbjct: 521 KGNQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEI-KMENGKSKGCGTVRFDSPESAEKAC 579

Query: 260 RQKNGVELQGKRLAVDLSLDQD 325
           R  NG+++ G+   +D+ LD++
Sbjct: 580 RIMNGIKISGRE--IDVRLDRN 599



 Score = 35.0 bits (79), Expect = 0.097
 Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
 Frame = +2

Query: 92  VFVGGLPRSATEGTLREIF-STCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKRQK 268
           VF+  +P       ++++     GE+  + + KD  G S+G G V F + E    A    
Sbjct: 102 VFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALETM 161

Query: 269 NGVELQGKRLAV 304
           N  +L G+ L +
Sbjct: 162 NKYDLSGRPLNI 173



 Score = 34.7 bits (78), Expect = 0.13
 Identities = 21/64 (32%), Positives = 31/64 (48%)
 Frame = +2

Query: 83  GAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKR 262
           G+ +FV  L        L+E+FS  G +    I +D++G S+G G V F +   A  A  
Sbjct: 232 GSTIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAIS 291

Query: 263 QKNG 274
             NG
Sbjct: 292 MFNG 295



to top

>PABPX_ARATH (Q9ZQA8) Probable polyadenylate-binding protein At2g36660|
           (Poly(A)-binding protein At2g36660) (PABP)
          Length = 609

 Score = 55.8 bits (133), Expect = 5e-08
 Identities = 32/86 (37%), Positives = 48/86 (55%)
 Frame = +2

Query: 56  YDEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAE 235
           ++EQ    K + ++V  +  + TE  LR+ FS CG I   ++M D+ G SKGFGFV F+ 
Sbjct: 294 HEEQKMIAKVSNIYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEKGKSKGFGFVCFST 353

Query: 236 RECAYIAKRQKNGVELQGKRLAVDLS 313
            E A  A +  +G    GK L V ++
Sbjct: 354 PEEAIDAVKTFHGQMFHGKPLYVAIA 379



 Score = 52.0 bits (123), Expect = 8e-07
 Identities = 34/131 (25%), Positives = 63/131 (48%), Gaps = 9/131 (6%)
 Frame = +2

Query: 71  RRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAY 250
           RR     VFV  LP S T   L+++F   G IV  ++   ++G S+G+GFV+F + + A+
Sbjct: 107 RRNGVGNVFVKNLPESVTNAVLQDMFKKFGNIVSCKVATLEDGKSRGYGFVQFEQEDAAH 166

Query: 251 IAKRQKNGVELQGKRLAVDLSLDQ------DTLFFGNLCKEWSAEEFEELIHKTFKD--- 403
            A +  N   +  K + V   + +      +  +     K   A+  E+L+ + F +   
Sbjct: 167 AAIQTLNSTIVADKEIYVGKFMKKTDRVKPEEKYTNLYMKNLDADVSEDLLREKFAEFGK 226

Query: 404 VISVDLAMAPN 436
           ++S+ +A   N
Sbjct: 227 IVSLAIAKDEN 237



 Score = 47.4 bits (111), Expect = 2e-05
 Identities = 37/122 (30%), Positives = 57/122 (46%), Gaps = 4/122 (3%)
 Frame = +2

Query: 50  GDYDEQDRRVKGAE----VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFG 217
           G + ++  RVK  E    +++  L    +E  LRE F+  G+IV L I KD+N + +G+ 
Sbjct: 185 GKFMKKTDRVKPEEKYTNLYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENRLCRGYA 244

Query: 218 FVRFAERECAYIAKRQKNGVELQGKRLAVDLSLDQDTLFFGNLCKEWSAEEFEELIHKTF 397
           FV F   E A  A    NG +   K            L+ G   K+    E E+L+ + F
Sbjct: 245 FVNFDNPEDARRAAETVNGTKFGSK-----------CLYVGRAQKK---AEREQLLREQF 290

Query: 398 KD 403
           K+
Sbjct: 291 KE 292



 Score = 44.7 bits (104), Expect = 1e-04
 Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
 Frame = +2

Query: 86  AEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKD-QNGVSKGFGFVRFAERECAYIAKR 262
           A ++VG L  S TEG L + F+    +  +R+ KD  +G S  +G+  F  R+ A +A  
Sbjct: 24  ASLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAIE 83

Query: 263 QKNGVELQGKRLAV 304
           +KN   L GK + V
Sbjct: 84  KKNNSLLNGKMIRV 97



to top

>HNRPD_HUMAN (Q14103) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)|
           (AU-rich element RNA-binding protein 1)
          Length = 355

 Score = 55.5 bits (132), Expect = 7e-08
 Identities = 45/131 (34%), Positives = 64/131 (48%), Gaps = 6/131 (4%)
 Frame = +2

Query: 89  EVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQ-NGVSKGFGFVRFAERECAYIAKRQ 265
           ++F+GGL    T+  L++ FS  GE+VD  +  D   G S+GFGFV F E E       Q
Sbjct: 98  KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157

Query: 266 K----NGVELQGKRL-AVDLSLDQDTLFFGNLCKEWSAEEFEELIHKTFKDVISVDLAMA 430
           K    NG  +  KR  A+        +F G L  +   E+  E     F +V S++L M 
Sbjct: 158 KEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYF-GGFGEVESIELPM- 215

Query: 431 PNLDSSTSKRR 463
              D+ T+KRR
Sbjct: 216 ---DNKTNKRR 223



to top

>DAZP1_XENLA (Q98SJ2) DAZ-associated protein 1 (Deleted in|
           azoospermia-associated protein 1) (Proline-rich Vg1
           mRNA-binding protein)
          Length = 360

 Score = 54.7 bits (130), Expect = 1e-07
 Identities = 28/53 (52%), Positives = 36/53 (67%), Gaps = 1/53 (1%)
 Frame = +2

Query: 89  EVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQ-NGVSKGFGFVRFAEREC 244
           ++FVGGL  S T+ TLR  FS  GE+VD  IMKD+    S+GFGFV+F +  C
Sbjct: 11  KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNC 63



 Score = 40.0 bits (92), Expect = 0.003
 Identities = 24/107 (22%), Positives = 53/107 (49%), Gaps = 1/107 (0%)
 Frame = +2

Query: 11  GEEPKMDRRAASHGDYDEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKD 190
           G +P+  R        + +    +  ++FVGG+P +  E  L+E F+  G + ++ ++ D
Sbjct: 89  GMQPERSRPREGWQQKEPRTENSRSNKIFVGGIPHNCGETELKEYFNRFGVVTEVVMIYD 148

Query: 191 -QNGVSKGFGFVRFAERECAYIAKRQKNGVELQGKRLAVDLSLDQDT 328
            +    +GFGF+ F + +    A    +  ++ GK++ V  +  +D+
Sbjct: 149 AEKQRPRGFGFITFEDEQSVDQAVNM-HFHDIMGKKVEVKRAEPRDS 194



to top

>DAZP1_MOUSE (Q9JII5) DAZ-associated protein 1 (Deleted in|
           azoospermia-associated protein 1)
          Length = 406

 Score = 54.7 bits (130), Expect = 1e-07
 Identities = 28/53 (52%), Positives = 36/53 (67%), Gaps = 1/53 (1%)
 Frame = +2

Query: 89  EVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQ-NGVSKGFGFVRFAEREC 244
           ++FVGGL  S T+ TLR  FS  GE+VD  IMKD+    S+GFGFV+F +  C
Sbjct: 11  KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNC 63



 Score = 39.3 bits (90), Expect = 0.005
 Identities = 23/84 (27%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
 Frame = +2

Query: 80  KGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKD-QNGVSKGFGFVRFAERECAYIA 256
           K  ++FVGG+P +  E  LRE F   G + ++ ++ D +    +GFGF+ F + +    A
Sbjct: 111 KSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQA 170

Query: 257 KRQKNGVELQGKRLAVDLSLDQDT 328
               +  ++ GK++ V  +  +D+
Sbjct: 171 VNM-HFHDIMGKKVEVKRAEPRDS 193



to top

>DAZP1_HUMAN (Q96EP5) DAZ-associated protein 1 (Deleted in|
           azoospermia-associated protein 1)
          Length = 407

 Score = 54.7 bits (130), Expect = 1e-07
 Identities = 28/53 (52%), Positives = 36/53 (67%), Gaps = 1/53 (1%)
 Frame = +2

Query: 89  EVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQ-NGVSKGFGFVRFAEREC 244
           ++FVGGL  S T+ TLR  FS  GE+VD  IMKD+    S+GFGFV+F +  C
Sbjct: 11  KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNC 63



 Score = 39.3 bits (90), Expect = 0.005
 Identities = 23/84 (27%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
 Frame = +2

Query: 80  KGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKD-QNGVSKGFGFVRFAERECAYIA 256
           K  ++FVGG+P +  E  LRE F   G + ++ ++ D +    +GFGF+ F + +    A
Sbjct: 111 KSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQA 170

Query: 257 KRQKNGVELQGKRLAVDLSLDQDT 328
               +  ++ GK++ V  +  +D+
Sbjct: 171 VNM-HFHDIMGKKVEVKRAEPRDS 193



to top

>HNRPD_RAT (Q9JJ54) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)|
           (AU-rich element RNA-binding protein 1)
          Length = 353

 Score = 54.7 bits (130), Expect = 1e-07
 Identities = 49/165 (29%), Positives = 73/165 (44%), Gaps = 13/165 (7%)
 Frame = +2

Query: 8   EGEEPKMDRRAASHGDYDEQDRRVKGA-------EVFVGGLPRSATEGTLREIFSTCGEI 166
           EG +    +     G  +   R  + A       ++F+GGL    T+  L++ FS  G++
Sbjct: 62  EGAKIDASKNEEDEGHSNSSPRHTEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGDV 121

Query: 167 VDLRIMKDQ-NGVSKGFGFVRFAERECAYIAKRQK----NGVELQGKRL-AVDLSLDQDT 328
           VD  +  D   G S+GFGFV F E E       QK    NG  +  KR  A+        
Sbjct: 122 VDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKK 181

Query: 329 LFFGNLCKEWSAEEFEELIHKTFKDVISVDLAMAPNLDSSTSKRR 463
           +F G L  +   E+  E     F +V S++L M    D+ T+KRR
Sbjct: 182 IFVGGLSPDTPEEKIREYF-GGFGEVESIELPM----DNKTNKRR 221



to top

>PABP2_ARATH (P42731) Polyadenylate-binding protein 2 (Poly(A)-binding protein|
           2) (PABP 2)
          Length = 629

 Score = 54.3 bits (129), Expect = 2e-07
 Identities = 32/99 (32%), Positives = 52/99 (52%)
 Frame = +2

Query: 17  EPKMDRRAASHGDYDEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQN 196
           E + + R     +  E   + + + ++V  L  S ++  L+EIFS  G +   ++M+D N
Sbjct: 295 ERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPN 354

Query: 197 GVSKGFGFVRFAERECAYIAKRQKNGVELQGKRLAVDLS 313
           G SKG GFV FA  E A  A  Q +G  ++ K L V ++
Sbjct: 355 GTSKGSGFVAFATPEEATEAMSQLSGKMIESKPLYVAIA 393



 Score = 54.3 bits (129), Expect = 2e-07
 Identities = 29/82 (35%), Positives = 43/82 (52%)
 Frame = +2

Query: 59  DEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAER 238
           D   RR     +F+  L  S     L + FS+ G IV  ++  D +G SKG+GFV++A  
Sbjct: 115 DPSVRRSGAGNIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDSSGQSKGYGFVQYANE 174

Query: 239 ECAYIAKRQKNGVELQGKRLAV 304
           E A  A  + NG+ L  K++ V
Sbjct: 175 ESAQKAIEKLNGMLLNDKQVYV 196



 Score = 49.7 bits (117), Expect = 4e-06
 Identities = 28/78 (35%), Positives = 36/78 (46%)
 Frame = +2

Query: 59  DEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAER 238
           D    + K   V+V  L  S T+  L+  F   G+I    +MKD  G SKGFGFV F   
Sbjct: 206 DSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENA 265

Query: 239 ECAYIAKRQKNGVELQGK 292
           + A  A    NG +   K
Sbjct: 266 DDAARAVESLNGHKFDDK 283



to top

>ROC1_NICSY (Q08935) 29 kDa ribonucleoprotein A, chloroplast precursor (CP29A)|
          Length = 273

 Score = 53.9 bits (128), Expect = 2e-07
 Identities = 29/74 (39%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
 Frame = +2

Query: 89  EVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQ-NGVSKGFGFVRFAERECAYIAKRQ 265
           ++FVG LP SA    L E+F   G +  + ++ D+  G S+GFGFV  + +E    A +Q
Sbjct: 88  KIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQ 147

Query: 266 KNGVELQGKRLAVD 307
            NG EL G+ L V+
Sbjct: 148 FNGYELDGRALRVN 161



 Score = 48.5 bits (114), Expect = 8e-06
 Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
 Frame = +2

Query: 50  GDYDEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQN-GVSKGFGFVR 226
           G +D  +R      V+VG L     +  L  +FS  G++VD +++ D++ G S+GFGFV 
Sbjct: 182 GSFDSSNR------VYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVT 235

Query: 227 FAERECAYIAKRQKNGVELQGKRLAV 304
           ++  E    A    +GV+L G+ + V
Sbjct: 236 YSSAEEVNNAIESLDGVDLNGRAIRV 261



to top

>ELAV4_HUMAN (P26378) ELAV-like protein 4 (Paraneoplastic encephalomyelitis|
           antigen HuD) (Hu-antigen D)
          Length = 380

 Score = 53.9 bits (128), Expect = 2e-07
 Identities = 29/72 (40%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
 Frame = +2

Query: 77  VKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQ-NGVSKGFGFVRFAERECAYI 253
           ++ A ++V GLP++ T+  L ++FS  G I+  RI+ DQ  GVS+G GF+RF +R  A  
Sbjct: 129 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEE 188

Query: 254 AKRQKNGVELQG 289
           A +  NG +  G
Sbjct: 189 AIKGLNGQKPSG 200



 Score = 48.1 bits (113), Expect = 1e-05
 Identities = 31/104 (29%), Positives = 53/104 (50%), Gaps = 7/104 (6%)
 Frame = +2

Query: 92  VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQ-NGVSKGFGFVRFAERECAYIAKRQK 268
           + V  LP++ T+   R +F + GEI   ++++D+  G S G+GFV + + + A  A    
Sbjct: 48  LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 107

Query: 269 NGVELQGKRLAV------DLSLDQDTLFFGNLCKEWSAEEFEEL 382
           NG+ LQ K + V        S+    L+   L K  + +E E+L
Sbjct: 108 NGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQL 151



 Score = 35.8 bits (81), Expect = 0.057
 Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
 Frame = +2

Query: 92  VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQN-GVSKGFGFVRFAERECAYIAKRQK 268
           +FV  L   + E  L ++F   G + ++++++D N    KGFGFV     + A +A    
Sbjct: 299 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 358

Query: 269 NGVELQGKRLAVDLSLDQ 322
           NG  L  + L V    ++
Sbjct: 359 NGYRLGDRVLQVSFKTNK 376



to top

>ELAV4_RAT (O09032) ELAV-like protein 4 (Paraneoplastic encephalomyelitis|
           antigen HuD) (Hu-antigen D)
          Length = 373

 Score = 53.9 bits (128), Expect = 2e-07
 Identities = 29/72 (40%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
 Frame = +2

Query: 77  VKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQ-NGVSKGFGFVRFAERECAYI 253
           ++ A ++V GLP++ T+  L ++FS  G I+  RI+ DQ  GVS+G GF+RF +R  A  
Sbjct: 122 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEE 181

Query: 254 AKRQKNGVELQG 289
           A +  NG +  G
Sbjct: 182 AIKGLNGQKPSG 193



 Score = 48.1 bits (113), Expect = 1e-05
 Identities = 31/104 (29%), Positives = 53/104 (50%), Gaps = 7/104 (6%)
 Frame = +2

Query: 92  VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQ-NGVSKGFGFVRFAERECAYIAKRQK 268
           + V  LP++ T+   R +F + GEI   ++++D+  G S G+GFV + + + A  A    
Sbjct: 41  LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 100

Query: 269 NGVELQGKRLAV------DLSLDQDTLFFGNLCKEWSAEEFEEL 382
           NG+ LQ K + V        S+    L+   L K  + +E E+L
Sbjct: 101 NGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQL 144



 Score = 35.8 bits (81), Expect = 0.057
 Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
 Frame = +2

Query: 92  VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQN-GVSKGFGFVRFAERECAYIAKRQK 268
           +FV  L   + E  L ++F   G + ++++++D N    KGFGFV     + A +A    
Sbjct: 292 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 351

Query: 269 NGVELQGKRLAVDLSLDQ 322
           NG  L  + L V    ++
Sbjct: 352 NGYRLGDRVLQVSFKTNK 369



to top

>RBM3_HUMAN (P98179) Putative RNA-binding protein 3 (RNA-binding motif protein|
           3) (RNPL)
          Length = 157

 Score = 53.9 bits (128), Expect = 2e-07
 Identities = 29/74 (39%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
 Frame = +2

Query: 89  EVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGV-SKGFGFVRFAERECAYIAKRQ 265
           ++FVGGL  +  E  L + FS+ G I ++ ++KD+    S+GFGF+ F   E A +A R 
Sbjct: 7   KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRA 66

Query: 266 KNGVELQGKRLAVD 307
            NG  L G+++ VD
Sbjct: 67  MNGESLDGRQIRVD 80



to top

>PABP3_ARATH (O64380) Polyadenylate-binding protein 3 (Poly(A)-binding protein|
           3) (PABP 3)
          Length = 660

 Score = 53.9 bits (128), Expect = 2e-07
 Identities = 44/141 (31%), Positives = 61/141 (43%), Gaps = 5/141 (3%)
 Frame = +2

Query: 59  DEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAER 238
           DE     +   V+V  LP+   E  LR+ F   G I    +M+DQ+G S+ FGFV F   
Sbjct: 220 DENTPTPRFTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECT 279

Query: 239 ECAYIAKRQKNGVELQGKRLAVDLSLDQDTLFFGNLCKEWSAEE-----FEELIHKTFKD 403
           E A  A  + NG+           SL  D L+ G   K+   EE     FE+     F+ 
Sbjct: 280 EAAASAVEKMNGI-----------SLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEK 328

Query: 404 VISVDLAMAPNLDSSTSKRRL 466
               +L +  NLD S    +L
Sbjct: 329 SQGANLYL-KNLDDSVDDEKL 348



 Score = 48.5 bits (114), Expect = 8e-06
 Identities = 28/89 (31%), Positives = 49/89 (55%), Gaps = 5/89 (5%)
 Frame = +2

Query: 62  EQDR-----RVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVR 226
           EQ+R     + +GA +++  L  S  +  L+E+FS  G +   ++M +  G+S+GFGFV 
Sbjct: 319 EQERINRFEKSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVA 378

Query: 227 FAERECAYIAKRQKNGVELQGKRLAVDLS 313
           ++  E A  A  + NG  +  K L + L+
Sbjct: 379 YSNPEEALRALSEMNGKMIGRKPLYIALA 407



 Score = 47.8 bits (112), Expect = 1e-05
 Identities = 35/125 (28%), Positives = 57/125 (45%), Gaps = 14/125 (11%)
 Frame = +2

Query: 59  DEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAER 238
           D   R      +F+  L  S     L E FS+ G I+  ++  D  G SKG+GFV+F + 
Sbjct: 127 DPSTRLSGKGNIFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKE 186

Query: 239 ECAYIAKRQKNGVELQGKRLAV-------DLSLDQDT-------LFFGNLCKEWSAEEFE 376
           E A  A  + NG+ +  K++ V       + + D++T       ++  NL KE   +E  
Sbjct: 187 ESAQAAIDKLNGMLMNDKQVFVGHFIRRQERARDENTPTPRFTNVYVKNLPKEIGEDELR 246

Query: 377 ELIHK 391
           +   K
Sbjct: 247 KTFGK 251



to top

>GRP2_SORBI (Q99070) Glycine-rich RNA-binding protein 2|
          Length = 168

 Score = 53.9 bits (128), Expect = 2e-07
 Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
 Frame = +2

Query: 95  FVGGLPRSATEGTLREIFSTCGEIVDLRIMKD-QNGVSKGFGFVRFAERECAYIAKRQKN 271
           FVGGL  +    TL + F+  G+++D +++ D + G S+GFGFV F+  +    A    N
Sbjct: 11  FVGGLAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQSMLDAIENMN 70

Query: 272 GVELQGKRLAVD 307
           G EL G+ + V+
Sbjct: 71  GKELDGRNITVN 82



to top

>ELAV4_MOUSE (Q61701) ELAV-like protein 4 (Paraneoplastic encephalomyelitis|
           antigen HuD) (Hu-antigen D)
          Length = 385

 Score = 53.9 bits (128), Expect = 2e-07
 Identities = 29/72 (40%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
 Frame = +2

Query: 77  VKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQ-NGVSKGFGFVRFAERECAYI 253
           ++ A ++V GLP++ T+  L ++FS  G I+  RI+ DQ  GVS+G GF+RF +R  A  
Sbjct: 134 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEE 193

Query: 254 AKRQKNGVELQG 289
           A +  NG +  G
Sbjct: 194 AIKGLNGQKPSG 205



 Score = 48.1 bits (113), Expect = 1e-05
 Identities = 31/104 (29%), Positives = 53/104 (50%), Gaps = 7/104 (6%)
 Frame = +2

Query: 92  VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQ-NGVSKGFGFVRFAERECAYIAKRQK 268
           + V  LP++ T+   R +F + GEI   ++++D+  G S G+GFV + + + A  A    
Sbjct: 53  LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 112

Query: 269 NGVELQGKRLAV------DLSLDQDTLFFGNLCKEWSAEEFEEL 382
           NG+ LQ K + V        S+    L+   L K  + +E E+L
Sbjct: 113 NGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQL 156



 Score = 35.8 bits (81), Expect = 0.057
 Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
 Frame = +2

Query: 92  VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQN-GVSKGFGFVRFAERECAYIAKRQK 268
           +FV  L   + E  L ++F   G + ++++++D N    KGFGFV     + A +A    
Sbjct: 304 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 363

Query: 269 NGVELQGKRLAVDLSLDQ 322
           NG  L  + L V    ++
Sbjct: 364 NGYRLGDRVLQVSFKTNK 381



to top

>RT19_ARATH (P39697) 40S ribosomal protein S19, mitochondrial precursor|
          Length = 212

 Score = 53.5 bits (127), Expect = 3e-07
 Identities = 40/137 (29%), Positives = 70/137 (51%), Gaps = 4/137 (2%)
 Frame = +2

Query: 74  RVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQ-NGVSKGFGFVRFAERECAY 250
           R    ++++GGL     E +L++ FS+   + + R+M ++  G S+G+GFV F   + A 
Sbjct: 27  RYMSTKLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSAN 86

Query: 251 IAKRQKNGVELQGKRLAVDLSLDQDTLFFGNLCKEWSAEEFEELIHKTFKDVISVDLAMA 430
            A    NG EL G  ++V+++ D  +L    L  + S EE E+  +K     +  D    
Sbjct: 87  SAISAMNGQELNGFNISVNVAKDWPSL---PLSLDESIEEAEKKENKMMSRSVWKD---- 139

Query: 431 PNLDSSTSKRR---LNR 472
           P +D+   K++   LNR
Sbjct: 140 PFVDAFLMKKKNAALNR 156



to top

>ELAV2_MOUSE (Q60899) ELAV-like protein 2 (Hu-antigen B) (HuB) (ELAV-like|
           neuronal protein 1) (Nervous system-specific RNA-binding
           protein Mel-N1)
          Length = 360

 Score = 53.1 bits (126), Expect = 3e-07
 Identities = 28/72 (38%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
 Frame = +2

Query: 77  VKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQ-NGVSKGFGFVRFAERECAYI 253
           ++ A ++V GLP++ T+  L ++FS  G I+  RI+ DQ  G+S+G GF+RF +R  A  
Sbjct: 122 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEE 181

Query: 254 AKRQKNGVELQG 289
           A +  NG +  G
Sbjct: 182 AIKGLNGQKPPG 193



 Score = 48.5 bits (114), Expect = 8e-06
 Identities = 31/104 (29%), Positives = 54/104 (51%), Gaps = 7/104 (6%)
 Frame = +2

Query: 92  VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQ-NGVSKGFGFVRFAERECAYIAKRQK 268
           + V  LP++ T+  L+ +F + GEI   ++++D+  G S G+GFV + + + A  A    
Sbjct: 41  LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 100

Query: 269 NGVELQGKRLAV------DLSLDQDTLFFGNLCKEWSAEEFEEL 382
           NG+ LQ K + V        S+    L+   L K  + +E E+L
Sbjct: 101 NGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQL 144



 Score = 37.4 bits (85), Expect = 0.019
 Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
 Frame = +2

Query: 92  VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQN-GVSKGFGFVRFAERECAYIAKRQK 268
           +FV  L   A E  L ++F   G + ++++++D N    KGFGFV     + A +A    
Sbjct: 279 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 338

Query: 269 NGVELQGKRLAVDLSLDQ 322
           NG  L  + L V    ++
Sbjct: 339 NGYRLGDRVLQVSFKTNK 356



to top

>PABP1_RAT (Q9EPH8) Polyadenylate-binding protein 1 (Poly(A)-binding protein|
           1) (PABP 1)
          Length = 636

 Score = 53.1 bits (126), Expect = 3e-07
 Identities = 26/71 (36%), Positives = 40/71 (56%)
 Frame = +2

Query: 92  VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKRQKN 271
           V++        +  L+E+F   G  + +++M D++G SKGFGFV F   E A  A  + N
Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252

Query: 272 GVELQGKRLAV 304
           G EL GK++ V
Sbjct: 253 GKELNGKQIYV 263



 Score = 47.8 bits (112), Expect = 1e-05
 Identities = 27/82 (32%), Positives = 44/82 (53%)
 Frame = +2

Query: 59  DEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAER 238
           D   R+     +F+  L +S     L + FS  G I+  +++ D+NG SKG+GFV F  +
Sbjct: 90  DPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQ 148

Query: 239 ECAYIAKRQKNGVELQGKRLAV 304
           E A  A  + NG+ L  +++ V
Sbjct: 149 EAAERAIEKMNGMLLNDRKVFV 170



 Score = 43.5 bits (101), Expect = 3e-04
 Identities = 34/103 (33%), Positives = 53/103 (51%), Gaps = 4/103 (3%)
 Frame = +2

Query: 17  EPKMDRRAASHGDYDE--QDR--RVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIM 184
           + K++R+      +++  QDR  R +G  ++V  L     +  LR+ FS  G I   ++M
Sbjct: 267 QKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVM 326

Query: 185 KDQNGVSKGFGFVRFAERECAYIAKRQKNGVELQGKRLAVDLS 313
            +  G SKGFGFV F+  E A  A  + NG  +  K L V L+
Sbjct: 327 ME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368



to top

>PABP1_MOUSE (P29341) Polyadenylate-binding protein 1 (Poly(A)-binding protein|
           1) (PABP 1)
          Length = 636

 Score = 53.1 bits (126), Expect = 3e-07
 Identities = 26/71 (36%), Positives = 40/71 (56%)
 Frame = +2

Query: 92  VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKRQKN 271
           V++        +  L+E+F   G  + +++M D++G SKGFGFV F   E A  A  + N
Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252

Query: 272 GVELQGKRLAV 304
           G EL GK++ V
Sbjct: 253 GKELNGKQIYV 263



 Score = 47.8 bits (112), Expect = 1e-05
 Identities = 27/82 (32%), Positives = 44/82 (53%)
 Frame = +2

Query: 59  DEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAER 238
           D   R+     +F+  L +S     L + FS  G I+  +++ D+NG SKG+GFV F  +
Sbjct: 90  DPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQ 148

Query: 239 ECAYIAKRQKNGVELQGKRLAV 304
           E A  A  + NG+ L  +++ V
Sbjct: 149 EAAERAIEKMNGMLLNDRKVFV 170



 Score = 43.5 bits (101), Expect = 3e-04
 Identities = 34/103 (33%), Positives = 53/103 (51%), Gaps = 4/103 (3%)
 Frame = +2

Query: 17  EPKMDRRAASHGDYDE--QDR--RVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIM 184
           + K++R+      +++  QDR  R +G  ++V  L     +  LR+ FS  G I   ++M
Sbjct: 267 QKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVM 326

Query: 185 KDQNGVSKGFGFVRFAERECAYIAKRQKNGVELQGKRLAVDLS 313
            +  G SKGFGFV F+  E A  A  + NG  +  K L V L+
Sbjct: 327 ME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368



to top

>ELAV2_RAT (Q8CH84) ELAV-like protein 2 (Hu-antigen B) (HuB)|
          Length = 359

 Score = 53.1 bits (126), Expect = 3e-07
 Identities = 28/72 (38%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
 Frame = +2

Query: 77  VKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQ-NGVSKGFGFVRFAERECAYI 253
           ++ A ++V GLP++ T+  L ++FS  G I+  RI+ DQ  G+S+G GF+RF +R  A  
Sbjct: 122 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEE 181

Query: 254 AKRQKNGVELQG 289
           A +  NG +  G
Sbjct: 182 AIKGLNGQKPPG 193



 Score = 47.8 bits (112), Expect = 1e-05
 Identities = 30/99 (30%), Positives = 52/99 (52%), Gaps = 7/99 (7%)
 Frame = +2

Query: 107 LPRSATEGTLREIFSTCGEIVDLRIMKDQ-NGVSKGFGFVRFAERECAYIAKRQKNGVEL 283
           LP++ T+  L+ +F + GEI   ++++D+  G S G+GFV + + + A  A    NG+ L
Sbjct: 46  LPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRL 105

Query: 284 QGKRLAV------DLSLDQDTLFFGNLCKEWSAEEFEEL 382
           Q K + V        S+    L+   L K  + +E E+L
Sbjct: 106 QTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQL 144



 Score = 37.4 bits (85), Expect = 0.019
 Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
 Frame = +2

Query: 92  VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQN-GVSKGFGFVRFAERECAYIAKRQK 268
           +FV  L   A E  L ++F   G + ++++++D N    KGFGFV     + A +A    
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337

Query: 269 NGVELQGKRLAVDLSLDQ 322
           NG  L  + L V    ++
Sbjct: 338 NGYRLGDRVLQVSFKTNK 355



to top

>ELAV2_PONPY (Q5R9Z6) ELAV-like protein 2|
          Length = 359

 Score = 53.1 bits (126), Expect = 3e-07
 Identities = 28/72 (38%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
 Frame = +2

Query: 77  VKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQ-NGVSKGFGFVRFAERECAYI 253
           ++ A ++V GLP++ T+  L ++FS  G I+  RI+ DQ  G+S+G GF+RF +R  A  
Sbjct: 122 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEE 181

Query: 254 AKRQKNGVELQG 289
           A +  NG +  G
Sbjct: 182 AIKGLNGQKPPG 193



 Score = 48.5 bits (114), Expect = 8e-06
 Identities = 31/104 (29%), Positives = 54/104 (51%), Gaps = 7/104 (6%)
 Frame = +2

Query: 92  VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQ-NGVSKGFGFVRFAERECAYIAKRQK 268
           + V  LP++ T+  L+ +F + GEI   ++++D+  G S G+GFV + + + A  A    
Sbjct: 41  LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 100

Query: 269 NGVELQGKRLAV------DLSLDQDTLFFGNLCKEWSAEEFEEL 382
           NG+ LQ K + V        S+    L+   L K  + +E E+L
Sbjct: 101 NGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQL 144



 Score = 37.4 bits (85), Expect = 0.019
 Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
 Frame = +2

Query: 92  VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQN-GVSKGFGFVRFAERECAYIAKRQK 268
           +FV  L   A E  L ++F   G + ++++++D N    KGFGFV     + A +A    
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337

Query: 269 NGVELQGKRLAVDLSLDQ 322
           NG  L  + L V    ++
Sbjct: 338 NGYRLGDRVLQVSFKTNK 355



to top

>ELAV2_HUMAN (Q12926) ELAV-like protein 2 (Hu-antigen B) (HuB) (ELAV-like|
           neuronal protein 1) (Nervous system-specific RNA-binding
           protein Hel-N1)
          Length = 359

 Score = 53.1 bits (126), Expect = 3e-07
 Identities = 28/72 (38%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
 Frame = +2

Query: 77  VKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQ-NGVSKGFGFVRFAERECAYI 253
           ++ A ++V GLP++ T+  L ++FS  G I+  RI+ DQ  G+S+G GF+RF +R  A  
Sbjct: 122 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEE 181

Query: 254 AKRQKNGVELQG 289
           A +  NG +  G
Sbjct: 182 AIKGLNGQKPPG 193



 Score = 48.5 bits (114), Expect = 8e-06
 Identities = 31/104 (29%), Positives = 54/104 (51%), Gaps = 7/104 (6%)
 Frame = +2

Query: 92  VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQ-NGVSKGFGFVRFAERECAYIAKRQK 268
           + V  LP++ T+  L+ +F + GEI   ++++D+  G S G+GFV + + + A  A    
Sbjct: 41  LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 100

Query: 269 NGVELQGKRLAV------DLSLDQDTLFFGNLCKEWSAEEFEEL 382
           NG+ LQ K + V        S+    L+   L K  + +E E+L
Sbjct: 101 NGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQL 144



 Score = 37.4 bits (85), Expect = 0.019
 Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
 Frame = +2

Query: 92  VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQN-GVSKGFGFVRFAERECAYIAKRQK 268
           +FV  L   A E  L ++F   G + ++++++D N    KGFGFV     + A +A    
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337

Query: 269 NGVELQGKRLAVDLSLDQ 322
           NG  L  + L V    ++
Sbjct: 338 NGYRLGDRVLQVSFKTNK 355



to top

>GRP8_ARATH (Q03251) Glycine-rich RNA-binding protein 8 (CCR1 protein)|
          Length = 169

 Score = 53.1 bits (126), Expect = 3e-07
 Identities = 27/72 (37%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
 Frame = +2

Query: 95  FVGGLPRSATEGTLREIFSTCGEIVDLRIMKD-QNGVSKGFGFVRFAERECAYIAKRQKN 271
           FVGGL  +  +  L+  FS  G+++D +I+ D ++G S+GFGFV F + +    A  + N
Sbjct: 9   FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68

Query: 272 GVELQGKRLAVD 307
           G EL G+ + V+
Sbjct: 69  GKELDGRVITVN 80



to top

>GRP10_BRANA (Q05966) Glycine-rich RNA-binding protein 10|
          Length = 169

 Score = 53.1 bits (126), Expect = 3e-07
 Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
 Frame = +2

Query: 95  FVGGLPRSATEGTLREIFSTCGEIVDLRIMKD-QNGVSKGFGFVRFAERECAYIAKRQKN 271
           FVGGL  +  +  L   FS  GE++D +I+ D + G S+GFGFV F + +    A  + N
Sbjct: 9   FVGGLAWATGDAELERTFSQFGEVIDSKIINDRETGRSRGFGFVTFKDEKSMKDAIDEMN 68

Query: 272 GVELQGKRLAVD 307
           G EL G+ + V+
Sbjct: 69  GKELDGRTITVN 80



to top

>HRP1_YEAST (Q99383) Nuclear polyadenylated RNA-binding protein 4 (Cleavage|
           factor IB) (CFIB)
          Length = 534

 Score = 52.8 bits (125), Expect = 4e-07
 Identities = 43/157 (27%), Positives = 72/157 (45%), Gaps = 7/157 (4%)
 Frame = +2

Query: 14  EEPKMDRRAASHGDYDEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKD- 190
           + P   +   +  +  + D   +  ++F+GGL    TE  LRE F   G + DL+IMKD 
Sbjct: 135 QSPPQQQVTQTKEERSKADLSKESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDP 194

Query: 191 QNGVSKGFGFVRFAERECAYIAKRQKNGVELQGKRLAVDLSLDQD------TLFFGNLCK 352
             G S+GFGF+ F   + + + +  K    L GK +    ++ +D       +F G +  
Sbjct: 195 ATGRSRGFGFLSF--EKPSSVDEVVKTQHILDGKVIDPKRAIPRDEQDKTGKIFVGGIGP 252

Query: 353 EWSAEEFEELIHKTFKDVISVDLAMAPNLDSSTSKRR 463
           +   +EFEE   + +  +I   L     LD  T + R
Sbjct: 253 DVRPKEFEEFFSQ-WGTIIDAQLM----LDKDTGQSR 284



 Score = 43.5 bits (101), Expect = 3e-04
 Identities = 24/58 (41%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
 Frame = +2

Query: 59  DEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQN-GVSKGFGFVRF 229
           DEQD   K  ++FVGG+          E FS  G I+D ++M D++ G S+GFGFV +
Sbjct: 237 DEQD---KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTY 291



to top

>SF3B4_HUMAN (Q15427) Splicing factor 3B subunit 4 (Spliceosome-associated|
           protein 49) (SAP 49) (SF3b50) (Pre-mRNA-splicing factor
           SF3b 49 kDa subunit)
          Length = 424

 Score = 52.8 bits (125), Expect = 4e-07
 Identities = 38/116 (32%), Positives = 59/116 (50%), Gaps = 8/116 (6%)
 Frame = +2

Query: 74  RVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQ-NGVSKGFGFVRFAERECAY 250
           R + A V+VGGL    +E  L E+F   G +V+  + KD+  G  +G+GFV F   E A 
Sbjct: 9   RNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDAD 68

Query: 251 IAKRQKNGVELQGKRLAVDLSLDQD-------TLFFGNLCKEWSAEEFEELIHKTF 397
            A +  N ++L GK + V+ +   +        +F GNL      E  E+L++ TF
Sbjct: 69  YAIKIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNL----DPEIDEKLLYDTF 120



to top

>BOLL_MACFA (Q8WP23) Protein boule-like|
          Length = 283

 Score = 52.8 bits (125), Expect = 4e-07
 Identities = 25/71 (35%), Positives = 42/71 (59%)
 Frame = +2

Query: 92  VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKRQKN 271
           +FVGG+     E  LR+ FS  G + +++I+ D+ GVSKG+GFV F  +E A    ++  
Sbjct: 35  IFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDRAGVSKGYGFVTFETQEDAQKILQEAE 94

Query: 272 GVELQGKRLAV 304
            +  + K+L +
Sbjct: 95  KLNYKDKKLNI 105



to top

>BOLL_HUMAN (Q8N9W6) Protein boule-like|
          Length = 283

 Score = 52.8 bits (125), Expect = 4e-07
 Identities = 25/71 (35%), Positives = 42/71 (59%)
 Frame = +2

Query: 92  VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKRQKN 271
           +FVGG+     E  LR+ FS  G + +++I+ D+ GVSKG+GFV F  +E A    ++  
Sbjct: 35  IFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDRAGVSKGYGFVTFETQEDAQKILQEAE 94

Query: 272 GVELQGKRLAV 304
            +  + K+L +
Sbjct: 95  KLNYKDKKLNI 105



to top

>TRA2A_HUMAN (Q13595) Transformer-2 protein homolog (TRA-2 alpha)|
          Length = 282

 Score = 52.4 bits (124), Expect = 6e-07
 Identities = 37/104 (35%), Positives = 54/104 (51%), Gaps = 9/104 (8%)
 Frame = +2

Query: 32  RRAASHGDYDEQDRRVKGAE--------VFVGGLPRSATEGTLREIFSTCGEIVDLRIMK 187
           RR+ SH     + RR  G+         + V GL    TE  LRE+FS  G +  + ++ 
Sbjct: 94  RRSRSHSPMSNR-RRHTGSRANPDPNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVY 152

Query: 188 DQN-GVSKGFGFVRFAERECAYIAKRQKNGVELQGKRLAVDLSL 316
           DQ  G S+GF FV F   + +  A  + NG+EL G+R+ VD S+
Sbjct: 153 DQRTGRSRGFAFVYFERIDDSKEAMERANGMELDGRRIRVDYSI 196



to top

>GRP2_SINAL (P49311) Glycine-rich RNA-binding protein GRP2A|
          Length = 169

 Score = 52.4 bits (124), Expect = 6e-07
 Identities = 29/72 (40%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
 Frame = +2

Query: 95  FVGGLPRSATEGTLREIFSTCGEIVDLRIMKD-QNGVSKGFGFVRFAERECAYIAKRQKN 271
           FVGGL  +  E +L   FS  GE+VD +I+ D + G S+GFGFV F + +    A    N
Sbjct: 11  FVGGLAWATDERSLETAFSQFGELVDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEGMN 70

Query: 272 GVELQGKRLAVD 307
           G +L G+ + V+
Sbjct: 71  GQDLDGRSITVN 82



to top

>PABP_DROME (P21187) Polyadenylate-binding protein (Poly(A)-binding protein)|
           (PABP)
          Length = 634

 Score = 52.4 bits (124), Expect = 6e-07
 Identities = 35/122 (28%), Positives = 56/122 (45%), Gaps = 9/122 (7%)
 Frame = +2

Query: 59  DEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAER 238
           D   RR     VF+  L R+     + + FS  G I+  ++  D+ G SKG+GFV F   
Sbjct: 81  DPSLRRSGVGNVFIKNLDRAIDNKAIYDTFSAFGNILSCKVATDEKGNSKGYGFVHFETE 140

Query: 239 ECAYIAKRQKNGVELQGKRLAV---------DLSLDQDTLFFGNLCKEWSAEEFEELIHK 391
           E A  +  + NG+ L GK++ V         +  L +    F N+  +   E+F++   K
Sbjct: 141 EAANTSIDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFTEDFDDEKLK 200

Query: 392 TF 397
            F
Sbjct: 201 EF 202



 Score = 51.6 bits (122), Expect = 1e-06
 Identities = 39/126 (30%), Positives = 59/126 (46%), Gaps = 1/126 (0%)
 Frame = +2

Query: 92  VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKRQKN 271
           V+V        +  L+E F   G+I   ++M  ++G SKGFGFV F   E A  A +  N
Sbjct: 185 VYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQALN 244

Query: 272 GVEL-QGKRLAVDLSLDQDTLFFGNLCKEWSAEEFEELIHKTFKDVISVDLAMAPNLDSS 448
           G ++ +GK L V  +  +         ++    +FEEL  K  + V  V+L    NLD +
Sbjct: 245 GKDMGEGKSLYVARAQKKAER------QQELKRKFEELKQKRHESVFGVNL-YVKNLDDT 297

Query: 449 TSKRRL 466
               RL
Sbjct: 298 IDDDRL 303



 Score = 45.4 bits (106), Expect = 7e-05
 Identities = 29/79 (36%), Positives = 39/79 (49%)
 Frame = +2

Query: 77  VKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIA 256
           V G  ++V  L  +  +  LR  FS  G I   ++M D+ G SKGFGFV F     A  A
Sbjct: 284 VFGVNLYVKNLDDTIDDDRLRIAFSPYGNITSAKVMTDEEGRSKGFGFVCFNAASEATCA 343

Query: 257 KRQKNGVELQGKRLAVDLS 313
             + NG  +  K L V L+
Sbjct: 344 VTELNGRVVGSKPLYVALA 362



 Score = 33.5 bits (75), Expect = 0.28
 Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
 Frame = +2

Query: 86  AEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQ-NGVSKGFGFVRFAE 235
           A ++VG LP+   E  L + FS+ G ++ +R+ +D     S G+ +V F +
Sbjct: 2   ASLYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQ 52



to top

>GRPA_MAIZE (P10979) Glycine-rich RNA-binding, abscisic acid-inducible protein|
          Length = 157

 Score = 52.4 bits (124), Expect = 6e-07
 Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
 Frame = +2

Query: 95  FVGGLPRSATEGTLREIFSTCGEIVDLRIMKD-QNGVSKGFGFVRFAERECAYIAKRQKN 271
           FVGGL  + +  +L   F++ GEI+D +++ D + G S+GFGFV F+       A    N
Sbjct: 11  FVGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSENSMLDAIENMN 70

Query: 272 GVELQGKRLAVD 307
           G EL G+ + V+
Sbjct: 71  GKELDGRNITVN 82



to top

>GRP1_DAUCA (Q03878) Glycine-rich RNA-binding protein|
          Length = 157

 Score = 52.4 bits (124), Expect = 6e-07
 Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
 Frame = +2

Query: 95  FVGGLPRSATEGTLREIFSTCGEIVDLRIMKD-QNGVSKGFGFVRFAERECAYIAKRQKN 271
           FVGGL  +  + +L + FS  G+I D +I+ D + G S+GFGFV F + +    A    N
Sbjct: 9   FVGGLAWATNDESLEQAFSQFGDITDSKIINDRETGRSRGFGFVTFKDEKSMRDAIEGMN 68

Query: 272 GVELQGKRLAVD 307
           G EL G+ + V+
Sbjct: 69  GQELDGRNITVN 80



to top

>TRA2A_MOUSE (Q6PFR5) Transformer-2 protein homolog (TRA-2 alpha)|
          Length = 281

 Score = 52.4 bits (124), Expect = 6e-07
 Identities = 37/104 (35%), Positives = 54/104 (51%), Gaps = 9/104 (8%)
 Frame = +2

Query: 32  RRAASHGDYDEQDRRVKGAE--------VFVGGLPRSATEGTLREIFSTCGEIVDLRIMK 187
           RR+ SH     + RR  G+         + V GL    TE  LRE+FS  G +  + ++ 
Sbjct: 92  RRSRSHSPMSNR-RRHTGSRANPDPNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVY 150

Query: 188 DQN-GVSKGFGFVRFAERECAYIAKRQKNGVELQGKRLAVDLSL 316
           DQ  G S+GF FV F   + +  A  + NG+EL G+R+ VD S+
Sbjct: 151 DQRTGRSRGFAFVYFERIDDSKEAMERANGMELDGRRIRVDYSI 194



to top

>BOLL_MOUSE (Q924M5) Protein boule-like|
          Length = 281

 Score = 52.4 bits (124), Expect = 6e-07
 Identities = 24/71 (33%), Positives = 42/71 (59%)
 Frame = +2

Query: 92  VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKRQKN 271
           +FVGG+     E  LR+ FS  G + +++I+ D+ GVSKG+GF+ F  +E A    ++  
Sbjct: 35  IFVGGIDFKTNENDLRKFFSQYGSVKEVKIVNDRAGVSKGYGFITFETQEDAQKILQEAE 94

Query: 272 GVELQGKRLAV 304
            +  + K+L +
Sbjct: 95  KLNYKDKKLNI 105



to top

>PABP3_HUMAN (Q9H361) Polyadenylate-binding protein 3 (Poly(A)-binding protein|
           3) (PABP 3) (Testis-specific poly(A)-binding protein)
          Length = 631

 Score = 52.0 bits (123), Expect = 8e-07
 Identities = 25/71 (35%), Positives = 40/71 (56%)
 Frame = +2

Query: 92  VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKRQKN 271
           V++        +  L+++F   G  + +++M D++G SKGFGFV F   E A  A  + N
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252

Query: 272 GVELQGKRLAV 304
           G EL GK++ V
Sbjct: 253 GKELNGKQIYV 263



 Score = 48.1 bits (113), Expect = 1e-05
 Identities = 28/82 (34%), Positives = 43/82 (52%)
 Frame = +2

Query: 59  DEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAER 238
           D   R+     +FV  L +S     L +  S  G I+   ++ D+NG SKG+GFV F   
Sbjct: 90  DPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENG-SKGYGFVHFETH 148

Query: 239 ECAYIAKRQKNGVELQGKRLAV 304
           E A  A ++ NG+ L G+++ V
Sbjct: 149 EAAERAIKKMNGMLLNGRKVFV 170



 Score = 40.8 bits (94), Expect = 0.002
 Identities = 33/103 (32%), Positives = 52/103 (50%), Gaps = 4/103 (3%)
 Frame = +2

Query: 17  EPKMDRRAASHGDYDE--QDR--RVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIM 184
           + K++R+      +++  QDR  R +   ++V  L     +  LR+ FS  G I   ++M
Sbjct: 267 QKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVM 326

Query: 185 KDQNGVSKGFGFVRFAERECAYIAKRQKNGVELQGKRLAVDLS 313
            +  G SKGFGFV F+  E A  A  + NG  +  K L V L+
Sbjct: 327 ME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368



to top

>PABP1_HUMAN (P11940) Polyadenylate-binding protein 1 (Poly(A)-binding protein|
           1) (PABP 1)
          Length = 636

 Score = 52.0 bits (123), Expect = 8e-07
 Identities = 25/71 (35%), Positives = 40/71 (56%)
 Frame = +2

Query: 92  VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKRQKN 271
           V++        +  L+++F   G  + +++M D++G SKGFGFV F   E A  A  + N
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252

Query: 272 GVELQGKRLAV 304
           G EL GK++ V
Sbjct: 253 GKELNGKQIYV 263



 Score = 47.8 bits (112), Expect = 1e-05
 Identities = 27/82 (32%), Positives = 44/82 (53%)
 Frame = +2

Query: 59  DEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAER 238
           D   R+     +F+  L +S     L + FS  G I+  +++ D+NG SKG+GFV F  +
Sbjct: 90  DPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQ 148

Query: 239 ECAYIAKRQKNGVELQGKRLAV 304
           E A  A  + NG+ L  +++ V
Sbjct: 149 EAAERAIEKMNGMLLNDRKVFV 170



 Score = 43.5 bits (101), Expect = 3e-04
 Identities = 34/103 (33%), Positives = 53/103 (51%), Gaps = 4/103 (3%)
 Frame = +2

Query: 17  EPKMDRRAASHGDYDE--QDR--RVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIM 184
           + K++R+      +++  QDR  R +G  ++V  L     +  LR+ FS  G I   ++M
Sbjct: 267 QKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVM 326

Query: 185 KDQNGVSKGFGFVRFAERECAYIAKRQKNGVELQGKRLAVDLS 313
            +  G SKGFGFV F+  E A  A  + NG  +  K L V L+
Sbjct: 327 ME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368



to top

>PABP1_BOVIN (P61286) Polyadenylate-binding protein 1 (Poly(A)-binding protein|
           1) (PABP 1)
          Length = 636

 Score = 52.0 bits (123), Expect = 8e-07
 Identities = 25/71 (35%), Positives = 40/71 (56%)
 Frame = +2

Query: 92  VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKRQKN 271
           V++        +  L+++F   G  + +++M D++G SKGFGFV F   E A  A  + N
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252

Query: 272 GVELQGKRLAV 304
           G EL GK++ V
Sbjct: 253 GKELNGKQIYV 263



 Score = 47.8 bits (112), Expect = 1e-05
 Identities = 27/82 (32%), Positives = 44/82 (53%)
 Frame = +2

Query: 59  DEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAER 238
           D   R+     +F+  L +S     L + FS  G I+  +++ D+NG SKG+GFV F  +
Sbjct: 90  DPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQ 148

Query: 239 ECAYIAKRQKNGVELQGKRLAV 304
           E A  A  + NG+ L  +++ V
Sbjct: 149 EAAERAIEKMNGMLLNDRKVFV 170



 Score = 43.5 bits (101), Expect = 3e-04
 Identities = 34/103 (33%), Positives = 53/103 (51%), Gaps = 4/103 (3%)
 Frame = +2

Query: 17  EPKMDRRAASHGDYDE--QDR--RVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIM 184
           + K++R+      +++  QDR  R +G  ++V  L     +  LR+ FS  G I   ++M
Sbjct: 267 QKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVM 326

Query: 185 KDQNGVSKGFGFVRFAERECAYIAKRQKNGVELQGKRLAVDLS 313
            +  G SKGFGFV F+  E A  A  + NG  +  K L V L+
Sbjct: 327 ME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368



to top

>IST3_YEAST (P40565) U2 snRNP component IST3 (U2 snRNP protein SNU17)|
           (Increased sodium tolerance protein 3)
          Length = 148

 Score = 52.0 bits (123), Expect = 8e-07
 Identities = 26/88 (29%), Positives = 49/88 (55%), Gaps = 1/88 (1%)
 Frame = +2

Query: 47  HGDYDEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQN-GVSKGFGFV 223
           H +Y +       A +++G L R  TEG +  +FS  G  VD+ + +D+N G S+GF ++
Sbjct: 24  HNEYKDN------AYIYIGNLNRELTEGDILTVFSEYGVPVDVILSRDENTGESQGFAYL 77

Query: 224 RFAERECAYIAKRQKNGVELQGKRLAVD 307
           ++ ++    +A    NG ++ G+ L +D
Sbjct: 78  KYEDQRSTILAVDNLNGFKIGGRALKID 105



to top

>ROC2_NICPL (P49314) 31 kDa ribonucleoprotein, chloroplast precursor (CP-RBP31)|
          Length = 292

 Score = 52.0 bits (123), Expect = 8e-07
 Identities = 28/83 (33%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
 Frame = +2

Query: 62  EQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQ-NGVSKGFGFVRFAER 238
           EQ R  +  ++FVG LP S     L  +F   G +  + ++ D+ +G S+GFGFV  + +
Sbjct: 80  EQPRFSEDLKLFVGNLPFSVDSAALAGLFERAGNVEIVEVIYDKLSGRSRGFGFVTMSTK 139

Query: 239 ECAYIAKRQKNGVELQGKRLAVD 307
           E    A++Q NG E+ G+ + V+
Sbjct: 140 EEVEAAEQQFNGYEIDGRAIRVN 162



 Score = 47.8 bits (112), Expect = 1e-05
 Identities = 25/72 (34%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
 Frame = +2

Query: 92  VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQ-NGVSKGFGFVRFAERECAYIAKRQK 268
           V+VG L     +  L+E+FS  G +VD +++ D+ +G S+GFGFV ++  +    A    
Sbjct: 210 VYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDAIDSL 269

Query: 269 NGVELQGKRLAV 304
           NG++L G+ + V
Sbjct: 270 NGIDLDGRSIRV 281



to top

>RBM3_MOUSE (O89086) Putative RNA-binding protein 3 (RNA-binding motif protein|
           3)
          Length = 153

 Score = 51.6 bits (122), Expect = 1e-06
 Identities = 29/74 (39%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
 Frame = +2

Query: 89  EVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGV-SKGFGFVRFAERECAYIAKRQ 265
           ++FVGGL  +  E  L + FS+ G I ++ ++KD+    S+GFGF+ F   E A  A R 
Sbjct: 7   KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRA 66

Query: 266 KNGVELQGKRLAVD 307
            NG  L G+++ VD
Sbjct: 67  MNGESLDGRQIRVD 80



to top

>ROC2_NICSY (Q08937) 29 kDa ribonucleoprotein B, chloroplast precursor (CP29B)|
          Length = 291

 Score = 51.6 bits (122), Expect = 1e-06
 Identities = 28/83 (33%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
 Frame = +2

Query: 62  EQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQ-NGVSKGFGFVRFAER 238
           EQ R  +  ++FVG LP S     L  +F   G +  + ++ D+  G S+GFGFV  + +
Sbjct: 79  EQPRFSEDLKLFVGNLPFSVDSAALAGLFERAGNVEMVEVIYDKLTGRSRGFGFVTMSTK 138

Query: 239 ECAYIAKRQKNGVELQGKRLAVD 307
           E    A++Q NG E+ G+ + V+
Sbjct: 139 EEVEAAEQQFNGYEIDGRAIRVN 161



 Score = 48.1 bits (113), Expect = 1e-05
 Identities = 26/72 (36%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
 Frame = +2

Query: 92  VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQN-GVSKGFGFVRFAERECAYIAKRQK 268
           V+VG L     +  L+E+FS  G +VD +++ D++ G S+GFGFV ++  +    A    
Sbjct: 209 VYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVNDAIDSL 268

Query: 269 NGVELQGKRLAV 304
           NGV+L G+ + V
Sbjct: 269 NGVDLDGRSIRV 280



to top

>EPABA_XENLA (Q98SP8) Embryonic polyadenylate-binding protein-A (Embryonic|
           poly(A) binding protein-A) (ePABP-A) (ePAB-A) (XePABP-A)
          Length = 629

 Score = 51.6 bits (122), Expect = 1e-06
 Identities = 25/71 (35%), Positives = 39/71 (54%)
 Frame = +2

Query: 92  VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKRQKN 271
           V++        +  LREIFS  G  + +++M D +G S+GFGFV +   E A  A  + N
Sbjct: 193 VYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDSGRSRGFGFVNYGNHEEAQKAVSEMN 252

Query: 272 GVELQGKRLAV 304
           G E+ G+ + V
Sbjct: 253 GKEVNGRMIYV 263



 Score = 43.1 bits (100), Expect = 4e-04
 Identities = 24/71 (33%), Positives = 39/71 (54%)
 Frame = +2

Query: 92  VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKRQKN 271
           VF+  L  S     L + FS  G I+  +++ D++G S+G+GFV F   E A  A +  N
Sbjct: 101 VFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHG-SRGYGFVHFETHEAANRAIQTMN 159

Query: 272 GVELQGKRLAV 304
           G+ L  +++ V
Sbjct: 160 GMLLNDRKVFV 170



 Score = 41.2 bits (95), Expect = 0.001
 Identities = 29/84 (34%), Positives = 42/84 (50%)
 Frame = +2

Query: 62  EQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERE 241
           E+  R +G  ++V  L     +  LR+ F   G I   ++M +  G SKGFGFV F+  E
Sbjct: 286 ERINRYQGVNLYVKNLDDGIDDDRLRKEFLPYGTITSAKVMTE-GGHSKGFGFVCFSSPE 344

Query: 242 CAYIAKRQKNGVELQGKRLAVDLS 313
            A  A  + NG  +  K L V L+
Sbjct: 345 EATKAVTEMNGRIVSTKPLYVALA 368



to top

>YP85_CAEEL (Q09442) Putative RNA-binding protein C08B11.5|
          Length = 388

 Score = 51.6 bits (122), Expect = 1e-06
 Identities = 43/138 (31%), Positives = 67/138 (48%), Gaps = 10/138 (7%)
 Frame = +2

Query: 74  RVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQ-NGVSKGFGFVRFAERECAY 250
           R + A ++VGGL    +E  L E+    G +V + + KD+     +GFGFV F   E A 
Sbjct: 9   RNQDATIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDAD 68

Query: 251 IAKRQKNGVELQGKRLAVDLSLDQD-------TLFFGNLCKEWSAEEFEELIHKTFK--D 403
            A +  N ++L GK + V+ +   +        +F GNL      E  E+L++ TF    
Sbjct: 69  YAIKILNMIKLYGKPIKVNKASAHEKNMDVGANIFVGNL----DPEVDEKLLYDTFSAFG 124

Query: 404 VISVDLAMAPNLDSSTSK 457
           VI     +  ++DS TSK
Sbjct: 125 VILQVPKIMRDVDSGTSK 142



 Score = 48.9 bits (115), Expect = 6e-06
 Identities = 30/84 (35%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
 Frame = +2

Query: 83  GAEVFVGGLPRSATEGTLREIFSTCGEIVDL-RIMKD-QNGVSKGFGFVRFAERECAYIA 256
           GA +FVG L     E  L + FS  G I+ + +IM+D  +G SKGF F+ FA  E +  A
Sbjct: 99  GANIFVGNLDPEVDEKLLYDTFSAFGVILQVPKIMRDVDSGTSKGFAFINFASFEASDTA 158

Query: 257 KRQKNGVELQGKRLAVDLSLDQDT 328
               NG  L  + + V  +  +D+
Sbjct: 159 LEAMNGQFLCNRAITVSYAFKRDS 182



to top

>RBY1A_HUMAN (Q15414) RNA-binding motif protein, Y chromosome, family 1 member|
           A1 (RNA-binding motif protein 1)
          Length = 496

 Score = 51.6 bits (122), Expect = 1e-06
 Identities = 25/73 (34%), Positives = 40/73 (54%)
 Frame = +2

Query: 89  EVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKRQK 268
           ++F+GGL R   E  L+ +F   G I ++ ++KD+   S+GF F+ F     A  A +  
Sbjct: 9   KLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDM 68

Query: 269 NGVELQGKRLAVD 307
           NG  L GK + V+
Sbjct: 69  NGKSLHGKAIKVE 81



to top

>RNPC1_HUMAN (Q9H0Z9) RNA-binding region-containing protein 1 (HSRNASEB) (ssDNA|
           binding protein SEB4) (CLL-associated antigen KW-5)
          Length = 216

 Score = 51.6 bits (122), Expect = 1e-06
 Identities = 28/76 (36%), Positives = 47/76 (61%), Gaps = 1/76 (1%)
 Frame = +2

Query: 89  EVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKD-QNGVSKGFGFVRFAERECAYIAKRQ 265
           ++FVGGLP   T+ +LR+ F   G+I +  ++ D Q G S+G+GFV  A+R  A  A + 
Sbjct: 12  KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71

Query: 266 KNGVELQGKRLAVDLS 313
            N + + G++  V+L+
Sbjct: 72  PNPI-IDGRKANVNLA 86



to top

>RNPC1_MOUSE (Q62176) RNA-binding region-containing protein 1 (ssDNA binding|
           protein SEB4)
          Length = 237

 Score = 51.2 bits (121), Expect = 1e-06
 Identities = 28/76 (36%), Positives = 47/76 (61%), Gaps = 1/76 (1%)
 Frame = +2

Query: 89  EVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKD-QNGVSKGFGFVRFAERECAYIAKRQ 265
           ++FVGGLP   T+ +LR+ F   G+I +  ++ D Q G S+G+GFV  A+R  A  A + 
Sbjct: 33  KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAADRACKD 92

Query: 266 KNGVELQGKRLAVDLS 313
            N + + G++  V+L+
Sbjct: 93  PNPI-IDGRKANVNLA 107



to top

>EPAB_XENTR (Q6DEY7) Embryonic polyadenylate-binding protein (Embryonic poly(A)|
           binding protein) (ePABP)
          Length = 629

 Score = 51.2 bits (121), Expect = 1e-06
 Identities = 25/71 (35%), Positives = 38/71 (53%)
 Frame = +2

Query: 92  VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKRQKN 271
           V++        +  LREIFS  G  + +++M D  G S+GFGFV +   E A  A  + N
Sbjct: 193 VYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDTGRSRGFGFVNYGNHEEAQKAVSEMN 252

Query: 272 GVELQGKRLAV 304
           G E+ G+ + V
Sbjct: 253 GKEVNGRMIYV 263



 Score = 43.5 bits (101), Expect = 3e-04
 Identities = 30/84 (35%), Positives = 43/84 (51%)
 Frame = +2

Query: 62  EQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERE 241
           E+  R +G  ++V  L     +  LR+ FS  G I   ++M +  G SKGFGFV F+  E
Sbjct: 286 ERINRYQGVNLYVKNLDDGIDDDRLRKEFSPYGTITSAKVMTE-GGHSKGFGFVCFSSPE 344

Query: 242 CAYIAKRQKNGVELQGKRLAVDLS 313
            A  A  + NG  +  K L V L+
Sbjct: 345 EATKAVTEMNGRIVSTKPLYVALA 368



 Score = 43.5 bits (101), Expect = 3e-04
 Identities = 24/71 (33%), Positives = 40/71 (56%)
 Frame = +2

Query: 92  VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKRQKN 271
           VF+  L  S     L + FS  G I+  +++ D++G S+G+GFV F  +E A  A +  N
Sbjct: 101 VFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHG-SRGYGFVHFETQEAANRAIQTMN 159

Query: 272 GVELQGKRLAV 304
           G+ L  +++ V
Sbjct: 160 GMLLNDRKVFV 170



to top

>HNRPM_HUMAN (P52272) Heterogeneous nuclear ribonucleoprotein M (hnRNP M)|
          Length = 729

 Score = 50.8 bits (120), Expect = 2e-06
 Identities = 30/82 (36%), Positives = 47/82 (57%)
 Frame = +2

Query: 80  KGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAK 259
           K  ++FV  LP   T   L++ F+ CG ++   I K +NG SKG G V+F   E A  A 
Sbjct: 650 KACQIFVRNLPFDFTWKMLKDKFNECGHVLYADI-KMENGKSKGCGVVKFESPEVAERAC 708

Query: 260 RQKNGVELQGKRLAVDLSLDQD 325
           R  NG++L G+   +D+ +D++
Sbjct: 709 RMMNGMKLSGRE--IDVRIDRN 728



 Score = 38.5 bits (88), Expect = 0.009
 Identities = 23/64 (35%), Positives = 33/64 (51%)
 Frame = +2

Query: 83  GAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKR 262
           G+ VFV  L        L+E+FS  G +V   I++D++G S+G G V F +   A  A  
Sbjct: 202 GSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAIS 261

Query: 263 QKNG 274
             NG
Sbjct: 262 MFNG 265



to top

>PABPA_XENLA (P20965) Polyadenylate-binding protein 1-A (Poly(A)-binding protein|
           1-A) (Cytoplasmic poly(A)-binding protein 1-A) (PABP-A)
           (PABP 1-A) (xPABP1-A)
          Length = 633

 Score = 50.8 bits (120), Expect = 2e-06
 Identities = 25/71 (35%), Positives = 38/71 (53%)
 Frame = +2

Query: 92  VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKRQKN 271
           V++        +  L+E+F   G  + +++M D NG SKGFGFV F   E A  A  + N
Sbjct: 193 VYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDDNGKSKGFGFVSFERHEDAQKAVDEMN 252

Query: 272 GVELQGKRLAV 304
           G ++ GK + V
Sbjct: 253 GKDMNGKSMFV 263



 Score = 47.0 bits (110), Expect = 2e-05
 Identities = 27/82 (32%), Positives = 44/82 (53%)
 Frame = +2

Query: 59  DEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAER 238
           D   R+     +F+  L +S     L + FS  G I+  +++ D+NG SKG+GFV F  +
Sbjct: 90  DPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQ 148

Query: 239 ECAYIAKRQKNGVELQGKRLAV 304
           E A  A  + NG+ L  +++ V
Sbjct: 149 EAAERAIDKMNGMLLNDRKVFV 170



 Score = 41.2 bits (95), Expect = 0.001
 Identities = 33/103 (32%), Positives = 52/103 (50%), Gaps = 4/103 (3%)
 Frame = +2

Query: 17  EPKMDRRAASHGDYDE--QDR--RVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIM 184
           + K++R+      +++  QDR  R +G  ++V  L     +  LR+ F   G I   ++M
Sbjct: 267 QKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFLPFGTITSAKVM 326

Query: 185 KDQNGVSKGFGFVRFAERECAYIAKRQKNGVELQGKRLAVDLS 313
            +  G SKGFGFV F+  E A  A  + NG  +  K L V L+
Sbjct: 327 ME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368



to top

>HNRPM_MOUSE (Q9D0E1) Heterogeneous nuclear ribonucleoprotein M (hnRNP M)|
          Length = 728

 Score = 50.8 bits (120), Expect = 2e-06
 Identities = 30/82 (36%), Positives = 47/82 (57%)
 Frame = +2

Query: 80  KGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAK 259
           K  ++FV  LP   T   L++ F+ CG ++   I K +NG SKG G V+F   E A  A 
Sbjct: 649 KACQIFVRNLPFDFTWKMLKDKFNECGHVLYADI-KMENGKSKGCGVVKFESPEVAERAC 707

Query: 260 RQKNGVELQGKRLAVDLSLDQD 325
           R  NG++L G+   +D+ +D++
Sbjct: 708 RMMNGMKLSGRE--IDVRIDRN 727



 Score = 39.3 bits (90), Expect = 0.005
 Identities = 23/64 (35%), Positives = 33/64 (51%)
 Frame = +2

Query: 83  GAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKR 262
           G+ VFV  L        L+E+FS  G +V   I++D++G S+G G V F +   A  A  
Sbjct: 201 GSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGIVTFEQSIEAVQAIS 260

Query: 263 QKNG 274
             NG
Sbjct: 261 MFNG 264



to top

>MRD1_YEAST (Q06106) Multiple RNA-binding domain-containing protein 1|
          Length = 887

 Score = 50.8 bits (120), Expect = 2e-06
 Identities = 37/138 (26%), Positives = 65/138 (47%)
 Frame = +2

Query: 23   KMDRRAASHGDYDEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGV 202
            K+  R AS     +     K  ++ V  LP  AT   + E+F++ G++  +R+ K  +  
Sbjct: 742  KLSHRQASQSGNTKTKSNKKSGKIIVKNLPFEATRKDVFELFNSFGQLKSVRVPKKFDKS 801

Query: 203  SKGFGFVRFAERECAYIAKRQKNGVELQGKRLAVDLSLDQDTLFFGNLCKEWSAEEFEEL 382
            ++GF FV F   + A  A  Q +GV L G+RL +  + ++D +         + EE   +
Sbjct: 802  ARGFAFVEFLLPKEAENAMDQLHGVHLLGRRLVMQYA-EEDAVD--------AEEEIARM 852

Query: 383  IHKTFKDVISVDLAMAPN 436
              K  K V + ++A   N
Sbjct: 853  TKKVRKQVATNEMAALRN 870



 Score = 40.4 bits (93), Expect = 0.002
 Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 15/91 (16%)
 Frame = +2

Query: 86  AEVFVGGLPRSATEGTLREIF---------------STCGEIVDLRIMKDQNGVSKGFGF 220
           + + V GLP   T+  LRE F               S    I D++I++D+NG S+ FGF
Sbjct: 2   SRIIVKGLPVYLTDDNLREHFTKRLRQKHSHQAVNGSGPDLITDVKILRDRNGESRRFGF 61

Query: 221 VRFAERECAYIAKRQKNGVELQGKRLAVDLS 313
           + +   E A+ A    NG  +   ++ V ++
Sbjct: 62  IGYRNEEDAFDAVEYFNGSFINTSKIEVSMA 92



 Score = 32.7 bits (73), Expect = 0.48
 Identities = 20/72 (27%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
 Frame = +2

Query: 92  VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKD-QNGVSKGFGFVRFAERECAYIAKRQK 268
           +F+  +  ++ E   R++FS  GE+ ++ +  D + G SKGF +V F + + A  A  + 
Sbjct: 347 LFLRNILYTSKEEDFRKLFSPFGELEEVHVALDTRTGQSKGFAYVLFKDSKNAVNAYVEL 406

Query: 269 NGVELQGKRLAV 304
           +    QG+ L +
Sbjct: 407 DKQIFQGRLLHI 418



to top

>HNRPG_HUMAN (P38159) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)|
           (RNA-binding motif protein, X chromosome) (Glycoprotein
           p43)
          Length = 391

 Score = 50.8 bits (120), Expect = 2e-06
 Identities = 28/74 (37%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
 Frame = +2

Query: 89  EVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKD-QNGVSKGFGFVRFAERECAYIAKRQ 265
           ++F+GGL     E  L  +F   G IV++ +MKD +   S+GF FV F     A  A R 
Sbjct: 9   KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 68

Query: 266 KNGVELQGKRLAVD 307
            NG  L GK + V+
Sbjct: 69  MNGKSLDGKAIKVE 82



to top

>HNRPM_RAT (Q62826) Heterogeneous nuclear ribonucleoprotein M (hnRNP M) (M4|
           protein)
          Length = 689

 Score = 50.8 bits (120), Expect = 2e-06
 Identities = 30/82 (36%), Positives = 47/82 (57%)
 Frame = +2

Query: 80  KGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAK 259
           K  ++FV  LP   T   L++ F+ CG ++   I K +NG SKG G V+F   E A  A 
Sbjct: 610 KACQIFVRNLPFDFTWKMLKDKFNECGHVLYADI-KMENGKSKGCGVVKFESPEVAERAC 668

Query: 260 RQKNGVELQGKRLAVDLSLDQD 325
           R  NG++L G+   +D+ +D++
Sbjct: 669 RMMNGMKLSGRE--IDVRIDRN 688



 Score = 38.5 bits (88), Expect = 0.009
 Identities = 23/64 (35%), Positives = 33/64 (51%)
 Frame = +2

Query: 83  GAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKR 262
           G+ VFV  L        L+E+FS  G +V   I++D++G S+G G V F +   A  A  
Sbjct: 162 GSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAIS 221

Query: 263 QKNG 274
             NG
Sbjct: 222 MFNG 225



to top

>ELAV3_MOUSE (Q60900) ELAV-like protein 3 (Hu-antigen C) (HuC)|
          Length = 367

 Score = 50.8 bits (120), Expect = 2e-06
 Identities = 26/67 (38%), Positives = 43/67 (64%), Gaps = 1/67 (1%)
 Frame = +2

Query: 77  VKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQ-NGVSKGFGFVRFAERECAYI 253
           ++ A ++V GLP++ ++  + ++FS  G I+  RI+ DQ  GVS+G GF+RF +R  A  
Sbjct: 122 IRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEE 181

Query: 254 AKRQKNG 274
           A +  NG
Sbjct: 182 AIKGLNG 188



 Score = 47.8 bits (112), Expect = 1e-05
 Identities = 30/104 (28%), Positives = 54/104 (51%), Gaps = 7/104 (6%)
 Frame = +2

Query: 92  VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQ-NGVSKGFGFVRFAERECAYIAKRQK 268
           + V  LP++ T+   + +F + G+I   ++++D+  G S G+GFV +++   A  A    
Sbjct: 41  LIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTL 100

Query: 269 NGVELQGKRLAV------DLSLDQDTLFFGNLCKEWSAEEFEEL 382
           NG++LQ K + V        S+    L+   L K  S +E E+L
Sbjct: 101 NGLKLQTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQL 144



 Score = 35.8 bits (81), Expect = 0.057
 Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
 Frame = +2

Query: 92  VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKD-QNGVSKGFGFVRFAERECAYIAKRQK 268
           +FV  L   A E  L ++F   G + ++++++D      KGFGFV     + A +A    
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345

Query: 269 NGVELQGKRLAV 304
           NG  L  + L V
Sbjct: 346 NGYRLGERVLQV 357



to top

>ELAV3_HUMAN (Q14576) ELAV-like protein 3 (Hu-antigen C) (HuC) (Paraneoplastic|
           cerebellar degeneration-associated antigen)
           (Paraneoplastic limbic encephalitis antigen 21)
          Length = 367

 Score = 50.8 bits (120), Expect = 2e-06
 Identities = 26/67 (38%), Positives = 43/67 (64%), Gaps = 1/67 (1%)
 Frame = +2

Query: 77  VKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQ-NGVSKGFGFVRFAERECAYI 253
           ++ A ++V GLP++ ++  + ++FS  G I+  RI+ DQ  GVS+G GF+RF +R  A  
Sbjct: 122 IRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEE 181

Query: 254 AKRQKNG 274
           A +  NG
Sbjct: 182 AIKGLNG 188



 Score = 47.8 bits (112), Expect = 1e-05
 Identities = 30/104 (28%), Positives = 54/104 (51%), Gaps = 7/104 (6%)
 Frame = +2

Query: 92  VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQ-NGVSKGFGFVRFAERECAYIAKRQK 268
           + V  LP++ T+   + +F + G+I   ++++D+  G S G+GFV +++   A  A    
Sbjct: 41  LIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTL 100

Query: 269 NGVELQGKRLAV------DLSLDQDTLFFGNLCKEWSAEEFEEL 382
           NG++LQ K + V        S+    L+   L K  S +E E+L
Sbjct: 101 NGLKLQTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQL 144



 Score = 35.8 bits (81), Expect = 0.057
 Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
 Frame = +2

Query: 92  VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKD-QNGVSKGFGFVRFAERECAYIAKRQK 268
           +FV  L   A E  L ++F   G + ++++++D      KGFGFV     + A +A    
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345

Query: 269 NGVELQGKRLAV 304
           NG  L  + L V
Sbjct: 346 NGYRLGERVLQV 357



to top

>MRD1_CANAL (Q5AJS6) Multiple RNA-binding domain-containing protein 1|
          Length = 841

 Score = 50.8 bits (120), Expect = 2e-06
 Identities = 36/117 (30%), Positives = 57/117 (48%)
 Frame = +2

Query: 80   KGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAK 259
            K +++ +  LP  AT   L E+F   G++  +R+ K  +  ++GF FV F   + A  A 
Sbjct: 715  KSSKIIIKNLPFEATRKDLLELFGAFGQLKSVRVPKKFDQSARGFAFVEFNLMKEAETAM 774

Query: 260  RQKNGVELQGKRLAVDLSLDQDTLFFGNLCKEWSAEEFEELIHKTFKDVISVDLAMA 430
             Q  GV L G+RL +  + +QD         E +  E E +  K  K V + +LA A
Sbjct: 775  SQLEGVHLLGRRLVMQYA-EQD--------PENAEVEIERMTKKVKKQVATQNLAAA 822



 Score = 50.1 bits (118), Expect = 3e-06
 Identities = 25/76 (32%), Positives = 43/76 (56%)
 Frame = +2

Query: 86  AEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKRQ 265
           + + V GLP+  TE  LRE FS  G++ D+++MK +NG S+ F F+ +   + A  A + 
Sbjct: 2   SRLIVKGLPKYYTEEKLREFFSKQGDVTDVKLMKKRNGESRKFAFIGYKSADAAERAVKY 61

Query: 266 KNGVELQGKRLAVDLS 313
            N   +   R+ V+ +
Sbjct: 62  FNKSFIDTARIEVEFA 77



 Score = 37.0 bits (84), Expect = 0.025
 Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
 Frame = +2

Query: 92  VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKD-QNGVSKGFGFVRFAERECAYIAKRQK 268
           +F+  +   A+E   R +FS  G + ++ I  D + G SKGF +V+F ++E A  A R  
Sbjct: 312 LFIRNISYEASEEDFRSLFSQYGALEEVHIAIDTRTGKSKGFLYVQFLKKEDATRAYRSL 371

Query: 269 NGVELQGKRLAV 304
           +    QG+ L +
Sbjct: 372 DKQIFQGRLLHI 383



to top

>ELAV1_HUMAN (Q15717) ELAV-like protein 1 (Hu-antigen R) (HuR)|
          Length = 326

 Score = 50.8 bits (120), Expect = 2e-06
 Identities = 25/67 (37%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
 Frame = +2

Query: 77  VKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQN-GVSKGFGFVRFAERECAYI 253
           +K A +++ GLPR+ T+  + ++FS  G I++ R++ DQ  G+S+G  F+RF +R  A  
Sbjct: 103 IKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEE 162

Query: 254 AKRQKNG 274
           A    NG
Sbjct: 163 AITSFNG 169



 Score = 47.0 bits (110), Expect = 2e-05
 Identities = 28/107 (26%), Positives = 55/107 (51%), Gaps = 7/107 (6%)
 Frame = +2

Query: 92  VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQ-NGVSKGFGFVRFAERECAYIAKRQK 268
           + V  LP++ T+  LR +FS+ GE+   ++++D+  G S G+GFV +   + A  A    
Sbjct: 22  LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTL 81

Query: 269 NGVELQGKRLAVDLS------LDQDTLFFGNLCKEWSAEEFEELIHK 391
           NG+ LQ K + V  +      +    L+   L +  + ++ E++  +
Sbjct: 82  NGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRTMTQKDVEDMFSR 128



 Score = 42.4 bits (98), Expect = 6e-04
 Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
 Frame = +2

Query: 92  VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQN-GVSKGFGFVRFAERECAYIAKRQK 268
           +F+  L + A EG L ++F   G + ++++++D N    KGFGFV     E A +A    
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305

Query: 269 NGVELQGKRLAVDLSLDQ 322
           NG  L  K L V    ++
Sbjct: 306 NGYRLGDKILQVSFKTNK 323



to top

>ROAA_HUMAN (Q99729) Heterogeneous nuclear ribonucleoprotein A/B (hnRNP A/B)|
           (APOBEC-1-binding protein 1) (ABBP-1)
          Length = 331

 Score = 50.8 bits (120), Expect = 2e-06
 Identities = 39/146 (26%), Positives = 62/146 (42%), Gaps = 5/146 (3%)
 Frame = +2

Query: 20  PKMDRRAASHGDYDEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQN- 196
           P+   R A     +         ++FVGGL    ++  L++ F+  GE+VD  I  D N 
Sbjct: 46  PRAGIRTAPRDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNT 105

Query: 197 GVSKGFGFVRFAERECAYIAKRQK----NGVELQGKRLAVDLSLDQDTLFFGNLCKEWSA 364
           G S+GFGF+ F +         QK    +G  +  K+           +F G L  E   
Sbjct: 106 GRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKAMAMKKDPVKKIFVGGLNPESPT 165

Query: 365 EEFEELIHKTFKDVISVDLAMAPNLD 442
           EE        F ++ +++L M P L+
Sbjct: 166 EEKIREYFGEFGEIEAIELPMDPKLN 191



to top

>ROC3_ARATH (Q04836) 31 kDa ribonucleoprotein, chloroplast precursor|
           (RNA-binding protein RNP-T) (RNA-binding protein 1/2/3)
           (AtRBP33) (RNA-binding protein cp31)
          Length = 329

 Score = 50.4 bits (119), Expect = 2e-06
 Identities = 31/96 (32%), Positives = 53/96 (55%), Gaps = 3/96 (3%)
 Frame = +2

Query: 35  RAASHGDYDEQDRRV--KGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKD-QNGVS 205
           +AA  G   E+  RV      V+VG LP     G L ++FS  G++V+ R++ D + G S
Sbjct: 225 KAAPRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRS 284

Query: 206 KGFGFVRFAERECAYIAKRQKNGVELQGKRLAVDLS 313
           +GFGFV  ++ +    A    +G  L+G+ + V+++
Sbjct: 285 RGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVA 320



 Score = 37.0 bits (84), Expect = 0.025
 Identities = 29/102 (28%), Positives = 47/102 (46%), Gaps = 2/102 (1%)
 Frame = +2

Query: 8   EGEEPKMDRRAASHGDYDEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCG--EIVDLRI 181
           EG+E + D    +  +  E     + A++FVG L        L  +F   G  EI ++ I
Sbjct: 124 EGDESEGDVSEGAVSERAEFPEPSEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEV-I 182

Query: 182 MKDQNGVSKGFGFVRFAERECAYIAKRQKNGVELQGKRLAVD 307
              +   S+GFGFV  +  + A  A  + N  +L G+ L V+
Sbjct: 183 YNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVN 224



to top

>SXL_MEGSC (O01671) Sex-lethal homolog|
          Length = 321

 Score = 50.4 bits (119), Expect = 2e-06
 Identities = 34/110 (30%), Positives = 51/110 (46%), Gaps = 7/110 (6%)
 Frame = +2

Query: 83  GAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKD-QNGVSKGFGFVRFAERECAYIAK 259
           G  + V  LP+   +  L  +F T G I   RIM+D + G S G+GFV F     A  A 
Sbjct: 77  GTNLIVNYLPQDMQDRELYSLFRTIGPINTCRIMRDYKTGYSYGYGFVDFGSEADALRAI 136

Query: 260 RQKNGVELQGKRLAVDLS------LDQDTLFFGNLCKEWSAEEFEELIHK 391
              NG+ ++ KR+ V  +      L    L+  NL +  + E+ E +  K
Sbjct: 137 NNLNGITVRNKRIKVSFARPGGEQLRDTNLYVTNLSRSITDEQLETIFGK 186



to top

>GRP1_SINAL (P49310) Glycine-rich RNA-binding protein GRP1A|
          Length = 166

 Score = 50.1 bits (118), Expect = 3e-06
 Identities = 27/72 (37%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
 Frame = +2

Query: 95  FVGGLPRSATEGTLREIFSTCGEIVDLRIMKD-QNGVSKGFGFVRFAERECAYIAKRQKN 271
           FVGGL  +  +  L   FS  GE++D +I+ D + G S+GFGFV F + +    A    N
Sbjct: 11  FVGGLAWATDDRALETAFSQYGEVLDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEGMN 70

Query: 272 GVELQGKRLAVD 307
           G +L G+ + V+
Sbjct: 71  GQDLDGRSITVN 82



to top

>EPABB_XENLA (Q6GR16) Embryonic polyadenylate-binding protein-B (Embryonic|
           poly(A) binding protein-B) (ePABP-B) (ePAB-B) (XePABP-B)
          Length = 629

 Score = 50.1 bits (118), Expect = 3e-06
 Identities = 24/71 (33%), Positives = 39/71 (54%)
 Frame = +2

Query: 92  VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKRQKN 271
           V++        +  L+EIFS  G  + +++M D +G S+GFGFV +   E A  A  + N
Sbjct: 193 VYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMDNSGRSRGFGFVNYGNHEEAQKAVTEMN 252

Query: 272 GVELQGKRLAV 304
           G E+ G+ + V
Sbjct: 253 GKEVNGRMVYV 263



 Score = 43.5 bits (101), Expect = 3e-04
 Identities = 30/84 (35%), Positives = 43/84 (51%)
 Frame = +2

Query: 62  EQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERE 241
           E+  R +G  ++V  L     +  LR+ FS  G I   ++M +  G SKGFGFV F+  E
Sbjct: 286 ERINRYQGVNLYVKNLDDGIDDDRLRKEFSPYGTITSTKVMTE-GGHSKGFGFVCFSSPE 344

Query: 242 CAYIAKRQKNGVELQGKRLAVDLS 313
            A  A  + NG  +  K L V L+
Sbjct: 345 EATKAVTEMNGRIVSTKPLYVALA 368



 Score = 42.4 bits (98), Expect = 6e-04
 Identities = 24/71 (33%), Positives = 40/71 (56%)
 Frame = +2

Query: 92  VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKRQKN 271
           VF+  L  S     L + FS  G+I+  +++ D+ G S+G+GFV F  +E A  A +  N
Sbjct: 101 VFIKNLDDSIDNKALYDTFSAFGDILSCKVVCDEYG-SRGYGFVHFETQEAANRAIQTMN 159

Query: 272 GVELQGKRLAV 304
           G+ L  +++ V
Sbjct: 160 GMLLNDRKVFV 170



to top

>ROA0_HUMAN (Q13151) Heterogeneous nuclear ribonucleoprotein A0 (hnRNP A0)|
          Length = 305

 Score = 50.1 bits (118), Expect = 3e-06
 Identities = 35/104 (33%), Positives = 51/104 (49%), Gaps = 1/104 (0%)
 Frame = +2

Query: 32  RRAASHGDYDEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKD-QNGVSK 208
           +RA S  D        K  ++FVGGL     EG L E FS  G +    I+ D Q+G  +
Sbjct: 80  KRAVSREDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKR 139

Query: 209 GFGFVRFAERECAYIAKRQKNGVELQGKRLAVDLSLDQDTLFFG 340
           GFGFV F   + A  A   K    +QG R+ V  ++ ++ ++ G
Sbjct: 140 GFGFVYFQNHDAADKAAVVKFH-PIQGHRVEVKKAVPKEDIYSG 182



to top

>CIRBP_PONPY (Q5RF83) Cold-inducible RNA-binding protein (Glycine-rich|
           RNA-binding protein CIRP)
          Length = 172

 Score = 50.1 bits (118), Expect = 3e-06
 Identities = 27/74 (36%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
 Frame = +2

Query: 89  EVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKD-QNGVSKGFGFVRFAERECAYIAKRQ 265
           ++FVGGL     E +L ++FS  G+I ++ ++KD +   S+GFGFV F   + A  A   
Sbjct: 7   KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66

Query: 266 KNGVELQGKRLAVD 307
            NG  + G+++ VD
Sbjct: 67  MNGKSVDGRQIRVD 80



to top

>CIRBP_HUMAN (Q14011) Cold-inducible RNA-binding protein (Glycine-rich|
           RNA-binding protein CIRP) (A18 hnRNP)
          Length = 172

 Score = 50.1 bits (118), Expect = 3e-06
 Identities = 27/74 (36%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
 Frame = +2

Query: 89  EVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKD-QNGVSKGFGFVRFAERECAYIAKRQ 265
           ++FVGGL     E +L ++FS  G+I ++ ++KD +   S+GFGFV F   + A  A   
Sbjct: 7   KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66

Query: 266 KNGVELQGKRLAVD 307
            NG  + G+++ VD
Sbjct: 67  MNGKSVDGRQIRVD 80



to top

>DAZL_CHICK (Q804A9) Deleted in azoospermia-like (DAZ-like protein)|
          Length = 289

 Score = 50.1 bits (118), Expect = 3e-06
 Identities = 28/86 (32%), Positives = 47/86 (54%)
 Frame = +2

Query: 92  VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKRQKN 271
           VFVGG+     E  +R  F   G + +++I+ D+ GVSKG+GFV F +     + K  ++
Sbjct: 38  VFVGGIDIRMNEAEIRSYFEQYGTVKEVKIITDRTGVSKGYGFVSFLDN--VDVQKIVES 95

Query: 272 GVELQGKRLAVDLSLDQDTLFFGNLC 349
            + + GKRL +  ++ +      NLC
Sbjct: 96  QISVHGKRLKLGPAIRKQQ----NLC 117



to top

>ROC1_NICPL (P49313) 30 kDa ribonucleoprotein, chloroplast precursor (CP-RBP30)|
          Length = 279

 Score = 50.1 bits (118), Expect = 3e-06
 Identities = 28/74 (37%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
 Frame = +2

Query: 89  EVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQ-NGVSKGFGFVRFAERECAYIAKRQ 265
           ++FVG L  SA    L E+F   G +  + ++ D+  G S+GFGFV  + +E    A +Q
Sbjct: 88  KIFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQ 147

Query: 266 KNGVELQGKRLAVD 307
            NG EL G+ L V+
Sbjct: 148 FNGYELDGRALRVN 161



 Score = 48.5 bits (114), Expect = 8e-06
 Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
 Frame = +2

Query: 50  GDYDEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQN-GVSKGFGFVR 226
           G +D  +R      V+VG L     +  L  +FS  G++VD +++ D++ G S+GFGFV 
Sbjct: 188 GSFDSSNR------VYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVT 241

Query: 227 FAERECAYIAKRQKNGVELQGKRLAV 304
           ++  E    A    +GV+L G+ + V
Sbjct: 242 YSSAEEVNNAIESLDGVDLNGRAIRV 267



to top

>DAZ1_CAEEL (Q20870) DAZ protein 1|
          Length = 499

 Score = 49.7 bits (117), Expect = 4e-06
 Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
 Frame = +2

Query: 92  VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRF-AERECAYIAKRQK 268
           +FVGG P S TE  LRE F     + D++++K  +G SKG+GF+ F  E +   I K   
Sbjct: 69  IFVGGFPTSTTETELREHFEKFFAVKDVKMVKSLDGQSKGYGFITFETEDQAEEIRKLTP 128

Query: 269 NGVELQGKRL 298
             +E + ++L
Sbjct: 129 KQLEFRSRKL 138



to top

>BOULE_DROME (Q24207) Protein boule|
          Length = 228

 Score = 49.7 bits (117), Expect = 4e-06
 Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 10/70 (14%)
 Frame = +2

Query: 92  VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRF----------AERE 241
           +FVGG+    TE  L  +FS  G +   +I+ D+ GVSKG+GFV F          A+ E
Sbjct: 35  IFVGGISGDTTEADLTRVFSAYGTVKSTKIIVDRAGVSKGYGFVTFETEQEAQRLQADGE 94

Query: 242 CAYIAKRQKN 271
           C  +  R+ N
Sbjct: 95  CVVLRDRKLN 104



to top

>CIRBP_RAT (P60825) Cold-inducible RNA-binding protein (Glycine-rich|
           RNA-binding protein CIRP) (A18 hnRNP)
          Length = 172

 Score = 49.7 bits (117), Expect = 4e-06
 Identities = 27/74 (36%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
 Frame = +2

Query: 89  EVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKD-QNGVSKGFGFVRFAERECAYIAKRQ 265
           ++FVGGL     E  L ++FS  G+I ++ ++KD +   S+GFGFV F   + A  A   
Sbjct: 7   KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66

Query: 266 KNGVELQGKRLAVD 307
            NG  + G+++ VD
Sbjct: 67  MNGKSVDGRQIRVD 80



to top

>CIRBP_MOUSE (P60824) Cold-inducible RNA-binding protein (Glycine-rich|
           RNA-binding protein CIRP) (A18 hnRNP)
          Length = 172

 Score = 49.7 bits (117), Expect = 4e-06
 Identities = 27/74 (36%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
 Frame = +2

Query: 89  EVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKD-QNGVSKGFGFVRFAERECAYIAKRQ 265
           ++FVGGL     E  L ++FS  G+I ++ ++KD +   S+GFGFV F   + A  A   
Sbjct: 7   KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66

Query: 266 KNGVELQGKRLAVD 307
            NG  + G+++ VD
Sbjct: 67  MNGKSVDGRQIRVD 80



to top

>CIRBP_CRIGR (P60826) Cold-inducible RNA-binding protein (Glycine-rich|
           RNA-binding protein CIRP) (A18 hnRNP)
          Length = 172

 Score = 49.7 bits (117), Expect = 4e-06
 Identities = 27/74 (36%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
 Frame = +2

Query: 89  EVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKD-QNGVSKGFGFVRFAERECAYIAKRQ 265
           ++FVGGL     E  L ++FS  G+I ++ ++KD +   S+GFGFV F   + A  A   
Sbjct: 7   KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66

Query: 266 KNGVELQGKRLAVD 307
            NG  + G+++ VD
Sbjct: 67  MNGKSVDGRQIRVD 80



to top

>RB27C_DROME (P48809) Heterogeneous nuclear ribonucleoprotein 27C (Hrb27-C)|
           (hnRNP 48) (HRP48.1)
          Length = 421

 Score = 49.7 bits (117), Expect = 4e-06
 Identities = 29/89 (32%), Positives = 51/89 (57%), Gaps = 1/89 (1%)
 Frame = +2

Query: 62  EQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQ-NGVSKGFGFVRFAER 238
           ++ ++  G +VF+GGLP + TE  LR  F+  G++ ++ IM DQ    S+GFGF+ F E 
Sbjct: 88  QKPKKGGGYKVFLGGLPSNVTETDLRTFFNRYGKVTEVVIMYDQEKKKSRGFGFLSF-EE 146

Query: 239 ECAYIAKRQKNGVELQGKRLAVDLSLDQD 325
           E +      +  + L GK++ +  +  +D
Sbjct: 147 ESSVEHVTNERYINLNGKQVEIKKAEPRD 175



 Score = 46.2 bits (108), Expect = 4e-05
 Identities = 26/59 (44%), Positives = 37/59 (62%), Gaps = 1/59 (1%)
 Frame = +2

Query: 62  EQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMK-DQNGVSKGFGFVRFAE 235
           E+D R K   +FVGGL    T+  L   F   G+I+D  +MK +++G S+GFGFV FA+
Sbjct: 2   EEDERGK---LFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFAD 57



to top

>HNRPG_RAT (P84586) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)|
           (RNA-binding motif protein, X chromosome)
          Length = 388

 Score = 49.7 bits (117), Expect = 4e-06
 Identities = 27/74 (36%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
 Frame = +2

Query: 89  EVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKD-QNGVSKGFGFVRFAERECAYIAKRQ 265
           ++F+GGL     E  L  +F   G IV++ +MKD +   S+GF FV F     A    R 
Sbjct: 9   KLFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKDVARD 68

Query: 266 KNGVELQGKRLAVD 307
            NG  L GK + V+
Sbjct: 69  MNGKSLDGKAIKVE 82



to top

>SAP49_SCHPO (O14102) Spliceosome-associated protein 49|
          Length = 335

 Score = 49.3 bits (116), Expect = 5e-06
 Identities = 32/91 (35%), Positives = 46/91 (50%), Gaps = 4/91 (4%)
 Frame = +2

Query: 65  QDRRVK---GAEVFVGGLPRSATEGTLREIFSTCGEIVDL-RIMKDQNGVSKGFGFVRFA 232
           QDR V    GA +FVG L     E  L + FS  G++V   ++ +D+NG SKG+GFV + 
Sbjct: 89  QDRGVNTLIGANLFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDENGRSKGYGFVSYD 148

Query: 233 ERECAYIAKRQKNGVELQGKRLAVDLSLDQD 325
             E A  A    N   L  K + V  +  ++
Sbjct: 149 SFETADAAIEAMNNQFLMNKPITVSYAFKRE 179



to top

>SFPQ_MOUSE (Q8VIJ6) Splicing factor, proline- and glutamine-rich|
           (Polypyrimidine tract-binding protein-associated
           splicing factor) (PTB-associated splicing factor) (PSF)
           (DNA-binding p52/p100 complex, 100 kDa subunit)
          Length = 699

 Score = 49.3 bits (116), Expect = 5e-06
 Identities = 32/96 (33%), Positives = 47/96 (48%)
 Frame = +2

Query: 92  VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKRQKN 271
           +FVG LP   TE   + +F+  GE  ++ I K      KGFGF++   R  A IAK + +
Sbjct: 291 LFVGNLPADITEDEFKRLFAKYGEPGEVFINK-----GKGFGFIKLESRALAEIAKAELD 345

Query: 272 GVELQGKRLAVDLSLDQDTLFFGNLCKEWSAEEFEE 379
              ++G++L V  +     L   NL    S E  EE
Sbjct: 346 DTPMRGRQLRVRFATHAAALSVRNLSPYVSNELLEE 381



to top

>SFPQ_HUMAN (P23246) Splicing factor, proline- and glutamine-rich|
           (Polypyrimidine tract-binding protein-associated
           splicing factor) (PTB-associated splicing factor) (PSF)
           (DNA-binding p52/p100 complex, 100 kDa subunit) (100-kDa
           DNA-pairing protein) (hPOMp
          Length = 707

 Score = 49.3 bits (116), Expect = 5e-06
 Identities = 32/96 (33%), Positives = 47/96 (48%)
 Frame = +2

Query: 92  VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKRQKN 271
           +FVG LP   TE   + +F+  GE  ++ I K      KGFGF++   R  A IAK + +
Sbjct: 299 LFVGNLPADITEDEFKRLFAKYGEPGEVFINK-----GKGFGFIKLESRALAEIAKAELD 353

Query: 272 GVELQGKRLAVDLSLDQDTLFFGNLCKEWSAEEFEE 379
              ++G++L V  +     L   NL    S E  EE
Sbjct: 354 DTPMRGRQLRVRFATHAAALSVRNLSPYVSNELLEE 389



to top

>MRD1_NEUCR (Q7SG09) Multiple RNA-binding domain-containing protein 1|
          Length = 827

 Score = 49.3 bits (116), Expect = 5e-06
 Identities = 27/82 (32%), Positives = 43/82 (52%)
 Frame = +2

Query: 80  KGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAK 259
           +G ++ V  LP   T+  +R +FS  G++V LRI K  N  S+GF F  F+  + A  A 
Sbjct: 702 QGTKLVVKNLPFEVTKKEVRTLFSAYGKLVALRIPKKFNQSSRGFAFAEFSTAKEALNAF 761

Query: 260 RQKNGVELQGKRLAVDLSLDQD 325
                  + G+RL +D +  +D
Sbjct: 762 NSLKDTHILGRRLVIDFAQAED 783



to top

>MRD1_KLULA (Q6CQR6) Multiple RNA-binding domain-containing protein 1|
          Length = 878

 Score = 49.3 bits (116), Expect = 5e-06
 Identities = 38/146 (26%), Positives = 71/146 (48%)
 Frame = +2

Query: 32   RRAASHGDYDEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKG 211
            R+  S  +   + ++    ++ V  LP  AT   + E+FS+ G++  +R+ K  +  ++G
Sbjct: 734  RQGTSTTNASSKKKKKNQGKIIVKNLPFEATRKDVFELFSSFGQLKSVRVPKKFDKSARG 793

Query: 212  FGFVRFAERECAYIAKRQKNGVELQGKRLAVDLSLDQDTLFFGNLCKEWSAEEFEELIHK 391
            F FV F   + A  A  Q  GV L G+RL ++  ++QD         E   ++ E++  K
Sbjct: 794  FAFVEFLLPKEAENAMDQLQGVHLLGRRLVMEF-VEQD--------PEDVEQQIEKMTRK 844

Query: 392  TFKDVISVDLAMAPNLDSSTSKRRLN 469
              K V +  +A   N    + KR+++
Sbjct: 845  VKKQVNTTKIANMRN----SGKRKID 866



 Score = 37.4 bits (85), Expect = 0.019
 Identities = 28/102 (27%), Positives = 51/102 (50%), Gaps = 1/102 (0%)
 Frame = +2

Query: 2   RHEGEEPKMDRRAASHGDYDEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRI 181
           + + EE +++    S  +   +  R  G  +F+  +  +ATE   R++FS  GE+ ++ I
Sbjct: 303 QQQPEETEVETSQESEEEKSLKKIRETG-RLFLRNILYTATEDDFRKLFSPYGELEEVHI 361

Query: 182 MKD-QNGVSKGFGFVRFAERECAYIAKRQKNGVELQGKRLAV 304
             D + G SKGF +V F   + A  A  + +    QG+ L +
Sbjct: 362 AVDTRTGQSKGFAYVLFKNADNAATAFVELDKQIFQGRLLHI 403



 Score = 33.9 bits (76), Expect = 0.22
 Identities = 21/87 (24%), Positives = 40/87 (45%), Gaps = 11/87 (12%)
 Frame = +2

Query: 86  AEVFVGGLPRSATEGTLREIFS-----------TCGEIVDLRIMKDQNGVSKGFGFVRFA 232
           + V V GLP    E  LR++                 + D+++MK+++G S+ F F+ F 
Sbjct: 2   SRVIVKGLPIYLKEDRLRDLIEKRLTQKHQSTDVQSYLSDVKLMKNRDGESRRFAFIGFR 61

Query: 233 ERECAYIAKRQKNGVELQGKRLAVDLS 313
           + E A+      NG  +   ++ V ++
Sbjct: 62  DEEDAFDCVNYFNGTFVDTSKIEVSMA 88



to top

>ELAV1_MOUSE (P70372) ELAV-like protein 1 (Hu-antigen R) (HuR) (Elav-like|
           generic protein) (MelG)
          Length = 326

 Score = 49.3 bits (116), Expect = 5e-06
 Identities = 21/55 (38%), Positives = 38/55 (69%), Gaps = 1/55 (1%)
 Frame = +2

Query: 77  VKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQN-GVSKGFGFVRFAER 238
           +K A +++ GLPR+ T+  + ++FS  G I++ R++ DQ  G+S+G  F+RF +R
Sbjct: 103 IKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKR 157



 Score = 46.6 bits (109), Expect = 3e-05
 Identities = 31/127 (24%), Positives = 63/127 (49%), Gaps = 9/127 (7%)
 Frame = +2

Query: 38  AASHGDYDEQDRR--VKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQ-NGVSK 208
           +  + D+  +D R  +    + V  LP++ T+  LR +FS+ GE+   ++++D+  G S 
Sbjct: 2   SGGYEDHMAEDCRGDIGRTNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSL 61

Query: 209 GFGFVRFAERECAYIAKRQKNGVELQGKRLAVDLS------LDQDTLFFGNLCKEWSAEE 370
           G+GFV +   + A  A    NG+ LQ K + V  +      +    L+   L +  + ++
Sbjct: 62  GYGFVNYVTAKDAERAISTLNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRTMTQKD 121

Query: 371 FEELIHK 391
            E++  +
Sbjct: 122 VEDMFSR 128



 Score = 41.2 bits (95), Expect = 0.001
 Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
 Frame = +2

Query: 92  VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQN-GVSKGFGFVRFAERECAYIAKRQK 268
           +F+  L + A EG L ++F   G + ++++++D N    KGFGFV     E + +A    
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEESAMAIASL 305

Query: 269 NGVELQGKRLAVDLSLDQ 322
           NG  L  K L V    ++
Sbjct: 306 NGYRLGDKILQVSFKTNK 323



to top

>RB87F_DROME (P48810) Heterogeneous nuclear ribonucleoprotein 87F (HRP36.1|
           protein) (Protein P11)
          Length = 385

 Score = 49.3 bits (116), Expect = 5e-06
 Identities = 44/155 (28%), Positives = 74/155 (47%), Gaps = 15/155 (9%)
 Frame = +2

Query: 44  SHGDYDEQDRRVKGAEV---FVGGLPRSATEGTLREIFSTCGEIVDLRIMKD-QNGVSKG 211
           S+G+YD+ +   +  ++   F+GGL    T+  L+  F   G IVD+ +MKD +   S+G
Sbjct: 7   SNGNYDDGEEITEPEQLRKLFIGGLDYRTTDDGLKAHFEKWGNIVDVVVMKDPKTKRSRG 66

Query: 212 FGFVRFAER---ECAYIAKRQK-NGVELQGKRLAVDLSLDQDT-------LFFGNLCKEW 358
           FGF+ +++    + A  A+  K +G  ++ KR      +D          LF G L  + 
Sbjct: 67  FGFITYSQSYMIDNAQNARPHKIDGRTVEPKRAVPRQEIDSPNAGATVKKLFVGGLRDDH 126

Query: 359 SAEEFEELIHKTFKDVISVDLAMAPNLDSSTSKRR 463
             E   E   K F  ++SV++      D  T K+R
Sbjct: 127 DEECLREYF-KDFGQIVSVNIVS----DKDTGKKR 156



 Score = 42.4 bits (98), Expect = 6e-04
 Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
 Frame = +2

Query: 17  EPKMDRRAASHGDYDEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQN 196
           EPK   RA    + D  +      ++FVGGL     E  LRE F   G+IV + I+ D++
Sbjct: 95  EPK---RAVPRQEIDSPNAGATVKKLFVGGLRDDHDEECLREYFKDFGQIVSVNIVSDKD 151

Query: 197 -GVSKGFGFVRF 229
            G  +GF F+ F
Sbjct: 152 TGKKRGFAFIEF 163



to top

>ROAA_MOUSE (Q99020) Heterogeneous nuclear ribonucleoprotein A/B (hnRNP A/B)|
           (CArG-binding factor-A) (CBF-A)
          Length = 285

 Score = 48.9 bits (115), Expect = 6e-06
 Identities = 37/146 (25%), Positives = 65/146 (44%), Gaps = 5/146 (3%)
 Frame = +2

Query: 20  PKMDRRAASHGDYDEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQN- 196
           P  ++  A     +         ++FVGGL    ++  L++ F+  GE+VD  I  D N 
Sbjct: 53  PSGNQNGAEGDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNT 112

Query: 197 GVSKGFGFVRFAERECAYIAKRQK----NGVELQGKRLAVDLSLDQDTLFFGNLCKEWSA 364
           G S+GFGF+ F +         QK    +G  +  K+           +F G L  E + 
Sbjct: 113 GRSRGFGFILFKDSSSVEKVLDQKEHRLDGRVIDPKKAMAMKKDPVKKIFVGGLNPEATE 172

Query: 365 EEFEELIHKTFKDVISVDLAMAPNLD 442
           E+  E   + F ++ +++L + P L+
Sbjct: 173 EKIREYFGQ-FGEIEAIELPIDPKLN 197



to top

>NUCL_CHICK (P15771) Nucleolin (Protein C23)|
          Length = 694

 Score = 48.9 bits (115), Expect = 6e-06
 Identities = 32/91 (35%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
 Frame = +2

Query: 44  SHGDYDEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQN-GVSKGFGF 220
           + G +++Q + +     FV GL    TE TLRE F      +  RI+ D++ G SKGFGF
Sbjct: 544 ARGGFNQQSKTL-----FVRGLSEDTTEETLRESFEGS---ISARIVTDRDTGSSKGFGF 595

Query: 221 VRFAERECAYIAKRQKNGVELQGKRLAVDLS 313
           V F+  E A  AK      E+ G ++ +D +
Sbjct: 596 VDFSSPEDAKAAKEAMEDGEIDGNKVTLDFA 626



to top

>GBP2_YEAST (P25555) Single-strand telomeric DNA-binding protein GBP2|
           (G-strand-binding protein 2) (RAP1 localization factor
           6)
          Length = 427

 Score = 48.9 bits (115), Expect = 6e-06
 Identities = 30/101 (29%), Positives = 50/101 (49%)
 Frame = +2

Query: 2   RHEGEEPKMDRRAASHGDYDEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRI 181
           R +   P+  +  +     +E D    G EVF+  LP S    +L+++F  CG ++   +
Sbjct: 194 RQDNPPPEAAKEFSKKATREEIDN---GFEVFIINLPYSMNWQSLKDMFKECGHVLRADV 250

Query: 182 MKDQNGVSKGFGFVRFAERECAYIAKRQKNGVELQGKRLAV 304
             D NG S+GFG V +   +    A    NG+E++G+ L V
Sbjct: 251 ELDFNGFSRGFGSVIYPTEDEMIRAIDTFNGMEVEGRVLEV 291



 Score = 36.2 bits (82), Expect = 0.043
 Identities = 22/71 (30%), Positives = 35/71 (49%)
 Frame = +2

Query: 92  VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKRQKN 271
           +FV  L    T   L+E+F T GE+V+  I+  + G  +G G V F + E    A  + +
Sbjct: 124 IFVRNLTFDCTPEDLKELFGTVGEVVEADIITSK-GHHRGMGTVEFTKNESVQDAISKFD 182

Query: 272 GVELQGKRLAV 304
           G     ++L V
Sbjct: 183 GALFMDRKLMV 193



to top

>GRP7_ARATH (Q03250) Glycine-rich RNA-binding protein 7|
          Length = 176

 Score = 48.9 bits (115), Expect = 6e-06
 Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
 Frame = +2

Query: 95  FVGGLPRSATEGTLREIFSTCGEIVDLRIMKD-QNGVSKGFGFVRFAERECAYIAKRQKN 271
           FVGGL  +  +  L   F+  G+++D +I+ D + G S+GFGFV F + +    A    N
Sbjct: 11  FVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMN 70

Query: 272 GVELQGKRLAVD 307
           G +L G+ + V+
Sbjct: 71  GQDLDGRSITVN 82



to top

>DAZL_MACFA (Q95192) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted|
           in azoospermia-like 1)
          Length = 295

 Score = 48.9 bits (115), Expect = 6e-06
 Identities = 30/98 (30%), Positives = 52/98 (53%)
 Frame = +2

Query: 38  AASHGDYDEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFG 217
           AAS G Y   + ++    VFVGG+     E  +R  F+  G + +++I+ D+ GVSKG+G
Sbjct: 25  AASQG-YVLPEGKIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYG 83

Query: 218 FVRFAERECAYIAKRQKNGVELQGKRLAVDLSLDQDTL 331
           FV F       + K  ++ +   GK+L +  ++ +  L
Sbjct: 84  FVSFFND--VDVQKIVESQINFHGKKLKLGPAIRKQNL 119



to top

>GAR2_SCHPO (P41891) Protein gar2|
          Length = 500

 Score = 48.9 bits (115), Expect = 6e-06
 Identities = 35/101 (34%), Positives = 50/101 (49%), Gaps = 1/101 (0%)
 Frame = +2

Query: 2   RHEGEEPKMDRRAASHGDYDEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRI 181
           R    +P   +RA + GD   +        VFVG L  +ATE  L   F  CG+I  +R+
Sbjct: 342 RPANPQPYAQQRAGNFGDQLSEPSDT----VFVGNLSFNATEDDLSTAFGGCGDIQSIRL 397

Query: 182 MKD-QNGVSKGFGFVRFAERECAYIAKRQKNGVELQGKRLA 301
             D Q+G  KGFG+V F++ + A      K  VE+ G  +A
Sbjct: 398 PTDPQSGRLKGFGYVTFSDIDSA------KKCVEMNGHFIA 432



 Score = 44.3 bits (103), Expect = 2e-04
 Identities = 28/75 (37%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
 Frame = +2

Query: 92  VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKD-QNGVSKGFGFVRFAERECAYIAKRQK 268
           VFVG L  +  +  L + F   G IV  R++ D Q+G SKG+G+V F   E A  A    
Sbjct: 265 VFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAAN 324

Query: 269 NGVELQGKRLAVDLS 313
              E+ G+ + +DLS
Sbjct: 325 GTKEIDGRMVNLDLS 339



to top

>NUCL_XENLA (P20397) Nucleolin (Protein C23)|
          Length = 650

 Score = 48.9 bits (115), Expect = 6e-06
 Identities = 30/75 (40%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
 Frame = +2

Query: 92  VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQN-GVSKGFGFVRFAERECAYIAKRQK 268
           +FV GL    TE TL+E F      V+ RI+ D++ G SKGFGFV F+  E A  AK   
Sbjct: 504 LFVRGLSEDTTEETLKEAFDGS---VNARIVTDRDTGASKGFGFVDFSTAEDAKAAKEAM 560

Query: 269 NGVELQGKRLAVDLS 313
              E+ G ++ +D +
Sbjct: 561 EDGEIDGNKVTLDFA 575



 Score = 48.9 bits (115), Expect = 6e-06
 Identities = 29/102 (28%), Positives = 55/102 (53%), Gaps = 1/102 (0%)
 Frame = +2

Query: 11  GEEPKMDRRAASHGDYDEQDRRVKGAE-VFVGGLPRSATEGTLREIFSTCGEIVDLRIMK 187
           G E K+++  A   +   ++++ + +  +FV  +P S T   L+EIF       D+RI  
Sbjct: 298 GTEVKIEKAMAFDKNKTAENKKERDSRTLFVKNIPYSTTVEELQEIFENAK---DIRIPT 354

Query: 188 DQNGVSKGFGFVRFAERECAYIAKRQKNGVELQGKRLAVDLS 313
            ++G +KG  +V F+  + A  A  +K G E++G+ + VD +
Sbjct: 355 GKDGSNKGIAYVEFSNEDEANKALEEKQGAEIEGRSIFVDFT 396



 Score = 45.1 bits (105), Expect = 9e-05
 Identities = 41/154 (26%), Positives = 67/154 (43%), Gaps = 18/154 (11%)
 Frame = +2

Query: 50  GDYDEQDRRVKGAE-----VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGF 214
           G+  +     KG E     + V  L  SATE +LRE+F    +   +RI ++Q G +KGF
Sbjct: 397 GEKSQNSGNKKGPEGDSKVLVVNNLSYSATEDSLREVFE---KATSIRIPQNQ-GRAKGF 452

Query: 215 GFVRFAERECAYIAKRQKNGVELQGKRLAVDL-------------SLDQDTLFFGNLCKE 355
            F+ F+  E A  A    N  E++G+ + ++              S    TLF   L ++
Sbjct: 453 AFIEFSSAEDAKDAMDSCNNTEIEGRSIRLEFSQGGGPQGGGRGGSAQSKTLFVRGLSED 512

Query: 356 WSAEEFEELIHKTFKDVISVDLAMAPNLDSSTSK 457
            + E  +E          SV+  +  + D+  SK
Sbjct: 513 TTEETLKEAFDG------SVNARIVTDRDTGASK 540



to top

>MRD1_CANGA (Q6FXP4) Multiple RNA-binding domain-containing protein 1|
          Length = 861

 Score = 48.9 bits (115), Expect = 6e-06
 Identities = 28/94 (29%), Positives = 50/94 (53%)
 Frame = +2

Query: 23  KMDRRAASHGDYDEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGV 202
           K+  R  + G   ++ ++ K  ++ V  LP  AT   + E+F++ G++  +R+ K  +  
Sbjct: 719 KLSHRQGNAGS--QEKKKAKNGKIIVKNLPFEATRKDVFELFNSFGQLKSVRVPKKFDKS 776

Query: 203 SKGFGFVRFAERECAYIAKRQKNGVELQGKRLAV 304
           ++GF FV F   + A  A  Q  GV L G+RL +
Sbjct: 777 ARGFAFVEFVLPKEAENAMDQLQGVHLLGRRLVM 810



 Score = 38.5 bits (88), Expect = 0.009
 Identities = 24/76 (31%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
 Frame = +2

Query: 80  KGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKD-QNGVSKGFGFVRFAERECAYIA 256
           K   +F+  +  S+TE   +++FS  GE+ ++ +  D + G SKGF +V FA+ E A  A
Sbjct: 323 KTGRLFLRNILYSSTEDDFKKLFSPYGELKEVHVAVDTRTGNSKGFAYVLFAKPEEAVQA 382

Query: 257 KRQKNGVELQGKRLAV 304
             + +    QG+ L +
Sbjct: 383 YIELDKQIFQGRLLHI 398



 Score = 36.2 bits (82), Expect = 0.043
 Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 11/87 (12%)
 Frame = +2

Query: 86  AEVFVGGLPRSATEGTLREIFS-----------TCGEIVDLRIMKDQNGVSKGFGFVRFA 232
           + V V GLP   TE  L++ F+             G I DLRI+K++ G S+ F F+ + 
Sbjct: 2   SRVIVKGLPIYLTEPELQKHFNKRLITTHATSNVDGLITDLRILKNREGKSRRFAFIGYK 61

Query: 233 ERECAYIAKRQKNGVELQGKRLAVDLS 313
             + A  A    +G  +   ++ VD++
Sbjct: 62  NEQDALDAVNYFDGSFIYTSKIEVDMA 88



to top

>ROC4_NICSY (P19683) 31 kDa ribonucleoprotein, chloroplast precursor|
          Length = 315

 Score = 48.5 bits (114), Expect = 8e-06
 Identities = 29/99 (29%), Positives = 52/99 (52%), Gaps = 3/99 (3%)
 Frame = +2

Query: 35  RAASHGDYDEQDRRV--KGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKD-QNGVS 205
           +AA  G+  E+  R   +   ++VG +P    +  L ++FS  G++V  R++ D + G S
Sbjct: 211 KAARRGERPERPPRTFEQSYRIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRS 270

Query: 206 KGFGFVRFAERECAYIAKRQKNGVELQGKRLAVDLSLDQ 322
           +GFGFV  A       A    +G  L G+ + V+++ D+
Sbjct: 271 RGFGFVTMASEAEMSDAIANLDGQSLDGRTIRVNVAEDR 309



 Score = 35.8 bits (81), Expect = 0.057
 Identities = 32/113 (28%), Positives = 49/113 (43%), Gaps = 14/113 (12%)
 Frame = +2

Query: 11  GEEPKMDRRAASHGDYDEQDR------------RVKGAEVFVGGLPRSATEGTLREIFST 154
           GEE + +    + GD  E D               + A++FVG LP       L  +F  
Sbjct: 99  GEETEEEGFVEAVGDAGESDEVEADEEEEEFQEPPEDAKLFVGNLPYDVDSEGLARLFEQ 158

Query: 155 CG--EIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKRQKNGVELQGKRLAVD 307
            G  EI ++   +D +  S+GFGFV  +  E A  A    N  ++ G+ L V+
Sbjct: 159 AGVVEIAEVIYNRDTDQ-SRGFGFVTMSTVEEAEKAVEMYNRYDVNGRLLTVN 210



to top

>CTF1_SCHPO (O43040) Cleavage and termination factor 1 (Transcription|
           termination factor ctf1)
          Length = 363

 Score = 48.5 bits (114), Expect = 8e-06
 Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
 Frame = +2

Query: 83  GAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKD-QNGVSKGFGFVRFAERECAYIAK 259
           G  VFVG +P   +E  + EIF+  G +   +++ D + G  KG+GF  F + E   +A 
Sbjct: 6   GNVVFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAMAV 65

Query: 260 RQKNGVELQGKRLAVD 307
           R+ N  EL  +++ V+
Sbjct: 66  RKLNNSELGPRKIRVE 81



to top

>RBM5_HUMAN (P52756) RNA-binding protein 5 (RNA-binding motif protein 5)|
           (Putative tumor suppressor LUCA15) (G15 protein)
           (NY-REN-9 antigen)
          Length = 815

 Score = 48.5 bits (114), Expect = 8e-06
 Identities = 35/100 (35%), Positives = 53/100 (53%), Gaps = 10/100 (10%)
 Frame = +2

Query: 44  SHGDYDEQDRRV------KGAEVFVGGLPRSATEGTLREIFSTCG--EIVDLRIMKDQNG 199
           S GDY E D R       +   + + GLP + TE  +RE+  +    +  D+R+MK + G
Sbjct: 78  SDGDYGEHDYRHDISDERESKTIMLRGLPITITESDIREMMESFEGPQPADVRLMKRKTG 137

Query: 200 VSKGFGFVRFAERECA--YIAKRQKNGVELQGKRLAVDLS 313
           VS+GF FV F   + A  ++   QK  V +QGK +A+  S
Sbjct: 138 VSRGFAFVEFYHLQDATSWMEANQKKLV-IQGKHIAMHYS 176



to top

>RBM7_HUMAN (Q9Y580) RNA-binding protein 7 (RNA-binding motif protein 7)|
          Length = 266

 Score = 48.5 bits (114), Expect = 8e-06
 Identities = 24/71 (33%), Positives = 37/71 (52%)
 Frame = +2

Query: 92  VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKRQKN 271
           +FVG L    TE  L E+F   G ++ ++I KD++G  K F FV F        A    N
Sbjct: 12  LFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEVSVPYAMNLLN 71

Query: 272 GVELQGKRLAV 304
           G++L G+ + +
Sbjct: 72  GIKLYGRPIKI 82



to top

>ELAV_DROME (P16914) Protein elav (Embryonic lethal abnormal visual protein)|
          Length = 483

 Score = 48.5 bits (114), Expect = 8e-06
 Identities = 27/68 (39%), Positives = 42/68 (61%), Gaps = 2/68 (2%)
 Frame = +2

Query: 77  VKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKD--QNGVSKGFGFVRFAERECAY 250
           +KGA ++V GLP++ T+  L  IF+  G I+  RI+++   +  +KG GF+RF +RE A 
Sbjct: 245 IKGANLYVSGLPKTMTQQELEAIFAPFGAIITSRILQNAGNDTQTKGVGFIRFDKREEAT 304

Query: 251 IAKRQKNG 274
            A    NG
Sbjct: 305 RAIIALNG 312



 Score = 47.0 bits (110), Expect = 2e-05
 Identities = 34/142 (23%), Positives = 60/142 (42%), Gaps = 20/142 (14%)
 Frame = +2

Query: 17  EPKMDRRAASHGDYDEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQN 196
           +P  +  A S               + V  LP++ TE  +R +FS+ GEI  +++++D++
Sbjct: 126 QPNTNGNAGSGSQNGSNGSTETRTNLIVNYLPQTMTEDEIRSLFSSVGEIESVKLIRDKS 185

Query: 197 --------------GVSKGFGFVRFAERECAYIAKRQKNGVELQGKRLAVDL------SL 316
                         G S G+GFV +   + A  A    NG+ LQ K + V        ++
Sbjct: 186 QVYIDPLNPQAPSKGQSLGYGFVNYVRPQDAEQAVNVLNGLRLQNKTIKVSFARPSSDAI 245

Query: 317 DQDTLFFGNLCKEWSAEEFEEL 382
               L+   L K  + +E E +
Sbjct: 246 KGANLYVSGLPKTMTQQELEAI 267



 Score = 35.0 bits (79), Expect = 0.097
 Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
 Frame = +2

Query: 92  VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQN-GVSKGFGFVRFAERECAYIAKRQK 268
           +F+  L     E  L ++F   G +  ++I+KD      KG+GFV     + A +A R  
Sbjct: 404 IFIYNLAPETEEAALWQLFGPFGAVQSVKIVKDPTTNQCKGYGFVSMTNYDEAAMAIRAL 463

Query: 269 NGVELQGKRLAVDLSLDQ 322
           NG  +  + L V    ++
Sbjct: 464 NGYTMGNRVLQVSFKTNK 481



to top

>DAZL_HUMAN (Q92904) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted|
           in azoospermia-like 1) (DAZ homolog)
           (SPGY-like-autosomal)
          Length = 295

 Score = 48.5 bits (114), Expect = 8e-06
 Identities = 28/98 (28%), Positives = 51/98 (52%)
 Frame = +2

Query: 38  AASHGDYDEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFG 217
           AA+   Y   + ++    VFVGG+     E  +R  F+  G + +++I+ D+ GVSKG+G
Sbjct: 24  AATSQGYILPEGKIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYG 83

Query: 218 FVRFAERECAYIAKRQKNGVELQGKRLAVDLSLDQDTL 331
           FV F       + K  ++ +   GK+L +  ++ +  L
Sbjct: 84  FVSFFND--VDVQKIVESQINFHGKKLKLGPAIRKQNL 119



to top

>HNRPG_MOUSE (O35479) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)|
           (RNA-binding motif protein, X chromosome)
          Length = 388

 Score = 48.5 bits (114), Expect = 8e-06
 Identities = 27/74 (36%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
 Frame = +2

Query: 89  EVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKD-QNGVSKGFGFVRFAERECAYIAKRQ 265
           ++F+GGL     E  L  +F   G IV++ +MKD +   S+GF FV       A  A R 
Sbjct: 9   KLFIGGLNTETNEKALEAVFGKYGRIVEIILMKDRETNKSRGFAFVTLESPADAKDAARD 68

Query: 266 KNGVELQGKRLAVD 307
            NG  L GK + V+
Sbjct: 69  MNGKSLDGKAIKVE 82



to top

>FCA_ARATH (O04425) Flowering time control protein FCA|
          Length = 747

 Score = 48.5 bits (114), Expect = 8e-06
 Identities = 24/62 (38%), Positives = 38/62 (61%)
 Frame = +2

Query: 89  EVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKRQK 268
           ++FVG L + ATE  + EIF   G + D+ +M+D+   S+G GFV+++ +E A  A    
Sbjct: 212 KLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYRQSRGCGFVKYSSKETAMAAIDGL 271

Query: 269 NG 274
           NG
Sbjct: 272 NG 273



 Score = 45.1 bits (105), Expect = 9e-05
 Identities = 37/128 (28%), Positives = 63/128 (49%), Gaps = 14/128 (10%)
 Frame = +2

Query: 41  ASHGDYDEQD--RRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKD-QNGVSKG 211
           + HG +   D   R    ++FVG +PR+ATE  +R  F   G ++++ ++KD + G  +G
Sbjct: 103 SDHGSFTGTDVSDRSSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQG 162

Query: 212 FGFVRFAERECAYIAKRQ-KNGVELQGKRLAVD----------LSLDQDTLFFGNLCKEW 358
             FV++A  + A  A R   N + L G    V           +   +  LF G+L K+ 
Sbjct: 163 CCFVKYATSKDADRAIRALHNQITLPGGTGPVQVRYADGERERIGTLEFKLFVGSLNKQA 222

Query: 359 SAEEFEEL 382
           + +E EE+
Sbjct: 223 TEKEVEEI 230



to top

>ELAV_DROVI (P23241) Protein elav (Embryonic lethal abnormal visual protein)|
          Length = 519

 Score = 48.5 bits (114), Expect = 8e-06
 Identities = 27/68 (39%), Positives = 42/68 (61%), Gaps = 2/68 (2%)
 Frame = +2

Query: 77  VKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKD--QNGVSKGFGFVRFAERECAY 250
           +KGA ++V GLP++ T+  L  IF+  G I+  RI+++   +  +KG GF+RF +RE A 
Sbjct: 281 IKGANLYVSGLPKTMTQQELEAIFAPFGAIITSRILQNAGNDTQTKGVGFIRFDKREEAT 340

Query: 251 IAKRQKNG 274
            A    NG
Sbjct: 341 RAIIALNG 348



 Score = 46.2 bits (108), Expect = 4e-05
 Identities = 31/117 (26%), Positives = 55/117 (47%), Gaps = 20/117 (17%)
 Frame = +2

Query: 92  VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQN--------------GVSKGFGFVRF 229
           + V  LP++ TE  +R +FS+ GEI  +++++D++              G S G+GFV +
Sbjct: 187 LIVNYLPQTMTEDEIRSLFSSVGEIESVKLIRDKSQVYIDPLNPQAPSKGQSLGYGFVNY 246

Query: 230 AERECAYIAKRQKNGVELQGKRLAVDL------SLDQDTLFFGNLCKEWSAEEFEEL 382
              + A  A    NG+ LQ K + V        ++    L+   L K  + +E E +
Sbjct: 247 VRPQDAEQAVNVLNGLRLQNKTIKVSFARPSSDAIKGANLYVSGLPKTMTQQELEAI 303



 Score = 35.0 bits (79), Expect = 0.097
 Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
 Frame = +2

Query: 92  VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQN-GVSKGFGFVRFAERECAYIAKRQK 268
           +F+  L     E  L ++F   G +  ++I+KD      KG+GFV     + A +A R  
Sbjct: 440 IFIYNLAPETEEAALWQLFGPFGAVQSVKIVKDPTTNQCKGYGFVSMTNYDEAAMAIRAL 499

Query: 269 NGVELQGKRLAVDLSLDQ 322
           NG  +  + L V    ++
Sbjct: 500 NGYTMGNRVLQVSFKTNK 517



to top

>ROC5_NICSY (P19684) 33 kDa ribonucleoprotein, chloroplast precursor|
          Length = 324

 Score = 48.1 bits (113), Expect = 1e-05
 Identities = 32/106 (30%), Positives = 55/106 (51%), Gaps = 6/106 (5%)
 Frame = +2

Query: 8   EGEEPKMDRRAASHGDYDEQDRRVK-----GAEVFVGGLPRSATEGTLREIFSTCGEIVD 172
           E +E ++   A    + +E++ RV+     G  ++VG LP S T   L EIF+  G + +
Sbjct: 83  EDDEEEVALSAEEEEEIEEKEERVESESVEGGRLYVGNLPFSMTSSQLSEIFAEAGTVAN 142

Query: 173 LRIMKDQ-NGVSKGFGFVRFAERECAYIAKRQKNGVELQGKRLAVD 307
           + I+ D+    S+GF FV     E A  A R  +G ++ G+ + V+
Sbjct: 143 VEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRLFDGSQVGGRTVKVN 188



 Score = 39.3 bits (90), Expect = 0.005
 Identities = 22/76 (28%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
 Frame = +2

Query: 89  EVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQN-GVSKGFGFVRFAERECAYIAKRQ 265
           +++V  L  + T   LR+ F+     +  +++ D++ G S+GFGF+ F+  E    A   
Sbjct: 218 KLYVANLSWALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNSALDT 277

Query: 266 KNGVELQGKRLAVDLS 313
            N VEL+G+ L ++++
Sbjct: 278 MNEVELEGRPLRLNVA 293



to top

>ROA1_CAEEL (Q22037) Heterogeneous nuclear ribonucleoprotein A1|
          Length = 346

 Score = 48.1 bits (113), Expect = 1e-05
 Identities = 27/80 (33%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
 Frame = +2

Query: 89  EVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGV-SKGFGFVRFAERECAYIAKRQ 265
           ++FVGGL  + T+  +RE +S  GEI D+ +M+D     S+GFGFV F+ +     A +Q
Sbjct: 24  KIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMKQ 83

Query: 266 KNGVELQGKRLAVDLSLDQD 325
           +  + + GK +    ++ +D
Sbjct: 84  RPHI-IDGKTVDPKRAVPRD 102



to top

>CUGB1_MOUSE (P28659) CUG triplet repeat RNA-binding protein 1 (CUG-BP1)|
           (RNA-binding protein BRUNOL-2) (Deadenylation factor
           CUG-BP) (Deadenylation factor EDEN-BP) (Brain protein
           F41)
          Length = 486

 Score = 48.1 bits (113), Expect = 1e-05
 Identities = 22/65 (33%), Positives = 40/65 (61%)
 Frame = +2

Query: 62  EQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERE 241
           E++  V+  ++F+G + +  TE  +R +FS+ G+I + RI++  +G+S+G  FV F  R 
Sbjct: 100 EKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRT 159

Query: 242 CAYIA 256
            A  A
Sbjct: 160 MAQTA 164



 Score = 44.3 bits (103), Expect = 2e-04
 Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
 Frame = +2

Query: 44  SHGDYDEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKD-QNGVSKGFGF 220
           S G    Q    +GA +F+  LP+   +  L ++F   G +V  ++  D Q  +SK FGF
Sbjct: 387 SIGAAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGF 446

Query: 221 VRFAERECAYIAKRQKNGVELQGKRLAVDL 310
           V +     A  A +  NG ++  KRL V L
Sbjct: 447 VSYDNPVSAQAAIQSMNGFQIGMKRLKVQL 476



 Score = 40.8 bits (94), Expect = 0.002
 Identities = 25/83 (30%), Positives = 47/83 (56%), Gaps = 4/83 (4%)
 Frame = +2

Query: 47  HGDYDEQDRR-VKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQN---GVSKGF 214
           +G  D  D+  +   ++FVG +PR+ +E  LRE+F   G + ++ I++D++     SKG 
Sbjct: 2   NGTLDHPDQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINILRDRSQNPPQSKGC 61

Query: 215 GFVRFAERECAYIAKRQKNGVEL 283
            FV F  R+ A  A+   + +++
Sbjct: 62  CFVTFYTRKAALEAQNALHNMKV 84



to top

>CUGB1_HUMAN (Q92879) CUG triplet repeat RNA-binding protein 1 (CUG-BP1)|
           (RNA-binding protein BRUNOL-2) (Deadenylation factor
           CUG-BP) (50 kDa Nuclear polyadenylated RNA-binding
           protein) (EDEN-BP)
          Length = 486

 Score = 48.1 bits (113), Expect = 1e-05
 Identities = 22/65 (33%), Positives = 40/65 (61%)
 Frame = +2

Query: 62  EQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERE 241
           E++  V+  ++F+G + +  TE  +R +FS+ G+I + RI++  +G+S+G  FV F  R 
Sbjct: 100 EKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRA 159

Query: 242 CAYIA 256
            A  A
Sbjct: 160 MAQTA 164



 Score = 44.3 bits (103), Expect = 2e-04
 Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
 Frame = +2

Query: 44  SHGDYDEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKD-QNGVSKGFGF 220
           S G    Q    +GA +F+  LP+   +  L ++F   G +V  ++  D Q  +SK FGF
Sbjct: 387 SIGAAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGF 446

Query: 221 VRFAERECAYIAKRQKNGVELQGKRLAVDL 310
           V +     A  A +  NG ++  KRL V L
Sbjct: 447 VSYDNPVSAQAAIQSMNGFQIGMKRLKVQL 476



 Score = 40.4 bits (93), Expect = 0.002
 Identities = 24/83 (28%), Positives = 47/83 (56%), Gaps = 4/83 (4%)
 Frame = +2

Query: 47  HGDYDEQDRR-VKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQN---GVSKGF 214
           +G  D  D+  +   ++FVG +PR+ +E  LRE+F   G + ++ +++D++     SKG 
Sbjct: 2   NGTLDHPDQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGC 61

Query: 215 GFVRFAERECAYIAKRQKNGVEL 283
            FV F  R+ A  A+   + +++
Sbjct: 62  CFVTFYTRKAALEAQNALHNMKV 84



to top

>NUCL_MESAU (P08199) Nucleolin (Protein C23)|
          Length = 713

 Score = 48.1 bits (113), Expect = 1e-05
 Identities = 36/148 (24%), Positives = 68/148 (45%), Gaps = 10/148 (6%)
 Frame = +2

Query: 5   HEGEEPKMDRRAASHGDYDEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIM 184
           + GE+ +   R   +  +  + + +      +  L  SATE TL+E+F    +   +++ 
Sbjct: 463 YTGEKGQRQERTGKNSTWSGESKTL-----VLSNLSYSATEETLQEVFE---KATFIKVP 514

Query: 185 KDQNGVSKGFGFVRFAERECAYIAKRQKNGVELQGKRLAVDL----------SLDQDTLF 334
           ++Q G SKG+ F+ FA  E A  A    N +E++G+ + ++L          S    TLF
Sbjct: 515 QNQQGKSKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRLELQGPRGSPNARSQPSKTLF 574

Query: 335 FGNLCKEWSAEEFEELIHKTFKDVISVD 418
              L ++ + E  +E    + +  I  D
Sbjct: 575 VKGLSEDTTEETLKESFEGSVRARIVTD 602



 Score = 45.8 bits (107), Expect = 5e-05
 Identities = 30/73 (41%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
 Frame = +2

Query: 92  VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKD-QNGVSKGFGFVRFAERECAYIAKRQK 268
           +FV GL    TE TL+E F      V  RI+ D + G SKGFGFV F   E A  AK   
Sbjct: 573 LFVKGLSEDTTEETLKESFEGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAM 629

Query: 269 NGVELQGKRLAVD 307
              E+ G ++ +D
Sbjct: 630 EDGEIDGNKVTLD 642



 Score = 33.9 bits (76), Expect = 0.22
 Identities = 20/79 (25%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
 Frame = +2

Query: 71  RRVKGAEVFVG-GLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECA 247
           ++V+ A   +   L  + TE  L+E+F    + +++R++  Q+G SKG  ++ F     A
Sbjct: 387 KKVRAARTLLAKNLSFNITEDELKEVFE---DALEIRLVS-QDGKSKGIAYIEFKSEADA 442

Query: 248 YIAKRQKNGVELQGKRLAV 304
                +K G E+ G+ +++
Sbjct: 443 EKNLEEKQGAEIDGRSVSL 461



to top

>TRA2_DROME (P19018) Transformer-2 sex-determining protein|
          Length = 264

 Score = 48.1 bits (113), Expect = 1e-05
 Identities = 34/115 (29%), Positives = 58/115 (50%), Gaps = 8/115 (6%)
 Frame = +2

Query: 2   RHEGEEPKMDRRAASHGDYDEQDRRVKGAE-------VFVGGLPRSATEGTLREIFSTCG 160
           R   E P  + R  S     +++R  K  E       + V GL  + ++  +RE+F+  G
Sbjct: 62  RSSSESPPPEPRHRSGRSSRDRERMHKSREHPQASRCIGVFGLNTNTSQHKVRELFNKYG 121

Query: 161 EIVDLRIMKD-QNGVSKGFGFVRFAERECAYIAKRQKNGVELQGKRLAVDLSLDQ 322
            I  ++++ D Q   S+GF F+ F +   A  AK   +G+E+ G+R+ VD S+ Q
Sbjct: 122 PIERIQMVIDAQTQRSRGFCFIYFEKLSDARAAKDSCSGIEVDGRRIRVDFSITQ 176



to top

>SXL_CERCA (O61374) Sex-lethal homolog (CCSXL)|
          Length = 348

 Score = 48.1 bits (113), Expect = 1e-05
 Identities = 33/110 (30%), Positives = 53/110 (48%), Gaps = 7/110 (6%)
 Frame = +2

Query: 83  GAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKD-QNGVSKGFGFVRFAERECAYIAK 259
           G  + V  LP+  T+  L  +F T G I   RIM+D + G S G+ FV FA    +  A 
Sbjct: 109 GTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFAAETDSQRAI 168

Query: 260 RQKNGVELQGKRLAVDL------SLDQDTLFFGNLCKEWSAEEFEELIHK 391
           +  NG+ ++ KRL V        S+    L+  NL +  + ++ + +  K
Sbjct: 169 KSLNGITVRNKRLKVSYARPGGESIKDTNLYVTNLPRTITDDQLDTIFGK 218



to top

>RBM7_BOVIN (Q3MHY8) RNA-binding protein 7 (RNA-binding motif protein 7)|
          Length = 262

 Score = 47.8 bits (112), Expect = 1e-05
 Identities = 24/71 (33%), Positives = 37/71 (52%)
 Frame = +2

Query: 92  VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKRQKN 271
           +FVG L    TE  L E+F   G ++ ++I KD++G  K F FV F        A    N
Sbjct: 12  LFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEVSVPYAMNLLN 71

Query: 272 GVELQGKRLAV 304
           G++L G+ + +
Sbjct: 72  GIKLFGRPIKI 82



to top

>SGN1_YEAST (P40561) RNA-binding protein SGN1|
          Length = 250

 Score = 47.8 bits (112), Expect = 1e-05
 Identities = 32/90 (35%), Positives = 47/90 (52%), Gaps = 4/90 (4%)
 Frame = +2

Query: 47  HGDYDEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQN-GVSKGFGFV 223
           H    E D R     +FVG +    T   + + F  CG+I  + ++ D+N G  KG+G++
Sbjct: 55  HAHQLEADSR----SIFVGNITPDVTPEQIEDHFKDCGQIKRITLLYDRNTGTPKGYGYI 110

Query: 224 RF---AERECAYIAKRQKNGVELQGKRLAV 304
            F   A RE A     Q NG EL+GK++AV
Sbjct: 111 EFESPAYREKAL----QLNGGELKGKKIAV 136



to top

>DAZL_CALJA (Q9BGN8) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted|
           in azoospermia-like 1)
          Length = 296

 Score = 47.8 bits (112), Expect = 1e-05
 Identities = 28/98 (28%), Positives = 51/98 (52%)
 Frame = +2

Query: 38  AASHGDYDEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFG 217
           AA+   Y   + ++    VFVGG+     E  +R  F+  G + +++I+ D+ GVSKG+G
Sbjct: 24  AATSQGYVLPEGKIMPNTVFVGGIDVRMDETEIRGFFARYGSVKEVKIITDRTGVSKGYG 83

Query: 218 FVRFAERECAYIAKRQKNGVELQGKRLAVDLSLDQDTL 331
           FV F       + K  ++ +   GK+L +  ++ +  L
Sbjct: 84  FVSFFND--VDVQKIVESQINFHGKKLKLGPAIRKQNL 119



to top

>YG41_SCHPO (O60176) Hypothetical RNA-binding protein C23E6.01c in chromosome|
           II
          Length = 473

 Score = 47.4 bits (111), Expect = 2e-05
 Identities = 29/80 (36%), Positives = 42/80 (52%)
 Frame = +2

Query: 92  VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKRQKN 271
           VFVGGL +  +E  L+ +F   GEIV ++I        KG GFV+F  R+ A IA  Q  
Sbjct: 305 VFVGGLSKFVSEEELKYLFQNFGEIVYVKIPP-----GKGCGFVQFVNRQSAEIAINQLQ 359

Query: 272 GVELQGKRLAVDLSLDQDTL 331
           G  L   R+ +    +Q+ +
Sbjct: 360 GYPLGNSRIRLSWGRNQNPI 379



 Score = 31.6 bits (70), Expect = 1.1
 Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
 Frame = +2

Query: 92  VFVGGLPRSATEGTLREIF-STCGEIVDLRIMKD-QNGVSKGFGFVRFAE 235
           +FVG L  +  E  +  +F S        +IM D Q  VS+G+GFVRF +
Sbjct: 188 IFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRFTD 237



to top

>NUCL_HUMAN (P19338) Nucleolin (Protein C23)|
          Length = 709

 Score = 47.4 bits (111), Expect = 2e-05
 Identities = 32/104 (30%), Positives = 53/104 (50%), Gaps = 10/104 (9%)
 Frame = +2

Query: 98  VGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKRQKNGV 277
           +  L  SATE TL+E+F    +   +++ ++QNG SKG+ F+ FA  E A  A    N  
Sbjct: 489 LSNLSYSATEETLQEVFE---KATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKR 545

Query: 278 ELQGKRLAVDL----------SLDQDTLFFGNLCKEWSAEEFEE 379
           E++G+ + ++L          S    TLF   L ++ + E  +E
Sbjct: 546 EIEGRAIRLELQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKE 589



 Score = 45.8 bits (107), Expect = 5e-05
 Identities = 30/73 (41%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
 Frame = +2

Query: 92  VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKD-QNGVSKGFGFVRFAERECAYIAKRQK 268
           +FV GL    TE TL+E F      V  RI+ D + G SKGFGFV F   E A  AK   
Sbjct: 573 LFVKGLSEDTTEETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAM 629

Query: 269 NGVELQGKRLAVD 307
              E+ G ++ +D
Sbjct: 630 EDGEIDGNKVTLD 642



to top

>RBM7_MOUSE (Q9CQT2) RNA-binding protein 7 (RNA-binding motif protein 7)|
          Length = 265

 Score = 47.4 bits (111), Expect = 2e-05
 Identities = 24/71 (33%), Positives = 37/71 (52%)
 Frame = +2

Query: 92  VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKRQKN 271
           +FVG L    TE  L E+F   G ++ ++I KD++G  K F FV F        A    N
Sbjct: 12  LFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKLKQFAFVNFKHEVSVPYAMNLLN 71

Query: 272 GVELQGKRLAV 304
           G++L G+ + +
Sbjct: 72  GIKLFGRPIKI 82



to top

>PUB1_YEAST (P32588) Nuclear and cytoplasmic polyadenylated RNA-binding protein|
           PUB1 (ARS consensus-binding protein ACBP-60)
           (Poly(U)-binding protein) (Poly uridylate-binding
           protein)
          Length = 452

 Score = 47.4 bits (111), Expect = 2e-05
 Identities = 30/119 (25%), Positives = 56/119 (47%), Gaps = 8/119 (6%)
 Frame = +2

Query: 71  RRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAY 250
           R      ++VG L ++ TE  L++ F   G I +++IM D+N  +  + FV + +   A 
Sbjct: 69  RETSDRVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDAN 128

Query: 251 IAKRQKNGVELQGKRLAVDLSL--------DQDTLFFGNLCKEWSAEEFEELIHKTFKD 403
           IA +  NG +++   + ++ +         D   LF G+L    +    +E +   FKD
Sbjct: 129 IALQTLNGKQIENNIVKINWAFQSQQSSSDDTFNLFVGDL----NVNVDDETLRNAFKD 183



 Score = 41.6 bits (96), Expect = 0.001
 Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
 Frame = +2

Query: 92  VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKD-QNGVSKGFGFVRFAERECAYIAKRQK 268
           +FVG L  +  + TLR  F      +   +M D Q G S+G+GFV F  ++ A  A    
Sbjct: 163 LFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSM 222

Query: 269 NGVELQGKRLAVDLSLDQD 325
            G +L G+ L ++ +  +D
Sbjct: 223 QGQDLNGRPLRINWAAKRD 241



 Score = 28.9 bits (63), Expect = 6.9
 Identities = 18/68 (26%), Positives = 30/68 (44%)
 Frame = +2

Query: 95  FVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKRQKNG 274
           ++G +P  ATE  L  +F   G I+D +   +     KG  F+++   E A +       
Sbjct: 343 YIGNIPHFATEADLIPLFQNFGFILDFKHYPE-----KGCCFIKYDTHEQAAVCIVALAN 397

Query: 275 VELQGKRL 298
              QG+ L
Sbjct: 398 FPFQGRNL 405



to top

>MRD1_USTMA (Q4PC17) Multiple RNA-binding domain-containing protein 1|
          Length = 858

 Score = 47.4 bits (111), Expect = 2e-05
 Identities = 31/111 (27%), Positives = 58/111 (52%), Gaps = 3/111 (2%)
 Frame = +2

Query: 8   EGEEPKMDRRAASHGDYDEQ--DRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRI 181
           E ++ +M R+A    + D++  D+ ++   +F+  LP +A+   +   F + G +  + I
Sbjct: 286 ECKQAEMQRKAQQAAEKDQKLVDQIMESGRLFIRNLPFAASGDEILAFFESFGTVKQVHI 345

Query: 182 MKD-QNGVSKGFGFVRFAERECAYIAKRQKNGVELQGKRLAVDLSLDQDTL 331
             D Q   SKG  FV F++   A  A R K+G   QG+ L +  ++++D L
Sbjct: 346 PLDKQTKASKGLAFVSFSDPAHALAAYRAKDGSTFQGRLLHLLPAVNKDAL 396



 Score = 46.6 bits (109), Expect = 3e-05
 Identities = 24/76 (31%), Positives = 42/76 (55%)
 Frame = +2

Query: 86  AEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKRQ 265
           + + V GLP   T+  LRE FS  G + D+++M+  +G S+ FGFV +   + A  A   
Sbjct: 2   SRLIVRGLPSYLTDARLREHFSQKGAVTDVKLMRRPDGTSRKFGFVGYRSEQEAQQALDY 61

Query: 266 KNGVELQGKRLAVDLS 313
            N   +   R++++L+
Sbjct: 62  FNRTFIDTSRISIELA 77



 Score = 42.4 bits (98), Expect = 6e-04
 Identities = 21/75 (28%), Positives = 40/75 (53%)
 Frame = +2

Query: 89  EVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKRQK 268
           ++ +  LP  AT+  +R++FS+ G++  +R+ K  +  ++GFGFV ++    A  A    
Sbjct: 720 KILIKNLPFEATKRDIRDLFSSQGQLKSVRLPKKFDNTTRGFGFVEYSTVREAQSAMEAL 779

Query: 269 NGVELQGKRLAVDLS 313
               L G+ L +  S
Sbjct: 780 KHTHLLGRHLVLQWS 794



to top

>NUCL_MACFA (Q4R4J7) Nucleolin|
          Length = 710

 Score = 47.4 bits (111), Expect = 2e-05
 Identities = 32/104 (30%), Positives = 53/104 (50%), Gaps = 10/104 (9%)
 Frame = +2

Query: 98  VGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKRQKNGV 277
           +  L  SATE TL+E+F    +   +++ ++QNG SKG+ F+ FA  E A  A    N  
Sbjct: 490 LSNLSYSATEETLQEVFE---KATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKR 546

Query: 278 ELQGKRLAVDL----------SLDQDTLFFGNLCKEWSAEEFEE 379
           E++G+ + ++L          S    TLF   L ++ + E  +E
Sbjct: 547 EIEGRAIRLELQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKE 590



 Score = 45.8 bits (107), Expect = 5e-05
 Identities = 30/73 (41%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
 Frame = +2

Query: 92  VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKD-QNGVSKGFGFVRFAERECAYIAKRQK 268
           +FV GL    TE TL+E F      V  RI+ D + G SKGFGFV F   E A  AK   
Sbjct: 574 LFVKGLSEDTTEETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAM 630

Query: 269 NGVELQGKRLAVD 307
              E+ G ++ +D
Sbjct: 631 EDGEIDGNKVTLD 643



to top

>PABP5_PONPY (P60050) Polyadenylate-binding protein 5 (Poly(A)-binding protein|
           5) (PABP 5)
          Length = 382

 Score = 47.4 bits (111), Expect = 2e-05
 Identities = 26/77 (33%), Positives = 39/77 (50%)
 Frame = +2

Query: 74  RVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYI 253
           R     VFV  +     +  L+E+F   G    +++++D +G SKGFGFVR+   E A  
Sbjct: 195 RATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQK 254

Query: 254 AKRQKNGVELQGKRLAV 304
           A    +G  + GK L V
Sbjct: 255 AVLDLHGKSIDGKVLYV 271



 Score = 41.6 bits (96), Expect = 0.001
 Identities = 25/82 (30%), Positives = 41/82 (50%)
 Frame = +2

Query: 59  DEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAER 238
           D++ R+     +F+  L +S     L  +FS  G I+  +++ D NG SKG+ +V F   
Sbjct: 97  DDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSL 155

Query: 239 ECAYIAKRQKNGVELQGKRLAV 304
             A  A    NGV L  +++ V
Sbjct: 156 AAANRAIWHMNGVRLNNRQVYV 177



to top

>PABP5_PANTR (P60049) Polyadenylate-binding protein 5 (Poly(A)-binding protein|
           5) (PABP 5)
          Length = 382

 Score = 47.4 bits (111), Expect = 2e-05
 Identities = 26/77 (33%), Positives = 39/77 (50%)
 Frame = +2

Query: 74  RVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYI 253
           R     VFV  +     +  L+E+F   G    +++++D +G SKGFGFVR+   E A  
Sbjct: 195 RATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQK 254

Query: 254 AKRQKNGVELQGKRLAV 304
           A    +G  + GK L V
Sbjct: 255 AVLDLHGKSIDGKVLYV 271



 Score = 41.6 bits (96), Expect = 0.001
 Identities = 25/82 (30%), Positives = 41/82 (50%)
 Frame = +2

Query: 59  DEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAER 238
           D++ R+     +F+  L +S     L  +FS  G I+  +++ D NG SKG+ +V F   
Sbjct: 97  DDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSL 155

Query: 239 ECAYIAKRQKNGVELQGKRLAV 304
             A  A    NGV L  +++ V
Sbjct: 156 AAANRAIWHMNGVRLNNRQVYV 177



to top

>PABP5_MACMU (Q7JGR2) Polyadenylate-binding protein 5 (Poly(A)-binding protein|
           5) (PABP 5)
          Length = 382

 Score = 47.4 bits (111), Expect = 2e-05
 Identities = 26/77 (33%), Positives = 39/77 (50%)
 Frame = +2

Query: 74  RVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYI 253
           R     VFV  +     +  L+E+F   G    +++++D +G SKGFGFVR+   E A  
Sbjct: 195 RATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQK 254

Query: 254 AKRQKNGVELQGKRLAV 304
           A    +G  + GK L V
Sbjct: 255 AVLDLHGKSIDGKVLYV 271



 Score = 41.6 bits (96), Expect = 0.001
 Identities = 25/82 (30%), Positives = 41/82 (50%)
 Frame = +2

Query: 59  DEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAER 238
           D++ R+     +F+  L +S     L  +FS  G I+  +++ D NG SKG+ +V F   
Sbjct: 97  DDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSL 155

Query: 239 ECAYIAKRQKNGVELQGKRLAV 304
             A  A    NGV L  +++ V
Sbjct: 156 AAANRAIWHMNGVRLNNRQVYV 177



to top

>PABP5_HYLLA (P60048) Polyadenylate-binding protein 5 (Poly(A)-binding protein|
           5) (PABP 5)
          Length = 382

 Score = 47.4 bits (111), Expect = 2e-05
 Identities = 26/77 (33%), Positives = 39/77 (50%)
 Frame = +2

Query: 74  RVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYI 253
           R     VFV  +     +  L+E+F   G    +++++D +G SKGFGFVR+   E A  
Sbjct: 195 RATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQK 254

Query: 254 AKRQKNGVELQGKRLAV 304
           A    +G  + GK L V
Sbjct: 255 AVLDLHGKSIDGKVLYV 271



 Score = 41.6 bits (96), Expect = 0.001
 Identities = 25/82 (30%), Positives = 41/82 (50%)
 Frame = +2

Query: 59  DEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAER 238
           D++ R+     +F+  L +S     L  +FS  G I+  +++ D NG SKG+ +V F   
Sbjct: 97  DDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSL 155

Query: 239 ECAYIAKRQKNGVELQGKRLAV 304
             A  A    NGV L  +++ V
Sbjct: 156 AAANRAIWHMNGVRLNNRQVYV 177



to top

>PABP5_HUMAN (Q96DU9) Polyadenylate-binding protein 5 (Poly(A)-binding protein|
           5) (PABP 5)
          Length = 382

 Score = 47.4 bits (111), Expect = 2e-05
 Identities = 26/77 (33%), Positives = 39/77 (50%)
 Frame = +2

Query: 74  RVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYI 253
           R     VFV  +     +  L+E+F   G    +++++D +G SKGFGFVR+   E A  
Sbjct: 195 RATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQK 254

Query: 254 AKRQKNGVELQGKRLAV 304
           A    +G  + GK L V
Sbjct: 255 AVLDLHGKSIDGKVLYV 271



 Score = 41.6 bits (96), Expect = 0.001
 Identities = 25/82 (30%), Positives = 41/82 (50%)
 Frame = +2

Query: 59  DEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAER 238
           D++ R+     +F+  L +S     L  +FS  G I+  +++ D NG SKG+ +V F   
Sbjct: 97  DDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSL 155

Query: 239 ECAYIAKRQKNGVELQGKRLAV 304
             A  A    NGV L  +++ V
Sbjct: 156 AAANRAIWHMNGVRLNNRQVYV 177



to top

>PABP5_GORGO (P60047) Polyadenylate-binding protein 5 (Poly(A)-binding protein|
           5) (PABP 5)
          Length = 382

 Score = 47.4 bits (111), Expect = 2e-05
 Identities = 26/77 (33%), Positives = 39/77 (50%)
 Frame = +2

Query: 74  RVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYI 253
           R     VFV  +     +  L+E+F   G    +++++D +G SKGFGFVR+   E A  
Sbjct: 195 RATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQK 254

Query: 254 AKRQKNGVELQGKRLAV 304
           A    +G  + GK L V
Sbjct: 255 AVLDLHGKSIDGKVLYV 271



 Score = 41.6 bits (96), Expect = 0.001
 Identities = 25/82 (30%), Positives = 41/82 (50%)
 Frame = +2

Query: 59  DEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAER 238
           D++ R+     +F+  L +S     L  +FS  G I+  +++ D NG SKG+ +V F   
Sbjct: 97  DDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSL 155

Query: 239 ECAYIAKRQKNGVELQGKRLAV 304
             A  A    NGV L  +++ V
Sbjct: 156 AAANRAIWHMNGVRLNNRQVYV 177



to top

>NUCL_PONPY (Q5RF26) Nucleolin|
          Length = 711

 Score = 47.4 bits (111), Expect = 2e-05
 Identities = 32/104 (30%), Positives = 53/104 (50%), Gaps = 10/104 (9%)
 Frame = +2

Query: 98  VGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKRQKNGV 277
           +  L  SATE TL+E+F    +   +++ ++QNG SKG+ F+ FA  E A  A    N  
Sbjct: 491 LSNLSYSATEETLQEVFE---KATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKR 547

Query: 278 ELQGKRLAVDL----------SLDQDTLFFGNLCKEWSAEEFEE 379
           E++G+ + ++L          S    TLF   L ++ + E  +E
Sbjct: 548 EIEGRAIRLELQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKE 591



 Score = 45.8 bits (107), Expect = 5e-05
 Identities = 30/73 (41%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
 Frame = +2

Query: 92  VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKD-QNGVSKGFGFVRFAERECAYIAKRQK 268
           +FV GL    TE TL+E F      V  RI+ D + G SKGFGFV F   E A  AK   
Sbjct: 575 LFVKGLSEDTTEETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAM 631

Query: 269 NGVELQGKRLAVD 307
              E+ G ++ +D
Sbjct: 632 EDGEIDGNKVTLD 644



to top

>ROC1_ARATH (Q9ZUU4) Putative ribonucleoprotein At2g37220, chloroplast|
           precursor
          Length = 289

 Score = 47.0 bits (110), Expect = 2e-05
 Identities = 25/75 (33%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
 Frame = +2

Query: 83  GAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQN-GVSKGFGFVRFAERECAYIAK 259
           G  V+VG L     +  L  +FS  G++V+ R++ D++ G SKGFGFV +   +    A 
Sbjct: 203 GNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAI 262

Query: 260 RQKNGVELQGKRLAV 304
           +  +G +L G+++ V
Sbjct: 263 KSLDGADLDGRQIRV 277



 Score = 46.2 bits (108), Expect = 4e-05
 Identities = 25/74 (33%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
 Frame = +2

Query: 89  EVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQ-NGVSKGFGFVRFAERECAYIAKRQ 265
           ++FVG LP +     L ++F + G +  + ++ D+  G S+GFGFV  +       A +Q
Sbjct: 92  KLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQ 151

Query: 266 KNGVELQGKRLAVD 307
            NG EL G+ L V+
Sbjct: 152 FNGYELDGRPLRVN 165



to top

>RBM11_HUMAN (P57052) Putative RNA-binding protein 11 (RNA-binding motif protein|
           11)
          Length = 281

 Score = 47.0 bits (110), Expect = 2e-05
 Identities = 27/71 (38%), Positives = 34/71 (47%)
 Frame = +2

Query: 92  VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKRQKN 271
           VFVG L     E  L E+F   G +  + I KD+ G  K FGFV F   E    A    N
Sbjct: 12  VFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLN 71

Query: 272 GVELQGKRLAV 304
           G+ L G+ + V
Sbjct: 72  GIRLYGRPINV 82



to top

>RBM8A_DROME (Q9V535) RNA-binding protein 8A (Protein tsunagi)|
          Length = 165

 Score = 47.0 bits (110), Expect = 2e-05
 Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
 Frame = +2

Query: 71  RRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQN-GVSKGFGFVRFAERECA 247
           R V+G  +FV  +   A E  ++E F   GEI ++ +  D+  G SKG+  V +   + A
Sbjct: 68  RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQA 127

Query: 248 YIAKRQKNGVELQGKRLAVD 307
             AK   NG E+ G+ + VD
Sbjct: 128 LAAKEALNGAEIMGQTIQVD 147



to top

>NSR1_YEAST (P27476) Nuclear localization sequence-binding protein (P67)|
          Length = 414

 Score = 47.0 bits (110), Expect = 2e-05
 Identities = 38/167 (22%), Positives = 72/167 (43%), Gaps = 20/167 (11%)
 Frame = +2

Query: 2   RHEGEEPKMDRRAASHGDYDEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRI 181
           + + E+ + +    S     + +   + A +FVG L  S  +  L++ F   G ++  R+
Sbjct: 140 KRKSEDAEEEEDEESSNKKQKNEETEEPATIFVGRLSWSIDDEWLKKEFEHIGGVIGARV 199

Query: 182 MKDQN-GVSKGFGFVRFAERECAYIAKRQKNGVELQGKRLAVDLSLDQ------------ 322
           + ++    S+G+G+V F  +  A  A ++  G E+ G+ +  D+S  +            
Sbjct: 200 IYERGTDRSRGYGYVDFENKSYAEKAIQEMQGKEIDGRPINCDMSTSKPAGNNDRAKKFG 259

Query: 323 -------DTLFFGNLCKEWSAEEFEELIHKTFKDVISVDLAMAPNLD 442
                  DTLF GNL      +   EL  K   +V+SV +   P  +
Sbjct: 260 DTPSEPSDTLFLGNLSFNADRDAIFELFAK-HGEVVSVRIPTHPETE 305



 Score = 37.7 bits (86), Expect = 0.015
 Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
 Frame = +2

Query: 92  VFVGGLPRSATEGTLREIFSTCGEIVDLRI-MKDQNGVSKGFGFVRFAERECAYIAKRQK 268
           +F+G L  +A    + E+F+  GE+V +RI    +    KGFG+V+F+  E A  A    
Sbjct: 269 LFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDAL 328

Query: 269 NGVELQGKRLAVDLS 313
            G  +  + + +D S
Sbjct: 329 QGEYIDNRPVRLDFS 343



to top

>PABPB_XENLA (Q6IP09) Polyadenylate-binding protein 1-B (Poly(A)-binding protein|
           1-B) (Cytoplasmic poly(A)-binding protein 1-B) (PABP-B)
           (PABP 1-B) (xPABP1-B)
          Length = 633

 Score = 47.0 bits (110), Expect = 2e-05
 Identities = 27/82 (32%), Positives = 44/82 (53%)
 Frame = +2

Query: 59  DEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAER 238
           D   R+     +F+  L +S     L + FS  G I+  +++ D+NG SKG+GFV F  +
Sbjct: 90  DPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQ 148

Query: 239 ECAYIAKRQKNGVELQGKRLAV 304
           E A  A  + NG+ L  +++ V
Sbjct: 149 EAAERAIDKMNGMLLNDRKVFV 170



 Score = 46.6 bits (109), Expect = 3e-05
 Identities = 24/71 (33%), Positives = 36/71 (50%)
 Frame = +2

Query: 92  VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKRQKN 271
           V++        +  L+E F   G  + +++M D +G S+GFGFV F   E A  A    N
Sbjct: 193 VYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDDHGKSRGFGFVSFERHEDAQKAVDDMN 252

Query: 272 GVELQGKRLAV 304
           G +L GK + V
Sbjct: 253 GKDLNGKAIFV 263



 Score = 42.7 bits (99), Expect = 5e-04
 Identities = 33/103 (32%), Positives = 53/103 (51%), Gaps = 4/103 (3%)
 Frame = +2

Query: 17  EPKMDRRAASHGDYDE--QDR--RVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIM 184
           + K++R+      +++  QDR  R +G  ++V  L     +  LR+ F+  G I   ++M
Sbjct: 267 QKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFTPFGSITSAKVM 326

Query: 185 KDQNGVSKGFGFVRFAERECAYIAKRQKNGVELQGKRLAVDLS 313
            +  G SKGFGFV F+  E A  A  + NG  +  K L V L+
Sbjct: 327 ME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368



to top

>DAZL_MOUSE (Q64368) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted|
           in azoospermia-like 1)
          Length = 298

 Score = 47.0 bits (110), Expect = 2e-05
 Identities = 25/80 (31%), Positives = 44/80 (55%)
 Frame = +2

Query: 92  VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKRQKN 271
           VFVGG+     E  +R  F+  G + +++I+ D+ GVSKG+GFV F       + K  ++
Sbjct: 42  VFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYND--VDVQKIVES 99

Query: 272 GVELQGKRLAVDLSLDQDTL 331
            +   GK+L +  ++ +  L
Sbjct: 100 QINFHGKKLKLGPAIRKQNL 119



to top

>U2AF2_CAEBR (P90727) Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor|
           65 kDa subunit) (U2 snRNP auxiliary factor large
           subunit) (U2AF65)
          Length = 488

 Score = 46.6 bits (109), Expect = 3e-05
 Identities = 24/80 (30%), Positives = 40/80 (50%)
 Frame = +2

Query: 89  EVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKRQK 268
           ++F+GGLP   TE  ++E+  + G +    +  D  G SKG+ F  + +      A    
Sbjct: 283 KIFIGGLPNYLTEDQVKELLCSFGPLKAFSLNVDSQGNSKGYAFAEYLDPTLTDQAIAGL 342

Query: 269 NGVELQGKRLAVDLSLDQDT 328
           NG++L  K+L V L+    T
Sbjct: 343 NGMQLGDKQLVVQLACANQT 362



to top

>MRD1_ASPFU (Q4WJT7) Multiple RNA-binding domain-containing protein 1|
          Length = 825

 Score = 46.6 bits (109), Expect = 3e-05
 Identities = 29/105 (27%), Positives = 55/105 (52%), Gaps = 7/105 (6%)
 Frame = +2

Query: 11  GEEPKMDRRAASHGDYDEQ--DRRVK----GAEVFVGGLPRSATEGTLREIFSTCGEIVD 172
           G +   D +AA     +E+  D  ++     + +FV  LP  A+E  L  +FS  G+I +
Sbjct: 270 GAQHSDDDKAAVESSVEEEEVDTNIEHIRLSSRLFVRNLPYDASESDLEPVFSKFGKIEE 329

Query: 173 LRIMKD-QNGVSKGFGFVRFAERECAYIAKRQKNGVELQGKRLAV 304
           + +  D ++  SKGF +V++ E + A  A ++ +G   QG+ + +
Sbjct: 330 IHVAFDTRSTTSKGFAYVQYIEPDAAVQAYKELDGKHFQGRLMHI 374



 Score = 39.7 bits (91), Expect = 0.004
 Identities = 20/78 (25%), Positives = 39/78 (50%)
 Frame = +2

Query: 89  EVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKRQK 268
           ++ +  LP  AT+  +R +F   G++  +R+ K  +  ++GFGF  F     A  A    
Sbjct: 703 KIIIKNLPFQATKKDVRSLFGAYGQLRSVRVPKKFDRSARGFGFADFVSAREAENAMDAL 762

Query: 269 NGVELQGKRLAVDLSLDQ 322
               L G+RL ++ + ++
Sbjct: 763 KNTHLLGRRLVLEFANEE 780



 Score = 34.7 bits (78), Expect = 0.13
 Identities = 23/84 (27%), Positives = 40/84 (47%)
 Frame = +2

Query: 77  VKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIA 256
           ++   VFV GLP + T   LR  FS+  +I D  ++       +  GFV F   E A  A
Sbjct: 1   MENTRVFVSGLPPTFTNDQLRMHFSSRFQITDAHVLP-----KRRIGFVGFKSSEAAQQA 55

Query: 257 KRQKNGVELQGKRLAVDLSLDQDT 328
               N   ++  +++V+++   D+
Sbjct: 56  ASYFNKTYVKMSKISVEIAKPIDS 79



to top

>ROC1_SPIOL (P28644) 28 kDa ribonucleoprotein, chloroplast (28RNP)|
          Length = 233

 Score = 46.2 bits (108), Expect = 4e-05
 Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 1/99 (1%)
 Frame = +2

Query: 20  PKMDRRAASHGDYDEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKD-QN 196
           P+     A  GD++   R      V+VG LP       L ++FS  G++V  R++ D + 
Sbjct: 133 PRGSPERAPRGDFEPSCR------VYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRET 186

Query: 197 GVSKGFGFVRFAERECAYIAKRQKNGVELQGKRLAVDLS 313
           G S+GFGFV  +       A    +G  L G+ + V+++
Sbjct: 187 GRSRGFGFVTMSSESEVNDAIAALDGQTLDGRAVRVNVA 225



 Score = 39.7 bits (91), Expect = 0.004
 Identities = 27/76 (35%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
 Frame = +2

Query: 86  AEVFVGGLPRSATEGTLREIFSTCG--EIVDLRIMKDQNGVSKGFGFVRFAERECAYIAK 259
           A++FVG LP       L  IF   G  EI ++ I   +   S+GFGFV  +  E A  A 
Sbjct: 55  AKLFVGNLPYDVDSEKLAGIFDAAGVVEIAEV-IYNRETDRSRGFGFVTMSTVEEAEKAV 113

Query: 260 RQKNGVELQGKRLAVD 307
              NG ++ G++L V+
Sbjct: 114 ELLNGYDMDGRQLTVN 129



to top

>SQD_DROME (Q08473) RNA-binding protein squid (Heterogeneous nuclear|
           ribonucleoprotein 40) (HNRNP 40)
          Length = 344

 Score = 46.2 bits (108), Expect = 4e-05
 Identities = 41/146 (28%), Positives = 63/146 (43%), Gaps = 1/146 (0%)
 Frame = +2

Query: 29  DRRAASHGDYDEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKD-QNGVS 205
           D ++A+ G  D+ DR++     FVGGL    TE  LR+ F   GEI  + +  D Q G S
Sbjct: 43  DNQSAASGQRDD-DRKL-----FVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRS 96

Query: 206 KGFGFVRFAERECAYIAKRQKNGVELQGKRLAVDLSLDQDTLFFGNLCKEWSAEEFEELI 385
           +GF F+ F   E           +    K            +F G L  E S EE +   
Sbjct: 97  RGFAFIVFTNTEAIDKVSAADEHIINSKKVDPKKAKARHGKIFVGGLTTEISDEEIKTYF 156

Query: 386 HKTFKDVISVDLAMAPNLDSSTSKRR 463
            + F +++ V++      D   S+R+
Sbjct: 157 GQ-FGNIVEVEMP----FDKQKSQRK 177



to top

>TIA1_MOUSE (P52912) Nucleolysin TIA-1 (RNA-binding protein TIA-1)|
          Length = 386

 Score = 46.2 bits (108), Expect = 4e-05
 Identities = 24/66 (36%), Positives = 37/66 (56%)
 Frame = +2

Query: 92  VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKRQKN 271
           V+ GG+    TE  +R+ FS  G+I+++R+  D     KG+ FVRF+  E A  A    N
Sbjct: 216 VYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD-----KGYSFVRFSSHESAAHAIVSVN 270

Query: 272 GVELQG 289
           G  ++G
Sbjct: 271 GTTIEG 276



 Score = 45.1 bits (105), Expect = 9e-05
 Identities = 30/94 (31%), Positives = 43/94 (45%), Gaps = 1/94 (1%)
 Frame = +2

Query: 20  PKMDRRAASHGDYDEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQ-N 196
           P   ++  S        R      VFVG L    T   ++  F+  G I D R++KD   
Sbjct: 84  PSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMAT 143

Query: 197 GVSKGFGFVRFAERECAYIAKRQKNGVELQGKRL 298
           G SKG+GFV F  +  A  A +Q  G  L G+++
Sbjct: 144 GKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQI 177



 Score = 38.1 bits (87), Expect = 0.011
 Identities = 22/72 (30%), Positives = 37/72 (51%)
 Frame = +2

Query: 92  VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKRQKN 271
           ++VG L R  TE  + ++FS  G   + +++ D  G +  + FV F E   A  A    N
Sbjct: 9   LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAG-NDPYCFVEFHEHRHAAAALAAMN 67

Query: 272 GVELQGKRLAVD 307
           G ++ GK + V+
Sbjct: 68  GRKIMGKEVKVN 79



to top

>NUCL_RAT (P13383) Nucleolin (Protein C23)|
          Length = 712

 Score = 46.2 bits (108), Expect = 4e-05
 Identities = 35/148 (23%), Positives = 68/148 (45%), Gaps = 10/148 (6%)
 Frame = +2

Query: 5   HEGEEPKMDRRAASHGDYDEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIM 184
           + GE+ +   R   +  +  + + +      +  L  SATE TL+E+F    +   +++ 
Sbjct: 466 YTGEKGQRQERTGKNSTWSGESKTL-----VLSNLSYSATEETLQEVFE---KATFIKVP 517

Query: 185 KDQNGVSKGFGFVRFAERECAYIAKRQKNGVELQGKRLAVDL----------SLDQDTLF 334
           ++ +G SKG+ F+ FA  E A  A    N +E++G+ + ++L          S    TLF
Sbjct: 518 QNPHGKSKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRLELQGPRGSPNARSQPSKTLF 577

Query: 335 FGNLCKEWSAEEFEELIHKTFKDVISVD 418
              L ++ + E  +E    + +  I  D
Sbjct: 578 VKGLSEDTTEETLKESFEGSVRARIVTD 605



 Score = 45.8 bits (107), Expect = 5e-05
 Identities = 30/73 (41%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
 Frame = +2

Query: 92  VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKD-QNGVSKGFGFVRFAERECAYIAKRQK 268
           +FV GL    TE TL+E F      V  RI+ D + G SKGFGFV F   E A  AK   
Sbjct: 576 LFVKGLSEDTTEETLKESFEGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAM 632

Query: 269 NGVELQGKRLAVD 307
              E+ G ++ +D
Sbjct: 633 EDGEIDGNKVTLD 645



 Score = 34.7 bits (78), Expect = 0.13
 Identities = 21/79 (26%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
 Frame = +2

Query: 71  RRVKGAEVFVG-GLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECA 247
           ++V+ A   +   L  + TE  L+E+F    + V++R++  Q+G SKG  ++ F     A
Sbjct: 390 KKVRAARTLLAKNLSFNITEDELKEVFE---DAVEIRLVS-QDGRSKGIAYIEFKSEADA 445

Query: 248 YIAKRQKNGVELQGKRLAV 304
                +K G E+ G+ +++
Sbjct: 446 EKNLEEKQGAEIDGRSVSL 464



to top

>ROC2_ARATH (Q43349) 29 kDa ribonucleoprotein, chloroplast precursor|
           (RNA-binding protein cp29)
          Length = 342

 Score = 45.8 bits (107), Expect = 5e-05
 Identities = 24/75 (32%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
 Frame = +2

Query: 83  GAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQN-GVSKGFGFVRFAERECAYIAK 259
           G  ++VG L     +  L  +F+  G++V+ R++ D++ G SKGFGFV  +  +    A 
Sbjct: 256 GNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAI 315

Query: 260 RQKNGVELQGKRLAV 304
              NG +L G+++ V
Sbjct: 316 NSLNGADLDGRQIRV 330



 Score = 42.4 bits (98), Expect = 6e-04
 Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
 Frame = +2

Query: 89  EVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQ-NGVSKGFGFVRFAERECAYIAKRQ 265
           ++FVG L  +     L ++F + G +  + ++ D+  G S+GFGFV  +       A +Q
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQ 159

Query: 266 KNGVELQGKRLAVD 307
            NG E +G+ L V+
Sbjct: 160 FNGYEFEGRPLRVN 173



to top

>RBM8A_MOUSE (Q9CWZ3) RNA-binding protein 8A (RNA-binding motif protein 8A)|
           (Ribonucleoprotein RBM8A)
          Length = 174

 Score = 45.8 bits (107), Expect = 5e-05
 Identities = 34/101 (33%), Positives = 51/101 (50%), Gaps = 10/101 (9%)
 Frame = +2

Query: 35  RAASHGDYD--EQD-------RRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMK 187
           RA    DYD  EQD       R V+G  +FV G+   ATE  + + F+  GEI ++ +  
Sbjct: 47  RARMREDYDSVEQDGDEPGPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNL 106

Query: 188 D-QNGVSKGFGFVRFAERECAYIAKRQKNGVELQGKRLAVD 307
           D + G  KG+  V +   + A  A    NG +L G+ ++VD
Sbjct: 107 DRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 147



to top

>RBM8A_HUMAN (Q9Y5S9) RNA-binding protein 8A (RNA-binding motif protein 8A)|
           (Ribonucleoprotein RBM8A) (RNA-binding protein Y14)
           (Binder of OVCA1-1) (BOV-1)
          Length = 174

 Score = 45.8 bits (107), Expect = 5e-05
 Identities = 34/101 (33%), Positives = 51/101 (50%), Gaps = 10/101 (9%)
 Frame = +2

Query: 35  RAASHGDYD--EQD-------RRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMK 187
           RA    DYD  EQD       R V+G  +FV G+   ATE  + + F+  GEI ++ +  
Sbjct: 47  RARMREDYDSVEQDGDEPGPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNL 106

Query: 188 D-QNGVSKGFGFVRFAERECAYIAKRQKNGVELQGKRLAVD 307
           D + G  KG+  V +   + A  A    NG +L G+ ++VD
Sbjct: 107 DRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 147



to top

>NUCL_MOUSE (P09405) Nucleolin (Protein C23)|
          Length = 706

 Score = 45.8 bits (107), Expect = 5e-05
 Identities = 30/73 (41%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
 Frame = +2

Query: 92  VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKD-QNGVSKGFGFVRFAERECAYIAKRQK 268
           +FV GL    TE TL+E F      V  RI+ D + G SKGFGFV F   E A  AK   
Sbjct: 570 LFVKGLSEDTTEETLKESFEGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAM 626

Query: 269 NGVELQGKRLAVD 307
              E+ G ++ +D
Sbjct: 627 EDGEIDGNKVTLD 639



 Score = 34.7 bits (78), Expect = 0.13
 Identities = 29/125 (23%), Positives = 54/125 (43%), Gaps = 18/125 (14%)
 Frame = +2

Query: 71  RRVKGAEVFVG-GLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECA 247
           ++V+ A   +   L  + TE  L+E+F    + +++R++  Q+G SKG  ++ F     A
Sbjct: 388 KKVRAARTLLAKNLSFNITEDELKEVFE---DAMEIRLVS-QDGKSKGIAYIEFKSEADA 443

Query: 248 YIAKRQKNGVELQGKRLAV-----------------DLSLDQDTLFFGNLCKEWSAEEFE 376
                +K G E+ G+ +++                   S +  TL   NL    + E  E
Sbjct: 444 EKNLEEKQGAEIDGRSVSLYYTGEKGQRQERTGKTSTWSGESKTLVLSNLSYSATKETLE 503

Query: 377 ELIHK 391
           E+  K
Sbjct: 504 EVFEK 508



to top

>U2AF2_CAEEL (P90978) Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor|
           65 kDa subunit) (U2 snRNP auxiliary factor large
           subunit) (U2AF65)
          Length = 496

 Score = 45.8 bits (107), Expect = 5e-05
 Identities = 23/75 (30%), Positives = 39/75 (52%)
 Frame = +2

Query: 89  EVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKRQK 268
           ++F+GGLP   TE  ++E+  + G +    +  D  G SKG+ F  + +      A    
Sbjct: 292 KIFIGGLPNYLTEDQVKELLCSFGPLKAFSLNVDSQGNSKGYAFAEYLDPTLTDQAIAGL 351

Query: 269 NGVELQGKRLAVDLS 313
           NG++L  K+L V L+
Sbjct: 352 NGMQLGDKQLVVQLA 366



to top

>RBM19_HUMAN (Q9Y4C8) Probable RNA-binding protein 19 (RNA-binding motif protein|
            19)
          Length = 960

 Score = 45.4 bits (106), Expect = 7e-05
 Identities = 39/138 (28%), Positives = 64/138 (46%), Gaps = 6/138 (4%)
 Frame = +2

Query: 71   RRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVS--KGFGFVRFAEREC 244
            R+   +++ V  +P  A    +RE+FST GE+  +R+ K   G    +GFGFV F  ++ 
Sbjct: 827  RKQTTSKILVRNIPFQAHSREIRELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFLTKQ- 885

Query: 245  AYIAKRQKNGV----ELQGKRLAVDLSLDQDTLFFGNLCKEWSAEEFEELIHKTFKDVIS 412
               AKR  N +     L G+RL ++ +  + TL      +  +A  F E   K    V+ 
Sbjct: 886  --DAKRAFNALCHSTHLYGRRLVLEWADSEVTL---QALRRKTAAHFHEPPKKKRSVVLD 940

Query: 413  VDLAMAPNLDSSTSKRRL 466
              L      DS + ++ L
Sbjct: 941  EILEQLEGSDSDSEEQTL 958



 Score = 42.4 bits (98), Expect = 6e-04
 Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
 Frame = +2

Query: 50  GDYDEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQ-NGVSKGFGFVR 226
           G+ +E++   +   +FV  LP ++TE  L ++FS  G + +L    D      KGF F+ 
Sbjct: 390 GENEEEEDLAESGRLFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFIT 449

Query: 227 FAERECAYIAKRQKNGVELQGKRLAV 304
           F   E A  A  + +G   QG+ L V
Sbjct: 450 FMFPEHAVKAYSEVDGQVFQGRMLHV 475



to top

>DND1_HUMAN (Q8IYX4) Dead end protein homolog 1 (RNA-binding motif,|
           single-stranded interacting protein 4)
          Length = 353

 Score = 45.4 bits (106), Expect = 7e-05
 Identities = 20/58 (34%), Positives = 34/58 (58%)
 Frame = +2

Query: 83  GAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIA 256
           G+EVF+G LP+   E  L  +F   G + + R+M   +G+++GF + R++ R  A  A
Sbjct: 57  GSEVFIGRLPQDVYEHQLIPLFQRVGRLYEFRLMMTFSGLNRGFAYARYSSRRGAQAA 114



to top

>COVA1_HUMAN (Q16206) Tumor-associated hydroquinone oxidase (tNOX) (Cytosolic|
           ovarian carcinoma antigen 1) (APK1 antigen) [Includes:
           Hydroquinone [NADH] oxidase (EC 1.-.-.-); Protein
           disulfide-thiol oxidoreductase (EC 1.-.-.-)]
          Length = 610

 Score = 45.4 bits (106), Expect = 7e-05
 Identities = 35/101 (34%), Positives = 50/101 (49%), Gaps = 8/101 (7%)
 Frame = +2

Query: 92  VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAER----ECAYIA- 256
           VFVGGLP + TE  + E+F  CGEI+ +R  K      K F  +RFAE     +  Y++ 
Sbjct: 130 VFVGGLPENGTEQIIVEVFEQCGEIIAIRKSK------KNFCHIRFAEEYMVDKALYLSG 183

Query: 257 KRQKNGVELQGK---RLAVDLSLDQDTLFFGNLCKEWSAEE 370
            R + G     K   RL VD +  +D L+      EW  ++
Sbjct: 184 YRIRLGSSTDKKDTGRLHVDFAQARDDLY------EWECKQ 218



to top

>CIRBP_XENLA (O93235) Cold-inducible RNA-binding protein (Glycine-rich|
           RNA-binding protein CIRP) (xCIRP)
          Length = 163

 Score = 45.4 bits (106), Expect = 7e-05
 Identities = 25/74 (33%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
 Frame = +2

Query: 89  EVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGV-SKGFGFVRFAERECAYIAKRQ 265
           ++F+GGL     E  L + F+  G I ++ ++KD+    S+GFGFV F   + A  A   
Sbjct: 6   KLFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAMMA 65

Query: 266 KNGVELQGKRLAVD 307
            NG  + G+++ VD
Sbjct: 66  MNGKSVDGRQIRVD 79



to top

>SXL_DROSU (Q24668) Protein sex-lethal|
          Length = 354

 Score = 45.4 bits (106), Expect = 7e-05
 Identities = 32/115 (27%), Positives = 53/115 (46%), Gaps = 7/115 (6%)
 Frame = +2

Query: 68  DRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKD-QNGVSKGFGFVRFAEREC 244
           D+R     + V  LP+  T+  L  +F   G I   RIM+D + G S G+ FV F     
Sbjct: 121 DQRSSNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSFGYAFVDFTSEMD 180

Query: 245 AYIAKRQKNGVELQGKRLAVDL------SLDQDTLFFGNLCKEWSAEEFEELIHK 391
           +  A +  NG+ ++ KRL V        S+    L+  NL +  + ++ + +  K
Sbjct: 181 SQRAIKVLNGITVRNKRLKVSYARPGGESIKDTNLYVTNLPRTITDDQLDTIFGK 235



to top

>TIA1_HUMAN (P31483) Nucleolysin TIA-1 isoform p40 (RNA-binding protein TIA-1)|
           (p40-TIA-1) [Contains: Nucleolysin TIA-1 isoform p15
           (p15-TIA-1)]
          Length = 386

 Score = 45.4 bits (106), Expect = 7e-05
 Identities = 30/94 (31%), Positives = 43/94 (45%), Gaps = 1/94 (1%)
 Frame = +2

Query: 20  PKMDRRAASHGDYDEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQ-N 196
           P   ++  S        R      VFVG L    T   ++  F+  G I D R++KD   
Sbjct: 84  PSSQKKDTSSSTVVSTQRSQNHFHVFVGDLSPQITTEDIKAAFAPFGRISDARVVKDMAT 143

Query: 197 GVSKGFGFVRFAERECAYIAKRQKNGVELQGKRL 298
           G SKG+GFV F  +  A  A +Q  G  L G+++
Sbjct: 144 GKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQI 177



 Score = 45.1 bits (105), Expect = 9e-05
 Identities = 24/66 (36%), Positives = 36/66 (54%)
 Frame = +2

Query: 92  VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKRQKN 271
           V+ GG+    TE  +R+ FS  G+I+++R+  D     KG+ FVRF   E A  A    N
Sbjct: 216 VYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD-----KGYSFVRFNSHESAAHAIVSVN 270

Query: 272 GVELQG 289
           G  ++G
Sbjct: 271 GTTIEG 276



 Score = 38.1 bits (87), Expect = 0.011
 Identities = 22/72 (30%), Positives = 37/72 (51%)
 Frame = +2

Query: 92  VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKRQKN 271
           ++VG L R  TE  + ++FS  G   + +++ D  G +  + FV F E   A  A    N
Sbjct: 9   LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAG-NDPYCFVEFHEHRHAAAALAAMN 67

Query: 272 GVELQGKRLAVD 307
           G ++ GK + V+
Sbjct: 68  GRKIMGKEVKVN 79



to top

>NAM8_YEAST (Q00539) Protein NAM8|
          Length = 523

 Score = 45.4 bits (106), Expect = 7e-05
 Identities = 33/112 (29%), Positives = 54/112 (48%), Gaps = 5/112 (4%)
 Frame = +2

Query: 23  KMDRRAASHGDYDEQDRRVKGAE---VFVGGLPRSATEGTLREIF-STCGEIVDLRIMKD 190
           K++   +S+ + +     VK      +FVG L  + TE  L E+F +        +I+ D
Sbjct: 139 KLNWATSSYSNSNNSLNNVKSGNNCSIFVGDLAPNVTESQLFELFINRYASTSHAKIVHD 198

Query: 191 Q-NGVSKGFGFVRFAERECAYIAKRQKNGVELQGKRLAVDLSLDQDTLFFGN 343
           Q  G+SKG+GFV+F   +   +A  +  GV L G+ + V  +  Q     GN
Sbjct: 199 QVTGMSKGYGFVKFTNSDEQQLALSEMQGVFLNGRAIKVGPTSGQQQHVSGN 250



 Score = 34.7 bits (78), Expect = 0.13
 Identities = 24/69 (34%), Positives = 32/69 (46%)
 Frame = +2

Query: 92  VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKRQKN 271
           VF+GGL    TE  LR  F   G IV ++I      V K  GFV++ +R  A  A     
Sbjct: 315 VFIGGLSSLVTEDELRAYFQPFGTIVYVKI-----PVGKCCGFVQYVDRLSAEAAIAGMQ 369

Query: 272 GVELQGKRL 298
           G  +   R+
Sbjct: 370 GFPIANSRV 378



to top

>HRB1_YEAST (P38922) Protein HRB1 (Protein TOM34)|
          Length = 429

 Score = 45.4 bits (106), Expect = 7e-05
 Identities = 30/101 (29%), Positives = 44/101 (43%)
 Frame = +2

Query: 2   RHEGEEPKMDRRAASHGDYDEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRI 181
           R +   P  + +     D  E     K  EV V  LP S     L++IF  CG +    +
Sbjct: 208 RQDNPPPSNNIKERKALDRGELRHNRKTHEVIVKNLPASVNWQALKDIFKECGNVAHADV 267

Query: 182 MKDQNGVSKGFGFVRFAERECAYIAKRQKNGVELQGKRLAV 304
             D +GVS G G V F + +  + A  + NG  ++G  L V
Sbjct: 268 ELDGDGVSTGSGTVSFYDIKDLHRAIEKYNGYSIEGNVLDV 308



 Score = 39.3 bits (90), Expect = 0.005
 Identities = 34/111 (30%), Positives = 49/111 (44%)
 Frame = +2

Query: 56  YDEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAE 235
           Y+E+  R     +FVG L   +T   L E FS  G++V   I+  + G  +G G V F  
Sbjct: 126 YEEKVNRNYSNSIFVGNLTYDSTPEDLTEFFSQIGKVVRADIITSR-GHHRGMGTVEFTN 184

Query: 236 RECAYIAKRQKNGVELQGKRLAVDLSLDQDTLFFGNLCKEWSAEEFEELIH 388
            +    A RQ +G     +++ V     QD     N  KE  A +  EL H
Sbjct: 185 SDDVDRAIRQYDGAFFMDRKIFV----RQDNPPPSNNIKERKALDRGELRH 231



to top

>COVA1_MOUSE (Q8R0Z2) Tumor-associated hydroquinone oxidase (tNOX) (Cytosolic|
           ovarian carcinoma antigen 1) (APK1 antigen) [Includes:
           Hydroquinone [NADH] oxidase (EC 1.-.-.-); Protein
           disulfide-thiol oxidoreductase (EC 1.-.-.-)]
          Length = 598

 Score = 45.4 bits (106), Expect = 7e-05
 Identities = 35/101 (34%), Positives = 50/101 (49%), Gaps = 8/101 (7%)
 Frame = +2

Query: 92  VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAER----ECAYIA- 256
           VFVGGLP + TE  + E+F  CGEI+ +R  K      K F  +RFAE     +  Y++ 
Sbjct: 101 VFVGGLPENGTEQIIVEVFEQCGEIIAIRKSK------KNFCHIRFAEEYMVDKALYLSG 154

Query: 257 KRQKNGVELQGK---RLAVDLSLDQDTLFFGNLCKEWSAEE 370
            R + G     K   RL VD +  +D L+      EW  ++
Sbjct: 155 YRIRLGSSTDKKDTGRLHVDFAQARDDLY------EWECKQ 189



to top

>TIAR_HUMAN (Q01085) Nucleolysin TIAR (TIA-1-related protein)|
          Length = 375

 Score = 45.1 bits (105), Expect = 9e-05
 Identities = 23/70 (32%), Positives = 38/70 (54%)
 Frame = +2

Query: 80  KGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAK 259
           K   V+ GG+    T+  +R+ FS  G+I+++R+  +     KG+ FVRF+  E A  A 
Sbjct: 203 KNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE-----KGYSFVRFSTHESAAHAI 257

Query: 260 RQKNGVELQG 289
              NG  ++G
Sbjct: 258 VSVNGTTIEG 267



 Score = 41.6 bits (96), Expect = 0.001
 Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
 Frame = +2

Query: 92  VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQ-NGVSKGFGFVRFAERECAYIAKRQK 268
           VFVG L    T   ++  F+  G+I D R++KD   G SKG+GFV F  +  A  A    
Sbjct: 99  VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 158

Query: 269 NGVELQGKRL 298
            G  L G+++
Sbjct: 159 GGQWLGGRQI 168



 Score = 35.0 bits (79), Expect = 0.097
 Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 10/105 (9%)
 Frame = +2

Query: 92  VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKRQKN 271
           ++VG L R  TE  + ++FS  G     +++ +    +  + FV F E   A  A    N
Sbjct: 11  LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS-NDPYCFVEFYEHRDAAAALAAMN 69

Query: 272 GVELQGKRLAVD-----LSLDQDT-----LFFGNLCKEWSAEEFE 376
           G ++ GK + V+      S  +DT     +F G+L  E + E+ +
Sbjct: 70  GRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIK 114



to top

>YDB2_SCHPO (Q10355) Hypothetical RNA-binding protein C22E12.02 in chromosome I|
          Length = 219

 Score = 45.1 bits (105), Expect = 9e-05
 Identities = 21/61 (34%), Positives = 36/61 (59%)
 Frame = +2

Query: 92  VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKRQKN 271
           +FVG L     + +L + FS    +V  ++++D+ G ++GFGFV F + +    A R+KN
Sbjct: 32  LFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDREGKTRGFGFVSFKDSDQFLKAWREKN 91

Query: 272 G 274
           G
Sbjct: 92  G 92



to top

>RBM28_HUMAN (Q9NW13) RNA-binding protein 28 (RNA-binding motif protein 28)|
          Length = 758

 Score = 45.1 bits (105), Expect = 9e-05
 Identities = 24/82 (29%), Positives = 46/82 (56%)
 Frame = +2

Query: 80  KGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAK 259
           K A + +  L    +E  L+ +F+  G ++++ I +  +G  +GFGFV+F     A  A 
Sbjct: 111 KKARLIIRNLSFKCSEDDLKTVFAQFGAVLEVNIPRKPDGKMRGFGFVQFKNLLEAGKAL 170

Query: 260 RQKNGVELQGKRLAVDLSLDQD 325
           +  N  E++G+ +AVD ++ +D
Sbjct: 171 KGMNMKEIKGRTVAVDWAVAKD 192



 Score = 37.7 bits (86), Expect = 0.015
 Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 7/89 (7%)
 Frame = +2

Query: 80  KGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRI-MKDQNGVSKGFGFVRFAERECAY-- 250
           +G  VF+  L   + E  L E+    GE+  +RI +      SKG  F +F  +E A   
Sbjct: 332 EGKTVFIRNLSFDSEEEELGELLQQFGELKYVRIVLHPDTEHSKGCAFAQFMTQEAAQKC 391

Query: 251 ----IAKRQKNGVELQGKRLAVDLSLDQD 325
                 + +  G++L G++L VDL++ +D
Sbjct: 392 LLAASPENEAGGLKLDGRQLKVDLAVTRD 420



 Score = 35.4 bits (80), Expect = 0.074
 Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = +2

Query: 83  GAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNG-VSKGFGFVRFAERE 241
           G  +FVG LP SA    L E+FS  G +    ++ ++     +GFG+V F+  E
Sbjct: 2   GLTLFVGRLPPSARSEQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLE 55



to top

>SXL_DROME (P19339) Protein sex-lethal|
          Length = 354

 Score = 45.1 bits (105), Expect = 9e-05
 Identities = 32/115 (27%), Positives = 52/115 (45%), Gaps = 7/115 (6%)
 Frame = +2

Query: 68  DRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKD-QNGVSKGFGFVRFAEREC 244
           D R     + V  LP+  T+  L  +F   G I   RIM+D + G S G+ FV F     
Sbjct: 119 DPRASNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSFGYAFVDFTSEMD 178

Query: 245 AYIAKRQKNGVELQGKRLAVDL------SLDQDTLFFGNLCKEWSAEEFEELIHK 391
           +  A +  NG+ ++ KRL V        S+    L+  NL +  + ++ + +  K
Sbjct: 179 SQRAIKVLNGITVRNKRLKVSYARPGGESIKDTNLYVTNLPRTITDDQLDTIFGK 233



to top

>TIAR_MOUSE (P70318) Nucleolysin TIAR (TIA-1-related protein)|
          Length = 392

 Score = 45.1 bits (105), Expect = 9e-05
 Identities = 23/70 (32%), Positives = 38/70 (54%)
 Frame = +2

Query: 80  KGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAK 259
           K   V+ GG+    T+  +R+ FS  G+I+++R+  +     KG+ FVRF+  E A  A 
Sbjct: 220 KNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE-----KGYSFVRFSTHESAAHAI 274

Query: 260 RQKNGVELQG 289
              NG  ++G
Sbjct: 275 VSVNGTTIEG 284



 Score = 41.6 bits (96), Expect = 0.001
 Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
 Frame = +2

Query: 92  VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQ-NGVSKGFGFVRFAERECAYIAKRQK 268
           VFVG L    T   ++  F+  G+I D R++KD   G SKG+GFV F  +  A  A    
Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175

Query: 269 NGVELQGKRL 298
            G  L G+++
Sbjct: 176 GGQWLGGRQI 185



 Score = 31.6 bits (70), Expect = 1.1
 Identities = 32/121 (26%), Positives = 51/121 (42%), Gaps = 26/121 (21%)
 Frame = +2

Query: 92  VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQN-----GVSKGFG-----------FV 223
           ++VG L R  TE  + ++FS  G     +++ +Q        S GF            FV
Sbjct: 11  LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCFV 70

Query: 224 RFAERECAYIAKRQKNGVELQGKRLAVD-----LSLDQDT-----LFFGNLCKEWSAEEF 373
            F E   A  A    NG ++ GK + V+      S  +DT     +F G+L  E + E+ 
Sbjct: 71  EFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDI 130

Query: 374 E 376
           +
Sbjct: 131 K 131



to top

>SART3_PONPY (Q5REG1) Squamous cell carcinoma antigen recognized by T-cells 3|
            (SART-3)
          Length = 981

 Score = 45.1 bits (105), Expect = 9e-05
 Identities = 36/126 (28%), Positives = 56/126 (44%), Gaps = 21/126 (16%)
 Frame = +2

Query: 92   VFVGGLPRSATE--GTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKRQ 265
            VFV  LP S  E    LR +F  CGE+V +R +    G  +G+ +V F E + A +   +
Sbjct: 724  VFVSNLPYSMQEPDAKLRPLFEACGEVVQIRPIFSNRGDFRGYRYVEFKEEKSA-LQALE 782

Query: 266  KNGVELQGKRLAV-----------------DLSLDQDTLFFGNLCKEWSAEEFEEL--IH 388
             +   ++G+ + V                   SL++  LF   L    + EE EE+   H
Sbjct: 783  MDRKSVEGRPMFVSPCVDKSKNPDFKVFRYSTSLEKHKLFISGLPFSCTKEELEEICKAH 842

Query: 389  KTFKDV 406
             T KD+
Sbjct: 843  GTVKDL 848



 Score = 42.0 bits (97), Expect = 8e-04
 Identities = 22/75 (29%), Positives = 40/75 (53%)
 Frame = +2

Query: 89   EVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKRQK 268
            ++F+ GLP S T+  L EI    G + DLR++ ++ G  KG  +V +     A  A  + 
Sbjct: 820  KLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKM 879

Query: 269  NGVELQGKRLAVDLS 313
            +G+ ++   + V +S
Sbjct: 880  DGMTIKENVIKVAIS 894



to top

>RBM19_MOUSE (Q8R3C6) Probable RNA-binding protein 19 (RNA-binding motif protein|
            19)
          Length = 952

 Score = 45.1 bits (105), Expect = 9e-05
 Identities = 35/130 (26%), Positives = 63/130 (48%), Gaps = 3/130 (2%)
 Frame = +2

Query: 86   AEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVS--KGFGFVRFAERECAYIA- 256
            +++ V  +P  A +  +RE+FST GE+  +R+ K   G    +GFGFV F  ++ A  A 
Sbjct: 824  SKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAF 883

Query: 257  KRQKNGVELQGKRLAVDLSLDQDTLFFGNLCKEWSAEEFEELIHKTFKDVISVDLAMAPN 436
                +   L G+RL ++ +  + T+      +  +A  F+E   K    V+   L    +
Sbjct: 884  NALCHSTHLYGRRLVLEWADSEVTV---QTLRRKTARHFQEPPKKKRSAVLDGILEQLED 940

Query: 437  LDSSTSKRRL 466
             D+S  ++ L
Sbjct: 941  EDNSDGEQAL 950



 Score = 37.7 bits (86), Expect = 0.015
 Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
 Frame = +2

Query: 50  GDYDEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQ-NGVSKGFGFVR 226
           G+ +E++       +FV  L  +++E  L ++FS  G + +L    D      KGF FV 
Sbjct: 388 GENEEEEDLADSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVT 447

Query: 227 FAERECAYIAKRQKNGVELQGKRLAV 304
           F   E A  A  + +G   QG+ L V
Sbjct: 448 FMFPEHAVKAYAEVDGQVFQGRMLHV 473



to top

>DAZL_BRARE (Q9YGW7) Deleted in azoospermia-like (DAZ-like protein) (zDazl)|
          Length = 229

 Score = 44.7 bits (104), Expect = 1e-04
 Identities = 18/48 (37%), Positives = 31/48 (64%)
 Frame = +2

Query: 92  VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAE 235
           +FVGG+     E  +RE F+  G + +++I+  + G+ KG+GFV F+E
Sbjct: 49  LFVGGIDMKVDENEIREFFAKYGSVKEVKIITYRGGICKGYGFVYFSE 96



to top

>ROA3_HUMAN (P51991) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)|
          Length = 378

 Score = 44.7 bits (104), Expect = 1e-04
 Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
 Frame = +2

Query: 17  EPKMDRRAASHGDYDEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKD-Q 193
           EPK   RA S  D  +    +   ++FVGG+     E  LR+ F   G+I  + +M+D Q
Sbjct: 106 EPK---RAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQ 162

Query: 194 NGVSKGFGFVRFAERE 241
           +G  +GF FV F + +
Sbjct: 163 SGKKRGFAFVTFDDHD 178



 Score = 43.5 bits (101), Expect = 3e-04
 Identities = 31/103 (30%), Positives = 55/103 (53%), Gaps = 5/103 (4%)
 Frame = +2

Query: 2   RHEGEEPKMDRRAASHGDYDEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRI 181
           R + +  +  RR    G   ++  +++  ++F+GGL    T+ +LRE F   G + D  +
Sbjct: 9   RPQPDSGRRRRRRGEEGHDPKEPEQLR--KLFIGGLSFETTDDSLREHFEKWGTLTDCVV 66

Query: 182 MKD-QNGVSKGFGFVRFA---ERECAYIAKRQK-NGVELQGKR 295
           M+D Q   S+GFGFV ++   E + A  A+  K +G  ++ KR
Sbjct: 67  MRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKR 109



to top

>ROA3_RAT (Q6URK4) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)|
          Length = 379

 Score = 44.7 bits (104), Expect = 1e-04
 Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
 Frame = +2

Query: 17  EPKMDRRAASHGDYDEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKD-Q 193
           EPK   RA S  D  +    +   ++FVGG+     E  LR+ F   G+I  + +M+D Q
Sbjct: 106 EPK---RAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQ 162

Query: 194 NGVSKGFGFVRFAERE 241
           +G  +GF FV F + +
Sbjct: 163 SGKKRGFAFVTFDDHD 178



 Score = 43.5 bits (101), Expect = 3e-04
 Identities = 31/103 (30%), Positives = 55/103 (53%), Gaps = 5/103 (4%)
 Frame = +2

Query: 2   RHEGEEPKMDRRAASHGDYDEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRI 181
           R + +  +  RR    G   ++  +++  ++F+GGL    T+ +LRE F   G + D  +
Sbjct: 9   RPQPDSGRRRRRRGEEGHDPKEPEQLR--KLFIGGLSFETTDDSLREHFEKWGTLTDCVV 66

Query: 182 MKD-QNGVSKGFGFVRFA---ERECAYIAKRQK-NGVELQGKR 295
           M+D Q   S+GFGFV ++   E + A  A+  K +G  ++ KR
Sbjct: 67  MRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKR 109



to top

>ROA3_MOUSE (Q8BG05) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)|
          Length = 379

 Score = 44.7 bits (104), Expect = 1e-04
 Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
 Frame = +2

Query: 17  EPKMDRRAASHGDYDEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKD-Q 193
           EPK   RA S  D  +    +   ++FVGG+     E  LR+ F   G+I  + +M+D Q
Sbjct: 106 EPK---RAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQ 162

Query: 194 NGVSKGFGFVRFAERE 241
           +G  +GF FV F + +
Sbjct: 163 SGKKRGFAFVTFDDHD 178



 Score = 43.5 bits (101), Expect = 3e-04
 Identities = 31/103 (30%), Positives = 55/103 (53%), Gaps = 5/103 (4%)
 Frame = +2

Query: 2   RHEGEEPKMDRRAASHGDYDEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRI 181
           R + +  +  RR    G   ++  +++  ++F+GGL    T+ +LRE F   G + D  +
Sbjct: 9   RPQPDSGRRRRRRGEEGHDPKEPEQLR--KLFIGGLSFETTDDSLREHFEKWGTLTDCVV 66

Query: 182 MKD-QNGVSKGFGFVRFA---ERECAYIAKRQK-NGVELQGKR 295
           M+D Q   S+GFGFV ++   E + A  A+  K +G  ++ KR
Sbjct: 67  MRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKR 109



to top

>DND1_MOUSE (Q6VY05) Dead end protein homolog 1 (RNA-binding motif,|
           single-stranded interacting protein 4)
          Length = 352

 Score = 44.3 bits (103), Expect = 2e-04
 Identities = 19/58 (32%), Positives = 34/58 (58%)
 Frame = +2

Query: 83  GAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIA 256
           G+EV++G LP+   E  L  +F   G + + R+M   +G+++GF + R++ R  A  A
Sbjct: 57  GSEVYIGRLPQDVYEHQLIPLFQRVGRLYEFRLMMTFSGLNRGFAYARYSSRRGAQAA 114



to top

>RBM14_PONPY (Q5RC41) RNA-binding protein 14 (RNA-binding motif protein 14)|
          Length = 669

 Score = 44.3 bits (103), Expect = 2e-04
 Identities = 24/75 (32%), Positives = 40/75 (53%)
 Frame = +2

Query: 89  EVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKRQK 268
           ++FVG +  + T   LR +F   G +++  ++KD       + FV   +   A  A  Q 
Sbjct: 80  KIFVGNVSAACTSQELRSLFERRGRVIECDVVKD-------YAFVHMEKEADAKAAIAQL 132

Query: 269 NGVELQGKRLAVDLS 313
           NG E++GKR+ V+LS
Sbjct: 133 NGKEVKGKRINVELS 147



to top

>RBM14_MOUSE (Q8C2Q3) RNA-binding protein 14 (RNA-binding motif protein 14)|
          Length = 669

 Score = 44.3 bits (103), Expect = 2e-04
 Identities = 24/75 (32%), Positives = 40/75 (53%)
 Frame = +2

Query: 89  EVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKRQK 268
           ++FVG +  + T   LR +F   G +++  ++KD       + FV   +   A  A  Q 
Sbjct: 80  KIFVGNVSAACTSQELRSLFERRGRVIECDVVKD-------YAFVHMEKEADAKAAIAQL 132

Query: 269 NGVELQGKRLAVDLS 313
           NG E++GKR+ V+LS
Sbjct: 133 NGKEVKGKRINVELS 147



to top

>RBM14_HUMAN (Q96PK6) RNA-binding protein 14 (RNA-binding motif protein 14)|
           (RRM-containing coactivator activator/modulator)
           (Synaptotagmin-interacting protein) (SYT-interacting
           protein)
          Length = 669

 Score = 44.3 bits (103), Expect = 2e-04
 Identities = 24/75 (32%), Positives = 40/75 (53%)
 Frame = +2

Query: 89  EVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKRQK 268
           ++FVG +  + T   LR +F   G +++  ++KD       + FV   +   A  A  Q 
Sbjct: 80  KIFVGNVSAACTSQELRSLFERRGRVIECDVVKD-------YAFVHMEKEADAKAAIAQL 132

Query: 269 NGVELQGKRLAVDLS 313
           NG E++GKR+ V+LS
Sbjct: 133 NGKEVKGKRINVELS 147



to top

>RBM14_BOVIN (Q5EA36) RNA-binding protein 14 (RNA-binding motif protein 14)|
          Length = 669

 Score = 44.3 bits (103), Expect = 2e-04
 Identities = 24/75 (32%), Positives = 40/75 (53%)
 Frame = +2

Query: 89  EVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKRQK 268
           ++FVG +  + T   LR +F   G +++  ++KD       + FV   +   A  A  Q 
Sbjct: 80  KIFVGNVSAACTSQELRSLFERRGRVIECDVVKD-------YAFVHMEKEADAKAAIAQL 132

Query: 269 NGVELQGKRLAVDLS 313
           NG E++GKR+ V+LS
Sbjct: 133 NGKEVKGKRINVELS 147



to top

>RSP4_CAEEL (Q09511) Probable splicing factor, arginine/serine-rich 4|
           (RNA-binding protein srp-2) (CeSC35)
          Length = 196

 Score = 44.3 bits (103), Expect = 2e-04
 Identities = 28/73 (38%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
 Frame = +2

Query: 98  VGGLPRSATEGTLREIFSTCGEIVDLRIMKDQ-NGVSKGFGFVRFAERECAYIAKRQKNG 274
           +  L    T   LR  F   G+I D+ I +D+ +  SKGFGFVRF ER  A  A  + +G
Sbjct: 23  IDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRDAEHALDRTDG 82

Query: 275 VELQGKRLAVDLS 313
             + G+ L V L+
Sbjct: 83  KLVDGRELRVTLA 95



to top

>MRD1_ASHGO (Q75A83) Multiple RNA-binding domain-containing protein 1|
          Length = 838

 Score = 44.3 bits (103), Expect = 2e-04
 Identities = 27/94 (28%), Positives = 47/94 (50%)
 Frame = +2

Query: 23  KMDRRAASHGDYDEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGV 202
           K+  + +S     +  ++    ++ V  LP  AT   + E+FS+ G++  +R+ K  +  
Sbjct: 691 KISHKQSSLPKTSKGSKKKISGKIIVKNLPFEATRKDVFELFSSFGQLKSVRVPKKFDKS 750

Query: 203 SKGFGFVRFAERECAYIAKRQKNGVELQGKRLAV 304
           ++GF FV F     A  A  Q  GV L G+RL +
Sbjct: 751 ARGFAFVEFLLPSEAENAMDQLQGVHLLGRRLVM 784



 Score = 35.8 bits (81), Expect = 0.057
 Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
 Frame = +2

Query: 92  VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKD-QNGVSKGFGFVRFAERECAYIAKRQK 268
           +F+  +   ATE   +++FS  GE+ ++ +  D + G SKGF +V F + E A  A  + 
Sbjct: 303 LFLRNILYDATEEDFKQLFSPYGELEEVHVAVDTRTGQSKGFAYVLFKDPEHAANAYIEL 362

Query: 269 NGVELQGKRLAV 304
           +    QG+ L +
Sbjct: 363 DKQIFQGRLLHI 374



 Score = 35.4 bits (80), Expect = 0.074
 Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 9/85 (10%)
 Frame = +2

Query: 86  AEVFVGGLPRSATEGTLREIF---------STCGEIVDLRIMKDQNGVSKGFGFVRFAER 238
           + V V GLP    E  LR  F          +  +I D++I+KD++G S+ F F+ +   
Sbjct: 2   SRVIVKGLPIYLEEARLRAHFLKRLQQQGRGSEDQITDVKIVKDKSGNSRRFAFIGYRSE 61

Query: 239 ECAYIAKRQKNGVELQGKRLAVDLS 313
           + A+ A    NG  +   R+ V ++
Sbjct: 62  QDAFDAIEYFNGSFIDTARIEVAMA 86



to top

>ROA1_SCHAM (P21522) Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog|
          Length = 342

 Score = 44.3 bits (103), Expect = 2e-04
 Identities = 35/137 (25%), Positives = 65/137 (47%), Gaps = 12/137 (8%)
 Frame = +2

Query: 89  EVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKD-QNGVSKGFGFVRFAERECAYIAKRQ 265
           ++F+GGL    T+ +L++ F   GEIVD+ +MKD +   S+GFGF+ ++       A+  
Sbjct: 18  KLFIGGLDYRTTDESLKQHFEQWGEIVDVVVMKDPKTKRSRGFGFITYSRAHMVDDAQNA 77

Query: 266 K----NGVELQGKRLAVDLSLDQ-------DTLFFGNLCKEWSAEEFEELIHKTFKDVIS 412
           +    +G  ++ KR      + +         LF G + +E    +  +   K +  V+S
Sbjct: 78  RPHKVDGRVVEPKRAVPRTEIGRPEAGATVKKLFVGGIKEEMEENDLRDYF-KQYGTVVS 136

Query: 413 VDLAMAPNLDSSTSKRR 463
             +     +D  T K+R
Sbjct: 137 AAIV----VDKETRKKR 149



to top

>TRA2_DROVI (O02008) Transformer-2 sex-determining protein|
          Length = 272

 Score = 44.3 bits (103), Expect = 2e-04
 Identities = 33/108 (30%), Positives = 52/108 (48%), Gaps = 1/108 (0%)
 Frame = +2

Query: 2   RHEGEEPKMDRRAASHGDYDEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRI 181
           RH       DR+         Q  R  G    V GL  + T+  +RE+F+  G I  +++
Sbjct: 81  RHYSGRTSRDRQRMRQARDHPQASRCIG----VFGLNTNTTQQKVRELFNKFGPIERIQM 136

Query: 182 MKDQNGV-SKGFGFVRFAERECAYIAKRQKNGVELQGKRLAVDLSLDQ 322
           + D +   S+GF F+ F     A +AK    G+E+ G+R+ VD S+ Q
Sbjct: 137 VIDAHTHRSRGFCFIYFENLGDARVAKDACTGMEVDGRRIRVDYSITQ 184



to top

>NOP4_YEAST (P37838) Nucleolar protein NOP4 (Nucleolar protein NOP77)|
          Length = 685

 Score = 44.3 bits (103), Expect = 2e-04
 Identities = 25/78 (32%), Positives = 39/78 (50%)
 Frame = +2

Query: 92  VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKRQKN 271
           +FV  +P+  T+  L + FS    I    ++KD N  S+GFGFV FA  +    A  +  
Sbjct: 28  LFVRSIPQDVTDEQLADFFSNFAPIKHAVVVKDTNKRSRGFGFVSFAVEDDTKEALAKAR 87

Query: 272 GVELQGKRLAVDLSLDQD 325
             +  G  L VD++  +D
Sbjct: 88  KTKFNGHILRVDIAKRRD 105



 Score = 40.8 bits (94), Expect = 0.002
 Identities = 26/108 (24%), Positives = 52/108 (48%), Gaps = 2/108 (1%)
 Frame = +2

Query: 8   EGEEPKMDRRAASHGDYDEQDRRVKGA-EVFVGGLPRSATEGT-LREIFSTCGEIVDLRI 181
           E  E    +      D D +D  +KG  ++ +  +P S  +   L++IF   G +V+  I
Sbjct: 120 ESSEKITGQNNEDEDDADGEDSMLKGKPKLIIRNMPWSCRDPVKLKKIFGRYGTVVEATI 179

Query: 182 MKDQNGVSKGFGFVRFAERECAYIAKRQKNGVELQGKRLAVDLSLDQD 325
            + ++G   GF FV   +     IA      +++ G+++AVD ++ ++
Sbjct: 180 PRKRDGKLCGFAFVTMKKISNCRIALENTKDLKIDGRKVAVDFAVQKN 227



 Score = 34.3 bits (77), Expect = 0.16
 Identities = 21/79 (26%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
 Frame = +2

Query: 5   HEGEEPKMDRRAASHGDYDEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEI-VDLRI 181
           +E E+ ++D+ + +     +   + +   VFV  +P  ATE +L   FS  G +   L +
Sbjct: 263 NEEEDRQVDQASKNKESKRKAQNKREDFSVFVRNVPYDATEESLAPHFSKFGSVKYALPV 322

Query: 182 MKDQNGVSKGFGFVRFAER 238
           +    G++KG  FV F ++
Sbjct: 323 IDKSTGLAKGTAFVAFKDQ 341



to top

>ROA1_XENLA (P17130) Heterogeneous nuclear ribonucleoproteins A1 homolog (hnRNP|
           A1) (Helix-destabilizing protein) (Single-strand binding
           protein) (hnRNP core protein A1)
          Length = 365

 Score = 44.3 bits (103), Expect = 2e-04
 Identities = 27/76 (35%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
 Frame = +2

Query: 17  EPKMDRRAASHGDYDEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQ- 193
           EPK   RA S  D       +   ++FVGG+     E  LRE F   G+I  + IM D+ 
Sbjct: 85  EPK---RAVSREDSSRPGAHLTVKKIFVGGIKEDTEEDHLREYFEQYGKIEVIEIMTDRG 141

Query: 194 NGVSKGFGFVRFAERE 241
           +G  +GF FV F + +
Sbjct: 142 SGKKRGFAFVTFEDHD 157



 Score = 41.6 bits (96), Expect = 0.001
 Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 5/74 (6%)
 Frame = +2

Query: 89  EVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGV-SKGFGFVRFA---ERECAYIA 256
           ++F+GGL    T+ +LRE F   G + D  +M+D N   S+GFGFV +    E + A  A
Sbjct: 15  KLFIGGLSFETTDESLREHFEQWGTLTDCVVMRDPNSKRSRGFGFVTYLSTDEVDAAMTA 74

Query: 257 KRQK-NGVELQGKR 295
           +  K +G  ++ KR
Sbjct: 75  RPHKVDGRVVEPKR 88



to top

>SART3_HUMAN (Q15020) Squamous cell carcinoma antigen recognized by T-cells 3|
            (SART-3) (hSART-3) (Tat-interacting protein of 110 kDa)
            (Tip110)
          Length = 963

 Score = 43.9 bits (102), Expect = 2e-04
 Identities = 36/126 (28%), Positives = 56/126 (44%), Gaps = 21/126 (16%)
 Frame = +2

Query: 92   VFVGGLPRSATEGT--LREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKRQ 265
            VFV  LP S  E    LR +F  CGE+V +R +    G  +G+ +V F E + A +   +
Sbjct: 706  VFVSNLPYSMQEPDTKLRPLFEACGEVVQIRPIFSNRGDFRGYCYVEFKEEKSA-LQALE 764

Query: 266  KNGVELQGKRLAV-----------------DLSLDQDTLFFGNLCKEWSAEEFEEL--IH 388
             +   ++G+ + V                   SL++  LF   L    + EE EE+   H
Sbjct: 765  MDRKSVEGRPMFVSPCVDKSKNPDFKVFRYSTSLEKHKLFISGLPFSCTKEELEEICKAH 824

Query: 389  KTFKDV 406
             T KD+
Sbjct: 825  GTVKDL 830



 Score = 42.0 bits (97), Expect = 8e-04
 Identities = 22/75 (29%), Positives = 40/75 (53%)
 Frame = +2

Query: 89   EVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKRQK 268
            ++F+ GLP S T+  L EI    G + DLR++ ++ G  KG  +V +     A  A  + 
Sbjct: 802  KLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKM 861

Query: 269  NGVELQGKRLAVDLS 313
            +G+ ++   + V +S
Sbjct: 862  DGMTIKENIIKVAIS 876



to top

>YDC1_SCHPO (Q10422) Hypothetical RNA-binding protein C25G10.01 in chromosome I|
          Length = 297

 Score = 43.9 bits (102), Expect = 2e-04
 Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
 Frame = +2

Query: 83  GAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQ-NGVSKGFGFVRFAERECAYIAK 259
           G ++FV G+     E  L++IFS  G +  +RIM++     S+GFGF+ F+  E A  A 
Sbjct: 100 GNDLFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATSAI 159

Query: 260 RQKNGVELQGKRLAV 304
              N  E  G+ L V
Sbjct: 160 DNLNSQEFYGRVLNV 174



to top

>A2BP1_HUMAN (Q9NWB1) Ataxin-2-binding protein 1|
          Length = 397

 Score = 43.9 bits (102), Expect = 2e-04
 Identities = 23/83 (27%), Positives = 47/83 (56%)
 Frame = +2

Query: 59  DEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAER 238
           +  + + +   + V  +P    +  LR++F   G+I+D+ I+ ++ G SKGFGFV F   
Sbjct: 108 ENTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG-SKGFGFVTFENS 166

Query: 239 ECAYIAKRQKNGVELQGKRLAVD 307
             A  A+ + +G  ++G+++ V+
Sbjct: 167 ADADRAREKLHGTVVEGRKIEVN 189



to top

>RBM9_HUMAN (O43251) RNA-binding protein 9 (RNA-binding motif protein 9)|
           (Hexaribonucleotide-binding protein 2) (Repressor of
           tamoxifen transcriptional activity)
          Length = 390

 Score = 43.5 bits (101), Expect = 3e-04
 Identities = 23/70 (32%), Positives = 42/70 (60%)
 Frame = +2

Query: 98  VGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKRQKNGV 277
           V  +P    +  LR++F   G+I+D+ I+ ++ G SKGFGFV F     A  A+ + +G 
Sbjct: 125 VSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG-SKGFGFVTFENSADADRAREKLHGT 183

Query: 278 ELQGKRLAVD 307
            ++G+++ V+
Sbjct: 184 VVEGRKIEVN 193



to top

>SRR55_DROME (P26686) Serine-arginine protein 55 (SRP55) (Protein enhancer of|
           deformed) (52-kDa bracketing protein) (B52 protein)
          Length = 375

 Score = 43.5 bits (101), Expect = 3e-04
 Identities = 27/75 (36%), Positives = 36/75 (48%)
 Frame = +2

Query: 83  GAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKR 262
           G+ V+VGGLP    E  L   F   G   D+ I         G+GFV F +   A  A  
Sbjct: 2   GSRVYVGGLPYGVRERDLERFFKGYGRTRDILI-------KNGYGFVEFEDYRDADDAVY 54

Query: 263 QKNGVELQGKRLAVD 307
           + NG EL G+R+ V+
Sbjct: 55  ELNGKELLGERVVVE 69



to top

>A2BP1_MOUSE (Q9JJ43) Ataxin-2-binding protein 1|
          Length = 396

 Score = 43.5 bits (101), Expect = 3e-04
 Identities = 23/70 (32%), Positives = 42/70 (60%)
 Frame = +2

Query: 98  VGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKRQKNGV 277
           V  +P    +  LR++F   G+I+D+ I+ ++ G SKGFGFV F     A  A+ + +G 
Sbjct: 120 VSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG-SKGFGFVTFENSADADRAREKLHGT 178

Query: 278 ELQGKRLAVD 307
            ++G+++ V+
Sbjct: 179 VVEGRKIEVN 188



to top

>RO32_XENLA (P51992) Heterogeneous nuclear ribonucleoprotein A3 homolog 2|
           (hnRNP A3(B))
          Length = 385

 Score = 43.5 bits (101), Expect = 3e-04
 Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
 Frame = +2

Query: 17  EPKMDRRAASHGDYDEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKD-Q 193
           EPK   RA S  D       +   ++FVGG+     E  LR+ F   G+I  + +M+D Q
Sbjct: 98  EPK---RAVSREDSARPGAHLTVKKIFVGGIKEDTEEYHLRDYFEGYGKIETIEVMEDRQ 154

Query: 194 NGVSKGFGFVRFAERE 241
           +G  +GF FV F + +
Sbjct: 155 SGKKRGFAFVTFDDHD 170



 Score = 42.0 bits (97), Expect = 8e-04
 Identities = 24/63 (38%), Positives = 36/63 (57%), Gaps = 5/63 (7%)
 Frame = +2

Query: 59  DEQDRRVKGAE----VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKD-QNGVSKGFGFV 223
           D+Q    K  E    +F+GGL    T+ +LRE F   G++ D  +M+D Q   S+GFGFV
Sbjct: 14  DDQGHEPKEPEQLRKLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFV 73

Query: 224 RFA 232
            ++
Sbjct: 74  TYS 76



to top

>RBM4_RABIT (Q9BDY9) RNA-binding protein 4 (RNA-binding motif protein 4) (Lark|
           homolog)
          Length = 359

 Score = 43.5 bits (101), Expect = 3e-04
 Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 8/105 (7%)
 Frame = +2

Query: 89  EVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKRQK 268
           ++F+G LPR ATE  +R +F   G++++  I+K+       +GFV   ++  A  A R  
Sbjct: 3   KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKN-------YGFVHIEDKTAAEDAIRNL 55

Query: 269 NGVELQGKRLAVDLSLDQD----TLFFGNLCKEWSAEE----FEE 379
           +  +L G  + V+ S ++      L  GN+    + +E    FEE
Sbjct: 56  HHYKLHGVNINVEASKNKSKASTKLHVGNISPTCTNQELRAKFEE 100



to top

>RBM4B_HUMAN (Q9BQ04) RNA-binding protein 4B (RNA-binding motif protein 4B)|
           (RNA-binding protein 30) (RNA-binding motif protein 30)
          Length = 359

 Score = 43.5 bits (101), Expect = 3e-04
 Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 8/105 (7%)
 Frame = +2

Query: 89  EVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKRQK 268
           ++F+G LPR ATE  +R +F   G++++  I+K+       +GFV   ++  A  A R  
Sbjct: 3   KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKN-------YGFVHIEDKTAAEDAIRNL 55

Query: 269 NGVELQGKRLAVDLSLDQD----TLFFGNLCKEWSAEE----FEE 379
           +  +L G  + V+ S ++      L  GN+    + +E    FEE
Sbjct: 56  HHYKLHGVNINVEASKNKSKASTKLHVGNISPTCTNQELRAKFEE 100



to top

>RBM4_MOUSE (Q8C7Q4) RNA-binding protein 4 (RNA-binding motif protein 4)|
           (RNA-binding motif protein 4a) (Lark homolog) (mLark)
          Length = 361

 Score = 43.5 bits (101), Expect = 3e-04
 Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 8/105 (7%)
 Frame = +2

Query: 89  EVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKRQK 268
           ++F+G LPR ATE  +R +F   G++++  I+K+       +GFV   ++  A  A R  
Sbjct: 3   KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKN-------YGFVHIEDKTAAEDAIRNL 55

Query: 269 NGVELQGKRLAVDLSLDQD----TLFFGNLCKEWSAEE----FEE 379
           +  +L G  + V+ S ++      L  GN+    + +E    FEE
Sbjct: 56  HHYKLHGVNINVEASKNKSKASTKLHVGNISPTCTNQELRAKFEE 100



to top

>RBM28_MOUSE (Q8CGC6) RNA-binding protein 28 (RNA-binding motif protein 28)|
          Length = 749

 Score = 43.5 bits (101), Expect = 3e-04
 Identities = 24/82 (29%), Positives = 45/82 (54%)
 Frame = +2

Query: 80  KGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAK 259
           K A + +  L    +E  L+ +F+  G ++++ I K  +G  +GF FV+F     A  A 
Sbjct: 111 KKARLIIRNLSFKCSEDDLKAVFTHYGTVLEVNIPKKPDGKMRGFAFVQFKNLLEAGKAL 170

Query: 260 RQKNGVELQGKRLAVDLSLDQD 325
           +  N  E++G+ +AVD ++ +D
Sbjct: 171 KGANMKEIKGRTVAVDWAVAKD 192



 Score = 35.8 bits (81), Expect = 0.057
 Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = +2

Query: 83  GAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNG-VSKGFGFVRFAERE 241
           G  +FVG LP SA    L E+FS  G +    ++ ++     +GFG+V F+  E
Sbjct: 2   GLTLFVGRLPPSARSDQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLE 55



to top

>RBM4B_RAT (Q64LC9) RNA-binding protein 4B (RNA-binding motif protein 4B)|
           (RNA-binding protein 30) (RNA-binding motif protein 30)
           (Zinc-responsive protein ZD7)
          Length = 357

 Score = 43.5 bits (101), Expect = 3e-04
 Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 8/105 (7%)
 Frame = +2

Query: 89  EVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKRQK 268
           ++F+G LPR ATE  +R +F   G++++  I+K+       +GFV   ++  A  A R  
Sbjct: 3   KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKN-------YGFVHIEDKTAAEDAIRNL 55

Query: 269 NGVELQGKRLAVDLSLDQD----TLFFGNLCKEWSAEE----FEE 379
           +  +L G  + V+ S ++      L  GN+    + +E    FEE
Sbjct: 56  HHYKLHGVNINVEASKNKSKASTKLHVGNISPTCTNQELRAKFEE 100



to top

>RBM4B_MOUSE (Q8VE92) RNA-binding protein 4B (RNA-binding motif protein 4B)|
           (RNA-binding protein 30) (RNA-binding motif protein 30)
          Length = 357

 Score = 43.5 bits (101), Expect = 3e-04
 Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 8/105 (7%)
 Frame = +2

Query: 89  EVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKRQK 268
           ++F+G LPR ATE  +R +F   G++++  I+K+       +GFV   ++  A  A R  
Sbjct: 3   KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKN-------YGFVHIEDKTAAEDAIRNL 55

Query: 269 NGVELQGKRLAVDLSLDQD----TLFFGNLCKEWSAEE----FEE 379
           +  +L G  + V+ S ++      L  GN+    + +E    FEE
Sbjct: 56  HHYKLHGVNINVEASKNKSKASTKLHVGNISPTCTNQELRAKFEE 100



to top

>MRD1_YARLI (Q6CEW9) Multiple RNA-binding domain-containing protein 1|
          Length = 828

 Score = 43.1 bits (100), Expect = 4e-04
 Identities = 23/96 (23%), Positives = 48/96 (50%), Gaps = 2/96 (2%)
 Frame = +2

Query: 23  KMDRRAASHGDYDE--QDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQN 196
           K+  + ++ G  +E  + ++   +++ +  LP  AT+  ++++F   G +  +R+ K  N
Sbjct: 680 KLQLKISNRGQDEETTETKKAIDSKILIKNLPFEATKKDVQKLFGAFGSLKTVRVPKKFN 739

Query: 197 GVSKGFGFVRFAERECAYIAKRQKNGVELQGKRLAV 304
             S+GF F  +   + A  A     G  L G+RL +
Sbjct: 740 SESRGFAFAEYVSAKEAEHAMSALQGTHLLGRRLVL 775



 Score = 38.5 bits (88), Expect = 0.009
 Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
 Frame = +2

Query: 80  KGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRI-MKDQNGVSKGFGFVRFAERECAYIA 256
           K   +F+  L  +A E   R++FS  GE+ ++ + +  + G  KGF  V+F + E A  A
Sbjct: 299 KTGRLFLRNLLYTAKEEDFRQLFSQYGELEEVHLPINTKTGQCKGFAHVQFEDPENAIAA 358

Query: 257 KRQKNGVELQGKRLAV 304
              ++G   QG+ L +
Sbjct: 359 YEAQDGKIFQGRLLHI 374



to top

>ROA1_DROME (P07909) Heterogeneous nuclear ribonucleoprotein A1 (hnRNP core|
           protein A1-A) (PEN repeat clone P9)
          Length = 365

 Score = 43.1 bits (100), Expect = 4e-04
 Identities = 33/101 (32%), Positives = 48/101 (47%), Gaps = 1/101 (0%)
 Frame = +2

Query: 17  EPKMDRRAASHGDYDEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKD-Q 193
           EPK   RA    D D  +      ++FVG L     E ++R+ F   G IVD+ I+ D +
Sbjct: 102 EPK---RAVPRQDIDSPNAGATVKKLFVGALKDDHDEQSIRDYFQHFGNIVDINIVIDKE 158

Query: 194 NGVSKGFGFVRFAERECAYIAKRQKNGVELQGKRLAVDLSL 316
            G  +GF FV F + +       QK   +L GK + V  +L
Sbjct: 159 TGKKRGFAFVEFDDYDPVDKVVLQKQH-QLNGKMVDVKKAL 198



 Score = 42.7 bits (99), Expect = 5e-04
 Identities = 33/137 (24%), Positives = 64/137 (46%), Gaps = 12/137 (8%)
 Frame = +2

Query: 89  EVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKD-QNGVSKGFGFVRFAERECAYIAKRQ 265
           ++F+GGL    T+  L+  F   G IVD+ +MKD +   S+GFGF+ ++       A++ 
Sbjct: 32  KLFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKRSRGFGFITYSHSSMIDEAQKS 91

Query: 266 K----NGVELQGKRLAVDLSLDQDT-------LFFGNLCKEWSAEEFEELIHKTFKDVIS 412
           +    +G  ++ KR      +D          LF G L  +   +   +   + F +++ 
Sbjct: 92  RPHKIDGRVVEPKRAVPRQDIDSPNAGATVKKLFVGALKDDHDEQSIRDYF-QHFGNIVD 150

Query: 413 VDLAMAPNLDSSTSKRR 463
           +++     +D  T K+R
Sbjct: 151 INIV----IDKETGKKR 163



to top

>YNR5_YEAST (P53883) Hypothetical 45.7 kDa protein in RPS3-PSD1 intergenic|
           region
          Length = 403

 Score = 43.1 bits (100), Expect = 4e-04
 Identities = 24/78 (30%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
 Frame = +2

Query: 92  VFVGGLPRSATEGTLREIFSTCGEIVDLRIMK-DQNGVSKGFGFVRFAERECAYIAKRQK 268
           +FVG L    T+  LR+ F  CG+IV +R+   + +G  KGF F+ F   E +    + K
Sbjct: 241 LFVGNLSFDVTDDLLRKHFQHCGDIVKIRMATFEDSGKCKGFAFIDFKNEEGSTNELKDK 300

Query: 269 NGVELQGKRLAVDLSLDQ 322
           +  ++ G+ L ++   D+
Sbjct: 301 SCRKIAGRPLRMEYGEDR 318



to top

>MK67I_BRARE (Q8JIY8) MKI67 FHA domain-interacting nucleolar phosphoprotein-like|
           (Nucleolar phosphoprotein NOPP34-like protein)
          Length = 269

 Score = 43.1 bits (100), Expect = 4e-04
 Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
 Frame = +2

Query: 92  VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKD-QNGVSKGFGFVRFAERECAYIAKRQK 268
           ++VG LPR   E  L+  F   G+++ LR+ +  + G SKG+GFV F   E A I     
Sbjct: 47  LYVGHLPRGLFEPQLKSYFEQFGKVLRLRVSRSKKTGGSKGYGFVEFECDEVAKIVAETM 106

Query: 269 NGVELQGKRL 298
           N   L G+R+
Sbjct: 107 NNY-LMGERI 115



to top

>RBM4_HUMAN (Q9BWF3) RNA-binding protein 4 (RNA-binding motif protein 4)|
           (RNA-binding motif protein 4a) (Lark homolog) (hLark)
          Length = 364

 Score = 43.1 bits (100), Expect = 4e-04
 Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 8/105 (7%)
 Frame = +2

Query: 89  EVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKRQK 268
           ++F+G LPR ATE  +R +F   G++++  I+K+       +GFV   ++  A  A R  
Sbjct: 3   KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKN-------YGFVHIEDKTAAEDAIRNL 55

Query: 269 NGVELQGKRLAVDLSLDQD----TLFFGNLCKEWSAEE----FEE 379
           +  +L G  + V+ S ++      L  GN+    + +E    FEE
Sbjct: 56  HHYKLHGVNINVEASKNKSKTSTKLHVGNISPTCTNKELRAKFEE 100



to top

>RO22_XENLA (P51990) Heterogeneous nuclear ribonucleoprotein A2 homolog 2|
           (hnRNP A2(B))
          Length = 358

 Score = 43.1 bits (100), Expect = 4e-04
 Identities = 27/76 (35%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
 Frame = +2

Query: 17  EPKMDRRAASHGDYDEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKD-Q 193
           EPK   RA +  +  +    V   ++FVGG+     E  LRE F   G+I    I+ D Q
Sbjct: 80  EPK---RAVAREESAKPGAHVTVKKLFVGGIKEDTEEHHLREYFEEYGKIESTEIITDKQ 136

Query: 194 NGVSKGFGFVRFAERE 241
           +G  +GFGFV F + +
Sbjct: 137 SGKKRGFGFVTFNDHD 152



 Score = 40.0 bits (92), Expect = 0.003
 Identities = 19/49 (38%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
 Frame = +2

Query: 89  EVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKD-QNGVSKGFGFVRFA 232
           ++F+GGL    TE +LR  +   G++ D  +M+D  +  S+GFGFV F+
Sbjct: 10  KLFIGGLSFETTEESLRNFYEQWGQLTDCVVMRDPASKRSRGFGFVTFS 58



to top

>RBM4_BOVIN (Q3MHX3) RNA-binding protein 4 (RNA-binding motif protein 4)|
           (RNA-binding motif protein 4a)
          Length = 362

 Score = 43.1 bits (100), Expect = 4e-04
 Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 8/105 (7%)
 Frame = +2

Query: 89  EVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKRQK 268
           ++F+G LPR ATE  +R +F   G++++  I+K+       +GFV   ++  A  A R  
Sbjct: 3   KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKN-------YGFVHIEDKTAAEDAIRNL 55

Query: 269 NGVELQGKRLAVDLSLDQD----TLFFGNLCKEWSAEE----FEE 379
           +  +L G  + V+ S ++      L  GN+    + +E    FEE
Sbjct: 56  HHYKLHGVNINVEASKNKSKTSTKLHVGNISPTCTNKELRAKFEE 100



to top

>ROA2_MOUSE (O88569) Heterogeneous nuclear ribonucleoproteins A2/B1 (hnRNP A2 /|
           hnRNP B1)
          Length = 341

 Score = 42.7 bits (99), Expect = 5e-04
 Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
 Frame = +2

Query: 17  EPKMDRRAASHGDYDEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKD-Q 193
           EPK   RA +  +  +    V   ++FVGG+     E  LR+ F   G+I  + I+ D Q
Sbjct: 80  EPK---RAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQ 136

Query: 194 NGVSKGFGFVRFAERE 241
           +G  +GFGFV F + +
Sbjct: 137 SGKKRGFGFVTFDDHD 152



 Score = 39.7 bits (91), Expect = 0.004
 Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 4/61 (6%)
 Frame = +2

Query: 89  EVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKD-QNGVSKGFGFVRF---AERECAYIA 256
           ++F+GGL    TE +LR  +   G++ D  +M+D  +  S+GFGFV F   AE + A  A
Sbjct: 10  KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 69

Query: 257 K 259
           +
Sbjct: 70  R 70



to top

>RB97D_DROME (Q02926) Ribonucleoprotein RB97D|
          Length = 471

 Score = 42.7 bits (99), Expect = 5e-04
 Identities = 38/137 (27%), Positives = 65/137 (47%), Gaps = 12/137 (8%)
 Frame = +2

Query: 89  EVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKD-QNGVSKGFGFVRFAERECAYIAKRQ 265
           ++F+GGL    TE  L+  +   G++VD+ +M+D     S+GFGF+ + +      A+  
Sbjct: 33  KLFIGGLAPYTTEENLKLFYGQWGKVVDVVVMRDAATKRSRGFGFITYTKSLMVDRAQEN 92

Query: 266 K----NGVELQGKRL-------AVDLSLDQDTLFFGNLCKEWSAEEFEELIHKTFKDVIS 412
           +    +G  ++ KR        + + ++    LF G L K+   EE        F +V+S
Sbjct: 93  RPHIIDGKTVEAKRALPRPERESRETNISVKKLFVGGL-KDNHDEECLREYFLQFGNVVS 151

Query: 413 VDLAMAPNLDSSTSKRR 463
           V L      D +T KRR
Sbjct: 152 VKLL----TDKTTGKRR 164



 Score = 41.6 bits (96), Expect = 0.001
 Identities = 21/67 (31%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
 Frame = +2

Query: 32  RRAASHGDYDEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQ-NGVSK 208
           +RA    + + ++  +   ++FVGGL  +  E  LRE F   G +V ++++ D+  G  +
Sbjct: 105 KRALPRPERESRETNISVKKLFVGGLKDNHDEECLREYFLQFGNVVSVKLLTDKTTGKRR 164

Query: 209 GFGFVRF 229
           GF FV F
Sbjct: 165 GFAFVEF 171



to top

>GRP1_SORBI (Q99069) Glycine-rich RNA-binding protein 1 (Fragment)|
          Length = 142

 Score = 42.7 bits (99), Expect = 5e-04
 Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
 Frame = +2

Query: 131 TLREIFSTCGEIVDLRIMKDQNGV-SKGFGFVRFAERECAYIAKRQKNGVELQGKRLAVD 307
           +L   FST GE+++ +I+ D+    S+GFGFV F+  E    A    NG EL G+ + V+
Sbjct: 2   SLHSAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEEAMRSAIEGMNGKELDGRNITVN 61



to top

>RSP6_CAEEL (Q18409) Probable splicing factor, arginine/serine-rich 6|
           (RNA-binding protein srp-1) (CeSRp20)
          Length = 179

 Score = 42.7 bits (99), Expect = 5e-04
 Identities = 29/79 (36%), Positives = 39/79 (49%)
 Frame = +2

Query: 86  AEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKRQ 265
           A+V+VGGLP  AT   L EIF   G I  + + +       GF FV + +   A  A R 
Sbjct: 3   AKVYVGGLPSDATSQELEEIFDRFGRIRKVWVARR----PPGFAFVEYDDVRDAEDAVRA 58

Query: 266 KNGVELQGKRLAVDLSLDQ 322
            +G  + G R  V+LS  Q
Sbjct: 59  LDGSRICGVRARVELSTGQ 77



to top

>ROA2_HUMAN (P22626) Heterogeneous nuclear ribonucleoproteins A2/B1 (hnRNP A2 /|
           hnRNP B1)
          Length = 353

 Score = 42.7 bits (99), Expect = 5e-04
 Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
 Frame = +2

Query: 17  EPKMDRRAASHGDYDEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKD-Q 193
           EPK   RA +  +  +    V   ++FVGG+     E  LR+ F   G+I  + I+ D Q
Sbjct: 92  EPK---RAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQ 148

Query: 194 NGVSKGFGFVRFAERE 241
           +G  +GFGFV F + +
Sbjct: 149 SGKKRGFGFVTFDDHD 164



 Score = 39.7 bits (91), Expect = 0.004
 Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 4/61 (6%)
 Frame = +2

Query: 89  EVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKD-QNGVSKGFGFVRF---AERECAYIA 256
           ++F+GGL    TE +LR  +   G++ D  +M+D  +  S+GFGFV F   AE + A  A
Sbjct: 22  KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 81

Query: 257 K 259
           +
Sbjct: 82  R 82



to top

>YG5B_YEAST (P53316) Hypothetical 89.5 kDa protein in MGA1-GCN4 intergenic|
           region
          Length = 781

 Score = 42.4 bits (98), Expect = 6e-04
 Identities = 21/78 (26%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
 Frame = +2

Query: 92  VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQ-NGVSKGFGFVRFAERECAYIAKRQK 268
           +FVGG+ +S + G L  +FS  G I+ ++++ D+  G   G+GF+ +     A +  ++ 
Sbjct: 197 IFVGGIAKSLSIGELSFLFSKYGPILSMKLIYDKTKGEPNGYGFISYPLGSQASLCIKEL 256

Query: 269 NGVELQGKRLAVDLSLDQ 322
           NG  + G  L ++  +++
Sbjct: 257 NGRTVNGSTLFINYHVER 274



 Score = 28.9 bits (63), Expect = 6.9
 Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 6/71 (8%)
 Frame = +2

Query: 113 RSATEGTLREIFSTCGEIVDLRIMKDQNG------VSKGFGFVRFAERECAYIAKRQKNG 274
           RS T  +    F+  G +   +   + NG      + KG+GF++    E A  A    NG
Sbjct: 344 RSNTRSSSSVSFNEEGSVESNKSSNNTNGNAQDEDMLKGYGFIKLINHEQALAAIETFNG 403

Query: 275 VELQGKRLAVD 307
               G RL V+
Sbjct: 404 FMWHGNRLVVN 414



to top

>ROA1_BOVIN (P09867) Heterogeneous nuclear ribonucleoprotein A1|
           (Helix-destabilizing protein) (Single-strand RNA-binding
           protein) (hnRNP core protein A1) (Unwinding protein 1)
           (UP1) (Fragment)
          Length = 195

 Score = 42.4 bits (98), Expect = 6e-04
 Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
 Frame = +2

Query: 17  EPKMDRRAASHGDYDEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQ- 193
           EPK   RA S  D       +   ++FVGG+     E  LR+ F   G+I  + IM D+ 
Sbjct: 84  EPK---RAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRG 140

Query: 194 NGVSKGFGFVRFAERE 241
           +G  +GF FV F + +
Sbjct: 141 SGKKRGFAFVTFDDHD 156



 Score = 40.4 bits (93), Expect = 0.002
 Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
 Frame = +2

Query: 89  EVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGV-SKGFGFVRFAERE 241
           ++F+GGL    T+ +LR  F   G + D  +M+D N   S+GFGFV +A  E
Sbjct: 14  KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVE 65



to top

>ROC3_NICSY (P19682) 28 kDa ribonucleoprotein, chloroplast precursor (28RNP)|
          Length = 276

 Score = 42.4 bits (98), Expect = 6e-04
 Identities = 27/94 (28%), Positives = 47/94 (50%), Gaps = 3/94 (3%)
 Frame = +2

Query: 35  RAASHGDYDEQDRRV--KGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKD-QNGVS 205
           +AA  G   E+  R       ++VG +P    +  L ++FS  G++V  R++ D ++G S
Sbjct: 172 KAAPRGSRPERAPRTFQPTYRIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRS 231

Query: 206 KGFGFVRFAERECAYIAKRQKNGVELQGKRLAVD 307
           +GFGFV  +       A    +G  L G+ + V+
Sbjct: 232 RGFGFVTMSSEAEMSEAIANLDGQTLDGRTIRVN 265



 Score = 36.6 bits (83), Expect = 0.033
 Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 2/88 (2%)
 Frame = +2

Query: 50  GDYDEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCG--EIVDLRIMKDQNGVSKGFGFV 223
           G+ +E     + A++FVG LP       L ++F   G  EI ++ I   +   S+GFGFV
Sbjct: 85  GETEEYQEPSEDAKLFVGNLPYDIDSEGLAQLFQQAGVVEIAEV-IYNRETDRSRGFGFV 143

Query: 224 RFAERECAYIAKRQKNGVELQGKRLAVD 307
             +  E A  A    +  +L G+ L V+
Sbjct: 144 TMSTVEEADKAVELYSQYDLNGRLLTVN 171



to top

>G3BP_HUMAN (Q13283) Ras-GTPase-activating protein-binding protein 1 (EC|
           3.6.1.-) (ATP-dependent DNA helicase VIII) (GAP
           SH3-domain-binding protein 1) (G3BP-1) (HDH-VIII)
          Length = 466

 Score = 42.4 bits (98), Expect = 6e-04
 Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
 Frame = +2

Query: 20  PKMDRRAASHGDYDEQD--RRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQ 193
           P+  R A   GD + +   R     ++F+G LP    +  L++ F + G +V+LRI  + 
Sbjct: 316 PRPIREAGEQGDIEPRRMVRHPDSHQLFIGNLPHEVDKSELKDFFQSYGNVVELRI--NS 373

Query: 194 NGVSKGFGFVRFAERE 241
            G    FGFV F + E
Sbjct: 374 GGKLPNFGFVVFDDSE 389



to top

>ROA1_RAT (P04256) Heterogeneous nuclear ribonucleoprotein A1|
           (Helix-destabilizing protein) (Single-strand RNA-binding
           protein) (hnRNP core protein A1) (HDP)
          Length = 319

 Score = 42.4 bits (98), Expect = 6e-04
 Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
 Frame = +2

Query: 17  EPKMDRRAASHGDYDEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQ- 193
           EPK   RA S  D       +   ++FVGG+     E  LR+ F   G+I  + IM D+ 
Sbjct: 84  EPK---RAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRG 140

Query: 194 NGVSKGFGFVRFAERE 241
           +G  +GF FV F + +
Sbjct: 141 SGKKRGFAFVTFDDHD 156



 Score = 40.4 bits (93), Expect = 0.002
 Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
 Frame = +2

Query: 89  EVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGV-SKGFGFVRFAERE 241
           ++F+GGL    T+ +LR  F   G + D  +M+D N   S+GFGFV +A  E
Sbjct: 14  KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVE 65



to top

>ROA1_MOUSE (P49312) Heterogeneous nuclear ribonucleoprotein A1|
           (Helix-destabilizing protein) (Single-strand binding
           protein) (hnRNP core protein A1) (HDP-1)
           (Topoisomerase-inhibitor suppressed)
          Length = 319

 Score = 42.4 bits (98), Expect = 6e-04
 Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
 Frame = +2

Query: 17  EPKMDRRAASHGDYDEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQ- 193
           EPK   RA S  D       +   ++FVGG+     E  LR+ F   G+I  + IM D+ 
Sbjct: 84  EPK---RAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRG 140

Query: 194 NGVSKGFGFVRFAERE 241
           +G  +GF FV F + +
Sbjct: 141 SGKKRGFAFVTFDDHD 156



 Score = 40.4 bits (93), Expect = 0.002
 Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
 Frame = +2

Query: 89  EVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGV-SKGFGFVRFAERE 241
           ++F+GGL    T+ +LR  F   G + D  +M+D N   S+GFGFV +A  E
Sbjct: 14  KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVE 65



to top

>ROA1_HUMAN (P09651) Heterogeneous nuclear ribonucleoprotein A1|
           (Helix-destabilizing protein) (Single-strand RNA-binding
           protein) (hnRNP core protein A1)
          Length = 371

 Score = 42.4 bits (98), Expect = 6e-04
 Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
 Frame = +2

Query: 17  EPKMDRRAASHGDYDEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQ- 193
           EPK   RA S  D       +   ++FVGG+     E  LR+ F   G+I  + IM D+ 
Sbjct: 84  EPK---RAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRG 140

Query: 194 NGVSKGFGFVRFAERE 241
           +G  +GF FV F + +
Sbjct: 141 SGKKRGFAFVTFDDHD 156



 Score = 40.4 bits (93), Expect = 0.002
 Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
 Frame = +2

Query: 89  EVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGV-SKGFGFVRFAERE 241
           ++F+GGL    T+ +LR  F   G + D  +M+D N   S+GFGFV +A  E
Sbjct: 14  KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVE 65



to top

>PPIE_DROME (Q9V3G3) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase|
           E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33)
          Length = 300

 Score = 42.4 bits (98), Expect = 6e-04
 Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
 Frame = +2

Query: 92  VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKD-QNGVSKGFGFVRFAERECAYIAKRQK 268
           ++VGGL    TE  L   F   G+I D+++  D ++   +GF F+ + + E A  A    
Sbjct: 8   IYVGGLADEVTERLLNNAFIPFGDIADIQMPADYESQRHRGFAFIEYEQSEDAAAAIDNM 67

Query: 269 NGVELQGKRLAVDLS 313
           N  EL G+ + V+L+
Sbjct: 68  NDSELCGRTIRVNLA 82



to top

>U2AF2_MOUSE (P26369) Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor|
           65 kDa subunit) (U2 snRNP auxiliary factor large
           subunit)
          Length = 475

 Score = 42.0 bits (97), Expect = 8e-04
 Identities = 21/73 (28%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
 Frame = +2

Query: 89  EVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQ-NGVSKGFGFVRFAERECAYIAKRQ 265
           ++F+GGLP    +  ++E+ ++ G +    ++KD   G+SKG+ F  + +      A   
Sbjct: 260 KLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAG 319

Query: 266 KNGVELQGKRLAV 304
            NG++L  K+L V
Sbjct: 320 LNGMQLGDKKLLV 332



to top

>U2AF2_HUMAN (P26368) Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor|
           65 kDa subunit) (U2 snRNP auxiliary factor large
           subunit) (hU2AF(65))
          Length = 475

 Score = 42.0 bits (97), Expect = 8e-04
 Identities = 21/73 (28%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
 Frame = +2

Query: 89  EVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQ-NGVSKGFGFVRFAERECAYIAKRQ 265
           ++F+GGLP    +  ++E+ ++ G +    ++KD   G+SKG+ F  + +      A   
Sbjct: 260 KLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAG 319

Query: 266 KNGVELQGKRLAV 304
            NG++L  K+L V
Sbjct: 320 LNGMQLGDKKLLV 332



to top

>SART3_MOUSE (Q9JLI8) Squamous cell carcinoma antigen recognized by T-cells 3|
            (SART-3) (mSART-3) (Tumor-rejection antigen SART3)
          Length = 962

 Score = 42.0 bits (97), Expect = 8e-04
 Identities = 35/126 (27%), Positives = 55/126 (43%), Gaps = 21/126 (16%)
 Frame = +2

Query: 92   VFVGGLPRSATEGT--LREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKRQ 265
            VFV  LP S  E    LR +F  CGE+V +R +    G  +G+ +V F E + A  A   
Sbjct: 706  VFVSNLPYSIEEPEVKLRPLFEVCGEVVQIRPIFSNRGDFRGYCYVEFGEEKSAQQALEL 765

Query: 266  KNGVELQGKRLAV-----------------DLSLDQDTLFFGNLCKEWSAEEFEEL--IH 388
               + ++G+ + V                   +L++  LF   L    + EE E++   H
Sbjct: 766  DRKI-VEGRPMFVSPCVDKSKNPDFKVFRYSTTLEKHKLFISGLPFSCTKEELEDICKAH 824

Query: 389  KTFKDV 406
             T KD+
Sbjct: 825  GTVKDL 830



 Score = 40.8 bits (94), Expect = 0.002
 Identities = 21/75 (28%), Positives = 40/75 (53%)
 Frame = +2

Query: 89   EVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKRQK 268
            ++F+ GLP S T+  L +I    G + DLR++ ++ G  KG  +V +     A  A  + 
Sbjct: 802  KLFISGLPFSCTKEELEDICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKM 861

Query: 269  NGVELQGKRLAVDLS 313
            +G+ ++   + V +S
Sbjct: 862  DGMTIRENVIKVAIS 876



to top

>NOP12_YARLI (Q6C2Q7) Nucleolar protein 12|
          Length = 509

 Score = 42.0 bits (97), Expect = 8e-04
 Identities = 21/49 (42%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
 Frame = +2

Query: 92  VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKD-QNGVSKGFGFVRFAE 235
           VFVG L     E +L E FS+CG++  +RI++D +  V KGF +V+F +
Sbjct: 276 VFVGALDFEEQEESLWEAFSSCGDVEYVRIVRDPKTNVGKGFAYVQFKD 324



to top

>RRP2_SPIOL (P82277) Plastid-specific 30S ribosomal protein 2, chloroplast|
           precursor (PSRP-2)
          Length = 260

 Score = 42.0 bits (97), Expect = 8e-04
 Identities = 21/74 (28%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
 Frame = +2

Query: 89  EVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQN-GVSKGFGFVRFAERECAYIAKRQ 265
           +V++G L ++ T   L++ FS  G+++  ++ +      S GFGFV F+  E    A + 
Sbjct: 185 KVYIGNLAKTVTNELLKDFFSEKGKVLGAKVQRTPGTSKSNGFGFVSFSSEEEVEAAIQA 244

Query: 266 KNGVELQGKRLAVD 307
            N   L+G+++ V+
Sbjct: 245 LNNSVLEGQKIRVN 258



 Score = 39.7 bits (91), Expect = 0.004
 Identities = 29/101 (28%), Positives = 47/101 (46%), Gaps = 1/101 (0%)
 Frame = +2

Query: 14  EEPKMDRRAASHGDYDEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQ 193
           EE      A+S  D +   R      ++VG +PR+     LR I    G I    +M D+
Sbjct: 66  EETSSSSTASSSSDGEGARR------LYVGNIPRNLNNDELRTIVEEHGAIEIAEVMYDK 119

Query: 194 -NGVSKGFGFVRFAERECAYIAKRQKNGVELQGKRLAVDLS 313
            +G S+ FGFV     E A     + N  E+ G+++ V+++
Sbjct: 120 YSGRSRRFGFVTMKTVEDANAVIEKLNDTEIGGRKIKVNIT 160



to top

>RO21_XENLA (P51989) Heterogeneous nuclear ribonucleoprotein A2 homolog 1|
           (hnRNP A2(A))
          Length = 346

 Score = 41.6 bits (96), Expect = 0.001
 Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
 Frame = +2

Query: 17  EPKMDRRAASHGDYDEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKD-Q 193
           EPK   RA +  +  +    V   ++FVGG+     E  LRE F   G+I  + I+ D Q
Sbjct: 80  EPK---RAVAREESAKPGAHVTVKKLFVGGIKEDTEEHHLREYFEEYGKIDSIEIITDKQ 136

Query: 194 NGVSKGFGFVRFAERE 241
           +G  +GF FV F + +
Sbjct: 137 SGKKRGFAFVTFDDHD 152



 Score = 38.5 bits (88), Expect = 0.009
 Identities = 19/49 (38%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
 Frame = +2

Query: 89  EVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKD-QNGVSKGFGFVRFA 232
           ++F+GGL    TE +LR  +   G + D  +M+D  +  S+GFGFV F+
Sbjct: 10  KLFIGGLSFETTEESLRNYYEQWGTLTDCVVMRDPASKRSRGFGFVTFS 58


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,765,194
Number of Sequences: 219361
Number of extensions: 1116369
Number of successful extensions: 4130
Number of sequences better than 10.0: 379
Number of HSP's better than 10.0 without gapping: 3631
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3946
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3072927439
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top