ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd2j08 |
|---|---|
| Clone Library Name | barley_pub |
>ACF_RAT (Q923K9) APOBEC1 complementation factor (APOBEC1-stimulating| protein) Length = 594 Score = 68.6 bits (166), Expect = 8e-12 Identities = 43/128 (33%), Positives = 68/128 (53%), Gaps = 1/128 (0%) Frame = +2 Query: 80 KGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAK 259 +G E+F+G LPR E L + G+I ++R+M D NG ++G+ FV F+ ++ A A Sbjct: 54 RGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGNNRGYAFVTFSNKQEAKNAI 113 Query: 260 RQKNGVELQ-GKRLAVDLSLDQDTLFFGNLCKEWSAEEFEELIHKTFKDVISVDLAMAPN 436 +Q N E++ G+ L V S+D LF G + K EE + K + V VD+ + P+ Sbjct: 114 KQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGV--VDVIVYPS 171 Query: 437 LDSSTSKR 460 T R Sbjct: 172 AADKTKNR 179
>ACF_MOUSE (Q5YD48) APOBEC1 complementation factor (APOBEC1-stimulating| protein) Length = 595 Score = 68.2 bits (165), Expect = 1e-11 Identities = 43/128 (33%), Positives = 68/128 (53%), Gaps = 1/128 (0%) Frame = +2 Query: 80 KGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAK 259 +G E+F+G LPR E L + G+I ++R+M D NG ++G+ FV F+ ++ A A Sbjct: 54 RGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRLMMDFNGNNRGYAFVTFSNKQEAKNAI 113 Query: 260 RQKNGVELQ-GKRLAVDLSLDQDTLFFGNLCKEWSAEEFEELIHKTFKDVISVDLAMAPN 436 +Q N E++ G+ L V S+D LF G + K EE + K + V VD+ + P+ Sbjct: 114 KQLNNYEIRTGRLLGVCASVDNCRLFRGGIPKTKKREEILSEMKKVTEGV--VDVIVYPS 171 Query: 437 LDSSTSKR 460 T R Sbjct: 172 AADKTKNR 179
>ACF_HUMAN (Q9NQ94) APOBEC1 complementation factor (APOBEC1-stimulating| protein) Length = 594 Score = 67.0 bits (162), Expect = 2e-11 Identities = 43/128 (33%), Positives = 67/128 (52%), Gaps = 1/128 (0%) Frame = +2 Query: 80 KGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAK 259 +G E+F+G LPR E L + G+I ++R+M D NG ++G+ FV F+ + A A Sbjct: 54 RGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGNNRGYAFVTFSNKVEAKNAI 113 Query: 260 RQKNGVELQ-GKRLAVDLSLDQDTLFFGNLCKEWSAEEFEELIHKTFKDVISVDLAMAPN 436 +Q N E++ G+ L V S+D LF G + K EE + K + V VD+ + P+ Sbjct: 114 KQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGV--VDVIVYPS 171 Query: 437 LDSSTSKR 460 T R Sbjct: 172 AADKTKNR 179
>ACF_PONPY (Q5R9H4) APOBEC1 complementation factor (APOBEC1-stimulating| protein) Length = 587 Score = 66.6 bits (161), Expect = 3e-11 Identities = 43/128 (33%), Positives = 67/128 (52%), Gaps = 1/128 (0%) Frame = +2 Query: 80 KGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAK 259 +G E+F+G LPR E L + G+I ++R+M D NG ++G+ FV F+ + A A Sbjct: 54 RGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGNNRGYAFVTFSNKLEAKNAI 113 Query: 260 RQKNGVELQ-GKRLAVDLSLDQDTLFFGNLCKEWSAEEFEELIHKTFKDVISVDLAMAPN 436 +Q N E++ G+ L V S+D LF G + K EE + K + V VD+ + P+ Sbjct: 114 KQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGV--VDVIVYPS 171 Query: 437 LDSSTSKR 460 T R Sbjct: 172 AADKTKNR 179
>HNRPQ_MOUSE (Q7TMK9) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)| (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic RNA-interacting protein) (Glycine-and tyrosine-rich RNA-binding protein) (GRY-RBP) (NS1-associated protein 1) (pp68) Length = 623 Score = 66.2 bits (160), Expect = 4e-11 Identities = 41/120 (34%), Positives = 64/120 (53%), Gaps = 2/120 (1%) Frame = +2 Query: 83 GAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQ-NGVSKGFGFVRFAERECAYIAK 259 G E+FVG +PR E L +F G I DLR+M D G+++G+ FV F +E A A Sbjct: 161 GTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAV 220 Query: 260 RQKNGVELQ-GKRLAVDLSLDQDTLFFGNLCKEWSAEEFEELIHKTFKDVISVDLAMAPN 436 + N E++ GK + V +S+ + LF G++ K + E+ E K + + V L P+ Sbjct: 221 KLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPD 280 Score = 38.5 bits (88), Expect = 0.009 Identities = 21/71 (29%), Positives = 38/71 (53%) Frame = +2 Query: 92 VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKRQKN 271 +FV L + TE L + FS G++ ++ +KD + F+ F ER+ A A + N Sbjct: 340 LFVRNLANTVTEEILEKSFSQFGKLERVKKLKD-------YAFIHFDERDGAVKAMEEMN 392 Query: 272 GVELQGKRLAV 304 G +L+G+ + + Sbjct: 393 GKDLEGENIEI 403 Score = 30.0 bits (66), Expect = 3.1 Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 3/66 (4%) Frame = +2 Query: 77 VKGAEVFVGGLPRSATEGTLREIFSTCGE---IVDLRIMKDQNGVSKGFGFVRFAERECA 247 V +FVG +P+S T+ + E FS E V L D ++GF F+ + + + A Sbjct: 240 VANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTA 299 Query: 248 YIAKRQ 265 A+R+ Sbjct: 300 AQARRR 305
>HNRPQ_HUMAN (O60506) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)| (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic RNA-interacting protein) (Glycine-and tyrosine-rich RNA-binding protein) (GRY-RBP) (NS1-associated protein 1) Length = 623 Score = 66.2 bits (160), Expect = 4e-11 Identities = 41/120 (34%), Positives = 64/120 (53%), Gaps = 2/120 (1%) Frame = +2 Query: 83 GAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQ-NGVSKGFGFVRFAERECAYIAK 259 G E+FVG +PR E L +F G I DLR+M D G+++G+ FV F +E A A Sbjct: 161 GTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAV 220 Query: 260 RQKNGVELQ-GKRLAVDLSLDQDTLFFGNLCKEWSAEEFEELIHKTFKDVISVDLAMAPN 436 + N E++ GK + V +S+ + LF G++ K + E+ E K + + V L P+ Sbjct: 221 KLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPD 280 Score = 38.9 bits (89), Expect = 0.007 Identities = 21/71 (29%), Positives = 38/71 (53%) Frame = +2 Query: 92 VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKRQKN 271 +FV L + TE L + FS G++ ++ +KD + F+ F ER+ A A + N Sbjct: 340 LFVRNLANTVTEEILEKAFSQFGKLERVKKLKD-------YAFIHFDERDGAVKAMEEMN 392 Query: 272 GVELQGKRLAV 304 G +L+G+ + + Sbjct: 393 GKDLEGENIEI 403 Score = 30.0 bits (66), Expect = 3.1 Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 3/66 (4%) Frame = +2 Query: 77 VKGAEVFVGGLPRSATEGTLREIFSTCGE---IVDLRIMKDQNGVSKGFGFVRFAERECA 247 V +FVG +P+S T+ + E FS E V L D ++GF F+ + + + A Sbjct: 240 VANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTA 299 Query: 248 YIAKRQ 265 A+R+ Sbjct: 300 AQARRR 305
>HNRPQ_RAT (Q7TP47) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)| (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic RNA-interacting protein) (Liver regeneration-related protein LRRG077) Length = 533 Score = 66.2 bits (160), Expect = 4e-11 Identities = 41/120 (34%), Positives = 64/120 (53%), Gaps = 2/120 (1%) Frame = +2 Query: 83 GAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQ-NGVSKGFGFVRFAERECAYIAK 259 G E+FVG +PR E L +F G I DLR+M D G+++G+ FV F +E A A Sbjct: 71 GTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAV 130 Query: 260 RQKNGVELQ-GKRLAVDLSLDQDTLFFGNLCKEWSAEEFEELIHKTFKDVISVDLAMAPN 436 + N E++ GK + V +S+ + LF G++ K + E+ E K + + V L P+ Sbjct: 131 KLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPD 190 Score = 38.5 bits (88), Expect = 0.009 Identities = 21/71 (29%), Positives = 38/71 (53%) Frame = +2 Query: 92 VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKRQKN 271 +FV L + TE L + FS G++ ++ +KD + F+ F ER+ A A + N Sbjct: 250 LFVRNLANTVTEEILEKSFSQFGKLERVKKLKD-------YAFIHFDERDGAVKAMEEMN 302 Query: 272 GVELQGKRLAV 304 G +L+G+ + + Sbjct: 303 GKDLEGENIEI 313 Score = 30.0 bits (66), Expect = 3.1 Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 3/66 (4%) Frame = +2 Query: 77 VKGAEVFVGGLPRSATEGTLREIFSTCGE---IVDLRIMKDQNGVSKGFGFVRFAERECA 247 V +FVG +P+S T+ + E FS E V L D ++GF F+ + + + A Sbjct: 150 VANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTA 209 Query: 248 YIAKRQ 265 A+R+ Sbjct: 210 AQARRR 215
>HNRPR_HUMAN (O43390) Heterogeneous nuclear ribonucleoprotein R (hnRNP R)| Length = 633 Score = 65.1 bits (157), Expect = 9e-11 Identities = 41/120 (34%), Positives = 64/120 (53%), Gaps = 2/120 (1%) Frame = +2 Query: 83 GAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQ-NGVSKGFGFVRFAERECAYIAK 259 G EVFVG +PR E L +F G I DLR+M D +G ++G+ F+ F +E A A Sbjct: 164 GTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAV 223 Query: 260 RQKNGVELQ-GKRLAVDLSLDQDTLFFGNLCKEWSAEEFEELIHKTFKDVISVDLAMAPN 436 + + E++ GK L V +S+ + LF G++ K + E E K + ++ V L P+ Sbjct: 224 KLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPD 283
>CSTFT_MOUSE (Q8C7E9) Cleavage stimulation factor, 64 kDa subunit, tau variant| (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit, tau variant) (TauCstF-64) Length = 632 Score = 62.8 bits (151), Expect = 4e-10 Identities = 32/73 (43%), Positives = 44/73 (60%), Gaps = 1/73 (1%) Frame = +2 Query: 92 VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKD-QNGVSKGFGFVRFAERECAYIAKRQK 268 VFVG +P ATE L++IFS G +V R++ D + G KG+GF + ++E A A R Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77 Query: 269 NGVELQGKRLAVD 307 NG E G+ L VD Sbjct: 78 NGREFSGRALRVD 90
>CSTFT_HUMAN (Q9H0L4) Cleavage stimulation factor, 64 kDa subunit, tau variant| (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit, tau variant) (TauCstF-64) Length = 616 Score = 62.8 bits (151), Expect = 4e-10 Identities = 32/73 (43%), Positives = 44/73 (60%), Gaps = 1/73 (1%) Frame = +2 Query: 92 VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKD-QNGVSKGFGFVRFAERECAYIAKRQK 268 VFVG +P ATE L++IFS G +V R++ D + G KG+GF + ++E A A R Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77 Query: 269 NGVELQGKRLAVD 307 NG E G+ L VD Sbjct: 78 NGREFSGRALRVD 90
>CSTF2_PONPY (Q5RDA3) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 577 Score = 62.4 bits (150), Expect = 6e-10 Identities = 32/73 (43%), Positives = 44/73 (60%), Gaps = 1/73 (1%) Frame = +2 Query: 92 VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKD-QNGVSKGFGFVRFAERECAYIAKRQK 268 VFVG +P ATE L++IFS G +V R++ D + G KG+GF + ++E A A R Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77 Query: 269 NGVELQGKRLAVD 307 NG E G+ L VD Sbjct: 78 NGREFSGRALRVD 90
>CSTF2_HUMAN (P33240) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 577 Score = 62.4 bits (150), Expect = 6e-10 Identities = 32/73 (43%), Positives = 44/73 (60%), Gaps = 1/73 (1%) Frame = +2 Query: 92 VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKD-QNGVSKGFGFVRFAERECAYIAKRQK 268 VFVG +P ATE L++IFS G +V R++ D + G KG+GF + ++E A A R Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77 Query: 269 NGVELQGKRLAVD 307 NG E G+ L VD Sbjct: 78 NGREFSGRALRVD 90
>CSTF2_BOVIN (Q8HXM1) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 572 Score = 62.4 bits (150), Expect = 6e-10 Identities = 32/73 (43%), Positives = 44/73 (60%), Gaps = 1/73 (1%) Frame = +2 Query: 92 VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKD-QNGVSKGFGFVRFAERECAYIAKRQK 268 VFVG +P ATE L++IFS G +V R++ D + G KG+GF + ++E A A R Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77 Query: 269 NGVELQGKRLAVD 307 NG E G+ L VD Sbjct: 78 NGREFSGRALRVD 90
>CSTF2_MOUSE (Q8BIQ5) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 580 Score = 62.4 bits (150), Expect = 6e-10 Identities = 32/73 (43%), Positives = 44/73 (60%), Gaps = 1/73 (1%) Frame = +2 Query: 92 VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKD-QNGVSKGFGFVRFAERECAYIAKRQK 268 VFVG +P ATE L++IFS G +V R++ D + G KG+GF + ++E A A R Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77 Query: 269 NGVELQGKRLAVD 307 NG E G+ L VD Sbjct: 78 NGREFSGRALRVD 90
>PABP5_ARATH (Q05196) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 668 Score = 61.6 bits (148), Expect = 1e-09 Identities = 42/130 (32%), Positives = 64/130 (49%), Gaps = 5/130 (3%) Frame = +2 Query: 92 VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKRQKN 271 V+V LP+ T+ L++ F G+I +MKDQ+G S+ FGFV F E A +A + N Sbjct: 227 VYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVEKMN 286 Query: 272 GVELQGKRLAVDLSLDQDTLFFGNLCKEWSAEE-----FEELIHKTFKDVISVDLAMAPN 436 G+ SL +D L+ G K+ EE FE+ F+ + +L + N Sbjct: 287 GI-----------SLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYL-KN 334 Query: 437 LDSSTSKRRL 466 LD S + +L Sbjct: 335 LDDSVNDEKL 344 Score = 55.1 bits (131), Expect = 9e-08 Identities = 33/113 (29%), Positives = 58/113 (51%), Gaps = 12/113 (10%) Frame = +2 Query: 11 GEEPKMDRRAASHGDYDEQDRR------------VKGAEVFVGGLPRSATEGTLREIFST 154 GE+ RA D +E+ RR ++G+ +++ L S + L+E+FS Sbjct: 291 GEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDEKLKEMFSE 350 Query: 155 CGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKRQKNGVELQGKRLAVDLS 313 G + ++M + G+S+GFGFV ++ E A +A ++ NG + K L V L+ Sbjct: 351 YGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYVALA 403 Score = 47.8 bits (112), Expect = 1e-05 Identities = 29/82 (35%), Positives = 41/82 (50%) Frame = +2 Query: 59 DEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAER 238 D R VF+ L S L E FS+ G I+ ++ D G SKG+GFV+F + Sbjct: 123 DPSTRLSGKGNVFIKNLDASIDNKALYETFSSFGTILSCKVAMDVVGRSKGYGFVQFEKE 182 Query: 239 ECAYIAKRQKNGVELQGKRLAV 304 E A A + NG+ L K++ V Sbjct: 183 ETAQAAIDKLNGMLLNDKQVFV 204 Score = 38.9 bits (89), Expect = 0.007 Identities = 31/121 (25%), Positives = 55/121 (45%), Gaps = 7/121 (5%) Frame = +2 Query: 86 AEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKRQ 265 + ++VG L S E L ++F+ + +LR+ +D S G+ +V FA E A A Sbjct: 45 SSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDLTHRSLGYAYVNFANPEDASRAMES 104 Query: 266 KNGVELQGKRLAVDLS-LDQDTLFFGN---LCKEWSAEEFEELIHKTFKD---VISVDLA 424 N ++ + + + LS D T G K A + +++TF ++S +A Sbjct: 105 LNYAPIRDRPIRIMLSNRDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFGTILSCKVA 164 Query: 425 M 427 M Sbjct: 165 M 165
>TADBP_MOUSE (Q921F2) TAR DNA-binding protein 43 (TDP-43)| Length = 414 Score = 58.9 bits (141), Expect = 6e-09 Identities = 36/108 (33%), Positives = 59/108 (54%), Gaps = 8/108 (7%) Frame = +2 Query: 80 KGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKD-QNGVSKGFGFVRFAERECAYIA 256 K +++ V GLP TE L++ FST GE++ +++ KD + G SKGFGFVRF E E Sbjct: 102 KTSDLIVLGLPWKTTEQDLKDYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKV 161 Query: 257 KRQKNGVE-------LQGKRLAVDLSLDQDTLFFGNLCKEWSAEEFEE 379 Q++ ++ L + + D L +F G ++ +AEE ++ Sbjct: 162 MSQRHMIDGRWCDCKLPNSKQSPDEPLRSRKVFVGRCTEDMTAEELQQ 209 Score = 33.1 bits (74), Expect = 0.37 Identities = 20/60 (33%), Positives = 30/60 (50%) Frame = +2 Query: 68 DRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECA 247 D ++ +VFVG T L++ F GE+VD+ I K + F FV FA+ + A Sbjct: 185 DEPLRSRKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP----FRAFAFVTFADDKVA 240
>TADBP_HUMAN (Q13148) TAR DNA-binding protein 43 (TDP-43)| Length = 414 Score = 58.9 bits (141), Expect = 6e-09 Identities = 39/120 (32%), Positives = 63/120 (52%), Gaps = 8/120 (6%) Frame = +2 Query: 80 KGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKD-QNGVSKGFGFVRFAERECAYIA 256 K +++ V GLP TE L+E FST GE++ +++ KD + G SKGFGFVRF E E Sbjct: 102 KTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKV 161 Query: 257 KRQKNGVE-------LQGKRLAVDLSLDQDTLFFGNLCKEWSAEEFEELIHKTFKDVISV 415 Q++ ++ L + + D L +F G ++ + +E E + + DV+ V Sbjct: 162 MSQRHMIDGRWCDCKLPNSKQSQDEPLRSRKVFVGRCTEDMTEDELREFFSQ-YGDVMDV 220 Score = 40.4 bits (93), Expect = 0.002 Identities = 23/61 (37%), Positives = 33/61 (54%) Frame = +2 Query: 65 QDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAEREC 244 QD ++ +VFVG TE LRE FS G+++D+ I K + F FV FA+ + Sbjct: 184 QDEPLRSRKVFVGRCTEDMTEDELREFFSQYGDVMDVFIPKP----FRAFAFVTFADDQI 239 Query: 245 A 247 A Sbjct: 240 A 240
>RBM23_HUMAN (Q86U06) Probable RNA-binding protein 23 (RNA-binding motif protein| 23) (RNA-binding region-containing protein 4) (Splicing factor SF2) Length = 439 Score = 58.9 bits (141), Expect = 6e-09 Identities = 32/72 (44%), Positives = 46/72 (63%), Gaps = 1/72 (1%) Frame = +2 Query: 92 VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQN-GVSKGFGFVRFAERECAYIAKRQK 268 ++VG L + TE LR IF G+I ++ +MKD + G SKG+GF+ F++ ECA A Q Sbjct: 265 LYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQL 324 Query: 269 NGVELQGKRLAV 304 NG EL G+ + V Sbjct: 325 NGFELAGRPMRV 336 Score = 33.9 bits (76), Expect = 0.22 Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 1/81 (1%) Frame = +2 Query: 59 DEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNG-VSKGFGFVRFAE 235 +E+D R VF L L + FS G++ D+RI+ D+N SKG +V F E Sbjct: 161 EERDART----VFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCE 216 Query: 236 RECAYIAKRQKNGVELQGKRL 298 + +A + L G+RL Sbjct: 217 IQSVPLA------IGLTGQRL 231
>RBMX2_MOUSE (Q8R0F5) RNA-binding motif protein, X-linked 2| Length = 326 Score = 58.9 bits (141), Expect = 6e-09 Identities = 29/75 (38%), Positives = 49/75 (65%), Gaps = 1/75 (1%) Frame = +2 Query: 86 AEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKD-QNGVSKGFGFVRFAERECAYIAKR 262 A +FVGGLP TEG + +FS GEIV++ +++D + G SKGF F+ + ++ +A Sbjct: 36 AWIFVGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAVD 95 Query: 263 QKNGVELQGKRLAVD 307 NG++++G+ + VD Sbjct: 96 NFNGIKIKGRTIRVD 110
>SXL_CHRRU (O97018) Sex-lethal homolog| Length = 307 Score = 58.5 bits (140), Expect = 8e-09 Identities = 43/132 (32%), Positives = 63/132 (47%), Gaps = 8/132 (6%) Frame = +2 Query: 20 PKMDRRAASHGDYDEQDRR-VKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKD-Q 193 P + + + G D D + G + V LP+ T+ L +F TCG I RIMKD + Sbjct: 62 PAISTNSVNSGGGDCGDNQGCNGTNLIVNYLPQDMTDRELYALFRTCGPINTCRIMKDYK 121 Query: 194 NGVSKGFGFVRFAERECAYIAKRQKNGVELQGKRLAVDL------SLDQDTLFFGNLCKE 355 G S G+ FV FA A A + NGV ++ KRL V S+ L+ NL + Sbjct: 122 TGYSFGYAFVDFASEIDAQNAIKSLNGVTVRNKRLKVSYARPGGESIKDTNLYVTNLPRT 181 Query: 356 WSAEEFEELIHK 391 + +E E++ K Sbjct: 182 ITDDELEKIFGK 193
>RBMX2_HUMAN (Q9Y388) RNA-binding motif protein, X-linked 2| Length = 322 Score = 58.2 bits (139), Expect = 1e-08 Identities = 30/88 (34%), Positives = 53/88 (60%), Gaps = 1/88 (1%) Frame = +2 Query: 47 HGDYDEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKD-QNGVSKGFGFV 223 H +Y + A +F+GGLP TEG + +FS GEIV++ +++D + G SKGF F+ Sbjct: 29 HSEYKDS------AWIFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFL 82 Query: 224 RFAERECAYIAKRQKNGVELQGKRLAVD 307 + ++ +A NG++++G+ + VD Sbjct: 83 CYEDQRSTILAVDNFNGIKIKGRTIRVD 110
>RNPC2_MOUSE (Q8VH51) RNA-binding region-containing protein 2 (Coactivator of| activating protein 1 and estrogen receptors) (Coactivator of AP-1 and ERs) (Transcription coactivator CAPER) Length = 530 Score = 58.2 bits (139), Expect = 1e-08 Identities = 31/72 (43%), Positives = 44/72 (61%), Gaps = 1/72 (1%) Frame = +2 Query: 92 VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKD-QNGVSKGFGFVRFAERECAYIAKRQK 268 ++VG L + TE LR IF G I +++M D + G SKG+GF+ F++ ECA A Q Sbjct: 252 LYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQL 311 Query: 269 NGVELQGKRLAV 304 NG EL G+ + V Sbjct: 312 NGFELAGRPMKV 323 Score = 32.0 bits (71), Expect = 0.82 Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 1/60 (1%) Frame = +2 Query: 59 DEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNG-VSKGFGFVRFAE 235 +E+D R VF L L E FST G++ D+R++ D+N S+G +V F + Sbjct: 148 EERDART----VFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSRGIAYVEFVD 203
>RNPC2_HUMAN (Q14498) RNA-binding region-containing protein 2 (Hepatocellular| carcinoma protein 1) (Splicing factor HCC1) Length = 530 Score = 58.2 bits (139), Expect = 1e-08 Identities = 31/72 (43%), Positives = 44/72 (61%), Gaps = 1/72 (1%) Frame = +2 Query: 92 VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKD-QNGVSKGFGFVRFAERECAYIAKRQK 268 ++VG L + TE LR IF G I +++M D + G SKG+GF+ F++ ECA A Q Sbjct: 252 LYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQL 311 Query: 269 NGVELQGKRLAV 304 NG EL G+ + V Sbjct: 312 NGFELAGRPMKV 323 Score = 33.1 bits (74), Expect = 0.37 Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 1/60 (1%) Frame = +2 Query: 59 DEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNG-VSKGFGFVRFAE 235 +E+D R VF L L E FST G++ D+R++ D+N SKG +V F + Sbjct: 148 EERDART----VFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVD 203
>PABP_SCHPO (P31209) Polyadenylate-binding protein (Poly(A)-binding protein)| (PABP) Length = 653 Score = 58.2 bits (139), Expect = 1e-08 Identities = 29/71 (40%), Positives = 40/71 (56%) Frame = +2 Query: 92 VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKRQKN 271 V++ L TE ++F GEI L ++KDQN +GFGFV +A ECA A + N Sbjct: 263 VYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDELN 322 Query: 272 GVELQGKRLAV 304 E +GK+L V Sbjct: 323 DKEYKGKKLYV 333 Score = 49.3 bits (116), Expect = 5e-06 Identities = 37/140 (26%), Positives = 62/140 (44%), Gaps = 14/140 (10%) Frame = +2 Query: 59 DEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAER 238 D R++ VF+ L + L + FS G+I+ ++ D+ G +KG+GFV F Sbjct: 159 DPSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDELGNAKGYGFVHFDSV 218 Query: 239 ECAYIAKRQKNGVELQGKRLAVD--------------LSLDQDTLFFGNLCKEWSAEEFE 376 E A A NG+ L K++ V L + ++ NL E + +EF Sbjct: 219 ESANAAIEHVNGMLLNDKKVYVGHHVSRRERQSKVEALKANFTNVYIKNLDTEITEQEFS 278 Query: 377 ELIHKTFKDVISVDLAMAPN 436 +L + F ++ S+ L N Sbjct: 279 DLFGQ-FGEITSLSLVKDQN 297 Score = 48.5 bits (114), Expect = 8e-06 Identities = 30/84 (35%), Positives = 42/84 (50%) Frame = +2 Query: 62 EQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERE 241 E+ + +G +F+ L + L+ FS G I +IM D+ G SKGFGFV + E Sbjct: 356 EKMNKYQGVNLFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQGKSKGFGFVCYTTPE 415 Query: 242 CAYIAKRQKNGVELQGKRLAVDLS 313 A A + N L GK L V L+ Sbjct: 416 EANKAVTEMNQRMLAGKPLYVALA 439 Score = 35.8 bits (81), Expect = 0.057 Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 1/70 (1%) Frame = +2 Query: 86 AEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQ-NGVSKGFGFVRFAERECAYIAKR 262 A ++VG L S TE L E+F++ G + +R+ +D S G+ +V F E A Sbjct: 80 ASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALD 139 Query: 263 QKNGVELQGK 292 + N ++G+ Sbjct: 140 ELNYTLIKGR 149
>SXL_MUSDO (O17310) Sex-lethal homolog| Length = 324 Score = 58.2 bits (139), Expect = 1e-08 Identities = 39/112 (34%), Positives = 56/112 (50%), Gaps = 7/112 (6%) Frame = +2 Query: 77 VKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKD-QNGVSKGFGFVRFAERECAYI 253 V G + V LP+ T+ L +F TCG I RIMKD + G S G+ FV FA A Sbjct: 99 VNGTNLIVNYLPQDMTDRELYALFRTCGPINTCRIMKDYKTGYSFGYAFVDFASEIDAQN 158 Query: 254 AKRQKNGVELQGKRLAVDL------SLDQDTLFFGNLCKEWSAEEFEELIHK 391 A + NG+ ++ KRL V S+ L+ NL + + +E E++ K Sbjct: 159 AIKTVNGITVRNKRLKVSYARPGGESIKDTNLYVTNLPRTITDDELEKIFGK 210
>TRA2B_RAT (P62997) Arginine/serine-rich splicing factor 10| (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein homolog) (RA301) Length = 288 Score = 57.8 bits (138), Expect = 1e-08 Identities = 34/74 (45%), Positives = 44/74 (59%), Gaps = 1/74 (1%) Frame = +2 Query: 98 VGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGV-SKGFGFVRFAERECAYIAKRQKNG 274 V GL TE LRE+FS G I D+ I+ DQ S+GF FV F + A AK + NG Sbjct: 122 VFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANG 181 Query: 275 VELQGKRLAVDLSL 316 +EL G+R+ VD S+ Sbjct: 182 MELDGRRIRVDFSI 195
>TRA2B_MOUSE (P62996) Arginine/serine-rich splicing factor 10| (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein homolog) (Silica-induced gene 41 protein) (SIG-41) Length = 288 Score = 57.8 bits (138), Expect = 1e-08 Identities = 34/74 (45%), Positives = 44/74 (59%), Gaps = 1/74 (1%) Frame = +2 Query: 98 VGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGV-SKGFGFVRFAERECAYIAKRQKNG 274 V GL TE LRE+FS G I D+ I+ DQ S+GF FV F + A AK + NG Sbjct: 122 VFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANG 181 Query: 275 VELQGKRLAVDLSL 316 +EL G+R+ VD S+ Sbjct: 182 MELDGRRIRVDFSI 195
>TRA2B_HUMAN (P62995) Arginine/serine-rich splicing factor 10| (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein homolog) Length = 288 Score = 57.8 bits (138), Expect = 1e-08 Identities = 34/74 (45%), Positives = 44/74 (59%), Gaps = 1/74 (1%) Frame = +2 Query: 98 VGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGV-SKGFGFVRFAERECAYIAKRQKNG 274 V GL TE LRE+FS G I D+ I+ DQ S+GF FV F + A AK + NG Sbjct: 122 VFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANG 181 Query: 275 VELQGKRLAVDLSL 316 +EL G+R+ VD S+ Sbjct: 182 MELDGRRIRVDFSI 195
>PABP_YEAST (P04147) Polyadenylate-binding protein, cytoplasmic and nuclear| (Poly(A)-binding protein) (PABP) (ARS consensus-binding protein ACBP-67) (Polyadenylate tail-binding protein) Length = 576 Score = 57.4 bits (137), Expect = 2e-08 Identities = 42/135 (31%), Positives = 62/135 (45%), Gaps = 14/135 (10%) Frame = +2 Query: 59 DEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAER 238 D R+ +F+ L L + FS G+I+ +I D+NG SKGFGFV F E Sbjct: 116 DPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEE 175 Query: 239 ECAYIAKRQKNGVELQGKRLAV---------DLSLDQ-----DTLFFGNLCKEWSAEEFE 376 A A NG+ L G+ + V D L++ L+ N+ E + E+F+ Sbjct: 176 GAAKEAIDALNGMLLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETTDEQFQ 235 Query: 377 ELIHKTFKDVISVDL 421 EL K F ++S L Sbjct: 236 ELFAK-FGPIVSASL 249 Score = 53.1 bits (126), Expect = 3e-07 Identities = 32/88 (36%), Positives = 48/88 (54%) Frame = +2 Query: 62 EQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERE 241 E+ + +G +FV L S + L E F+ G I ++M+ +NG SKGFGFV F+ E Sbjct: 313 EKMAKYQGVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTENGKSKGFGFVCFSTPE 372 Query: 242 CAYIAKRQKNGVELQGKRLAVDLSLDQD 325 A A +KN + GK L V ++ +D Sbjct: 373 EATKAITEKNQQIVAGKPLYVAIAQRKD 400 Score = 47.4 bits (111), Expect = 2e-05 Identities = 26/84 (30%), Positives = 42/84 (50%) Frame = +2 Query: 53 DYDEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFA 232 D ++ + ++V + T+ +E+F+ G IV + KD +G KGFGFV + Sbjct: 207 DSQLEETKAHYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYE 266 Query: 233 ERECAYIAKRQKNGVELQGKRLAV 304 + E A A N EL G++L V Sbjct: 267 KHEDAVKAVEALNDSELNGEKLYV 290 Score = 42.4 bits (98), Expect = 6e-04 Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 1/89 (1%) Frame = +2 Query: 29 DRRAASHGDYDEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQ-NGVS 205 D++ A+ G + Q A ++VG L S +E L +IFS G + +R+ +D S Sbjct: 19 DQKQAATGS-ESQSVENSSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTS 77 Query: 206 KGFGFVRFAERECAYIAKRQKNGVELQGK 292 G+ +V F + E A Q N ++G+ Sbjct: 78 LGYAYVNFNDHEAGRKAIEQLNYTPIKGR 106
>RBM34_RAT (Q5M9F1) RNA-binding protein 34 (RNA-binding motif protein 34)| Length = 428 Score = 57.4 bits (137), Expect = 2e-08 Identities = 32/81 (39%), Positives = 48/81 (59%), Gaps = 1/81 (1%) Frame = +2 Query: 92 VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQ-NGVSKGFGFVRFAERECAYIAKRQK 268 VFVG LP E L E F CG IV +RI+++ GV +GFG+V F + ++A + Sbjct: 287 VFVGNLPYRVDESALEEHFLDCGSIVAVRIVRNPLTGVGRGFGYVLFENTDAVHLALKLN 346 Query: 269 NGVELQGKRLAVDLSLDQDTL 331 N EL G++L V S++++ L Sbjct: 347 NS-ELMGRKLRVMRSVNKEKL 366
>GRP2_ARATH (Q9SVM8) Glycine-rich RNA-binding protein 2, mitochondrial| precursor (AtGRP2) Length = 158 Score = 57.0 bits (136), Expect = 2e-08 Identities = 28/84 (33%), Positives = 51/84 (60%), Gaps = 1/84 (1%) Frame = +2 Query: 74 RVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKD-QNGVSKGFGFVRFAERECAY 250 R+ ++F+GGL + +LR+ F+ G++VD +++ D + G S+GFGFV F + A Sbjct: 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAAT 90 Query: 251 IAKRQKNGVELQGKRLAVDLSLDQ 322 A + +G EL G+ + V+ + D+ Sbjct: 91 AAISEMDGKELNGRHIRVNPANDR 114
>DND1_XENLA (Q6DCB7) Dead end protein homolog 1| Length = 371 Score = 56.6 bits (135), Expect = 3e-08 Identities = 33/124 (26%), Positives = 62/124 (50%), Gaps = 1/124 (0%) Frame = +2 Query: 77 VKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIA 256 V G+EVF+G +P+ E L +F + G++ + R+M +G+++GF + R+ R A A Sbjct: 74 VSGSEVFIGKIPQDIYEDKLIPLFQSVGKLYEFRLMMTFSGLNRGFAYARYISRRQAISA 133 Query: 257 KRQKNGVEL-QGKRLAVDLSLDQDTLFFGNLCKEWSAEEFEELIHKTFKDVISVDLAMAP 433 NG E+ +G + V S ++ L L + + ++ + V S+ L +P Sbjct: 134 IMSLNGFEITKGCCIVVCRSTEKSELALDGLPGNFDENMLKNVLDEVTSGVSSISLHPSP 193 Query: 434 NLDS 445 +S Sbjct: 194 TKES 197
>MYEF2_MOUSE (Q8C854) Myelin expression factor 2 (MyEF-2) (MEF-2)| Length = 591 Score = 56.6 bits (135), Expect = 3e-08 Identities = 34/82 (41%), Positives = 48/82 (58%) Frame = +2 Query: 80 KGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAK 259 KG ++FV LP T L+E FS CG ++ I K +NG SKG G VRF E A A Sbjct: 512 KGNQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEI-KMENGKSKGCGTVRFESAESAEKAC 570 Query: 260 RQKNGVELQGKRLAVDLSLDQD 325 R NG+++ G+ +D+ LD++ Sbjct: 571 RIMNGIKISGRE--IDVRLDRN 590 Score = 35.0 bits (79), Expect = 0.097 Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 1/72 (1%) Frame = +2 Query: 92 VFVGGLPRSATEGTLREIF-STCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKRQK 268 VF+ +P ++++ GE+ + + KD G S+G G V F + E A Sbjct: 93 VFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALETM 152 Query: 269 NGVELQGKRLAV 304 N +L G+ L + Sbjct: 153 NKYDLSGRPLNI 164 Score = 34.7 bits (78), Expect = 0.13 Identities = 21/64 (32%), Positives = 31/64 (48%) Frame = +2 Query: 83 GAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKR 262 G+ +FV L L+E+FS G + I +D++G S+G G V F + A A Sbjct: 223 GSTIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAIS 282 Query: 263 QKNG 274 NG Sbjct: 283 MFNG 286
>RBM34_HUMAN (P42696) RNA-binding protein 34 (RNA-binding motif protein 34)| Length = 430 Score = 56.2 bits (134), Expect = 4e-08 Identities = 29/79 (36%), Positives = 48/79 (60%), Gaps = 1/79 (1%) Frame = +2 Query: 92 VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQ-NGVSKGFGFVRFAERECAYIAKRQK 268 VFVG LP E + + F CG I+ +RI++D+ G+ KGFG+V F + ++A + Sbjct: 289 VFVGNLPYKVEESAIEKHFLDCGSIMAVRIVRDKMTGIGKGFGYVLFENTDSVHLALKLN 348 Query: 269 NGVELQGKRLAVDLSLDQD 325 N EL G++L V S++++ Sbjct: 349 NS-ELMGRKLRVMRSVNKE 366 Score = 35.4 bits (80), Expect = 0.074 Identities = 39/144 (27%), Positives = 57/144 (39%), Gaps = 26/144 (18%) Frame = +2 Query: 62 EQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLR--------------------- 178 E++R VFVG LP + + L+ F G+I +R Sbjct: 177 EEERLKNERTVFVGNLPVTCNKKKLKSFFKEYGQIESVRFRSLIPAEGTLSKKLAAIKRK 236 Query: 179 IMKDQNGVSKGFGFVRFAERECAYIAKRQKNGVELQGKRLAVDL-----SLDQDTLFFGN 343 I DQ ++ +V F E A A ++ G R+ VDL S D+ ++F GN Sbjct: 237 IHPDQKNIN---AYVVFKEESAATQALKRNGAQIADGFRIRVDLASETSSRDKRSVFVGN 293 Query: 344 LCKEWSAEEFEELIHKTFKDVISV 415 L + E E I K F D S+ Sbjct: 294 L--PYKVE--ESAIEKHFLDCGSI 313
>PABP4_HUMAN (Q13310) Polyadenylate-binding protein 4 (Poly(A)-binding protein| 4) (PABP 4) (Inducible poly(A)-binding protein) (iPABP) (Activated-platelet protein 1) (APP-1) Length = 644 Score = 56.2 bits (134), Expect = 4e-08 Identities = 40/132 (30%), Positives = 65/132 (49%), Gaps = 5/132 (3%) Frame = +2 Query: 92 VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKRQKN 271 V++ + +L+E+FS G+ + +++M+D NG SKGFGFV + + E A A + N Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMN 252 Query: 272 GVELQGKRLAVDLSLDQDTLFFGNLCK--EWSAE---EFEELIHKTFKDVISVDLAMAPN 436 G E+ GK +F G K E AE +FE+L + V+L + N Sbjct: 253 GKEISGK-----------IIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYI-KN 300 Query: 437 LDSSTSKRRLNR 472 LD + +L + Sbjct: 301 LDDTIDDEKLRK 312 Score = 45.4 bits (106), Expect = 7e-05 Identities = 27/82 (32%), Positives = 43/82 (52%) Frame = +2 Query: 59 DEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAER 238 D R+ VF+ L +S L + FS G I+ +++ D+NG SKG+ FV F + Sbjct: 90 DPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQ 148 Query: 239 ECAYIAKRQKNGVELQGKRLAV 304 E A A + NG+ L +++ V Sbjct: 149 EAADKAIEKMNGMLLNDRKVFV 170 Score = 44.3 bits (103), Expect = 2e-04 Identities = 33/103 (32%), Positives = 56/103 (54%), Gaps = 4/103 (3%) Frame = +2 Query: 17 EPKMDRRAASHGDYDE--QDR--RVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIM 184 + K++R+A +++ Q+R R +G +++ L + + LR+ FS G I ++M Sbjct: 267 QKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM 326 Query: 185 KDQNGVSKGFGFVRFAERECAYIAKRQKNGVELQGKRLAVDLS 313 + +G SKGFGFV F+ E A A + NG + K L V L+ Sbjct: 327 LE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 368
>RBM34_MOUSE (Q8C5L7) RNA-binding protein 34 (RNA-binding motif protein 34)| Length = 375 Score = 56.2 bits (134), Expect = 4e-08 Identities = 31/81 (38%), Positives = 48/81 (59%), Gaps = 1/81 (1%) Frame = +2 Query: 92 VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQ-NGVSKGFGFVRFAERECAYIAKRQK 268 VFVG LP + L E F CG IV +RI+++ GV +GFG+V F + ++A + Sbjct: 293 VFVGNLPYKIEDSALEEHFLDCGSIVAVRIVRNPLTGVGRGFGYVLFENTDAVHLALKLN 352 Query: 269 NGVELQGKRLAVDLSLDQDTL 331 N EL G++L V S++++ L Sbjct: 353 NS-ELMGRKLRVMRSVNKEKL 372
>NONO_MOUSE (Q99K48) Non-POU domain-containing octamer-binding protein (NonO| protein) Length = 473 Score = 55.8 bits (133), Expect = 5e-08 Identities = 36/98 (36%), Positives = 53/98 (54%) Frame = +2 Query: 86 AEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKRQ 265 + +FVG LP TE +R++F G+ ++ I KD KGFGF+R R A IAK + Sbjct: 76 SRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD-----KGFGFIRLETRTLAEIAKVE 130 Query: 266 KNGVELQGKRLAVDLSLDQDTLFFGNLCKEWSAEEFEE 379 + + L+GK+L V + +L NL + S E EE Sbjct: 131 LDNMPLRGKQLRVRFACHSASLTVRNLPQYVSNELLEE 168
>NONO_RAT (Q5FVM4) Non-POU domain-containing octamer-binding protein (NonO| protein) Length = 476 Score = 55.8 bits (133), Expect = 5e-08 Identities = 36/98 (36%), Positives = 53/98 (54%) Frame = +2 Query: 86 AEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKRQ 265 + +FVG LP TE +R++F G+ ++ I KD KGFGF+R R A IAK + Sbjct: 79 SRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD-----KGFGFIRLETRTLAEIAKVE 133 Query: 266 KNGVELQGKRLAVDLSLDQDTLFFGNLCKEWSAEEFEE 379 + + L+GK+L V + +L NL + S E EE Sbjct: 134 LDNMPLRGKQLRVRFACHSASLTVRNLPQYVSNELLEE 171
>NONO_PONPY (Q5RFL9) Non-POU domain-containing octamer-binding protein (NonO| protein) Length = 471 Score = 55.8 bits (133), Expect = 5e-08 Identities = 36/98 (36%), Positives = 53/98 (54%) Frame = +2 Query: 86 AEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKRQ 265 + +FVG LP TE +R++F G+ ++ I KD KGFGF+R R A IAK + Sbjct: 74 SRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD-----KGFGFIRLETRTLAEIAKVE 128 Query: 266 KNGVELQGKRLAVDLSLDQDTLFFGNLCKEWSAEEFEE 379 + + L+GK+L V + +L NL + S E EE Sbjct: 129 LDNMPLRGKQLRVRFACHSASLTVRNLPQYVSNELLEE 166
>NONO_HUMAN (Q15233) Non-POU domain-containing octamer-binding protein (NonO| protein) (54 kDa nuclear RNA- and DNA-binding protein) (p54(nrb)) (p54nrb) (55 kDa nuclear protein) (NMT55) (DNA-binding p52/p100 complex, 52 kDa subunit) Length = 471 Score = 55.8 bits (133), Expect = 5e-08 Identities = 36/98 (36%), Positives = 53/98 (54%) Frame = +2 Query: 86 AEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKRQ 265 + +FVG LP TE +R++F G+ ++ I KD KGFGF+R R A IAK + Sbjct: 74 SRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD-----KGFGFIRLETRTLAEIAKVE 128 Query: 266 KNGVELQGKRLAVDLSLDQDTLFFGNLCKEWSAEEFEE 379 + + L+GK+L V + +L NL + S E EE Sbjct: 129 LDNMPLRGKQLRVRFACHSASLTVRNLPQYVSNELLEE 166
>HNRPD_MOUSE (Q60668) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)| (AU-rich element RNA-binding protein 1) Length = 355 Score = 55.8 bits (133), Expect = 5e-08 Identities = 50/165 (30%), Positives = 73/165 (44%), Gaps = 13/165 (7%) Frame = +2 Query: 8 EGEEPKMDRRAASHGDYDEQDRRVKGA-------EVFVGGLPRSATEGTLREIFSTCGEI 166 EG + + G + R + A ++F+GGL T+ L++ FS GE+ Sbjct: 64 EGAKIDASKNEEDEGHSNSSPRHTEAAAAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEV 123 Query: 167 VDLRIMKDQ-NGVSKGFGFVRFAERECAYIAKRQK----NGVELQGKRL-AVDLSLDQDT 328 VD + D G S+GFGFV F E E QK NG + KR A+ Sbjct: 124 VDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKK 183 Query: 329 LFFGNLCKEWSAEEFEELIHKTFKDVISVDLAMAPNLDSSTSKRR 463 +F G L + E+ E F +V S++L M D+ T+KRR Sbjct: 184 IFVGGLSPDTPEEKIREYF-GGFGEVESIELPM----DNKTNKRR 223
>MYEF2_HUMAN (Q9P2K5) Myelin expression factor 2 (MyEF-2) (MST156)| Length = 600 Score = 55.8 bits (133), Expect = 5e-08 Identities = 34/82 (41%), Positives = 48/82 (58%) Frame = +2 Query: 80 KGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAK 259 KG ++FV LP T L+E FS CG ++ I K +NG SKG G VRF E A A Sbjct: 521 KGNQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEI-KMENGKSKGCGTVRFDSPESAEKAC 579 Query: 260 RQKNGVELQGKRLAVDLSLDQD 325 R NG+++ G+ +D+ LD++ Sbjct: 580 RIMNGIKISGRE--IDVRLDRN 599 Score = 35.0 bits (79), Expect = 0.097 Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 1/72 (1%) Frame = +2 Query: 92 VFVGGLPRSATEGTLREIF-STCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKRQK 268 VF+ +P ++++ GE+ + + KD G S+G G V F + E A Sbjct: 102 VFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALETM 161 Query: 269 NGVELQGKRLAV 304 N +L G+ L + Sbjct: 162 NKYDLSGRPLNI 173 Score = 34.7 bits (78), Expect = 0.13 Identities = 21/64 (32%), Positives = 31/64 (48%) Frame = +2 Query: 83 GAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKR 262 G+ +FV L L+E+FS G + I +D++G S+G G V F + A A Sbjct: 232 GSTIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAIS 291 Query: 263 QKNG 274 NG Sbjct: 292 MFNG 295
>PABPX_ARATH (Q9ZQA8) Probable polyadenylate-binding protein At2g36660| (Poly(A)-binding protein At2g36660) (PABP) Length = 609 Score = 55.8 bits (133), Expect = 5e-08 Identities = 32/86 (37%), Positives = 48/86 (55%) Frame = +2 Query: 56 YDEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAE 235 ++EQ K + ++V + + TE LR+ FS CG I ++M D+ G SKGFGFV F+ Sbjct: 294 HEEQKMIAKVSNIYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEKGKSKGFGFVCFST 353 Query: 236 RECAYIAKRQKNGVELQGKRLAVDLS 313 E A A + +G GK L V ++ Sbjct: 354 PEEAIDAVKTFHGQMFHGKPLYVAIA 379 Score = 52.0 bits (123), Expect = 8e-07 Identities = 34/131 (25%), Positives = 63/131 (48%), Gaps = 9/131 (6%) Frame = +2 Query: 71 RRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAY 250 RR VFV LP S T L+++F G IV ++ ++G S+G+GFV+F + + A+ Sbjct: 107 RRNGVGNVFVKNLPESVTNAVLQDMFKKFGNIVSCKVATLEDGKSRGYGFVQFEQEDAAH 166 Query: 251 IAKRQKNGVELQGKRLAVDLSLDQ------DTLFFGNLCKEWSAEEFEELIHKTFKD--- 403 A + N + K + V + + + + K A+ E+L+ + F + Sbjct: 167 AAIQTLNSTIVADKEIYVGKFMKKTDRVKPEEKYTNLYMKNLDADVSEDLLREKFAEFGK 226 Query: 404 VISVDLAMAPN 436 ++S+ +A N Sbjct: 227 IVSLAIAKDEN 237 Score = 47.4 bits (111), Expect = 2e-05 Identities = 37/122 (30%), Positives = 57/122 (46%), Gaps = 4/122 (3%) Frame = +2 Query: 50 GDYDEQDRRVKGAE----VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFG 217 G + ++ RVK E +++ L +E LRE F+ G+IV L I KD+N + +G+ Sbjct: 185 GKFMKKTDRVKPEEKYTNLYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENRLCRGYA 244 Query: 218 FVRFAERECAYIAKRQKNGVELQGKRLAVDLSLDQDTLFFGNLCKEWSAEEFEELIHKTF 397 FV F E A A NG + K L+ G K+ E E+L+ + F Sbjct: 245 FVNFDNPEDARRAAETVNGTKFGSK-----------CLYVGRAQKK---AEREQLLREQF 290 Query: 398 KD 403 K+ Sbjct: 291 KE 292 Score = 44.7 bits (104), Expect = 1e-04 Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 1/74 (1%) Frame = +2 Query: 86 AEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKD-QNGVSKGFGFVRFAERECAYIAKR 262 A ++VG L S TEG L + F+ + +R+ KD +G S +G+ F R+ A +A Sbjct: 24 ASLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAIE 83 Query: 263 QKNGVELQGKRLAV 304 +KN L GK + V Sbjct: 84 KKNNSLLNGKMIRV 97
>HNRPD_HUMAN (Q14103) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)| (AU-rich element RNA-binding protein 1) Length = 355 Score = 55.5 bits (132), Expect = 7e-08 Identities = 45/131 (34%), Positives = 64/131 (48%), Gaps = 6/131 (4%) Frame = +2 Query: 89 EVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQ-NGVSKGFGFVRFAERECAYIAKRQ 265 ++F+GGL T+ L++ FS GE+VD + D G S+GFGFV F E E Q Sbjct: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157 Query: 266 K----NGVELQGKRL-AVDLSLDQDTLFFGNLCKEWSAEEFEELIHKTFKDVISVDLAMA 430 K NG + KR A+ +F G L + E+ E F +V S++L M Sbjct: 158 KEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYF-GGFGEVESIELPM- 215 Query: 431 PNLDSSTSKRR 463 D+ T+KRR Sbjct: 216 ---DNKTNKRR 223
>DAZP1_XENLA (Q98SJ2) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) (Proline-rich Vg1 mRNA-binding protein) Length = 360 Score = 54.7 bits (130), Expect = 1e-07 Identities = 28/53 (52%), Positives = 36/53 (67%), Gaps = 1/53 (1%) Frame = +2 Query: 89 EVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQ-NGVSKGFGFVRFAEREC 244 ++FVGGL S T+ TLR FS GE+VD IMKD+ S+GFGFV+F + C Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNC 63 Score = 40.0 bits (92), Expect = 0.003 Identities = 24/107 (22%), Positives = 53/107 (49%), Gaps = 1/107 (0%) Frame = +2 Query: 11 GEEPKMDRRAASHGDYDEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKD 190 G +P+ R + + + ++FVGG+P + E L+E F+ G + ++ ++ D Sbjct: 89 GMQPERSRPREGWQQKEPRTENSRSNKIFVGGIPHNCGETELKEYFNRFGVVTEVVMIYD 148 Query: 191 -QNGVSKGFGFVRFAERECAYIAKRQKNGVELQGKRLAVDLSLDQDT 328 + +GFGF+ F + + A + ++ GK++ V + +D+ Sbjct: 149 AEKQRPRGFGFITFEDEQSVDQAVNM-HFHDIMGKKVEVKRAEPRDS 194
>DAZP1_MOUSE (Q9JII5) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) Length = 406 Score = 54.7 bits (130), Expect = 1e-07 Identities = 28/53 (52%), Positives = 36/53 (67%), Gaps = 1/53 (1%) Frame = +2 Query: 89 EVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQ-NGVSKGFGFVRFAEREC 244 ++FVGGL S T+ TLR FS GE+VD IMKD+ S+GFGFV+F + C Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNC 63 Score = 39.3 bits (90), Expect = 0.005 Identities = 23/84 (27%), Positives = 45/84 (53%), Gaps = 1/84 (1%) Frame = +2 Query: 80 KGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKD-QNGVSKGFGFVRFAERECAYIA 256 K ++FVGG+P + E LRE F G + ++ ++ D + +GFGF+ F + + A Sbjct: 111 KSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQA 170 Query: 257 KRQKNGVELQGKRLAVDLSLDQDT 328 + ++ GK++ V + +D+ Sbjct: 171 VNM-HFHDIMGKKVEVKRAEPRDS 193
>DAZP1_HUMAN (Q96EP5) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) Length = 407 Score = 54.7 bits (130), Expect = 1e-07 Identities = 28/53 (52%), Positives = 36/53 (67%), Gaps = 1/53 (1%) Frame = +2 Query: 89 EVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQ-NGVSKGFGFVRFAEREC 244 ++FVGGL S T+ TLR FS GE+VD IMKD+ S+GFGFV+F + C Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNC 63 Score = 39.3 bits (90), Expect = 0.005 Identities = 23/84 (27%), Positives = 45/84 (53%), Gaps = 1/84 (1%) Frame = +2 Query: 80 KGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKD-QNGVSKGFGFVRFAERECAYIA 256 K ++FVGG+P + E LRE F G + ++ ++ D + +GFGF+ F + + A Sbjct: 111 KSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQA 170 Query: 257 KRQKNGVELQGKRLAVDLSLDQDT 328 + ++ GK++ V + +D+ Sbjct: 171 VNM-HFHDIMGKKVEVKRAEPRDS 193
>HNRPD_RAT (Q9JJ54) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)| (AU-rich element RNA-binding protein 1) Length = 353 Score = 54.7 bits (130), Expect = 1e-07 Identities = 49/165 (29%), Positives = 73/165 (44%), Gaps = 13/165 (7%) Frame = +2 Query: 8 EGEEPKMDRRAASHGDYDEQDRRVKGA-------EVFVGGLPRSATEGTLREIFSTCGEI 166 EG + + G + R + A ++F+GGL T+ L++ FS G++ Sbjct: 62 EGAKIDASKNEEDEGHSNSSPRHTEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGDV 121 Query: 167 VDLRIMKDQ-NGVSKGFGFVRFAERECAYIAKRQK----NGVELQGKRL-AVDLSLDQDT 328 VD + D G S+GFGFV F E E QK NG + KR A+ Sbjct: 122 VDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKK 181 Query: 329 LFFGNLCKEWSAEEFEELIHKTFKDVISVDLAMAPNLDSSTSKRR 463 +F G L + E+ E F +V S++L M D+ T+KRR Sbjct: 182 IFVGGLSPDTPEEKIREYF-GGFGEVESIELPM----DNKTNKRR 221
>PABP2_ARATH (P42731) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PABP 2) Length = 629 Score = 54.3 bits (129), Expect = 2e-07 Identities = 32/99 (32%), Positives = 52/99 (52%) Frame = +2 Query: 17 EPKMDRRAASHGDYDEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQN 196 E + + R + E + + + ++V L S ++ L+EIFS G + ++M+D N Sbjct: 295 ERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPN 354 Query: 197 GVSKGFGFVRFAERECAYIAKRQKNGVELQGKRLAVDLS 313 G SKG GFV FA E A A Q +G ++ K L V ++ Sbjct: 355 GTSKGSGFVAFATPEEATEAMSQLSGKMIESKPLYVAIA 393 Score = 54.3 bits (129), Expect = 2e-07 Identities = 29/82 (35%), Positives = 43/82 (52%) Frame = +2 Query: 59 DEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAER 238 D RR +F+ L S L + FS+ G IV ++ D +G SKG+GFV++A Sbjct: 115 DPSVRRSGAGNIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDSSGQSKGYGFVQYANE 174 Query: 239 ECAYIAKRQKNGVELQGKRLAV 304 E A A + NG+ L K++ V Sbjct: 175 ESAQKAIEKLNGMLLNDKQVYV 196 Score = 49.7 bits (117), Expect = 4e-06 Identities = 28/78 (35%), Positives = 36/78 (46%) Frame = +2 Query: 59 DEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAER 238 D + K V+V L S T+ L+ F G+I +MKD G SKGFGFV F Sbjct: 206 DSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENA 265 Query: 239 ECAYIAKRQKNGVELQGK 292 + A A NG + K Sbjct: 266 DDAARAVESLNGHKFDDK 283
>ROC1_NICSY (Q08935) 29 kDa ribonucleoprotein A, chloroplast precursor (CP29A)| Length = 273 Score = 53.9 bits (128), Expect = 2e-07 Identities = 29/74 (39%), Positives = 43/74 (58%), Gaps = 1/74 (1%) Frame = +2 Query: 89 EVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQ-NGVSKGFGFVRFAERECAYIAKRQ 265 ++FVG LP SA L E+F G + + ++ D+ G S+GFGFV + +E A +Q Sbjct: 88 KIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQ 147 Query: 266 KNGVELQGKRLAVD 307 NG EL G+ L V+ Sbjct: 148 FNGYELDGRALRVN 161 Score = 48.5 bits (114), Expect = 8e-06 Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 1/86 (1%) Frame = +2 Query: 50 GDYDEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQN-GVSKGFGFVR 226 G +D +R V+VG L + L +FS G++VD +++ D++ G S+GFGFV Sbjct: 182 GSFDSSNR------VYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVT 235 Query: 227 FAERECAYIAKRQKNGVELQGKRLAV 304 ++ E A +GV+L G+ + V Sbjct: 236 YSSAEEVNNAIESLDGVDLNGRAIRV 261
>ELAV4_HUMAN (P26378) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 380 Score = 53.9 bits (128), Expect = 2e-07 Identities = 29/72 (40%), Positives = 45/72 (62%), Gaps = 1/72 (1%) Frame = +2 Query: 77 VKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQ-NGVSKGFGFVRFAERECAYI 253 ++ A ++V GLP++ T+ L ++FS G I+ RI+ DQ GVS+G GF+RF +R A Sbjct: 129 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEE 188 Query: 254 AKRQKNGVELQG 289 A + NG + G Sbjct: 189 AIKGLNGQKPSG 200 Score = 48.1 bits (113), Expect = 1e-05 Identities = 31/104 (29%), Positives = 53/104 (50%), Gaps = 7/104 (6%) Frame = +2 Query: 92 VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQ-NGVSKGFGFVRFAERECAYIAKRQK 268 + V LP++ T+ R +F + GEI ++++D+ G S G+GFV + + + A A Sbjct: 48 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 107 Query: 269 NGVELQGKRLAV------DLSLDQDTLFFGNLCKEWSAEEFEEL 382 NG+ LQ K + V S+ L+ L K + +E E+L Sbjct: 108 NGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQL 151 Score = 35.8 bits (81), Expect = 0.057 Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 1/78 (1%) Frame = +2 Query: 92 VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQN-GVSKGFGFVRFAERECAYIAKRQK 268 +FV L + E L ++F G + ++++++D N KGFGFV + A +A Sbjct: 299 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 358 Query: 269 NGVELQGKRLAVDLSLDQ 322 NG L + L V ++ Sbjct: 359 NGYRLGDRVLQVSFKTNK 376
>ELAV4_RAT (O09032) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 373 Score = 53.9 bits (128), Expect = 2e-07 Identities = 29/72 (40%), Positives = 45/72 (62%), Gaps = 1/72 (1%) Frame = +2 Query: 77 VKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQ-NGVSKGFGFVRFAERECAYI 253 ++ A ++V GLP++ T+ L ++FS G I+ RI+ DQ GVS+G GF+RF +R A Sbjct: 122 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEE 181 Query: 254 AKRQKNGVELQG 289 A + NG + G Sbjct: 182 AIKGLNGQKPSG 193 Score = 48.1 bits (113), Expect = 1e-05 Identities = 31/104 (29%), Positives = 53/104 (50%), Gaps = 7/104 (6%) Frame = +2 Query: 92 VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQ-NGVSKGFGFVRFAERECAYIAKRQK 268 + V LP++ T+ R +F + GEI ++++D+ G S G+GFV + + + A A Sbjct: 41 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 100 Query: 269 NGVELQGKRLAV------DLSLDQDTLFFGNLCKEWSAEEFEEL 382 NG+ LQ K + V S+ L+ L K + +E E+L Sbjct: 101 NGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQL 144 Score = 35.8 bits (81), Expect = 0.057 Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 1/78 (1%) Frame = +2 Query: 92 VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQN-GVSKGFGFVRFAERECAYIAKRQK 268 +FV L + E L ++F G + ++++++D N KGFGFV + A +A Sbjct: 292 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 351 Query: 269 NGVELQGKRLAVDLSLDQ 322 NG L + L V ++ Sbjct: 352 NGYRLGDRVLQVSFKTNK 369
>RBM3_HUMAN (P98179) Putative RNA-binding protein 3 (RNA-binding motif protein| 3) (RNPL) Length = 157 Score = 53.9 bits (128), Expect = 2e-07 Identities = 29/74 (39%), Positives = 45/74 (60%), Gaps = 1/74 (1%) Frame = +2 Query: 89 EVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGV-SKGFGFVRFAERECAYIAKRQ 265 ++FVGGL + E L + FS+ G I ++ ++KD+ S+GFGF+ F E A +A R Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRA 66 Query: 266 KNGVELQGKRLAVD 307 NG L G+++ VD Sbjct: 67 MNGESLDGRQIRVD 80
>PABP3_ARATH (O64380) Polyadenylate-binding protein 3 (Poly(A)-binding protein| 3) (PABP 3) Length = 660 Score = 53.9 bits (128), Expect = 2e-07 Identities = 44/141 (31%), Positives = 61/141 (43%), Gaps = 5/141 (3%) Frame = +2 Query: 59 DEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAER 238 DE + V+V LP+ E LR+ F G I +M+DQ+G S+ FGFV F Sbjct: 220 DENTPTPRFTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECT 279 Query: 239 ECAYIAKRQKNGVELQGKRLAVDLSLDQDTLFFGNLCKEWSAEE-----FEELIHKTFKD 403 E A A + NG+ SL D L+ G K+ EE FE+ F+ Sbjct: 280 EAAASAVEKMNGI-----------SLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEK 328 Query: 404 VISVDLAMAPNLDSSTSKRRL 466 +L + NLD S +L Sbjct: 329 SQGANLYL-KNLDDSVDDEKL 348 Score = 48.5 bits (114), Expect = 8e-06 Identities = 28/89 (31%), Positives = 49/89 (55%), Gaps = 5/89 (5%) Frame = +2 Query: 62 EQDR-----RVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVR 226 EQ+R + +GA +++ L S + L+E+FS G + ++M + G+S+GFGFV Sbjct: 319 EQERINRFEKSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVA 378 Query: 227 FAERECAYIAKRQKNGVELQGKRLAVDLS 313 ++ E A A + NG + K L + L+ Sbjct: 379 YSNPEEALRALSEMNGKMIGRKPLYIALA 407 Score = 47.8 bits (112), Expect = 1e-05 Identities = 35/125 (28%), Positives = 57/125 (45%), Gaps = 14/125 (11%) Frame = +2 Query: 59 DEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAER 238 D R +F+ L S L E FS+ G I+ ++ D G SKG+GFV+F + Sbjct: 127 DPSTRLSGKGNIFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKE 186 Query: 239 ECAYIAKRQKNGVELQGKRLAV-------DLSLDQDT-------LFFGNLCKEWSAEEFE 376 E A A + NG+ + K++ V + + D++T ++ NL KE +E Sbjct: 187 ESAQAAIDKLNGMLMNDKQVFVGHFIRRQERARDENTPTPRFTNVYVKNLPKEIGEDELR 246 Query: 377 ELIHK 391 + K Sbjct: 247 KTFGK 251
>GRP2_SORBI (Q99070) Glycine-rich RNA-binding protein 2| Length = 168 Score = 53.9 bits (128), Expect = 2e-07 Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 1/72 (1%) Frame = +2 Query: 95 FVGGLPRSATEGTLREIFSTCGEIVDLRIMKD-QNGVSKGFGFVRFAERECAYIAKRQKN 271 FVGGL + TL + F+ G+++D +++ D + G S+GFGFV F+ + A N Sbjct: 11 FVGGLAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQSMLDAIENMN 70 Query: 272 GVELQGKRLAVD 307 G EL G+ + V+ Sbjct: 71 GKELDGRNITVN 82
>ELAV4_MOUSE (Q61701) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 385 Score = 53.9 bits (128), Expect = 2e-07 Identities = 29/72 (40%), Positives = 45/72 (62%), Gaps = 1/72 (1%) Frame = +2 Query: 77 VKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQ-NGVSKGFGFVRFAERECAYI 253 ++ A ++V GLP++ T+ L ++FS G I+ RI+ DQ GVS+G GF+RF +R A Sbjct: 134 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEE 193 Query: 254 AKRQKNGVELQG 289 A + NG + G Sbjct: 194 AIKGLNGQKPSG 205 Score = 48.1 bits (113), Expect = 1e-05 Identities = 31/104 (29%), Positives = 53/104 (50%), Gaps = 7/104 (6%) Frame = +2 Query: 92 VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQ-NGVSKGFGFVRFAERECAYIAKRQK 268 + V LP++ T+ R +F + GEI ++++D+ G S G+GFV + + + A A Sbjct: 53 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 112 Query: 269 NGVELQGKRLAV------DLSLDQDTLFFGNLCKEWSAEEFEEL 382 NG+ LQ K + V S+ L+ L K + +E E+L Sbjct: 113 NGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQL 156 Score = 35.8 bits (81), Expect = 0.057 Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 1/78 (1%) Frame = +2 Query: 92 VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQN-GVSKGFGFVRFAERECAYIAKRQK 268 +FV L + E L ++F G + ++++++D N KGFGFV + A +A Sbjct: 304 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 363 Query: 269 NGVELQGKRLAVDLSLDQ 322 NG L + L V ++ Sbjct: 364 NGYRLGDRVLQVSFKTNK 381
>RT19_ARATH (P39697) 40S ribosomal protein S19, mitochondrial precursor| Length = 212 Score = 53.5 bits (127), Expect = 3e-07 Identities = 40/137 (29%), Positives = 70/137 (51%), Gaps = 4/137 (2%) Frame = +2 Query: 74 RVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQ-NGVSKGFGFVRFAERECAY 250 R ++++GGL E +L++ FS+ + + R+M ++ G S+G+GFV F + A Sbjct: 27 RYMSTKLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSAN 86 Query: 251 IAKRQKNGVELQGKRLAVDLSLDQDTLFFGNLCKEWSAEEFEELIHKTFKDVISVDLAMA 430 A NG EL G ++V+++ D +L L + S EE E+ +K + D Sbjct: 87 SAISAMNGQELNGFNISVNVAKDWPSL---PLSLDESIEEAEKKENKMMSRSVWKD---- 139 Query: 431 PNLDSSTSKRR---LNR 472 P +D+ K++ LNR Sbjct: 140 PFVDAFLMKKKNAALNR 156
>ELAV2_MOUSE (Q60899) ELAV-like protein 2 (Hu-antigen B) (HuB) (ELAV-like| neuronal protein 1) (Nervous system-specific RNA-binding protein Mel-N1) Length = 360 Score = 53.1 bits (126), Expect = 3e-07 Identities = 28/72 (38%), Positives = 45/72 (62%), Gaps = 1/72 (1%) Frame = +2 Query: 77 VKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQ-NGVSKGFGFVRFAERECAYI 253 ++ A ++V GLP++ T+ L ++FS G I+ RI+ DQ G+S+G GF+RF +R A Sbjct: 122 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEE 181 Query: 254 AKRQKNGVELQG 289 A + NG + G Sbjct: 182 AIKGLNGQKPPG 193 Score = 48.5 bits (114), Expect = 8e-06 Identities = 31/104 (29%), Positives = 54/104 (51%), Gaps = 7/104 (6%) Frame = +2 Query: 92 VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQ-NGVSKGFGFVRFAERECAYIAKRQK 268 + V LP++ T+ L+ +F + GEI ++++D+ G S G+GFV + + + A A Sbjct: 41 LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 100 Query: 269 NGVELQGKRLAV------DLSLDQDTLFFGNLCKEWSAEEFEEL 382 NG+ LQ K + V S+ L+ L K + +E E+L Sbjct: 101 NGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQL 144 Score = 37.4 bits (85), Expect = 0.019 Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 1/78 (1%) Frame = +2 Query: 92 VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQN-GVSKGFGFVRFAERECAYIAKRQK 268 +FV L A E L ++F G + ++++++D N KGFGFV + A +A Sbjct: 279 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 338 Query: 269 NGVELQGKRLAVDLSLDQ 322 NG L + L V ++ Sbjct: 339 NGYRLGDRVLQVSFKTNK 356
>PABP1_RAT (Q9EPH8) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 53.1 bits (126), Expect = 3e-07 Identities = 26/71 (36%), Positives = 40/71 (56%) Frame = +2 Query: 92 VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKRQKN 271 V++ + L+E+F G + +++M D++G SKGFGFV F E A A + N Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252 Query: 272 GVELQGKRLAV 304 G EL GK++ V Sbjct: 253 GKELNGKQIYV 263 Score = 47.8 bits (112), Expect = 1e-05 Identities = 27/82 (32%), Positives = 44/82 (53%) Frame = +2 Query: 59 DEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAER 238 D R+ +F+ L +S L + FS G I+ +++ D+NG SKG+GFV F + Sbjct: 90 DPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQ 148 Query: 239 ECAYIAKRQKNGVELQGKRLAV 304 E A A + NG+ L +++ V Sbjct: 149 EAAERAIEKMNGMLLNDRKVFV 170 Score = 43.5 bits (101), Expect = 3e-04 Identities = 34/103 (33%), Positives = 53/103 (51%), Gaps = 4/103 (3%) Frame = +2 Query: 17 EPKMDRRAASHGDYDE--QDR--RVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIM 184 + K++R+ +++ QDR R +G ++V L + LR+ FS G I ++M Sbjct: 267 QKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVM 326 Query: 185 KDQNGVSKGFGFVRFAERECAYIAKRQKNGVELQGKRLAVDLS 313 + G SKGFGFV F+ E A A + NG + K L V L+ Sbjct: 327 ME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
>PABP1_MOUSE (P29341) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 53.1 bits (126), Expect = 3e-07 Identities = 26/71 (36%), Positives = 40/71 (56%) Frame = +2 Query: 92 VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKRQKN 271 V++ + L+E+F G + +++M D++G SKGFGFV F E A A + N Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252 Query: 272 GVELQGKRLAV 304 G EL GK++ V Sbjct: 253 GKELNGKQIYV 263 Score = 47.8 bits (112), Expect = 1e-05 Identities = 27/82 (32%), Positives = 44/82 (53%) Frame = +2 Query: 59 DEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAER 238 D R+ +F+ L +S L + FS G I+ +++ D+NG SKG+GFV F + Sbjct: 90 DPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQ 148 Query: 239 ECAYIAKRQKNGVELQGKRLAV 304 E A A + NG+ L +++ V Sbjct: 149 EAAERAIEKMNGMLLNDRKVFV 170 Score = 43.5 bits (101), Expect = 3e-04 Identities = 34/103 (33%), Positives = 53/103 (51%), Gaps = 4/103 (3%) Frame = +2 Query: 17 EPKMDRRAASHGDYDE--QDR--RVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIM 184 + K++R+ +++ QDR R +G ++V L + LR+ FS G I ++M Sbjct: 267 QKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVM 326 Query: 185 KDQNGVSKGFGFVRFAERECAYIAKRQKNGVELQGKRLAVDLS 313 + G SKGFGFV F+ E A A + NG + K L V L+ Sbjct: 327 ME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
>ELAV2_RAT (Q8CH84) ELAV-like protein 2 (Hu-antigen B) (HuB)| Length = 359 Score = 53.1 bits (126), Expect = 3e-07 Identities = 28/72 (38%), Positives = 45/72 (62%), Gaps = 1/72 (1%) Frame = +2 Query: 77 VKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQ-NGVSKGFGFVRFAERECAYI 253 ++ A ++V GLP++ T+ L ++FS G I+ RI+ DQ G+S+G GF+RF +R A Sbjct: 122 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEE 181 Query: 254 AKRQKNGVELQG 289 A + NG + G Sbjct: 182 AIKGLNGQKPPG 193 Score = 47.8 bits (112), Expect = 1e-05 Identities = 30/99 (30%), Positives = 52/99 (52%), Gaps = 7/99 (7%) Frame = +2 Query: 107 LPRSATEGTLREIFSTCGEIVDLRIMKDQ-NGVSKGFGFVRFAERECAYIAKRQKNGVEL 283 LP++ T+ L+ +F + GEI ++++D+ G S G+GFV + + + A A NG+ L Sbjct: 46 LPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRL 105 Query: 284 QGKRLAV------DLSLDQDTLFFGNLCKEWSAEEFEEL 382 Q K + V S+ L+ L K + +E E+L Sbjct: 106 QTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQL 144 Score = 37.4 bits (85), Expect = 0.019 Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 1/78 (1%) Frame = +2 Query: 92 VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQN-GVSKGFGFVRFAERECAYIAKRQK 268 +FV L A E L ++F G + ++++++D N KGFGFV + A +A Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337 Query: 269 NGVELQGKRLAVDLSLDQ 322 NG L + L V ++ Sbjct: 338 NGYRLGDRVLQVSFKTNK 355
>ELAV2_PONPY (Q5R9Z6) ELAV-like protein 2| Length = 359 Score = 53.1 bits (126), Expect = 3e-07 Identities = 28/72 (38%), Positives = 45/72 (62%), Gaps = 1/72 (1%) Frame = +2 Query: 77 VKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQ-NGVSKGFGFVRFAERECAYI 253 ++ A ++V GLP++ T+ L ++FS G I+ RI+ DQ G+S+G GF+RF +R A Sbjct: 122 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEE 181 Query: 254 AKRQKNGVELQG 289 A + NG + G Sbjct: 182 AIKGLNGQKPPG 193 Score = 48.5 bits (114), Expect = 8e-06 Identities = 31/104 (29%), Positives = 54/104 (51%), Gaps = 7/104 (6%) Frame = +2 Query: 92 VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQ-NGVSKGFGFVRFAERECAYIAKRQK 268 + V LP++ T+ L+ +F + GEI ++++D+ G S G+GFV + + + A A Sbjct: 41 LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 100 Query: 269 NGVELQGKRLAV------DLSLDQDTLFFGNLCKEWSAEEFEEL 382 NG+ LQ K + V S+ L+ L K + +E E+L Sbjct: 101 NGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQL 144 Score = 37.4 bits (85), Expect = 0.019 Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 1/78 (1%) Frame = +2 Query: 92 VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQN-GVSKGFGFVRFAERECAYIAKRQK 268 +FV L A E L ++F G + ++++++D N KGFGFV + A +A Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337 Query: 269 NGVELQGKRLAVDLSLDQ 322 NG L + L V ++ Sbjct: 338 NGYRLGDRVLQVSFKTNK 355
>ELAV2_HUMAN (Q12926) ELAV-like protein 2 (Hu-antigen B) (HuB) (ELAV-like| neuronal protein 1) (Nervous system-specific RNA-binding protein Hel-N1) Length = 359 Score = 53.1 bits (126), Expect = 3e-07 Identities = 28/72 (38%), Positives = 45/72 (62%), Gaps = 1/72 (1%) Frame = +2 Query: 77 VKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQ-NGVSKGFGFVRFAERECAYI 253 ++ A ++V GLP++ T+ L ++FS G I+ RI+ DQ G+S+G GF+RF +R A Sbjct: 122 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEE 181 Query: 254 AKRQKNGVELQG 289 A + NG + G Sbjct: 182 AIKGLNGQKPPG 193 Score = 48.5 bits (114), Expect = 8e-06 Identities = 31/104 (29%), Positives = 54/104 (51%), Gaps = 7/104 (6%) Frame = +2 Query: 92 VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQ-NGVSKGFGFVRFAERECAYIAKRQK 268 + V LP++ T+ L+ +F + GEI ++++D+ G S G+GFV + + + A A Sbjct: 41 LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 100 Query: 269 NGVELQGKRLAV------DLSLDQDTLFFGNLCKEWSAEEFEEL 382 NG+ LQ K + V S+ L+ L K + +E E+L Sbjct: 101 NGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQL 144 Score = 37.4 bits (85), Expect = 0.019 Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 1/78 (1%) Frame = +2 Query: 92 VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQN-GVSKGFGFVRFAERECAYIAKRQK 268 +FV L A E L ++F G + ++++++D N KGFGFV + A +A Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337 Query: 269 NGVELQGKRLAVDLSLDQ 322 NG L + L V ++ Sbjct: 338 NGYRLGDRVLQVSFKTNK 355
>GRP8_ARATH (Q03251) Glycine-rich RNA-binding protein 8 (CCR1 protein)| Length = 169 Score = 53.1 bits (126), Expect = 3e-07 Identities = 27/72 (37%), Positives = 44/72 (61%), Gaps = 1/72 (1%) Frame = +2 Query: 95 FVGGLPRSATEGTLREIFSTCGEIVDLRIMKD-QNGVSKGFGFVRFAERECAYIAKRQKN 271 FVGGL + + L+ FS G+++D +I+ D ++G S+GFGFV F + + A + N Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68 Query: 272 GVELQGKRLAVD 307 G EL G+ + V+ Sbjct: 69 GKELDGRVITVN 80
>GRP10_BRANA (Q05966) Glycine-rich RNA-binding protein 10| Length = 169 Score = 53.1 bits (126), Expect = 3e-07 Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 1/72 (1%) Frame = +2 Query: 95 FVGGLPRSATEGTLREIFSTCGEIVDLRIMKD-QNGVSKGFGFVRFAERECAYIAKRQKN 271 FVGGL + + L FS GE++D +I+ D + G S+GFGFV F + + A + N Sbjct: 9 FVGGLAWATGDAELERTFSQFGEVIDSKIINDRETGRSRGFGFVTFKDEKSMKDAIDEMN 68 Query: 272 GVELQGKRLAVD 307 G EL G+ + V+ Sbjct: 69 GKELDGRTITVN 80
>HRP1_YEAST (Q99383) Nuclear polyadenylated RNA-binding protein 4 (Cleavage| factor IB) (CFIB) Length = 534 Score = 52.8 bits (125), Expect = 4e-07 Identities = 43/157 (27%), Positives = 72/157 (45%), Gaps = 7/157 (4%) Frame = +2 Query: 14 EEPKMDRRAASHGDYDEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKD- 190 + P + + + + D + ++F+GGL TE LRE F G + DL+IMKD Sbjct: 135 QSPPQQQVTQTKEERSKADLSKESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDP 194 Query: 191 QNGVSKGFGFVRFAERECAYIAKRQKNGVELQGKRLAVDLSLDQD------TLFFGNLCK 352 G S+GFGF+ F + + + + K L GK + ++ +D +F G + Sbjct: 195 ATGRSRGFGFLSF--EKPSSVDEVVKTQHILDGKVIDPKRAIPRDEQDKTGKIFVGGIGP 252 Query: 353 EWSAEEFEELIHKTFKDVISVDLAMAPNLDSSTSKRR 463 + +EFEE + + +I L LD T + R Sbjct: 253 DVRPKEFEEFFSQ-WGTIIDAQLM----LDKDTGQSR 284 Score = 43.5 bits (101), Expect = 3e-04 Identities = 24/58 (41%), Positives = 34/58 (58%), Gaps = 1/58 (1%) Frame = +2 Query: 59 DEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQN-GVSKGFGFVRF 229 DEQD K ++FVGG+ E FS G I+D ++M D++ G S+GFGFV + Sbjct: 237 DEQD---KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTY 291
>SF3B4_HUMAN (Q15427) Splicing factor 3B subunit 4 (Spliceosome-associated| protein 49) (SAP 49) (SF3b50) (Pre-mRNA-splicing factor SF3b 49 kDa subunit) Length = 424 Score = 52.8 bits (125), Expect = 4e-07 Identities = 38/116 (32%), Positives = 59/116 (50%), Gaps = 8/116 (6%) Frame = +2 Query: 74 RVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQ-NGVSKGFGFVRFAERECAY 250 R + A V+VGGL +E L E+F G +V+ + KD+ G +G+GFV F E A Sbjct: 9 RNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDAD 68 Query: 251 IAKRQKNGVELQGKRLAVDLSLDQD-------TLFFGNLCKEWSAEEFEELIHKTF 397 A + N ++L GK + V+ + + +F GNL E E+L++ TF Sbjct: 69 YAIKIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNL----DPEIDEKLLYDTF 120
>BOLL_MACFA (Q8WP23) Protein boule-like| Length = 283 Score = 52.8 bits (125), Expect = 4e-07 Identities = 25/71 (35%), Positives = 42/71 (59%) Frame = +2 Query: 92 VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKRQKN 271 +FVGG+ E LR+ FS G + +++I+ D+ GVSKG+GFV F +E A ++ Sbjct: 35 IFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDRAGVSKGYGFVTFETQEDAQKILQEAE 94 Query: 272 GVELQGKRLAV 304 + + K+L + Sbjct: 95 KLNYKDKKLNI 105
>BOLL_HUMAN (Q8N9W6) Protein boule-like| Length = 283 Score = 52.8 bits (125), Expect = 4e-07 Identities = 25/71 (35%), Positives = 42/71 (59%) Frame = +2 Query: 92 VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKRQKN 271 +FVGG+ E LR+ FS G + +++I+ D+ GVSKG+GFV F +E A ++ Sbjct: 35 IFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDRAGVSKGYGFVTFETQEDAQKILQEAE 94 Query: 272 GVELQGKRLAV 304 + + K+L + Sbjct: 95 KLNYKDKKLNI 105
>TRA2A_HUMAN (Q13595) Transformer-2 protein homolog (TRA-2 alpha)| Length = 282 Score = 52.4 bits (124), Expect = 6e-07 Identities = 37/104 (35%), Positives = 54/104 (51%), Gaps = 9/104 (8%) Frame = +2 Query: 32 RRAASHGDYDEQDRRVKGAE--------VFVGGLPRSATEGTLREIFSTCGEIVDLRIMK 187 RR+ SH + RR G+ + V GL TE LRE+FS G + + ++ Sbjct: 94 RRSRSHSPMSNR-RRHTGSRANPDPNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVY 152 Query: 188 DQN-GVSKGFGFVRFAERECAYIAKRQKNGVELQGKRLAVDLSL 316 DQ G S+GF FV F + + A + NG+EL G+R+ VD S+ Sbjct: 153 DQRTGRSRGFAFVYFERIDDSKEAMERANGMELDGRRIRVDYSI 196
>GRP2_SINAL (P49311) Glycine-rich RNA-binding protein GRP2A| Length = 169 Score = 52.4 bits (124), Expect = 6e-07 Identities = 29/72 (40%), Positives = 42/72 (58%), Gaps = 1/72 (1%) Frame = +2 Query: 95 FVGGLPRSATEGTLREIFSTCGEIVDLRIMKD-QNGVSKGFGFVRFAERECAYIAKRQKN 271 FVGGL + E +L FS GE+VD +I+ D + G S+GFGFV F + + A N Sbjct: 11 FVGGLAWATDERSLETAFSQFGELVDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEGMN 70 Query: 272 GVELQGKRLAVD 307 G +L G+ + V+ Sbjct: 71 GQDLDGRSITVN 82
>PABP_DROME (P21187) Polyadenylate-binding protein (Poly(A)-binding protein)| (PABP) Length = 634 Score = 52.4 bits (124), Expect = 6e-07 Identities = 35/122 (28%), Positives = 56/122 (45%), Gaps = 9/122 (7%) Frame = +2 Query: 59 DEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAER 238 D RR VF+ L R+ + + FS G I+ ++ D+ G SKG+GFV F Sbjct: 81 DPSLRRSGVGNVFIKNLDRAIDNKAIYDTFSAFGNILSCKVATDEKGNSKGYGFVHFETE 140 Query: 239 ECAYIAKRQKNGVELQGKRLAV---------DLSLDQDTLFFGNLCKEWSAEEFEELIHK 391 E A + + NG+ L GK++ V + L + F N+ + E+F++ K Sbjct: 141 EAANTSIDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFTEDFDDEKLK 200 Query: 392 TF 397 F Sbjct: 201 EF 202 Score = 51.6 bits (122), Expect = 1e-06 Identities = 39/126 (30%), Positives = 59/126 (46%), Gaps = 1/126 (0%) Frame = +2 Query: 92 VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKRQKN 271 V+V + L+E F G+I ++M ++G SKGFGFV F E A A + N Sbjct: 185 VYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQALN 244 Query: 272 GVEL-QGKRLAVDLSLDQDTLFFGNLCKEWSAEEFEELIHKTFKDVISVDLAMAPNLDSS 448 G ++ +GK L V + + ++ +FEEL K + V V+L NLD + Sbjct: 245 GKDMGEGKSLYVARAQKKAER------QQELKRKFEELKQKRHESVFGVNL-YVKNLDDT 297 Query: 449 TSKRRL 466 RL Sbjct: 298 IDDDRL 303 Score = 45.4 bits (106), Expect = 7e-05 Identities = 29/79 (36%), Positives = 39/79 (49%) Frame = +2 Query: 77 VKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIA 256 V G ++V L + + LR FS G I ++M D+ G SKGFGFV F A A Sbjct: 284 VFGVNLYVKNLDDTIDDDRLRIAFSPYGNITSAKVMTDEEGRSKGFGFVCFNAASEATCA 343 Query: 257 KRQKNGVELQGKRLAVDLS 313 + NG + K L V L+ Sbjct: 344 VTELNGRVVGSKPLYVALA 362 Score = 33.5 bits (75), Expect = 0.28 Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 1/51 (1%) Frame = +2 Query: 86 AEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQ-NGVSKGFGFVRFAE 235 A ++VG LP+ E L + FS+ G ++ +R+ +D S G+ +V F + Sbjct: 2 ASLYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQ 52
>GRPA_MAIZE (P10979) Glycine-rich RNA-binding, abscisic acid-inducible protein| Length = 157 Score = 52.4 bits (124), Expect = 6e-07 Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 1/72 (1%) Frame = +2 Query: 95 FVGGLPRSATEGTLREIFSTCGEIVDLRIMKD-QNGVSKGFGFVRFAERECAYIAKRQKN 271 FVGGL + + +L F++ GEI+D +++ D + G S+GFGFV F+ A N Sbjct: 11 FVGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSENSMLDAIENMN 70 Query: 272 GVELQGKRLAVD 307 G EL G+ + V+ Sbjct: 71 GKELDGRNITVN 82
>GRP1_DAUCA (Q03878) Glycine-rich RNA-binding protein| Length = 157 Score = 52.4 bits (124), Expect = 6e-07 Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 1/72 (1%) Frame = +2 Query: 95 FVGGLPRSATEGTLREIFSTCGEIVDLRIMKD-QNGVSKGFGFVRFAERECAYIAKRQKN 271 FVGGL + + +L + FS G+I D +I+ D + G S+GFGFV F + + A N Sbjct: 9 FVGGLAWATNDESLEQAFSQFGDITDSKIINDRETGRSRGFGFVTFKDEKSMRDAIEGMN 68 Query: 272 GVELQGKRLAVD 307 G EL G+ + V+ Sbjct: 69 GQELDGRNITVN 80
>TRA2A_MOUSE (Q6PFR5) Transformer-2 protein homolog (TRA-2 alpha)| Length = 281 Score = 52.4 bits (124), Expect = 6e-07 Identities = 37/104 (35%), Positives = 54/104 (51%), Gaps = 9/104 (8%) Frame = +2 Query: 32 RRAASHGDYDEQDRRVKGAE--------VFVGGLPRSATEGTLREIFSTCGEIVDLRIMK 187 RR+ SH + RR G+ + V GL TE LRE+FS G + + ++ Sbjct: 92 RRSRSHSPMSNR-RRHTGSRANPDPNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVY 150 Query: 188 DQN-GVSKGFGFVRFAERECAYIAKRQKNGVELQGKRLAVDLSL 316 DQ G S+GF FV F + + A + NG+EL G+R+ VD S+ Sbjct: 151 DQRTGRSRGFAFVYFERIDDSKEAMERANGMELDGRRIRVDYSI 194
>BOLL_MOUSE (Q924M5) Protein boule-like| Length = 281 Score = 52.4 bits (124), Expect = 6e-07 Identities = 24/71 (33%), Positives = 42/71 (59%) Frame = +2 Query: 92 VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKRQKN 271 +FVGG+ E LR+ FS G + +++I+ D+ GVSKG+GF+ F +E A ++ Sbjct: 35 IFVGGIDFKTNENDLRKFFSQYGSVKEVKIVNDRAGVSKGYGFITFETQEDAQKILQEAE 94 Query: 272 GVELQGKRLAV 304 + + K+L + Sbjct: 95 KLNYKDKKLNI 105
>PABP3_HUMAN (Q9H361) Polyadenylate-binding protein 3 (Poly(A)-binding protein| 3) (PABP 3) (Testis-specific poly(A)-binding protein) Length = 631 Score = 52.0 bits (123), Expect = 8e-07 Identities = 25/71 (35%), Positives = 40/71 (56%) Frame = +2 Query: 92 VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKRQKN 271 V++ + L+++F G + +++M D++G SKGFGFV F E A A + N Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252 Query: 272 GVELQGKRLAV 304 G EL GK++ V Sbjct: 253 GKELNGKQIYV 263 Score = 48.1 bits (113), Expect = 1e-05 Identities = 28/82 (34%), Positives = 43/82 (52%) Frame = +2 Query: 59 DEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAER 238 D R+ +FV L +S L + S G I+ ++ D+NG SKG+GFV F Sbjct: 90 DPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENG-SKGYGFVHFETH 148 Query: 239 ECAYIAKRQKNGVELQGKRLAV 304 E A A ++ NG+ L G+++ V Sbjct: 149 EAAERAIKKMNGMLLNGRKVFV 170 Score = 40.8 bits (94), Expect = 0.002 Identities = 33/103 (32%), Positives = 52/103 (50%), Gaps = 4/103 (3%) Frame = +2 Query: 17 EPKMDRRAASHGDYDE--QDR--RVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIM 184 + K++R+ +++ QDR R + ++V L + LR+ FS G I ++M Sbjct: 267 QKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVM 326 Query: 185 KDQNGVSKGFGFVRFAERECAYIAKRQKNGVELQGKRLAVDLS 313 + G SKGFGFV F+ E A A + NG + K L V L+ Sbjct: 327 ME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
>PABP1_HUMAN (P11940) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 52.0 bits (123), Expect = 8e-07 Identities = 25/71 (35%), Positives = 40/71 (56%) Frame = +2 Query: 92 VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKRQKN 271 V++ + L+++F G + +++M D++G SKGFGFV F E A A + N Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252 Query: 272 GVELQGKRLAV 304 G EL GK++ V Sbjct: 253 GKELNGKQIYV 263 Score = 47.8 bits (112), Expect = 1e-05 Identities = 27/82 (32%), Positives = 44/82 (53%) Frame = +2 Query: 59 DEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAER 238 D R+ +F+ L +S L + FS G I+ +++ D+NG SKG+GFV F + Sbjct: 90 DPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQ 148 Query: 239 ECAYIAKRQKNGVELQGKRLAV 304 E A A + NG+ L +++ V Sbjct: 149 EAAERAIEKMNGMLLNDRKVFV 170 Score = 43.5 bits (101), Expect = 3e-04 Identities = 34/103 (33%), Positives = 53/103 (51%), Gaps = 4/103 (3%) Frame = +2 Query: 17 EPKMDRRAASHGDYDE--QDR--RVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIM 184 + K++R+ +++ QDR R +G ++V L + LR+ FS G I ++M Sbjct: 267 QKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVM 326 Query: 185 KDQNGVSKGFGFVRFAERECAYIAKRQKNGVELQGKRLAVDLS 313 + G SKGFGFV F+ E A A + NG + K L V L+ Sbjct: 327 ME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
>PABP1_BOVIN (P61286) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 52.0 bits (123), Expect = 8e-07 Identities = 25/71 (35%), Positives = 40/71 (56%) Frame = +2 Query: 92 VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKRQKN 271 V++ + L+++F G + +++M D++G SKGFGFV F E A A + N Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252 Query: 272 GVELQGKRLAV 304 G EL GK++ V Sbjct: 253 GKELNGKQIYV 263 Score = 47.8 bits (112), Expect = 1e-05 Identities = 27/82 (32%), Positives = 44/82 (53%) Frame = +2 Query: 59 DEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAER 238 D R+ +F+ L +S L + FS G I+ +++ D+NG SKG+GFV F + Sbjct: 90 DPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQ 148 Query: 239 ECAYIAKRQKNGVELQGKRLAV 304 E A A + NG+ L +++ V Sbjct: 149 EAAERAIEKMNGMLLNDRKVFV 170 Score = 43.5 bits (101), Expect = 3e-04 Identities = 34/103 (33%), Positives = 53/103 (51%), Gaps = 4/103 (3%) Frame = +2 Query: 17 EPKMDRRAASHGDYDE--QDR--RVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIM 184 + K++R+ +++ QDR R +G ++V L + LR+ FS G I ++M Sbjct: 267 QKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVM 326 Query: 185 KDQNGVSKGFGFVRFAERECAYIAKRQKNGVELQGKRLAVDLS 313 + G SKGFGFV F+ E A A + NG + K L V L+ Sbjct: 327 ME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
>IST3_YEAST (P40565) U2 snRNP component IST3 (U2 snRNP protein SNU17)| (Increased sodium tolerance protein 3) Length = 148 Score = 52.0 bits (123), Expect = 8e-07 Identities = 26/88 (29%), Positives = 49/88 (55%), Gaps = 1/88 (1%) Frame = +2 Query: 47 HGDYDEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQN-GVSKGFGFV 223 H +Y + A +++G L R TEG + +FS G VD+ + +D+N G S+GF ++ Sbjct: 24 HNEYKDN------AYIYIGNLNRELTEGDILTVFSEYGVPVDVILSRDENTGESQGFAYL 77 Query: 224 RFAERECAYIAKRQKNGVELQGKRLAVD 307 ++ ++ +A NG ++ G+ L +D Sbjct: 78 KYEDQRSTILAVDNLNGFKIGGRALKID 105
>ROC2_NICPL (P49314) 31 kDa ribonucleoprotein, chloroplast precursor (CP-RBP31)| Length = 292 Score = 52.0 bits (123), Expect = 8e-07 Identities = 28/83 (33%), Positives = 47/83 (56%), Gaps = 1/83 (1%) Frame = +2 Query: 62 EQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQ-NGVSKGFGFVRFAER 238 EQ R + ++FVG LP S L +F G + + ++ D+ +G S+GFGFV + + Sbjct: 80 EQPRFSEDLKLFVGNLPFSVDSAALAGLFERAGNVEIVEVIYDKLSGRSRGFGFVTMSTK 139 Query: 239 ECAYIAKRQKNGVELQGKRLAVD 307 E A++Q NG E+ G+ + V+ Sbjct: 140 EEVEAAEQQFNGYEIDGRAIRVN 162 Score = 47.8 bits (112), Expect = 1e-05 Identities = 25/72 (34%), Positives = 43/72 (59%), Gaps = 1/72 (1%) Frame = +2 Query: 92 VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQ-NGVSKGFGFVRFAERECAYIAKRQK 268 V+VG L + L+E+FS G +VD +++ D+ +G S+GFGFV ++ + A Sbjct: 210 VYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDAIDSL 269 Query: 269 NGVELQGKRLAV 304 NG++L G+ + V Sbjct: 270 NGIDLDGRSIRV 281
>RBM3_MOUSE (O89086) Putative RNA-binding protein 3 (RNA-binding motif protein| 3) Length = 153 Score = 51.6 bits (122), Expect = 1e-06 Identities = 29/74 (39%), Positives = 44/74 (59%), Gaps = 1/74 (1%) Frame = +2 Query: 89 EVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGV-SKGFGFVRFAERECAYIAKRQ 265 ++FVGGL + E L + FS+ G I ++ ++KD+ S+GFGF+ F E A A R Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRA 66 Query: 266 KNGVELQGKRLAVD 307 NG L G+++ VD Sbjct: 67 MNGESLDGRQIRVD 80
>ROC2_NICSY (Q08937) 29 kDa ribonucleoprotein B, chloroplast precursor (CP29B)| Length = 291 Score = 51.6 bits (122), Expect = 1e-06 Identities = 28/83 (33%), Positives = 46/83 (55%), Gaps = 1/83 (1%) Frame = +2 Query: 62 EQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQ-NGVSKGFGFVRFAER 238 EQ R + ++FVG LP S L +F G + + ++ D+ G S+GFGFV + + Sbjct: 79 EQPRFSEDLKLFVGNLPFSVDSAALAGLFERAGNVEMVEVIYDKLTGRSRGFGFVTMSTK 138 Query: 239 ECAYIAKRQKNGVELQGKRLAVD 307 E A++Q NG E+ G+ + V+ Sbjct: 139 EEVEAAEQQFNGYEIDGRAIRVN 161 Score = 48.1 bits (113), Expect = 1e-05 Identities = 26/72 (36%), Positives = 43/72 (59%), Gaps = 1/72 (1%) Frame = +2 Query: 92 VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQN-GVSKGFGFVRFAERECAYIAKRQK 268 V+VG L + L+E+FS G +VD +++ D++ G S+GFGFV ++ + A Sbjct: 209 VYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVNDAIDSL 268 Query: 269 NGVELQGKRLAV 304 NGV+L G+ + V Sbjct: 269 NGVDLDGRSIRV 280
>EPABA_XENLA (Q98SP8) Embryonic polyadenylate-binding protein-A (Embryonic| poly(A) binding protein-A) (ePABP-A) (ePAB-A) (XePABP-A) Length = 629 Score = 51.6 bits (122), Expect = 1e-06 Identities = 25/71 (35%), Positives = 39/71 (54%) Frame = +2 Query: 92 VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKRQKN 271 V++ + LREIFS G + +++M D +G S+GFGFV + E A A + N Sbjct: 193 VYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDSGRSRGFGFVNYGNHEEAQKAVSEMN 252 Query: 272 GVELQGKRLAV 304 G E+ G+ + V Sbjct: 253 GKEVNGRMIYV 263 Score = 43.1 bits (100), Expect = 4e-04 Identities = 24/71 (33%), Positives = 39/71 (54%) Frame = +2 Query: 92 VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKRQKN 271 VF+ L S L + FS G I+ +++ D++G S+G+GFV F E A A + N Sbjct: 101 VFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHG-SRGYGFVHFETHEAANRAIQTMN 159 Query: 272 GVELQGKRLAV 304 G+ L +++ V Sbjct: 160 GMLLNDRKVFV 170 Score = 41.2 bits (95), Expect = 0.001 Identities = 29/84 (34%), Positives = 42/84 (50%) Frame = +2 Query: 62 EQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERE 241 E+ R +G ++V L + LR+ F G I ++M + G SKGFGFV F+ E Sbjct: 286 ERINRYQGVNLYVKNLDDGIDDDRLRKEFLPYGTITSAKVMTE-GGHSKGFGFVCFSSPE 344 Query: 242 CAYIAKRQKNGVELQGKRLAVDLS 313 A A + NG + K L V L+ Sbjct: 345 EATKAVTEMNGRIVSTKPLYVALA 368
>YP85_CAEEL (Q09442) Putative RNA-binding protein C08B11.5| Length = 388 Score = 51.6 bits (122), Expect = 1e-06 Identities = 43/138 (31%), Positives = 67/138 (48%), Gaps = 10/138 (7%) Frame = +2 Query: 74 RVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQ-NGVSKGFGFVRFAERECAY 250 R + A ++VGGL +E L E+ G +V + + KD+ +GFGFV F E A Sbjct: 9 RNQDATIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDAD 68 Query: 251 IAKRQKNGVELQGKRLAVDLSLDQD-------TLFFGNLCKEWSAEEFEELIHKTFK--D 403 A + N ++L GK + V+ + + +F GNL E E+L++ TF Sbjct: 69 YAIKILNMIKLYGKPIKVNKASAHEKNMDVGANIFVGNL----DPEVDEKLLYDTFSAFG 124 Query: 404 VISVDLAMAPNLDSSTSK 457 VI + ++DS TSK Sbjct: 125 VILQVPKIMRDVDSGTSK 142 Score = 48.9 bits (115), Expect = 6e-06 Identities = 30/84 (35%), Positives = 44/84 (52%), Gaps = 2/84 (2%) Frame = +2 Query: 83 GAEVFVGGLPRSATEGTLREIFSTCGEIVDL-RIMKD-QNGVSKGFGFVRFAERECAYIA 256 GA +FVG L E L + FS G I+ + +IM+D +G SKGF F+ FA E + A Sbjct: 99 GANIFVGNLDPEVDEKLLYDTFSAFGVILQVPKIMRDVDSGTSKGFAFINFASFEASDTA 158 Query: 257 KRQKNGVELQGKRLAVDLSLDQDT 328 NG L + + V + +D+ Sbjct: 159 LEAMNGQFLCNRAITVSYAFKRDS 182
>RBY1A_HUMAN (Q15414) RNA-binding motif protein, Y chromosome, family 1 member| A1 (RNA-binding motif protein 1) Length = 496 Score = 51.6 bits (122), Expect = 1e-06 Identities = 25/73 (34%), Positives = 40/73 (54%) Frame = +2 Query: 89 EVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKRQK 268 ++F+GGL R E L+ +F G I ++ ++KD+ S+GF F+ F A A + Sbjct: 9 KLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDM 68 Query: 269 NGVELQGKRLAVD 307 NG L GK + V+ Sbjct: 69 NGKSLHGKAIKVE 81
>RNPC1_HUMAN (Q9H0Z9) RNA-binding region-containing protein 1 (HSRNASEB) (ssDNA| binding protein SEB4) (CLL-associated antigen KW-5) Length = 216 Score = 51.6 bits (122), Expect = 1e-06 Identities = 28/76 (36%), Positives = 47/76 (61%), Gaps = 1/76 (1%) Frame = +2 Query: 89 EVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKD-QNGVSKGFGFVRFAERECAYIAKRQ 265 ++FVGGLP T+ +LR+ F G+I + ++ D Q G S+G+GFV A+R A A + Sbjct: 12 KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71 Query: 266 KNGVELQGKRLAVDLS 313 N + + G++ V+L+ Sbjct: 72 PNPI-IDGRKANVNLA 86
>RNPC1_MOUSE (Q62176) RNA-binding region-containing protein 1 (ssDNA binding| protein SEB4) Length = 237 Score = 51.2 bits (121), Expect = 1e-06 Identities = 28/76 (36%), Positives = 47/76 (61%), Gaps = 1/76 (1%) Frame = +2 Query: 89 EVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKD-QNGVSKGFGFVRFAERECAYIAKRQ 265 ++FVGGLP T+ +LR+ F G+I + ++ D Q G S+G+GFV A+R A A + Sbjct: 33 KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAADRACKD 92 Query: 266 KNGVELQGKRLAVDLS 313 N + + G++ V+L+ Sbjct: 93 PNPI-IDGRKANVNLA 107
>EPAB_XENTR (Q6DEY7) Embryonic polyadenylate-binding protein (Embryonic poly(A)| binding protein) (ePABP) Length = 629 Score = 51.2 bits (121), Expect = 1e-06 Identities = 25/71 (35%), Positives = 38/71 (53%) Frame = +2 Query: 92 VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKRQKN 271 V++ + LREIFS G + +++M D G S+GFGFV + E A A + N Sbjct: 193 VYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDTGRSRGFGFVNYGNHEEAQKAVSEMN 252 Query: 272 GVELQGKRLAV 304 G E+ G+ + V Sbjct: 253 GKEVNGRMIYV 263 Score = 43.5 bits (101), Expect = 3e-04 Identities = 30/84 (35%), Positives = 43/84 (51%) Frame = +2 Query: 62 EQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERE 241 E+ R +G ++V L + LR+ FS G I ++M + G SKGFGFV F+ E Sbjct: 286 ERINRYQGVNLYVKNLDDGIDDDRLRKEFSPYGTITSAKVMTE-GGHSKGFGFVCFSSPE 344 Query: 242 CAYIAKRQKNGVELQGKRLAVDLS 313 A A + NG + K L V L+ Sbjct: 345 EATKAVTEMNGRIVSTKPLYVALA 368 Score = 43.5 bits (101), Expect = 3e-04 Identities = 24/71 (33%), Positives = 40/71 (56%) Frame = +2 Query: 92 VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKRQKN 271 VF+ L S L + FS G I+ +++ D++G S+G+GFV F +E A A + N Sbjct: 101 VFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHG-SRGYGFVHFETQEAANRAIQTMN 159 Query: 272 GVELQGKRLAV 304 G+ L +++ V Sbjct: 160 GMLLNDRKVFV 170
>HNRPM_HUMAN (P52272) Heterogeneous nuclear ribonucleoprotein M (hnRNP M)| Length = 729 Score = 50.8 bits (120), Expect = 2e-06 Identities = 30/82 (36%), Positives = 47/82 (57%) Frame = +2 Query: 80 KGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAK 259 K ++FV LP T L++ F+ CG ++ I K +NG SKG G V+F E A A Sbjct: 650 KACQIFVRNLPFDFTWKMLKDKFNECGHVLYADI-KMENGKSKGCGVVKFESPEVAERAC 708 Query: 260 RQKNGVELQGKRLAVDLSLDQD 325 R NG++L G+ +D+ +D++ Sbjct: 709 RMMNGMKLSGRE--IDVRIDRN 728 Score = 38.5 bits (88), Expect = 0.009 Identities = 23/64 (35%), Positives = 33/64 (51%) Frame = +2 Query: 83 GAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKR 262 G+ VFV L L+E+FS G +V I++D++G S+G G V F + A A Sbjct: 202 GSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAIS 261 Query: 263 QKNG 274 NG Sbjct: 262 MFNG 265
>PABPA_XENLA (P20965) Polyadenylate-binding protein 1-A (Poly(A)-binding protein| 1-A) (Cytoplasmic poly(A)-binding protein 1-A) (PABP-A) (PABP 1-A) (xPABP1-A) Length = 633 Score = 50.8 bits (120), Expect = 2e-06 Identities = 25/71 (35%), Positives = 38/71 (53%) Frame = +2 Query: 92 VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKRQKN 271 V++ + L+E+F G + +++M D NG SKGFGFV F E A A + N Sbjct: 193 VYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDDNGKSKGFGFVSFERHEDAQKAVDEMN 252 Query: 272 GVELQGKRLAV 304 G ++ GK + V Sbjct: 253 GKDMNGKSMFV 263 Score = 47.0 bits (110), Expect = 2e-05 Identities = 27/82 (32%), Positives = 44/82 (53%) Frame = +2 Query: 59 DEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAER 238 D R+ +F+ L +S L + FS G I+ +++ D+NG SKG+GFV F + Sbjct: 90 DPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQ 148 Query: 239 ECAYIAKRQKNGVELQGKRLAV 304 E A A + NG+ L +++ V Sbjct: 149 EAAERAIDKMNGMLLNDRKVFV 170 Score = 41.2 bits (95), Expect = 0.001 Identities = 33/103 (32%), Positives = 52/103 (50%), Gaps = 4/103 (3%) Frame = +2 Query: 17 EPKMDRRAASHGDYDE--QDR--RVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIM 184 + K++R+ +++ QDR R +G ++V L + LR+ F G I ++M Sbjct: 267 QKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFLPFGTITSAKVM 326 Query: 185 KDQNGVSKGFGFVRFAERECAYIAKRQKNGVELQGKRLAVDLS 313 + G SKGFGFV F+ E A A + NG + K L V L+ Sbjct: 327 ME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
>HNRPM_MOUSE (Q9D0E1) Heterogeneous nuclear ribonucleoprotein M (hnRNP M)| Length = 728 Score = 50.8 bits (120), Expect = 2e-06 Identities = 30/82 (36%), Positives = 47/82 (57%) Frame = +2 Query: 80 KGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAK 259 K ++FV LP T L++ F+ CG ++ I K +NG SKG G V+F E A A Sbjct: 649 KACQIFVRNLPFDFTWKMLKDKFNECGHVLYADI-KMENGKSKGCGVVKFESPEVAERAC 707 Query: 260 RQKNGVELQGKRLAVDLSLDQD 325 R NG++L G+ +D+ +D++ Sbjct: 708 RMMNGMKLSGRE--IDVRIDRN 727 Score = 39.3 bits (90), Expect = 0.005 Identities = 23/64 (35%), Positives = 33/64 (51%) Frame = +2 Query: 83 GAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKR 262 G+ VFV L L+E+FS G +V I++D++G S+G G V F + A A Sbjct: 201 GSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGIVTFEQSIEAVQAIS 260 Query: 263 QKNG 274 NG Sbjct: 261 MFNG 264
>MRD1_YEAST (Q06106) Multiple RNA-binding domain-containing protein 1| Length = 887 Score = 50.8 bits (120), Expect = 2e-06 Identities = 37/138 (26%), Positives = 65/138 (47%) Frame = +2 Query: 23 KMDRRAASHGDYDEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGV 202 K+ R AS + K ++ V LP AT + E+F++ G++ +R+ K + Sbjct: 742 KLSHRQASQSGNTKTKSNKKSGKIIVKNLPFEATRKDVFELFNSFGQLKSVRVPKKFDKS 801 Query: 203 SKGFGFVRFAERECAYIAKRQKNGVELQGKRLAVDLSLDQDTLFFGNLCKEWSAEEFEEL 382 ++GF FV F + A A Q +GV L G+RL + + ++D + + EE + Sbjct: 802 ARGFAFVEFLLPKEAENAMDQLHGVHLLGRRLVMQYA-EEDAVD--------AEEEIARM 852 Query: 383 IHKTFKDVISVDLAMAPN 436 K K V + ++A N Sbjct: 853 TKKVRKQVATNEMAALRN 870 Score = 40.4 bits (93), Expect = 0.002 Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 15/91 (16%) Frame = +2 Query: 86 AEVFVGGLPRSATEGTLREIF---------------STCGEIVDLRIMKDQNGVSKGFGF 220 + + V GLP T+ LRE F S I D++I++D+NG S+ FGF Sbjct: 2 SRIIVKGLPVYLTDDNLREHFTKRLRQKHSHQAVNGSGPDLITDVKILRDRNGESRRFGF 61 Query: 221 VRFAERECAYIAKRQKNGVELQGKRLAVDLS 313 + + E A+ A NG + ++ V ++ Sbjct: 62 IGYRNEEDAFDAVEYFNGSFINTSKIEVSMA 92 Score = 32.7 bits (73), Expect = 0.48 Identities = 20/72 (27%), Positives = 39/72 (54%), Gaps = 1/72 (1%) Frame = +2 Query: 92 VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKD-QNGVSKGFGFVRFAERECAYIAKRQK 268 +F+ + ++ E R++FS GE+ ++ + D + G SKGF +V F + + A A + Sbjct: 347 LFLRNILYTSKEEDFRKLFSPFGELEEVHVALDTRTGQSKGFAYVLFKDSKNAVNAYVEL 406 Query: 269 NGVELQGKRLAV 304 + QG+ L + Sbjct: 407 DKQIFQGRLLHI 418
>HNRPG_HUMAN (P38159) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) (Glycoprotein p43) Length = 391 Score = 50.8 bits (120), Expect = 2e-06 Identities = 28/74 (37%), Positives = 39/74 (52%), Gaps = 1/74 (1%) Frame = +2 Query: 89 EVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKD-QNGVSKGFGFVRFAERECAYIAKRQ 265 ++F+GGL E L +F G IV++ +MKD + S+GF FV F A A R Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 68 Query: 266 KNGVELQGKRLAVD 307 NG L GK + V+ Sbjct: 69 MNGKSLDGKAIKVE 82
>HNRPM_RAT (Q62826) Heterogeneous nuclear ribonucleoprotein M (hnRNP M) (M4| protein) Length = 689 Score = 50.8 bits (120), Expect = 2e-06 Identities = 30/82 (36%), Positives = 47/82 (57%) Frame = +2 Query: 80 KGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAK 259 K ++FV LP T L++ F+ CG ++ I K +NG SKG G V+F E A A Sbjct: 610 KACQIFVRNLPFDFTWKMLKDKFNECGHVLYADI-KMENGKSKGCGVVKFESPEVAERAC 668 Query: 260 RQKNGVELQGKRLAVDLSLDQD 325 R NG++L G+ +D+ +D++ Sbjct: 669 RMMNGMKLSGRE--IDVRIDRN 688 Score = 38.5 bits (88), Expect = 0.009 Identities = 23/64 (35%), Positives = 33/64 (51%) Frame = +2 Query: 83 GAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKR 262 G+ VFV L L+E+FS G +V I++D++G S+G G V F + A A Sbjct: 162 GSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAIS 221 Query: 263 QKNG 274 NG Sbjct: 222 MFNG 225
>ELAV3_MOUSE (Q60900) ELAV-like protein 3 (Hu-antigen C) (HuC)| Length = 367 Score = 50.8 bits (120), Expect = 2e-06 Identities = 26/67 (38%), Positives = 43/67 (64%), Gaps = 1/67 (1%) Frame = +2 Query: 77 VKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQ-NGVSKGFGFVRFAERECAYI 253 ++ A ++V GLP++ ++ + ++FS G I+ RI+ DQ GVS+G GF+RF +R A Sbjct: 122 IRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEE 181 Query: 254 AKRQKNG 274 A + NG Sbjct: 182 AIKGLNG 188 Score = 47.8 bits (112), Expect = 1e-05 Identities = 30/104 (28%), Positives = 54/104 (51%), Gaps = 7/104 (6%) Frame = +2 Query: 92 VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQ-NGVSKGFGFVRFAERECAYIAKRQK 268 + V LP++ T+ + +F + G+I ++++D+ G S G+GFV +++ A A Sbjct: 41 LIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTL 100 Query: 269 NGVELQGKRLAV------DLSLDQDTLFFGNLCKEWSAEEFEEL 382 NG++LQ K + V S+ L+ L K S +E E+L Sbjct: 101 NGLKLQTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQL 144 Score = 35.8 bits (81), Expect = 0.057 Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 1/72 (1%) Frame = +2 Query: 92 VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKD-QNGVSKGFGFVRFAERECAYIAKRQK 268 +FV L A E L ++F G + ++++++D KGFGFV + A +A Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345 Query: 269 NGVELQGKRLAV 304 NG L + L V Sbjct: 346 NGYRLGERVLQV 357
>ELAV3_HUMAN (Q14576) ELAV-like protein 3 (Hu-antigen C) (HuC) (Paraneoplastic| cerebellar degeneration-associated antigen) (Paraneoplastic limbic encephalitis antigen 21) Length = 367 Score = 50.8 bits (120), Expect = 2e-06 Identities = 26/67 (38%), Positives = 43/67 (64%), Gaps = 1/67 (1%) Frame = +2 Query: 77 VKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQ-NGVSKGFGFVRFAERECAYI 253 ++ A ++V GLP++ ++ + ++FS G I+ RI+ DQ GVS+G GF+RF +R A Sbjct: 122 IRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEE 181 Query: 254 AKRQKNG 274 A + NG Sbjct: 182 AIKGLNG 188 Score = 47.8 bits (112), Expect = 1e-05 Identities = 30/104 (28%), Positives = 54/104 (51%), Gaps = 7/104 (6%) Frame = +2 Query: 92 VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQ-NGVSKGFGFVRFAERECAYIAKRQK 268 + V LP++ T+ + +F + G+I ++++D+ G S G+GFV +++ A A Sbjct: 41 LIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTL 100 Query: 269 NGVELQGKRLAV------DLSLDQDTLFFGNLCKEWSAEEFEEL 382 NG++LQ K + V S+ L+ L K S +E E+L Sbjct: 101 NGLKLQTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQL 144 Score = 35.8 bits (81), Expect = 0.057 Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 1/72 (1%) Frame = +2 Query: 92 VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKD-QNGVSKGFGFVRFAERECAYIAKRQK 268 +FV L A E L ++F G + ++++++D KGFGFV + A +A Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345 Query: 269 NGVELQGKRLAV 304 NG L + L V Sbjct: 346 NGYRLGERVLQV 357
>MRD1_CANAL (Q5AJS6) Multiple RNA-binding domain-containing protein 1| Length = 841 Score = 50.8 bits (120), Expect = 2e-06 Identities = 36/117 (30%), Positives = 57/117 (48%) Frame = +2 Query: 80 KGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAK 259 K +++ + LP AT L E+F G++ +R+ K + ++GF FV F + A A Sbjct: 715 KSSKIIIKNLPFEATRKDLLELFGAFGQLKSVRVPKKFDQSARGFAFVEFNLMKEAETAM 774 Query: 260 RQKNGVELQGKRLAVDLSLDQDTLFFGNLCKEWSAEEFEELIHKTFKDVISVDLAMA 430 Q GV L G+RL + + +QD E + E E + K K V + +LA A Sbjct: 775 SQLEGVHLLGRRLVMQYA-EQD--------PENAEVEIERMTKKVKKQVATQNLAAA 822 Score = 50.1 bits (118), Expect = 3e-06 Identities = 25/76 (32%), Positives = 43/76 (56%) Frame = +2 Query: 86 AEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKRQ 265 + + V GLP+ TE LRE FS G++ D+++MK +NG S+ F F+ + + A A + Sbjct: 2 SRLIVKGLPKYYTEEKLREFFSKQGDVTDVKLMKKRNGESRKFAFIGYKSADAAERAVKY 61 Query: 266 KNGVELQGKRLAVDLS 313 N + R+ V+ + Sbjct: 62 FNKSFIDTARIEVEFA 77 Score = 37.0 bits (84), Expect = 0.025 Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 1/72 (1%) Frame = +2 Query: 92 VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKD-QNGVSKGFGFVRFAERECAYIAKRQK 268 +F+ + A+E R +FS G + ++ I D + G SKGF +V+F ++E A A R Sbjct: 312 LFIRNISYEASEEDFRSLFSQYGALEEVHIAIDTRTGKSKGFLYVQFLKKEDATRAYRSL 371 Query: 269 NGVELQGKRLAV 304 + QG+ L + Sbjct: 372 DKQIFQGRLLHI 383
>ELAV1_HUMAN (Q15717) ELAV-like protein 1 (Hu-antigen R) (HuR)| Length = 326 Score = 50.8 bits (120), Expect = 2e-06 Identities = 25/67 (37%), Positives = 42/67 (62%), Gaps = 1/67 (1%) Frame = +2 Query: 77 VKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQN-GVSKGFGFVRFAERECAYI 253 +K A +++ GLPR+ T+ + ++FS G I++ R++ DQ G+S+G F+RF +R A Sbjct: 103 IKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEE 162 Query: 254 AKRQKNG 274 A NG Sbjct: 163 AITSFNG 169 Score = 47.0 bits (110), Expect = 2e-05 Identities = 28/107 (26%), Positives = 55/107 (51%), Gaps = 7/107 (6%) Frame = +2 Query: 92 VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQ-NGVSKGFGFVRFAERECAYIAKRQK 268 + V LP++ T+ LR +FS+ GE+ ++++D+ G S G+GFV + + A A Sbjct: 22 LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTL 81 Query: 269 NGVELQGKRLAVDLS------LDQDTLFFGNLCKEWSAEEFEELIHK 391 NG+ LQ K + V + + L+ L + + ++ E++ + Sbjct: 82 NGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRTMTQKDVEDMFSR 128 Score = 42.4 bits (98), Expect = 6e-04 Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 1/78 (1%) Frame = +2 Query: 92 VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQN-GVSKGFGFVRFAERECAYIAKRQK 268 +F+ L + A EG L ++F G + ++++++D N KGFGFV E A +A Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305 Query: 269 NGVELQGKRLAVDLSLDQ 322 NG L K L V ++ Sbjct: 306 NGYRLGDKILQVSFKTNK 323
>ROAA_HUMAN (Q99729) Heterogeneous nuclear ribonucleoprotein A/B (hnRNP A/B)| (APOBEC-1-binding protein 1) (ABBP-1) Length = 331 Score = 50.8 bits (120), Expect = 2e-06 Identities = 39/146 (26%), Positives = 62/146 (42%), Gaps = 5/146 (3%) Frame = +2 Query: 20 PKMDRRAASHGDYDEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQN- 196 P+ R A + ++FVGGL ++ L++ F+ GE+VD I D N Sbjct: 46 PRAGIRTAPRDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNT 105 Query: 197 GVSKGFGFVRFAERECAYIAKRQK----NGVELQGKRLAVDLSLDQDTLFFGNLCKEWSA 364 G S+GFGF+ F + QK +G + K+ +F G L E Sbjct: 106 GRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKAMAMKKDPVKKIFVGGLNPESPT 165 Query: 365 EEFEELIHKTFKDVISVDLAMAPNLD 442 EE F ++ +++L M P L+ Sbjct: 166 EEKIREYFGEFGEIEAIELPMDPKLN 191
>ROC3_ARATH (Q04836) 31 kDa ribonucleoprotein, chloroplast precursor| (RNA-binding protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33) (RNA-binding protein cp31) Length = 329 Score = 50.4 bits (119), Expect = 2e-06 Identities = 31/96 (32%), Positives = 53/96 (55%), Gaps = 3/96 (3%) Frame = +2 Query: 35 RAASHGDYDEQDRRV--KGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKD-QNGVS 205 +AA G E+ RV V+VG LP G L ++FS G++V+ R++ D + G S Sbjct: 225 KAAPRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRS 284 Query: 206 KGFGFVRFAERECAYIAKRQKNGVELQGKRLAVDLS 313 +GFGFV ++ + A +G L+G+ + V+++ Sbjct: 285 RGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVA 320 Score = 37.0 bits (84), Expect = 0.025 Identities = 29/102 (28%), Positives = 47/102 (46%), Gaps = 2/102 (1%) Frame = +2 Query: 8 EGEEPKMDRRAASHGDYDEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCG--EIVDLRI 181 EG+E + D + + E + A++FVG L L +F G EI ++ I Sbjct: 124 EGDESEGDVSEGAVSERAEFPEPSEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEV-I 182 Query: 182 MKDQNGVSKGFGFVRFAERECAYIAKRQKNGVELQGKRLAVD 307 + S+GFGFV + + A A + N +L G+ L V+ Sbjct: 183 YNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVN 224
>SXL_MEGSC (O01671) Sex-lethal homolog| Length = 321 Score = 50.4 bits (119), Expect = 2e-06 Identities = 34/110 (30%), Positives = 51/110 (46%), Gaps = 7/110 (6%) Frame = +2 Query: 83 GAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKD-QNGVSKGFGFVRFAERECAYIAK 259 G + V LP+ + L +F T G I RIM+D + G S G+GFV F A A Sbjct: 77 GTNLIVNYLPQDMQDRELYSLFRTIGPINTCRIMRDYKTGYSYGYGFVDFGSEADALRAI 136 Query: 260 RQKNGVELQGKRLAVDLS------LDQDTLFFGNLCKEWSAEEFEELIHK 391 NG+ ++ KR+ V + L L+ NL + + E+ E + K Sbjct: 137 NNLNGITVRNKRIKVSFARPGGEQLRDTNLYVTNLSRSITDEQLETIFGK 186
>GRP1_SINAL (P49310) Glycine-rich RNA-binding protein GRP1A| Length = 166 Score = 50.1 bits (118), Expect = 3e-06 Identities = 27/72 (37%), Positives = 41/72 (56%), Gaps = 1/72 (1%) Frame = +2 Query: 95 FVGGLPRSATEGTLREIFSTCGEIVDLRIMKD-QNGVSKGFGFVRFAERECAYIAKRQKN 271 FVGGL + + L FS GE++D +I+ D + G S+GFGFV F + + A N Sbjct: 11 FVGGLAWATDDRALETAFSQYGEVLDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEGMN 70 Query: 272 GVELQGKRLAVD 307 G +L G+ + V+ Sbjct: 71 GQDLDGRSITVN 82
>EPABB_XENLA (Q6GR16) Embryonic polyadenylate-binding protein-B (Embryonic| poly(A) binding protein-B) (ePABP-B) (ePAB-B) (XePABP-B) Length = 629 Score = 50.1 bits (118), Expect = 3e-06 Identities = 24/71 (33%), Positives = 39/71 (54%) Frame = +2 Query: 92 VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKRQKN 271 V++ + L+EIFS G + +++M D +G S+GFGFV + E A A + N Sbjct: 193 VYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMDNSGRSRGFGFVNYGNHEEAQKAVTEMN 252 Query: 272 GVELQGKRLAV 304 G E+ G+ + V Sbjct: 253 GKEVNGRMVYV 263 Score = 43.5 bits (101), Expect = 3e-04 Identities = 30/84 (35%), Positives = 43/84 (51%) Frame = +2 Query: 62 EQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERE 241 E+ R +G ++V L + LR+ FS G I ++M + G SKGFGFV F+ E Sbjct: 286 ERINRYQGVNLYVKNLDDGIDDDRLRKEFSPYGTITSTKVMTE-GGHSKGFGFVCFSSPE 344 Query: 242 CAYIAKRQKNGVELQGKRLAVDLS 313 A A + NG + K L V L+ Sbjct: 345 EATKAVTEMNGRIVSTKPLYVALA 368 Score = 42.4 bits (98), Expect = 6e-04 Identities = 24/71 (33%), Positives = 40/71 (56%) Frame = +2 Query: 92 VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKRQKN 271 VF+ L S L + FS G+I+ +++ D+ G S+G+GFV F +E A A + N Sbjct: 101 VFIKNLDDSIDNKALYDTFSAFGDILSCKVVCDEYG-SRGYGFVHFETQEAANRAIQTMN 159 Query: 272 GVELQGKRLAV 304 G+ L +++ V Sbjct: 160 GMLLNDRKVFV 170
>ROA0_HUMAN (Q13151) Heterogeneous nuclear ribonucleoprotein A0 (hnRNP A0)| Length = 305 Score = 50.1 bits (118), Expect = 3e-06 Identities = 35/104 (33%), Positives = 51/104 (49%), Gaps = 1/104 (0%) Frame = +2 Query: 32 RRAASHGDYDEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKD-QNGVSK 208 +RA S D K ++FVGGL EG L E FS G + I+ D Q+G + Sbjct: 80 KRAVSREDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKR 139 Query: 209 GFGFVRFAERECAYIAKRQKNGVELQGKRLAVDLSLDQDTLFFG 340 GFGFV F + A A K +QG R+ V ++ ++ ++ G Sbjct: 140 GFGFVYFQNHDAADKAAVVKFH-PIQGHRVEVKKAVPKEDIYSG 182
>CIRBP_PONPY (Q5RF83) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) Length = 172 Score = 50.1 bits (118), Expect = 3e-06 Identities = 27/74 (36%), Positives = 44/74 (59%), Gaps = 1/74 (1%) Frame = +2 Query: 89 EVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKD-QNGVSKGFGFVRFAERECAYIAKRQ 265 ++FVGGL E +L ++FS G+I ++ ++KD + S+GFGFV F + A A Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66 Query: 266 KNGVELQGKRLAVD 307 NG + G+++ VD Sbjct: 67 MNGKSVDGRQIRVD 80
>CIRBP_HUMAN (Q14011) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 50.1 bits (118), Expect = 3e-06 Identities = 27/74 (36%), Positives = 44/74 (59%), Gaps = 1/74 (1%) Frame = +2 Query: 89 EVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKD-QNGVSKGFGFVRFAERECAYIAKRQ 265 ++FVGGL E +L ++FS G+I ++ ++KD + S+GFGFV F + A A Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66 Query: 266 KNGVELQGKRLAVD 307 NG + G+++ VD Sbjct: 67 MNGKSVDGRQIRVD 80
>DAZL_CHICK (Q804A9) Deleted in azoospermia-like (DAZ-like protein)| Length = 289 Score = 50.1 bits (118), Expect = 3e-06 Identities = 28/86 (32%), Positives = 47/86 (54%) Frame = +2 Query: 92 VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKRQKN 271 VFVGG+ E +R F G + +++I+ D+ GVSKG+GFV F + + K ++ Sbjct: 38 VFVGGIDIRMNEAEIRSYFEQYGTVKEVKIITDRTGVSKGYGFVSFLDN--VDVQKIVES 95 Query: 272 GVELQGKRLAVDLSLDQDTLFFGNLC 349 + + GKRL + ++ + NLC Sbjct: 96 QISVHGKRLKLGPAIRKQQ----NLC 117
>ROC1_NICPL (P49313) 30 kDa ribonucleoprotein, chloroplast precursor (CP-RBP30)| Length = 279 Score = 50.1 bits (118), Expect = 3e-06 Identities = 28/74 (37%), Positives = 42/74 (56%), Gaps = 1/74 (1%) Frame = +2 Query: 89 EVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQ-NGVSKGFGFVRFAERECAYIAKRQ 265 ++FVG L SA L E+F G + + ++ D+ G S+GFGFV + +E A +Q Sbjct: 88 KIFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQ 147 Query: 266 KNGVELQGKRLAVD 307 NG EL G+ L V+ Sbjct: 148 FNGYELDGRALRVN 161 Score = 48.5 bits (114), Expect = 8e-06 Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 1/86 (1%) Frame = +2 Query: 50 GDYDEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQN-GVSKGFGFVR 226 G +D +R V+VG L + L +FS G++VD +++ D++ G S+GFGFV Sbjct: 188 GSFDSSNR------VYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVT 241 Query: 227 FAERECAYIAKRQKNGVELQGKRLAV 304 ++ E A +GV+L G+ + V Sbjct: 242 YSSAEEVNNAIESLDGVDLNGRAIRV 267
>DAZ1_CAEEL (Q20870) DAZ protein 1| Length = 499 Score = 49.7 bits (117), Expect = 4e-06 Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 1/70 (1%) Frame = +2 Query: 92 VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRF-AERECAYIAKRQK 268 +FVGG P S TE LRE F + D++++K +G SKG+GF+ F E + I K Sbjct: 69 IFVGGFPTSTTETELREHFEKFFAVKDVKMVKSLDGQSKGYGFITFETEDQAEEIRKLTP 128 Query: 269 NGVELQGKRL 298 +E + ++L Sbjct: 129 KQLEFRSRKL 138
>BOULE_DROME (Q24207) Protein boule| Length = 228 Score = 49.7 bits (117), Expect = 4e-06 Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 10/70 (14%) Frame = +2 Query: 92 VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRF----------AERE 241 +FVGG+ TE L +FS G + +I+ D+ GVSKG+GFV F A+ E Sbjct: 35 IFVGGISGDTTEADLTRVFSAYGTVKSTKIIVDRAGVSKGYGFVTFETEQEAQRLQADGE 94 Query: 242 CAYIAKRQKN 271 C + R+ N Sbjct: 95 CVVLRDRKLN 104
>CIRBP_RAT (P60825) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 49.7 bits (117), Expect = 4e-06 Identities = 27/74 (36%), Positives = 43/74 (58%), Gaps = 1/74 (1%) Frame = +2 Query: 89 EVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKD-QNGVSKGFGFVRFAERECAYIAKRQ 265 ++FVGGL E L ++FS G+I ++ ++KD + S+GFGFV F + A A Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66 Query: 266 KNGVELQGKRLAVD 307 NG + G+++ VD Sbjct: 67 MNGKSVDGRQIRVD 80
>CIRBP_MOUSE (P60824) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 49.7 bits (117), Expect = 4e-06 Identities = 27/74 (36%), Positives = 43/74 (58%), Gaps = 1/74 (1%) Frame = +2 Query: 89 EVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKD-QNGVSKGFGFVRFAERECAYIAKRQ 265 ++FVGGL E L ++FS G+I ++ ++KD + S+GFGFV F + A A Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66 Query: 266 KNGVELQGKRLAVD 307 NG + G+++ VD Sbjct: 67 MNGKSVDGRQIRVD 80
>CIRBP_CRIGR (P60826) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 49.7 bits (117), Expect = 4e-06 Identities = 27/74 (36%), Positives = 43/74 (58%), Gaps = 1/74 (1%) Frame = +2 Query: 89 EVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKD-QNGVSKGFGFVRFAERECAYIAKRQ 265 ++FVGGL E L ++FS G+I ++ ++KD + S+GFGFV F + A A Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66 Query: 266 KNGVELQGKRLAVD 307 NG + G+++ VD Sbjct: 67 MNGKSVDGRQIRVD 80
>RB27C_DROME (P48809) Heterogeneous nuclear ribonucleoprotein 27C (Hrb27-C)| (hnRNP 48) (HRP48.1) Length = 421 Score = 49.7 bits (117), Expect = 4e-06 Identities = 29/89 (32%), Positives = 51/89 (57%), Gaps = 1/89 (1%) Frame = +2 Query: 62 EQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQ-NGVSKGFGFVRFAER 238 ++ ++ G +VF+GGLP + TE LR F+ G++ ++ IM DQ S+GFGF+ F E Sbjct: 88 QKPKKGGGYKVFLGGLPSNVTETDLRTFFNRYGKVTEVVIMYDQEKKKSRGFGFLSF-EE 146 Query: 239 ECAYIAKRQKNGVELQGKRLAVDLSLDQD 325 E + + + L GK++ + + +D Sbjct: 147 ESSVEHVTNERYINLNGKQVEIKKAEPRD 175 Score = 46.2 bits (108), Expect = 4e-05 Identities = 26/59 (44%), Positives = 37/59 (62%), Gaps = 1/59 (1%) Frame = +2 Query: 62 EQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMK-DQNGVSKGFGFVRFAE 235 E+D R K +FVGGL T+ L F G+I+D +MK +++G S+GFGFV FA+ Sbjct: 2 EEDERGK---LFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFAD 57
>HNRPG_RAT (P84586) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) Length = 388 Score = 49.7 bits (117), Expect = 4e-06 Identities = 27/74 (36%), Positives = 38/74 (51%), Gaps = 1/74 (1%) Frame = +2 Query: 89 EVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKD-QNGVSKGFGFVRFAERECAYIAKRQ 265 ++F+GGL E L +F G IV++ +MKD + S+GF FV F A R Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKDVARD 68 Query: 266 KNGVELQGKRLAVD 307 NG L GK + V+ Sbjct: 69 MNGKSLDGKAIKVE 82
>SAP49_SCHPO (O14102) Spliceosome-associated protein 49| Length = 335 Score = 49.3 bits (116), Expect = 5e-06 Identities = 32/91 (35%), Positives = 46/91 (50%), Gaps = 4/91 (4%) Frame = +2 Query: 65 QDRRVK---GAEVFVGGLPRSATEGTLREIFSTCGEIVDL-RIMKDQNGVSKGFGFVRFA 232 QDR V GA +FVG L E L + FS G++V ++ +D+NG SKG+GFV + Sbjct: 89 QDRGVNTLIGANLFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDENGRSKGYGFVSYD 148 Query: 233 ERECAYIAKRQKNGVELQGKRLAVDLSLDQD 325 E A A N L K + V + ++ Sbjct: 149 SFETADAAIEAMNNQFLMNKPITVSYAFKRE 179
>SFPQ_MOUSE (Q8VIJ6) Splicing factor, proline- and glutamine-rich| (Polypyrimidine tract-binding protein-associated splicing factor) (PTB-associated splicing factor) (PSF) (DNA-binding p52/p100 complex, 100 kDa subunit) Length = 699 Score = 49.3 bits (116), Expect = 5e-06 Identities = 32/96 (33%), Positives = 47/96 (48%) Frame = +2 Query: 92 VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKRQKN 271 +FVG LP TE + +F+ GE ++ I K KGFGF++ R A IAK + + Sbjct: 291 LFVGNLPADITEDEFKRLFAKYGEPGEVFINK-----GKGFGFIKLESRALAEIAKAELD 345 Query: 272 GVELQGKRLAVDLSLDQDTLFFGNLCKEWSAEEFEE 379 ++G++L V + L NL S E EE Sbjct: 346 DTPMRGRQLRVRFATHAAALSVRNLSPYVSNELLEE 381
>SFPQ_HUMAN (P23246) Splicing factor, proline- and glutamine-rich| (Polypyrimidine tract-binding protein-associated splicing factor) (PTB-associated splicing factor) (PSF) (DNA-binding p52/p100 complex, 100 kDa subunit) (100-kDa DNA-pairing protein) (hPOMp Length = 707 Score = 49.3 bits (116), Expect = 5e-06 Identities = 32/96 (33%), Positives = 47/96 (48%) Frame = +2 Query: 92 VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKRQKN 271 +FVG LP TE + +F+ GE ++ I K KGFGF++ R A IAK + + Sbjct: 299 LFVGNLPADITEDEFKRLFAKYGEPGEVFINK-----GKGFGFIKLESRALAEIAKAELD 353 Query: 272 GVELQGKRLAVDLSLDQDTLFFGNLCKEWSAEEFEE 379 ++G++L V + L NL S E EE Sbjct: 354 DTPMRGRQLRVRFATHAAALSVRNLSPYVSNELLEE 389
>MRD1_NEUCR (Q7SG09) Multiple RNA-binding domain-containing protein 1| Length = 827 Score = 49.3 bits (116), Expect = 5e-06 Identities = 27/82 (32%), Positives = 43/82 (52%) Frame = +2 Query: 80 KGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAK 259 +G ++ V LP T+ +R +FS G++V LRI K N S+GF F F+ + A A Sbjct: 702 QGTKLVVKNLPFEVTKKEVRTLFSAYGKLVALRIPKKFNQSSRGFAFAEFSTAKEALNAF 761 Query: 260 RQKNGVELQGKRLAVDLSLDQD 325 + G+RL +D + +D Sbjct: 762 NSLKDTHILGRRLVIDFAQAED 783
>MRD1_KLULA (Q6CQR6) Multiple RNA-binding domain-containing protein 1| Length = 878 Score = 49.3 bits (116), Expect = 5e-06 Identities = 38/146 (26%), Positives = 71/146 (48%) Frame = +2 Query: 32 RRAASHGDYDEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKG 211 R+ S + + ++ ++ V LP AT + E+FS+ G++ +R+ K + ++G Sbjct: 734 RQGTSTTNASSKKKKKNQGKIIVKNLPFEATRKDVFELFSSFGQLKSVRVPKKFDKSARG 793 Query: 212 FGFVRFAERECAYIAKRQKNGVELQGKRLAVDLSLDQDTLFFGNLCKEWSAEEFEELIHK 391 F FV F + A A Q GV L G+RL ++ ++QD E ++ E++ K Sbjct: 794 FAFVEFLLPKEAENAMDQLQGVHLLGRRLVMEF-VEQD--------PEDVEQQIEKMTRK 844 Query: 392 TFKDVISVDLAMAPNLDSSTSKRRLN 469 K V + +A N + KR+++ Sbjct: 845 VKKQVNTTKIANMRN----SGKRKID 866 Score = 37.4 bits (85), Expect = 0.019 Identities = 28/102 (27%), Positives = 51/102 (50%), Gaps = 1/102 (0%) Frame = +2 Query: 2 RHEGEEPKMDRRAASHGDYDEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRI 181 + + EE +++ S + + R G +F+ + +ATE R++FS GE+ ++ I Sbjct: 303 QQQPEETEVETSQESEEEKSLKKIRETG-RLFLRNILYTATEDDFRKLFSPYGELEEVHI 361 Query: 182 MKD-QNGVSKGFGFVRFAERECAYIAKRQKNGVELQGKRLAV 304 D + G SKGF +V F + A A + + QG+ L + Sbjct: 362 AVDTRTGQSKGFAYVLFKNADNAATAFVELDKQIFQGRLLHI 403 Score = 33.9 bits (76), Expect = 0.22 Identities = 21/87 (24%), Positives = 40/87 (45%), Gaps = 11/87 (12%) Frame = +2 Query: 86 AEVFVGGLPRSATEGTLREIFS-----------TCGEIVDLRIMKDQNGVSKGFGFVRFA 232 + V V GLP E LR++ + D+++MK+++G S+ F F+ F Sbjct: 2 SRVIVKGLPIYLKEDRLRDLIEKRLTQKHQSTDVQSYLSDVKLMKNRDGESRRFAFIGFR 61 Query: 233 ERECAYIAKRQKNGVELQGKRLAVDLS 313 + E A+ NG + ++ V ++ Sbjct: 62 DEEDAFDCVNYFNGTFVDTSKIEVSMA 88
>ELAV1_MOUSE (P70372) ELAV-like protein 1 (Hu-antigen R) (HuR) (Elav-like| generic protein) (MelG) Length = 326 Score = 49.3 bits (116), Expect = 5e-06 Identities = 21/55 (38%), Positives = 38/55 (69%), Gaps = 1/55 (1%) Frame = +2 Query: 77 VKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQN-GVSKGFGFVRFAER 238 +K A +++ GLPR+ T+ + ++FS G I++ R++ DQ G+S+G F+RF +R Sbjct: 103 IKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKR 157 Score = 46.6 bits (109), Expect = 3e-05 Identities = 31/127 (24%), Positives = 63/127 (49%), Gaps = 9/127 (7%) Frame = +2 Query: 38 AASHGDYDEQDRR--VKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQ-NGVSK 208 + + D+ +D R + + V LP++ T+ LR +FS+ GE+ ++++D+ G S Sbjct: 2 SGGYEDHMAEDCRGDIGRTNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSL 61 Query: 209 GFGFVRFAERECAYIAKRQKNGVELQGKRLAVDLS------LDQDTLFFGNLCKEWSAEE 370 G+GFV + + A A NG+ LQ K + V + + L+ L + + ++ Sbjct: 62 GYGFVNYVTAKDAERAISTLNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRTMTQKD 121 Query: 371 FEELIHK 391 E++ + Sbjct: 122 VEDMFSR 128 Score = 41.2 bits (95), Expect = 0.001 Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 1/78 (1%) Frame = +2 Query: 92 VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQN-GVSKGFGFVRFAERECAYIAKRQK 268 +F+ L + A EG L ++F G + ++++++D N KGFGFV E + +A Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEESAMAIASL 305 Query: 269 NGVELQGKRLAVDLSLDQ 322 NG L K L V ++ Sbjct: 306 NGYRLGDKILQVSFKTNK 323
>RB87F_DROME (P48810) Heterogeneous nuclear ribonucleoprotein 87F (HRP36.1| protein) (Protein P11) Length = 385 Score = 49.3 bits (116), Expect = 5e-06 Identities = 44/155 (28%), Positives = 74/155 (47%), Gaps = 15/155 (9%) Frame = +2 Query: 44 SHGDYDEQDRRVKGAEV---FVGGLPRSATEGTLREIFSTCGEIVDLRIMKD-QNGVSKG 211 S+G+YD+ + + ++ F+GGL T+ L+ F G IVD+ +MKD + S+G Sbjct: 7 SNGNYDDGEEITEPEQLRKLFIGGLDYRTTDDGLKAHFEKWGNIVDVVVMKDPKTKRSRG 66 Query: 212 FGFVRFAER---ECAYIAKRQK-NGVELQGKRLAVDLSLDQDT-------LFFGNLCKEW 358 FGF+ +++ + A A+ K +G ++ KR +D LF G L + Sbjct: 67 FGFITYSQSYMIDNAQNARPHKIDGRTVEPKRAVPRQEIDSPNAGATVKKLFVGGLRDDH 126 Query: 359 SAEEFEELIHKTFKDVISVDLAMAPNLDSSTSKRR 463 E E K F ++SV++ D T K+R Sbjct: 127 DEECLREYF-KDFGQIVSVNIVS----DKDTGKKR 156 Score = 42.4 bits (98), Expect = 6e-04 Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 1/72 (1%) Frame = +2 Query: 17 EPKMDRRAASHGDYDEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQN 196 EPK RA + D + ++FVGGL E LRE F G+IV + I+ D++ Sbjct: 95 EPK---RAVPRQEIDSPNAGATVKKLFVGGLRDDHDEECLREYFKDFGQIVSVNIVSDKD 151 Query: 197 -GVSKGFGFVRF 229 G +GF F+ F Sbjct: 152 TGKKRGFAFIEF 163
>ROAA_MOUSE (Q99020) Heterogeneous nuclear ribonucleoprotein A/B (hnRNP A/B)| (CArG-binding factor-A) (CBF-A) Length = 285 Score = 48.9 bits (115), Expect = 6e-06 Identities = 37/146 (25%), Positives = 65/146 (44%), Gaps = 5/146 (3%) Frame = +2 Query: 20 PKMDRRAASHGDYDEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQN- 196 P ++ A + ++FVGGL ++ L++ F+ GE+VD I D N Sbjct: 53 PSGNQNGAEGDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNT 112 Query: 197 GVSKGFGFVRFAERECAYIAKRQK----NGVELQGKRLAVDLSLDQDTLFFGNLCKEWSA 364 G S+GFGF+ F + QK +G + K+ +F G L E + Sbjct: 113 GRSRGFGFILFKDSSSVEKVLDQKEHRLDGRVIDPKKAMAMKKDPVKKIFVGGLNPEATE 172 Query: 365 EEFEELIHKTFKDVISVDLAMAPNLD 442 E+ E + F ++ +++L + P L+ Sbjct: 173 EKIREYFGQ-FGEIEAIELPIDPKLN 197
>NUCL_CHICK (P15771) Nucleolin (Protein C23)| Length = 694 Score = 48.9 bits (115), Expect = 6e-06 Identities = 32/91 (35%), Positives = 48/91 (52%), Gaps = 1/91 (1%) Frame = +2 Query: 44 SHGDYDEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQN-GVSKGFGF 220 + G +++Q + + FV GL TE TLRE F + RI+ D++ G SKGFGF Sbjct: 544 ARGGFNQQSKTL-----FVRGLSEDTTEETLRESFEGS---ISARIVTDRDTGSSKGFGF 595 Query: 221 VRFAERECAYIAKRQKNGVELQGKRLAVDLS 313 V F+ E A AK E+ G ++ +D + Sbjct: 596 VDFSSPEDAKAAKEAMEDGEIDGNKVTLDFA 626
>GBP2_YEAST (P25555) Single-strand telomeric DNA-binding protein GBP2| (G-strand-binding protein 2) (RAP1 localization factor 6) Length = 427 Score = 48.9 bits (115), Expect = 6e-06 Identities = 30/101 (29%), Positives = 50/101 (49%) Frame = +2 Query: 2 RHEGEEPKMDRRAASHGDYDEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRI 181 R + P+ + + +E D G EVF+ LP S +L+++F CG ++ + Sbjct: 194 RQDNPPPEAAKEFSKKATREEIDN---GFEVFIINLPYSMNWQSLKDMFKECGHVLRADV 250 Query: 182 MKDQNGVSKGFGFVRFAERECAYIAKRQKNGVELQGKRLAV 304 D NG S+GFG V + + A NG+E++G+ L V Sbjct: 251 ELDFNGFSRGFGSVIYPTEDEMIRAIDTFNGMEVEGRVLEV 291 Score = 36.2 bits (82), Expect = 0.043 Identities = 22/71 (30%), Positives = 35/71 (49%) Frame = +2 Query: 92 VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKRQKN 271 +FV L T L+E+F T GE+V+ I+ + G +G G V F + E A + + Sbjct: 124 IFVRNLTFDCTPEDLKELFGTVGEVVEADIITSK-GHHRGMGTVEFTKNESVQDAISKFD 182 Query: 272 GVELQGKRLAV 304 G ++L V Sbjct: 183 GALFMDRKLMV 193
>GRP7_ARATH (Q03250) Glycine-rich RNA-binding protein 7| Length = 176 Score = 48.9 bits (115), Expect = 6e-06 Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 1/72 (1%) Frame = +2 Query: 95 FVGGLPRSATEGTLREIFSTCGEIVDLRIMKD-QNGVSKGFGFVRFAERECAYIAKRQKN 271 FVGGL + + L F+ G+++D +I+ D + G S+GFGFV F + + A N Sbjct: 11 FVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMN 70 Query: 272 GVELQGKRLAVD 307 G +L G+ + V+ Sbjct: 71 GQDLDGRSITVN 82
>DAZL_MACFA (Q95192) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted| in azoospermia-like 1) Length = 295 Score = 48.9 bits (115), Expect = 6e-06 Identities = 30/98 (30%), Positives = 52/98 (53%) Frame = +2 Query: 38 AASHGDYDEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFG 217 AAS G Y + ++ VFVGG+ E +R F+ G + +++I+ D+ GVSKG+G Sbjct: 25 AASQG-YVLPEGKIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYG 83 Query: 218 FVRFAERECAYIAKRQKNGVELQGKRLAVDLSLDQDTL 331 FV F + K ++ + GK+L + ++ + L Sbjct: 84 FVSFFND--VDVQKIVESQINFHGKKLKLGPAIRKQNL 119
>GAR2_SCHPO (P41891) Protein gar2| Length = 500 Score = 48.9 bits (115), Expect = 6e-06 Identities = 35/101 (34%), Positives = 50/101 (49%), Gaps = 1/101 (0%) Frame = +2 Query: 2 RHEGEEPKMDRRAASHGDYDEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRI 181 R +P +RA + GD + VFVG L +ATE L F CG+I +R+ Sbjct: 342 RPANPQPYAQQRAGNFGDQLSEPSDT----VFVGNLSFNATEDDLSTAFGGCGDIQSIRL 397 Query: 182 MKD-QNGVSKGFGFVRFAERECAYIAKRQKNGVELQGKRLA 301 D Q+G KGFG+V F++ + A K VE+ G +A Sbjct: 398 PTDPQSGRLKGFGYVTFSDIDSA------KKCVEMNGHFIA 432 Score = 44.3 bits (103), Expect = 2e-04 Identities = 28/75 (37%), Positives = 40/75 (53%), Gaps = 1/75 (1%) Frame = +2 Query: 92 VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKD-QNGVSKGFGFVRFAERECAYIAKRQK 268 VFVG L + + L + F G IV R++ D Q+G SKG+G+V F E A A Sbjct: 265 VFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAAN 324 Query: 269 NGVELQGKRLAVDLS 313 E+ G+ + +DLS Sbjct: 325 GTKEIDGRMVNLDLS 339
>NUCL_XENLA (P20397) Nucleolin (Protein C23)| Length = 650 Score = 48.9 bits (115), Expect = 6e-06 Identities = 30/75 (40%), Positives = 42/75 (56%), Gaps = 1/75 (1%) Frame = +2 Query: 92 VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQN-GVSKGFGFVRFAERECAYIAKRQK 268 +FV GL TE TL+E F V+ RI+ D++ G SKGFGFV F+ E A AK Sbjct: 504 LFVRGLSEDTTEETLKEAFDGS---VNARIVTDRDTGASKGFGFVDFSTAEDAKAAKEAM 560 Query: 269 NGVELQGKRLAVDLS 313 E+ G ++ +D + Sbjct: 561 EDGEIDGNKVTLDFA 575 Score = 48.9 bits (115), Expect = 6e-06 Identities = 29/102 (28%), Positives = 55/102 (53%), Gaps = 1/102 (0%) Frame = +2 Query: 11 GEEPKMDRRAASHGDYDEQDRRVKGAE-VFVGGLPRSATEGTLREIFSTCGEIVDLRIMK 187 G E K+++ A + ++++ + + +FV +P S T L+EIF D+RI Sbjct: 298 GTEVKIEKAMAFDKNKTAENKKERDSRTLFVKNIPYSTTVEELQEIFENAK---DIRIPT 354 Query: 188 DQNGVSKGFGFVRFAERECAYIAKRQKNGVELQGKRLAVDLS 313 ++G +KG +V F+ + A A +K G E++G+ + VD + Sbjct: 355 GKDGSNKGIAYVEFSNEDEANKALEEKQGAEIEGRSIFVDFT 396 Score = 45.1 bits (105), Expect = 9e-05 Identities = 41/154 (26%), Positives = 67/154 (43%), Gaps = 18/154 (11%) Frame = +2 Query: 50 GDYDEQDRRVKGAE-----VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGF 214 G+ + KG E + V L SATE +LRE+F + +RI ++Q G +KGF Sbjct: 397 GEKSQNSGNKKGPEGDSKVLVVNNLSYSATEDSLREVFE---KATSIRIPQNQ-GRAKGF 452 Query: 215 GFVRFAERECAYIAKRQKNGVELQGKRLAVDL-------------SLDQDTLFFGNLCKE 355 F+ F+ E A A N E++G+ + ++ S TLF L ++ Sbjct: 453 AFIEFSSAEDAKDAMDSCNNTEIEGRSIRLEFSQGGGPQGGGRGGSAQSKTLFVRGLSED 512 Query: 356 WSAEEFEELIHKTFKDVISVDLAMAPNLDSSTSK 457 + E +E SV+ + + D+ SK Sbjct: 513 TTEETLKEAFDG------SVNARIVTDRDTGASK 540
>MRD1_CANGA (Q6FXP4) Multiple RNA-binding domain-containing protein 1| Length = 861 Score = 48.9 bits (115), Expect = 6e-06 Identities = 28/94 (29%), Positives = 50/94 (53%) Frame = +2 Query: 23 KMDRRAASHGDYDEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGV 202 K+ R + G ++ ++ K ++ V LP AT + E+F++ G++ +R+ K + Sbjct: 719 KLSHRQGNAGS--QEKKKAKNGKIIVKNLPFEATRKDVFELFNSFGQLKSVRVPKKFDKS 776 Query: 203 SKGFGFVRFAERECAYIAKRQKNGVELQGKRLAV 304 ++GF FV F + A A Q GV L G+RL + Sbjct: 777 ARGFAFVEFVLPKEAENAMDQLQGVHLLGRRLVM 810 Score = 38.5 bits (88), Expect = 0.009 Identities = 24/76 (31%), Positives = 42/76 (55%), Gaps = 1/76 (1%) Frame = +2 Query: 80 KGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKD-QNGVSKGFGFVRFAERECAYIA 256 K +F+ + S+TE +++FS GE+ ++ + D + G SKGF +V FA+ E A A Sbjct: 323 KTGRLFLRNILYSSTEDDFKKLFSPYGELKEVHVAVDTRTGNSKGFAYVLFAKPEEAVQA 382 Query: 257 KRQKNGVELQGKRLAV 304 + + QG+ L + Sbjct: 383 YIELDKQIFQGRLLHI 398 Score = 36.2 bits (82), Expect = 0.043 Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 11/87 (12%) Frame = +2 Query: 86 AEVFVGGLPRSATEGTLREIFS-----------TCGEIVDLRIMKDQNGVSKGFGFVRFA 232 + V V GLP TE L++ F+ G I DLRI+K++ G S+ F F+ + Sbjct: 2 SRVIVKGLPIYLTEPELQKHFNKRLITTHATSNVDGLITDLRILKNREGKSRRFAFIGYK 61 Query: 233 ERECAYIAKRQKNGVELQGKRLAVDLS 313 + A A +G + ++ VD++ Sbjct: 62 NEQDALDAVNYFDGSFIYTSKIEVDMA 88
>ROC4_NICSY (P19683) 31 kDa ribonucleoprotein, chloroplast precursor| Length = 315 Score = 48.5 bits (114), Expect = 8e-06 Identities = 29/99 (29%), Positives = 52/99 (52%), Gaps = 3/99 (3%) Frame = +2 Query: 35 RAASHGDYDEQDRRV--KGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKD-QNGVS 205 +AA G+ E+ R + ++VG +P + L ++FS G++V R++ D + G S Sbjct: 211 KAARRGERPERPPRTFEQSYRIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRS 270 Query: 206 KGFGFVRFAERECAYIAKRQKNGVELQGKRLAVDLSLDQ 322 +GFGFV A A +G L G+ + V+++ D+ Sbjct: 271 RGFGFVTMASEAEMSDAIANLDGQSLDGRTIRVNVAEDR 309 Score = 35.8 bits (81), Expect = 0.057 Identities = 32/113 (28%), Positives = 49/113 (43%), Gaps = 14/113 (12%) Frame = +2 Query: 11 GEEPKMDRRAASHGDYDEQDR------------RVKGAEVFVGGLPRSATEGTLREIFST 154 GEE + + + GD E D + A++FVG LP L +F Sbjct: 99 GEETEEEGFVEAVGDAGESDEVEADEEEEEFQEPPEDAKLFVGNLPYDVDSEGLARLFEQ 158 Query: 155 CG--EIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKRQKNGVELQGKRLAVD 307 G EI ++ +D + S+GFGFV + E A A N ++ G+ L V+ Sbjct: 159 AGVVEIAEVIYNRDTDQ-SRGFGFVTMSTVEEAEKAVEMYNRYDVNGRLLTVN 210
>CTF1_SCHPO (O43040) Cleavage and termination factor 1 (Transcription| termination factor ctf1) Length = 363 Score = 48.5 bits (114), Expect = 8e-06 Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 1/76 (1%) Frame = +2 Query: 83 GAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKD-QNGVSKGFGFVRFAERECAYIAK 259 G VFVG +P +E + EIF+ G + +++ D + G KG+GF F + E +A Sbjct: 6 GNVVFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAMAV 65 Query: 260 RQKNGVELQGKRLAVD 307 R+ N EL +++ V+ Sbjct: 66 RKLNNSELGPRKIRVE 81
>RBM5_HUMAN (P52756) RNA-binding protein 5 (RNA-binding motif protein 5)| (Putative tumor suppressor LUCA15) (G15 protein) (NY-REN-9 antigen) Length = 815 Score = 48.5 bits (114), Expect = 8e-06 Identities = 35/100 (35%), Positives = 53/100 (53%), Gaps = 10/100 (10%) Frame = +2 Query: 44 SHGDYDEQDRRV------KGAEVFVGGLPRSATEGTLREIFSTCG--EIVDLRIMKDQNG 199 S GDY E D R + + + GLP + TE +RE+ + + D+R+MK + G Sbjct: 78 SDGDYGEHDYRHDISDERESKTIMLRGLPITITESDIREMMESFEGPQPADVRLMKRKTG 137 Query: 200 VSKGFGFVRFAERECA--YIAKRQKNGVELQGKRLAVDLS 313 VS+GF FV F + A ++ QK V +QGK +A+ S Sbjct: 138 VSRGFAFVEFYHLQDATSWMEANQKKLV-IQGKHIAMHYS 176
>RBM7_HUMAN (Q9Y580) RNA-binding protein 7 (RNA-binding motif protein 7)| Length = 266 Score = 48.5 bits (114), Expect = 8e-06 Identities = 24/71 (33%), Positives = 37/71 (52%) Frame = +2 Query: 92 VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKRQKN 271 +FVG L TE L E+F G ++ ++I KD++G K F FV F A N Sbjct: 12 LFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEVSVPYAMNLLN 71 Query: 272 GVELQGKRLAV 304 G++L G+ + + Sbjct: 72 GIKLYGRPIKI 82
>ELAV_DROME (P16914) Protein elav (Embryonic lethal abnormal visual protein)| Length = 483 Score = 48.5 bits (114), Expect = 8e-06 Identities = 27/68 (39%), Positives = 42/68 (61%), Gaps = 2/68 (2%) Frame = +2 Query: 77 VKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKD--QNGVSKGFGFVRFAERECAY 250 +KGA ++V GLP++ T+ L IF+ G I+ RI+++ + +KG GF+RF +RE A Sbjct: 245 IKGANLYVSGLPKTMTQQELEAIFAPFGAIITSRILQNAGNDTQTKGVGFIRFDKREEAT 304 Query: 251 IAKRQKNG 274 A NG Sbjct: 305 RAIIALNG 312 Score = 47.0 bits (110), Expect = 2e-05 Identities = 34/142 (23%), Positives = 60/142 (42%), Gaps = 20/142 (14%) Frame = +2 Query: 17 EPKMDRRAASHGDYDEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQN 196 +P + A S + V LP++ TE +R +FS+ GEI +++++D++ Sbjct: 126 QPNTNGNAGSGSQNGSNGSTETRTNLIVNYLPQTMTEDEIRSLFSSVGEIESVKLIRDKS 185 Query: 197 --------------GVSKGFGFVRFAERECAYIAKRQKNGVELQGKRLAVDL------SL 316 G S G+GFV + + A A NG+ LQ K + V ++ Sbjct: 186 QVYIDPLNPQAPSKGQSLGYGFVNYVRPQDAEQAVNVLNGLRLQNKTIKVSFARPSSDAI 245 Query: 317 DQDTLFFGNLCKEWSAEEFEEL 382 L+ L K + +E E + Sbjct: 246 KGANLYVSGLPKTMTQQELEAI 267 Score = 35.0 bits (79), Expect = 0.097 Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 1/78 (1%) Frame = +2 Query: 92 VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQN-GVSKGFGFVRFAERECAYIAKRQK 268 +F+ L E L ++F G + ++I+KD KG+GFV + A +A R Sbjct: 404 IFIYNLAPETEEAALWQLFGPFGAVQSVKIVKDPTTNQCKGYGFVSMTNYDEAAMAIRAL 463 Query: 269 NGVELQGKRLAVDLSLDQ 322 NG + + L V ++ Sbjct: 464 NGYTMGNRVLQVSFKTNK 481
>DAZL_HUMAN (Q92904) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted| in azoospermia-like 1) (DAZ homolog) (SPGY-like-autosomal) Length = 295 Score = 48.5 bits (114), Expect = 8e-06 Identities = 28/98 (28%), Positives = 51/98 (52%) Frame = +2 Query: 38 AASHGDYDEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFG 217 AA+ Y + ++ VFVGG+ E +R F+ G + +++I+ D+ GVSKG+G Sbjct: 24 AATSQGYILPEGKIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYG 83 Query: 218 FVRFAERECAYIAKRQKNGVELQGKRLAVDLSLDQDTL 331 FV F + K ++ + GK+L + ++ + L Sbjct: 84 FVSFFND--VDVQKIVESQINFHGKKLKLGPAIRKQNL 119
>HNRPG_MOUSE (O35479) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) Length = 388 Score = 48.5 bits (114), Expect = 8e-06 Identities = 27/74 (36%), Positives = 38/74 (51%), Gaps = 1/74 (1%) Frame = +2 Query: 89 EVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKD-QNGVSKGFGFVRFAERECAYIAKRQ 265 ++F+GGL E L +F G IV++ +MKD + S+GF FV A A R Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEIILMKDRETNKSRGFAFVTLESPADAKDAARD 68 Query: 266 KNGVELQGKRLAVD 307 NG L GK + V+ Sbjct: 69 MNGKSLDGKAIKVE 82
>FCA_ARATH (O04425) Flowering time control protein FCA| Length = 747 Score = 48.5 bits (114), Expect = 8e-06 Identities = 24/62 (38%), Positives = 38/62 (61%) Frame = +2 Query: 89 EVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKRQK 268 ++FVG L + ATE + EIF G + D+ +M+D+ S+G GFV+++ +E A A Sbjct: 212 KLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYRQSRGCGFVKYSSKETAMAAIDGL 271 Query: 269 NG 274 NG Sbjct: 272 NG 273 Score = 45.1 bits (105), Expect = 9e-05 Identities = 37/128 (28%), Positives = 63/128 (49%), Gaps = 14/128 (10%) Frame = +2 Query: 41 ASHGDYDEQD--RRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKD-QNGVSKG 211 + HG + D R ++FVG +PR+ATE +R F G ++++ ++KD + G +G Sbjct: 103 SDHGSFTGTDVSDRSSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQG 162 Query: 212 FGFVRFAERECAYIAKRQ-KNGVELQGKRLAVD----------LSLDQDTLFFGNLCKEW 358 FV++A + A A R N + L G V + + LF G+L K+ Sbjct: 163 CCFVKYATSKDADRAIRALHNQITLPGGTGPVQVRYADGERERIGTLEFKLFVGSLNKQA 222 Query: 359 SAEEFEEL 382 + +E EE+ Sbjct: 223 TEKEVEEI 230
>ELAV_DROVI (P23241) Protein elav (Embryonic lethal abnormal visual protein)| Length = 519 Score = 48.5 bits (114), Expect = 8e-06 Identities = 27/68 (39%), Positives = 42/68 (61%), Gaps = 2/68 (2%) Frame = +2 Query: 77 VKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKD--QNGVSKGFGFVRFAERECAY 250 +KGA ++V GLP++ T+ L IF+ G I+ RI+++ + +KG GF+RF +RE A Sbjct: 281 IKGANLYVSGLPKTMTQQELEAIFAPFGAIITSRILQNAGNDTQTKGVGFIRFDKREEAT 340 Query: 251 IAKRQKNG 274 A NG Sbjct: 341 RAIIALNG 348 Score = 46.2 bits (108), Expect = 4e-05 Identities = 31/117 (26%), Positives = 55/117 (47%), Gaps = 20/117 (17%) Frame = +2 Query: 92 VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQN--------------GVSKGFGFVRF 229 + V LP++ TE +R +FS+ GEI +++++D++ G S G+GFV + Sbjct: 187 LIVNYLPQTMTEDEIRSLFSSVGEIESVKLIRDKSQVYIDPLNPQAPSKGQSLGYGFVNY 246 Query: 230 AERECAYIAKRQKNGVELQGKRLAVDL------SLDQDTLFFGNLCKEWSAEEFEEL 382 + A A NG+ LQ K + V ++ L+ L K + +E E + Sbjct: 247 VRPQDAEQAVNVLNGLRLQNKTIKVSFARPSSDAIKGANLYVSGLPKTMTQQELEAI 303 Score = 35.0 bits (79), Expect = 0.097 Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 1/78 (1%) Frame = +2 Query: 92 VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQN-GVSKGFGFVRFAERECAYIAKRQK 268 +F+ L E L ++F G + ++I+KD KG+GFV + A +A R Sbjct: 440 IFIYNLAPETEEAALWQLFGPFGAVQSVKIVKDPTTNQCKGYGFVSMTNYDEAAMAIRAL 499 Query: 269 NGVELQGKRLAVDLSLDQ 322 NG + + L V ++ Sbjct: 500 NGYTMGNRVLQVSFKTNK 517
>ROC5_NICSY (P19684) 33 kDa ribonucleoprotein, chloroplast precursor| Length = 324 Score = 48.1 bits (113), Expect = 1e-05 Identities = 32/106 (30%), Positives = 55/106 (51%), Gaps = 6/106 (5%) Frame = +2 Query: 8 EGEEPKMDRRAASHGDYDEQDRRVK-----GAEVFVGGLPRSATEGTLREIFSTCGEIVD 172 E +E ++ A + +E++ RV+ G ++VG LP S T L EIF+ G + + Sbjct: 83 EDDEEEVALSAEEEEEIEEKEERVESESVEGGRLYVGNLPFSMTSSQLSEIFAEAGTVAN 142 Query: 173 LRIMKDQ-NGVSKGFGFVRFAERECAYIAKRQKNGVELQGKRLAVD 307 + I+ D+ S+GF FV E A A R +G ++ G+ + V+ Sbjct: 143 VEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRLFDGSQVGGRTVKVN 188 Score = 39.3 bits (90), Expect = 0.005 Identities = 22/76 (28%), Positives = 43/76 (56%), Gaps = 1/76 (1%) Frame = +2 Query: 89 EVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQN-GVSKGFGFVRFAERECAYIAKRQ 265 +++V L + T LR+ F+ + +++ D++ G S+GFGF+ F+ E A Sbjct: 218 KLYVANLSWALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNSALDT 277 Query: 266 KNGVELQGKRLAVDLS 313 N VEL+G+ L ++++ Sbjct: 278 MNEVELEGRPLRLNVA 293
>ROA1_CAEEL (Q22037) Heterogeneous nuclear ribonucleoprotein A1| Length = 346 Score = 48.1 bits (113), Expect = 1e-05 Identities = 27/80 (33%), Positives = 47/80 (58%), Gaps = 1/80 (1%) Frame = +2 Query: 89 EVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGV-SKGFGFVRFAERECAYIAKRQ 265 ++FVGGL + T+ +RE +S GEI D+ +M+D S+GFGFV F+ + A +Q Sbjct: 24 KIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMKQ 83 Query: 266 KNGVELQGKRLAVDLSLDQD 325 + + + GK + ++ +D Sbjct: 84 RPHI-IDGKTVDPKRAVPRD 102
>CUGB1_MOUSE (P28659) CUG triplet repeat RNA-binding protein 1 (CUG-BP1)| (RNA-binding protein BRUNOL-2) (Deadenylation factor CUG-BP) (Deadenylation factor EDEN-BP) (Brain protein F41) Length = 486 Score = 48.1 bits (113), Expect = 1e-05 Identities = 22/65 (33%), Positives = 40/65 (61%) Frame = +2 Query: 62 EQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERE 241 E++ V+ ++F+G + + TE +R +FS+ G+I + RI++ +G+S+G FV F R Sbjct: 100 EKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRT 159 Query: 242 CAYIA 256 A A Sbjct: 160 MAQTA 164 Score = 44.3 bits (103), Expect = 2e-04 Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 1/90 (1%) Frame = +2 Query: 44 SHGDYDEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKD-QNGVSKGFGF 220 S G Q +GA +F+ LP+ + L ++F G +V ++ D Q +SK FGF Sbjct: 387 SIGAAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGF 446 Query: 221 VRFAERECAYIAKRQKNGVELQGKRLAVDL 310 V + A A + NG ++ KRL V L Sbjct: 447 VSYDNPVSAQAAIQSMNGFQIGMKRLKVQL 476 Score = 40.8 bits (94), Expect = 0.002 Identities = 25/83 (30%), Positives = 47/83 (56%), Gaps = 4/83 (4%) Frame = +2 Query: 47 HGDYDEQDRR-VKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQN---GVSKGF 214 +G D D+ + ++FVG +PR+ +E LRE+F G + ++ I++D++ SKG Sbjct: 2 NGTLDHPDQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINILRDRSQNPPQSKGC 61 Query: 215 GFVRFAERECAYIAKRQKNGVEL 283 FV F R+ A A+ + +++ Sbjct: 62 CFVTFYTRKAALEAQNALHNMKV 84
>CUGB1_HUMAN (Q92879) CUG triplet repeat RNA-binding protein 1 (CUG-BP1)| (RNA-binding protein BRUNOL-2) (Deadenylation factor CUG-BP) (50 kDa Nuclear polyadenylated RNA-binding protein) (EDEN-BP) Length = 486 Score = 48.1 bits (113), Expect = 1e-05 Identities = 22/65 (33%), Positives = 40/65 (61%) Frame = +2 Query: 62 EQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERE 241 E++ V+ ++F+G + + TE +R +FS+ G+I + RI++ +G+S+G FV F R Sbjct: 100 EKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRA 159 Query: 242 CAYIA 256 A A Sbjct: 160 MAQTA 164 Score = 44.3 bits (103), Expect = 2e-04 Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 1/90 (1%) Frame = +2 Query: 44 SHGDYDEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKD-QNGVSKGFGF 220 S G Q +GA +F+ LP+ + L ++F G +V ++ D Q +SK FGF Sbjct: 387 SIGAAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGF 446 Query: 221 VRFAERECAYIAKRQKNGVELQGKRLAVDL 310 V + A A + NG ++ KRL V L Sbjct: 447 VSYDNPVSAQAAIQSMNGFQIGMKRLKVQL 476 Score = 40.4 bits (93), Expect = 0.002 Identities = 24/83 (28%), Positives = 47/83 (56%), Gaps = 4/83 (4%) Frame = +2 Query: 47 HGDYDEQDRR-VKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQN---GVSKGF 214 +G D D+ + ++FVG +PR+ +E LRE+F G + ++ +++D++ SKG Sbjct: 2 NGTLDHPDQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGC 61 Query: 215 GFVRFAERECAYIAKRQKNGVEL 283 FV F R+ A A+ + +++ Sbjct: 62 CFVTFYTRKAALEAQNALHNMKV 84
>NUCL_MESAU (P08199) Nucleolin (Protein C23)| Length = 713 Score = 48.1 bits (113), Expect = 1e-05 Identities = 36/148 (24%), Positives = 68/148 (45%), Gaps = 10/148 (6%) Frame = +2 Query: 5 HEGEEPKMDRRAASHGDYDEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIM 184 + GE+ + R + + + + + + L SATE TL+E+F + +++ Sbjct: 463 YTGEKGQRQERTGKNSTWSGESKTL-----VLSNLSYSATEETLQEVFE---KATFIKVP 514 Query: 185 KDQNGVSKGFGFVRFAERECAYIAKRQKNGVELQGKRLAVDL----------SLDQDTLF 334 ++Q G SKG+ F+ FA E A A N +E++G+ + ++L S TLF Sbjct: 515 QNQQGKSKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRLELQGPRGSPNARSQPSKTLF 574 Query: 335 FGNLCKEWSAEEFEELIHKTFKDVISVD 418 L ++ + E +E + + I D Sbjct: 575 VKGLSEDTTEETLKESFEGSVRARIVTD 602 Score = 45.8 bits (107), Expect = 5e-05 Identities = 30/73 (41%), Positives = 38/73 (52%), Gaps = 1/73 (1%) Frame = +2 Query: 92 VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKD-QNGVSKGFGFVRFAERECAYIAKRQK 268 +FV GL TE TL+E F V RI+ D + G SKGFGFV F E A AK Sbjct: 573 LFVKGLSEDTTEETLKESFEGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAM 629 Query: 269 NGVELQGKRLAVD 307 E+ G ++ +D Sbjct: 630 EDGEIDGNKVTLD 642 Score = 33.9 bits (76), Expect = 0.22 Identities = 20/79 (25%), Positives = 42/79 (53%), Gaps = 1/79 (1%) Frame = +2 Query: 71 RRVKGAEVFVG-GLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECA 247 ++V+ A + L + TE L+E+F + +++R++ Q+G SKG ++ F A Sbjct: 387 KKVRAARTLLAKNLSFNITEDELKEVFE---DALEIRLVS-QDGKSKGIAYIEFKSEADA 442 Query: 248 YIAKRQKNGVELQGKRLAV 304 +K G E+ G+ +++ Sbjct: 443 EKNLEEKQGAEIDGRSVSL 461
>TRA2_DROME (P19018) Transformer-2 sex-determining protein| Length = 264 Score = 48.1 bits (113), Expect = 1e-05 Identities = 34/115 (29%), Positives = 58/115 (50%), Gaps = 8/115 (6%) Frame = +2 Query: 2 RHEGEEPKMDRRAASHGDYDEQDRRVKGAE-------VFVGGLPRSATEGTLREIFSTCG 160 R E P + R S +++R K E + V GL + ++ +RE+F+ G Sbjct: 62 RSSSESPPPEPRHRSGRSSRDRERMHKSREHPQASRCIGVFGLNTNTSQHKVRELFNKYG 121 Query: 161 EIVDLRIMKD-QNGVSKGFGFVRFAERECAYIAKRQKNGVELQGKRLAVDLSLDQ 322 I ++++ D Q S+GF F+ F + A AK +G+E+ G+R+ VD S+ Q Sbjct: 122 PIERIQMVIDAQTQRSRGFCFIYFEKLSDARAAKDSCSGIEVDGRRIRVDFSITQ 176
>SXL_CERCA (O61374) Sex-lethal homolog (CCSXL)| Length = 348 Score = 48.1 bits (113), Expect = 1e-05 Identities = 33/110 (30%), Positives = 53/110 (48%), Gaps = 7/110 (6%) Frame = +2 Query: 83 GAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKD-QNGVSKGFGFVRFAERECAYIAK 259 G + V LP+ T+ L +F T G I RIM+D + G S G+ FV FA + A Sbjct: 109 GTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFAAETDSQRAI 168 Query: 260 RQKNGVELQGKRLAVDL------SLDQDTLFFGNLCKEWSAEEFEELIHK 391 + NG+ ++ KRL V S+ L+ NL + + ++ + + K Sbjct: 169 KSLNGITVRNKRLKVSYARPGGESIKDTNLYVTNLPRTITDDQLDTIFGK 218
>RBM7_BOVIN (Q3MHY8) RNA-binding protein 7 (RNA-binding motif protein 7)| Length = 262 Score = 47.8 bits (112), Expect = 1e-05 Identities = 24/71 (33%), Positives = 37/71 (52%) Frame = +2 Query: 92 VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKRQKN 271 +FVG L TE L E+F G ++ ++I KD++G K F FV F A N Sbjct: 12 LFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEVSVPYAMNLLN 71 Query: 272 GVELQGKRLAV 304 G++L G+ + + Sbjct: 72 GIKLFGRPIKI 82
>SGN1_YEAST (P40561) RNA-binding protein SGN1| Length = 250 Score = 47.8 bits (112), Expect = 1e-05 Identities = 32/90 (35%), Positives = 47/90 (52%), Gaps = 4/90 (4%) Frame = +2 Query: 47 HGDYDEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQN-GVSKGFGFV 223 H E D R +FVG + T + + F CG+I + ++ D+N G KG+G++ Sbjct: 55 HAHQLEADSR----SIFVGNITPDVTPEQIEDHFKDCGQIKRITLLYDRNTGTPKGYGYI 110 Query: 224 RF---AERECAYIAKRQKNGVELQGKRLAV 304 F A RE A Q NG EL+GK++AV Sbjct: 111 EFESPAYREKAL----QLNGGELKGKKIAV 136
>DAZL_CALJA (Q9BGN8) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted| in azoospermia-like 1) Length = 296 Score = 47.8 bits (112), Expect = 1e-05 Identities = 28/98 (28%), Positives = 51/98 (52%) Frame = +2 Query: 38 AASHGDYDEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFG 217 AA+ Y + ++ VFVGG+ E +R F+ G + +++I+ D+ GVSKG+G Sbjct: 24 AATSQGYVLPEGKIMPNTVFVGGIDVRMDETEIRGFFARYGSVKEVKIITDRTGVSKGYG 83 Query: 218 FVRFAERECAYIAKRQKNGVELQGKRLAVDLSLDQDTL 331 FV F + K ++ + GK+L + ++ + L Sbjct: 84 FVSFFND--VDVQKIVESQINFHGKKLKLGPAIRKQNL 119
>YG41_SCHPO (O60176) Hypothetical RNA-binding protein C23E6.01c in chromosome| II Length = 473 Score = 47.4 bits (111), Expect = 2e-05 Identities = 29/80 (36%), Positives = 42/80 (52%) Frame = +2 Query: 92 VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKRQKN 271 VFVGGL + +E L+ +F GEIV ++I KG GFV+F R+ A IA Q Sbjct: 305 VFVGGLSKFVSEEELKYLFQNFGEIVYVKIPP-----GKGCGFVQFVNRQSAEIAINQLQ 359 Query: 272 GVELQGKRLAVDLSLDQDTL 331 G L R+ + +Q+ + Sbjct: 360 GYPLGNSRIRLSWGRNQNPI 379 Score = 31.6 bits (70), Expect = 1.1 Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 2/50 (4%) Frame = +2 Query: 92 VFVGGLPRSATEGTLREIF-STCGEIVDLRIMKD-QNGVSKGFGFVRFAE 235 +FVG L + E + +F S +IM D Q VS+G+GFVRF + Sbjct: 188 IFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRFTD 237
>NUCL_HUMAN (P19338) Nucleolin (Protein C23)| Length = 709 Score = 47.4 bits (111), Expect = 2e-05 Identities = 32/104 (30%), Positives = 53/104 (50%), Gaps = 10/104 (9%) Frame = +2 Query: 98 VGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKRQKNGV 277 + L SATE TL+E+F + +++ ++QNG SKG+ F+ FA E A A N Sbjct: 489 LSNLSYSATEETLQEVFE---KATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKR 545 Query: 278 ELQGKRLAVDL----------SLDQDTLFFGNLCKEWSAEEFEE 379 E++G+ + ++L S TLF L ++ + E +E Sbjct: 546 EIEGRAIRLELQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKE 589 Score = 45.8 bits (107), Expect = 5e-05 Identities = 30/73 (41%), Positives = 38/73 (52%), Gaps = 1/73 (1%) Frame = +2 Query: 92 VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKD-QNGVSKGFGFVRFAERECAYIAKRQK 268 +FV GL TE TL+E F V RI+ D + G SKGFGFV F E A AK Sbjct: 573 LFVKGLSEDTTEETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAM 629 Query: 269 NGVELQGKRLAVD 307 E+ G ++ +D Sbjct: 630 EDGEIDGNKVTLD 642
>RBM7_MOUSE (Q9CQT2) RNA-binding protein 7 (RNA-binding motif protein 7)| Length = 265 Score = 47.4 bits (111), Expect = 2e-05 Identities = 24/71 (33%), Positives = 37/71 (52%) Frame = +2 Query: 92 VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKRQKN 271 +FVG L TE L E+F G ++ ++I KD++G K F FV F A N Sbjct: 12 LFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKLKQFAFVNFKHEVSVPYAMNLLN 71 Query: 272 GVELQGKRLAV 304 G++L G+ + + Sbjct: 72 GIKLFGRPIKI 82
>PUB1_YEAST (P32588) Nuclear and cytoplasmic polyadenylated RNA-binding protein| PUB1 (ARS consensus-binding protein ACBP-60) (Poly(U)-binding protein) (Poly uridylate-binding protein) Length = 452 Score = 47.4 bits (111), Expect = 2e-05 Identities = 30/119 (25%), Positives = 56/119 (47%), Gaps = 8/119 (6%) Frame = +2 Query: 71 RRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAY 250 R ++VG L ++ TE L++ F G I +++IM D+N + + FV + + A Sbjct: 69 RETSDRVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDAN 128 Query: 251 IAKRQKNGVELQGKRLAVDLSL--------DQDTLFFGNLCKEWSAEEFEELIHKTFKD 403 IA + NG +++ + ++ + D LF G+L + +E + FKD Sbjct: 129 IALQTLNGKQIENNIVKINWAFQSQQSSSDDTFNLFVGDL----NVNVDDETLRNAFKD 183 Score = 41.6 bits (96), Expect = 0.001 Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 1/79 (1%) Frame = +2 Query: 92 VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKD-QNGVSKGFGFVRFAERECAYIAKRQK 268 +FVG L + + TLR F + +M D Q G S+G+GFV F ++ A A Sbjct: 163 LFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSM 222 Query: 269 NGVELQGKRLAVDLSLDQD 325 G +L G+ L ++ + +D Sbjct: 223 QGQDLNGRPLRINWAAKRD 241 Score = 28.9 bits (63), Expect = 6.9 Identities = 18/68 (26%), Positives = 30/68 (44%) Frame = +2 Query: 95 FVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKRQKNG 274 ++G +P ATE L +F G I+D + + KG F+++ E A + Sbjct: 343 YIGNIPHFATEADLIPLFQNFGFILDFKHYPE-----KGCCFIKYDTHEQAAVCIVALAN 397 Query: 275 VELQGKRL 298 QG+ L Sbjct: 398 FPFQGRNL 405
>MRD1_USTMA (Q4PC17) Multiple RNA-binding domain-containing protein 1| Length = 858 Score = 47.4 bits (111), Expect = 2e-05 Identities = 31/111 (27%), Positives = 58/111 (52%), Gaps = 3/111 (2%) Frame = +2 Query: 8 EGEEPKMDRRAASHGDYDEQ--DRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRI 181 E ++ +M R+A + D++ D+ ++ +F+ LP +A+ + F + G + + I Sbjct: 286 ECKQAEMQRKAQQAAEKDQKLVDQIMESGRLFIRNLPFAASGDEILAFFESFGTVKQVHI 345 Query: 182 MKD-QNGVSKGFGFVRFAERECAYIAKRQKNGVELQGKRLAVDLSLDQDTL 331 D Q SKG FV F++ A A R K+G QG+ L + ++++D L Sbjct: 346 PLDKQTKASKGLAFVSFSDPAHALAAYRAKDGSTFQGRLLHLLPAVNKDAL 396 Score = 46.6 bits (109), Expect = 3e-05 Identities = 24/76 (31%), Positives = 42/76 (55%) Frame = +2 Query: 86 AEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKRQ 265 + + V GLP T+ LRE FS G + D+++M+ +G S+ FGFV + + A A Sbjct: 2 SRLIVRGLPSYLTDARLREHFSQKGAVTDVKLMRRPDGTSRKFGFVGYRSEQEAQQALDY 61 Query: 266 KNGVELQGKRLAVDLS 313 N + R++++L+ Sbjct: 62 FNRTFIDTSRISIELA 77 Score = 42.4 bits (98), Expect = 6e-04 Identities = 21/75 (28%), Positives = 40/75 (53%) Frame = +2 Query: 89 EVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKRQK 268 ++ + LP AT+ +R++FS+ G++ +R+ K + ++GFGFV ++ A A Sbjct: 720 KILIKNLPFEATKRDIRDLFSSQGQLKSVRLPKKFDNTTRGFGFVEYSTVREAQSAMEAL 779 Query: 269 NGVELQGKRLAVDLS 313 L G+ L + S Sbjct: 780 KHTHLLGRHLVLQWS 794
>NUCL_MACFA (Q4R4J7) Nucleolin| Length = 710 Score = 47.4 bits (111), Expect = 2e-05 Identities = 32/104 (30%), Positives = 53/104 (50%), Gaps = 10/104 (9%) Frame = +2 Query: 98 VGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKRQKNGV 277 + L SATE TL+E+F + +++ ++QNG SKG+ F+ FA E A A N Sbjct: 490 LSNLSYSATEETLQEVFE---KATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKR 546 Query: 278 ELQGKRLAVDL----------SLDQDTLFFGNLCKEWSAEEFEE 379 E++G+ + ++L S TLF L ++ + E +E Sbjct: 547 EIEGRAIRLELQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKE 590 Score = 45.8 bits (107), Expect = 5e-05 Identities = 30/73 (41%), Positives = 38/73 (52%), Gaps = 1/73 (1%) Frame = +2 Query: 92 VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKD-QNGVSKGFGFVRFAERECAYIAKRQK 268 +FV GL TE TL+E F V RI+ D + G SKGFGFV F E A AK Sbjct: 574 LFVKGLSEDTTEETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAM 630 Query: 269 NGVELQGKRLAVD 307 E+ G ++ +D Sbjct: 631 EDGEIDGNKVTLD 643
>PABP5_PONPY (P60050) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 47.4 bits (111), Expect = 2e-05 Identities = 26/77 (33%), Positives = 39/77 (50%) Frame = +2 Query: 74 RVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYI 253 R VFV + + L+E+F G +++++D +G SKGFGFVR+ E A Sbjct: 195 RATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQK 254 Query: 254 AKRQKNGVELQGKRLAV 304 A +G + GK L V Sbjct: 255 AVLDLHGKSIDGKVLYV 271 Score = 41.6 bits (96), Expect = 0.001 Identities = 25/82 (30%), Positives = 41/82 (50%) Frame = +2 Query: 59 DEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAER 238 D++ R+ +F+ L +S L +FS G I+ +++ D NG SKG+ +V F Sbjct: 97 DDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSL 155 Query: 239 ECAYIAKRQKNGVELQGKRLAV 304 A A NGV L +++ V Sbjct: 156 AAANRAIWHMNGVRLNNRQVYV 177
>PABP5_PANTR (P60049) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 47.4 bits (111), Expect = 2e-05 Identities = 26/77 (33%), Positives = 39/77 (50%) Frame = +2 Query: 74 RVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYI 253 R VFV + + L+E+F G +++++D +G SKGFGFVR+ E A Sbjct: 195 RATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQK 254 Query: 254 AKRQKNGVELQGKRLAV 304 A +G + GK L V Sbjct: 255 AVLDLHGKSIDGKVLYV 271 Score = 41.6 bits (96), Expect = 0.001 Identities = 25/82 (30%), Positives = 41/82 (50%) Frame = +2 Query: 59 DEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAER 238 D++ R+ +F+ L +S L +FS G I+ +++ D NG SKG+ +V F Sbjct: 97 DDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSL 155 Query: 239 ECAYIAKRQKNGVELQGKRLAV 304 A A NGV L +++ V Sbjct: 156 AAANRAIWHMNGVRLNNRQVYV 177
>PABP5_MACMU (Q7JGR2) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 47.4 bits (111), Expect = 2e-05 Identities = 26/77 (33%), Positives = 39/77 (50%) Frame = +2 Query: 74 RVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYI 253 R VFV + + L+E+F G +++++D +G SKGFGFVR+ E A Sbjct: 195 RATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQK 254 Query: 254 AKRQKNGVELQGKRLAV 304 A +G + GK L V Sbjct: 255 AVLDLHGKSIDGKVLYV 271 Score = 41.6 bits (96), Expect = 0.001 Identities = 25/82 (30%), Positives = 41/82 (50%) Frame = +2 Query: 59 DEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAER 238 D++ R+ +F+ L +S L +FS G I+ +++ D NG SKG+ +V F Sbjct: 97 DDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSL 155 Query: 239 ECAYIAKRQKNGVELQGKRLAV 304 A A NGV L +++ V Sbjct: 156 AAANRAIWHMNGVRLNNRQVYV 177
>PABP5_HYLLA (P60048) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 47.4 bits (111), Expect = 2e-05 Identities = 26/77 (33%), Positives = 39/77 (50%) Frame = +2 Query: 74 RVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYI 253 R VFV + + L+E+F G +++++D +G SKGFGFVR+ E A Sbjct: 195 RATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQK 254 Query: 254 AKRQKNGVELQGKRLAV 304 A +G + GK L V Sbjct: 255 AVLDLHGKSIDGKVLYV 271 Score = 41.6 bits (96), Expect = 0.001 Identities = 25/82 (30%), Positives = 41/82 (50%) Frame = +2 Query: 59 DEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAER 238 D++ R+ +F+ L +S L +FS G I+ +++ D NG SKG+ +V F Sbjct: 97 DDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSL 155 Query: 239 ECAYIAKRQKNGVELQGKRLAV 304 A A NGV L +++ V Sbjct: 156 AAANRAIWHMNGVRLNNRQVYV 177
>PABP5_HUMAN (Q96DU9) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 47.4 bits (111), Expect = 2e-05 Identities = 26/77 (33%), Positives = 39/77 (50%) Frame = +2 Query: 74 RVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYI 253 R VFV + + L+E+F G +++++D +G SKGFGFVR+ E A Sbjct: 195 RATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQK 254 Query: 254 AKRQKNGVELQGKRLAV 304 A +G + GK L V Sbjct: 255 AVLDLHGKSIDGKVLYV 271 Score = 41.6 bits (96), Expect = 0.001 Identities = 25/82 (30%), Positives = 41/82 (50%) Frame = +2 Query: 59 DEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAER 238 D++ R+ +F+ L +S L +FS G I+ +++ D NG SKG+ +V F Sbjct: 97 DDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSL 155 Query: 239 ECAYIAKRQKNGVELQGKRLAV 304 A A NGV L +++ V Sbjct: 156 AAANRAIWHMNGVRLNNRQVYV 177
>PABP5_GORGO (P60047) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 47.4 bits (111), Expect = 2e-05 Identities = 26/77 (33%), Positives = 39/77 (50%) Frame = +2 Query: 74 RVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYI 253 R VFV + + L+E+F G +++++D +G SKGFGFVR+ E A Sbjct: 195 RATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQK 254 Query: 254 AKRQKNGVELQGKRLAV 304 A +G + GK L V Sbjct: 255 AVLDLHGKSIDGKVLYV 271 Score = 41.6 bits (96), Expect = 0.001 Identities = 25/82 (30%), Positives = 41/82 (50%) Frame = +2 Query: 59 DEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAER 238 D++ R+ +F+ L +S L +FS G I+ +++ D NG SKG+ +V F Sbjct: 97 DDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSL 155 Query: 239 ECAYIAKRQKNGVELQGKRLAV 304 A A NGV L +++ V Sbjct: 156 AAANRAIWHMNGVRLNNRQVYV 177
>NUCL_PONPY (Q5RF26) Nucleolin| Length = 711 Score = 47.4 bits (111), Expect = 2e-05 Identities = 32/104 (30%), Positives = 53/104 (50%), Gaps = 10/104 (9%) Frame = +2 Query: 98 VGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKRQKNGV 277 + L SATE TL+E+F + +++ ++QNG SKG+ F+ FA E A A N Sbjct: 491 LSNLSYSATEETLQEVFE---KATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKR 547 Query: 278 ELQGKRLAVDL----------SLDQDTLFFGNLCKEWSAEEFEE 379 E++G+ + ++L S TLF L ++ + E +E Sbjct: 548 EIEGRAIRLELQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKE 591 Score = 45.8 bits (107), Expect = 5e-05 Identities = 30/73 (41%), Positives = 38/73 (52%), Gaps = 1/73 (1%) Frame = +2 Query: 92 VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKD-QNGVSKGFGFVRFAERECAYIAKRQK 268 +FV GL TE TL+E F V RI+ D + G SKGFGFV F E A AK Sbjct: 575 LFVKGLSEDTTEETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAM 631 Query: 269 NGVELQGKRLAVD 307 E+ G ++ +D Sbjct: 632 EDGEIDGNKVTLD 644
>ROC1_ARATH (Q9ZUU4) Putative ribonucleoprotein At2g37220, chloroplast| precursor Length = 289 Score = 47.0 bits (110), Expect = 2e-05 Identities = 25/75 (33%), Positives = 43/75 (57%), Gaps = 1/75 (1%) Frame = +2 Query: 83 GAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQN-GVSKGFGFVRFAERECAYIAK 259 G V+VG L + L +FS G++V+ R++ D++ G SKGFGFV + + A Sbjct: 203 GNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAI 262 Query: 260 RQKNGVELQGKRLAV 304 + +G +L G+++ V Sbjct: 263 KSLDGADLDGRQIRV 277 Score = 46.2 bits (108), Expect = 4e-05 Identities = 25/74 (33%), Positives = 41/74 (55%), Gaps = 1/74 (1%) Frame = +2 Query: 89 EVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQ-NGVSKGFGFVRFAERECAYIAKRQ 265 ++FVG LP + L ++F + G + + ++ D+ G S+GFGFV + A +Q Sbjct: 92 KLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQ 151 Query: 266 KNGVELQGKRLAVD 307 NG EL G+ L V+ Sbjct: 152 FNGYELDGRPLRVN 165
>RBM11_HUMAN (P57052) Putative RNA-binding protein 11 (RNA-binding motif protein| 11) Length = 281 Score = 47.0 bits (110), Expect = 2e-05 Identities = 27/71 (38%), Positives = 34/71 (47%) Frame = +2 Query: 92 VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKRQKN 271 VFVG L E L E+F G + + I KD+ G K FGFV F E A N Sbjct: 12 VFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLN 71 Query: 272 GVELQGKRLAV 304 G+ L G+ + V Sbjct: 72 GIRLYGRPINV 82
>RBM8A_DROME (Q9V535) RNA-binding protein 8A (Protein tsunagi)| Length = 165 Score = 47.0 bits (110), Expect = 2e-05 Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 1/80 (1%) Frame = +2 Query: 71 RRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQN-GVSKGFGFVRFAERECA 247 R V+G +FV + A E ++E F GEI ++ + D+ G SKG+ V + + A Sbjct: 68 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQA 127 Query: 248 YIAKRQKNGVELQGKRLAVD 307 AK NG E+ G+ + VD Sbjct: 128 LAAKEALNGAEIMGQTIQVD 147
>NSR1_YEAST (P27476) Nuclear localization sequence-binding protein (P67)| Length = 414 Score = 47.0 bits (110), Expect = 2e-05 Identities = 38/167 (22%), Positives = 72/167 (43%), Gaps = 20/167 (11%) Frame = +2 Query: 2 RHEGEEPKMDRRAASHGDYDEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRI 181 + + E+ + + S + + + A +FVG L S + L++ F G ++ R+ Sbjct: 140 KRKSEDAEEEEDEESSNKKQKNEETEEPATIFVGRLSWSIDDEWLKKEFEHIGGVIGARV 199 Query: 182 MKDQN-GVSKGFGFVRFAERECAYIAKRQKNGVELQGKRLAVDLSLDQ------------ 322 + ++ S+G+G+V F + A A ++ G E+ G+ + D+S + Sbjct: 200 IYERGTDRSRGYGYVDFENKSYAEKAIQEMQGKEIDGRPINCDMSTSKPAGNNDRAKKFG 259 Query: 323 -------DTLFFGNLCKEWSAEEFEELIHKTFKDVISVDLAMAPNLD 442 DTLF GNL + EL K +V+SV + P + Sbjct: 260 DTPSEPSDTLFLGNLSFNADRDAIFELFAK-HGEVVSVRIPTHPETE 305 Score = 37.7 bits (86), Expect = 0.015 Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 1/75 (1%) Frame = +2 Query: 92 VFVGGLPRSATEGTLREIFSTCGEIVDLRI-MKDQNGVSKGFGFVRFAERECAYIAKRQK 268 +F+G L +A + E+F+ GE+V +RI + KGFG+V+F+ E A A Sbjct: 269 LFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDAL 328 Query: 269 NGVELQGKRLAVDLS 313 G + + + +D S Sbjct: 329 QGEYIDNRPVRLDFS 343
>PABPB_XENLA (Q6IP09) Polyadenylate-binding protein 1-B (Poly(A)-binding protein| 1-B) (Cytoplasmic poly(A)-binding protein 1-B) (PABP-B) (PABP 1-B) (xPABP1-B) Length = 633 Score = 47.0 bits (110), Expect = 2e-05 Identities = 27/82 (32%), Positives = 44/82 (53%) Frame = +2 Query: 59 DEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAER 238 D R+ +F+ L +S L + FS G I+ +++ D+NG SKG+GFV F + Sbjct: 90 DPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQ 148 Query: 239 ECAYIAKRQKNGVELQGKRLAV 304 E A A + NG+ L +++ V Sbjct: 149 EAAERAIDKMNGMLLNDRKVFV 170 Score = 46.6 bits (109), Expect = 3e-05 Identities = 24/71 (33%), Positives = 36/71 (50%) Frame = +2 Query: 92 VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKRQKN 271 V++ + L+E F G + +++M D +G S+GFGFV F E A A N Sbjct: 193 VYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDDHGKSRGFGFVSFERHEDAQKAVDDMN 252 Query: 272 GVELQGKRLAV 304 G +L GK + V Sbjct: 253 GKDLNGKAIFV 263 Score = 42.7 bits (99), Expect = 5e-04 Identities = 33/103 (32%), Positives = 53/103 (51%), Gaps = 4/103 (3%) Frame = +2 Query: 17 EPKMDRRAASHGDYDE--QDR--RVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIM 184 + K++R+ +++ QDR R +G ++V L + LR+ F+ G I ++M Sbjct: 267 QKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFTPFGSITSAKVM 326 Query: 185 KDQNGVSKGFGFVRFAERECAYIAKRQKNGVELQGKRLAVDLS 313 + G SKGFGFV F+ E A A + NG + K L V L+ Sbjct: 327 ME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
>DAZL_MOUSE (Q64368) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted| in azoospermia-like 1) Length = 298 Score = 47.0 bits (110), Expect = 2e-05 Identities = 25/80 (31%), Positives = 44/80 (55%) Frame = +2 Query: 92 VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKRQKN 271 VFVGG+ E +R F+ G + +++I+ D+ GVSKG+GFV F + K ++ Sbjct: 42 VFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYND--VDVQKIVES 99 Query: 272 GVELQGKRLAVDLSLDQDTL 331 + GK+L + ++ + L Sbjct: 100 QINFHGKKLKLGPAIRKQNL 119
>U2AF2_CAEBR (P90727) Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor| 65 kDa subunit) (U2 snRNP auxiliary factor large subunit) (U2AF65) Length = 488 Score = 46.6 bits (109), Expect = 3e-05 Identities = 24/80 (30%), Positives = 40/80 (50%) Frame = +2 Query: 89 EVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKRQK 268 ++F+GGLP TE ++E+ + G + + D G SKG+ F + + A Sbjct: 283 KIFIGGLPNYLTEDQVKELLCSFGPLKAFSLNVDSQGNSKGYAFAEYLDPTLTDQAIAGL 342 Query: 269 NGVELQGKRLAVDLSLDQDT 328 NG++L K+L V L+ T Sbjct: 343 NGMQLGDKQLVVQLACANQT 362
>MRD1_ASPFU (Q4WJT7) Multiple RNA-binding domain-containing protein 1| Length = 825 Score = 46.6 bits (109), Expect = 3e-05 Identities = 29/105 (27%), Positives = 55/105 (52%), Gaps = 7/105 (6%) Frame = +2 Query: 11 GEEPKMDRRAASHGDYDEQ--DRRVK----GAEVFVGGLPRSATEGTLREIFSTCGEIVD 172 G + D +AA +E+ D ++ + +FV LP A+E L +FS G+I + Sbjct: 270 GAQHSDDDKAAVESSVEEEEVDTNIEHIRLSSRLFVRNLPYDASESDLEPVFSKFGKIEE 329 Query: 173 LRIMKD-QNGVSKGFGFVRFAERECAYIAKRQKNGVELQGKRLAV 304 + + D ++ SKGF +V++ E + A A ++ +G QG+ + + Sbjct: 330 IHVAFDTRSTTSKGFAYVQYIEPDAAVQAYKELDGKHFQGRLMHI 374 Score = 39.7 bits (91), Expect = 0.004 Identities = 20/78 (25%), Positives = 39/78 (50%) Frame = +2 Query: 89 EVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKRQK 268 ++ + LP AT+ +R +F G++ +R+ K + ++GFGF F A A Sbjct: 703 KIIIKNLPFQATKKDVRSLFGAYGQLRSVRVPKKFDRSARGFGFADFVSAREAENAMDAL 762 Query: 269 NGVELQGKRLAVDLSLDQ 322 L G+RL ++ + ++ Sbjct: 763 KNTHLLGRRLVLEFANEE 780 Score = 34.7 bits (78), Expect = 0.13 Identities = 23/84 (27%), Positives = 40/84 (47%) Frame = +2 Query: 77 VKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIA 256 ++ VFV GLP + T LR FS+ +I D ++ + GFV F E A A Sbjct: 1 MENTRVFVSGLPPTFTNDQLRMHFSSRFQITDAHVLP-----KRRIGFVGFKSSEAAQQA 55 Query: 257 KRQKNGVELQGKRLAVDLSLDQDT 328 N ++ +++V+++ D+ Sbjct: 56 ASYFNKTYVKMSKISVEIAKPIDS 79
>ROC1_SPIOL (P28644) 28 kDa ribonucleoprotein, chloroplast (28RNP)| Length = 233 Score = 46.2 bits (108), Expect = 4e-05 Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 1/99 (1%) Frame = +2 Query: 20 PKMDRRAASHGDYDEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKD-QN 196 P+ A GD++ R V+VG LP L ++FS G++V R++ D + Sbjct: 133 PRGSPERAPRGDFEPSCR------VYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRET 186 Query: 197 GVSKGFGFVRFAERECAYIAKRQKNGVELQGKRLAVDLS 313 G S+GFGFV + A +G L G+ + V+++ Sbjct: 187 GRSRGFGFVTMSSESEVNDAIAALDGQTLDGRAVRVNVA 225 Score = 39.7 bits (91), Expect = 0.004 Identities = 27/76 (35%), Positives = 39/76 (51%), Gaps = 2/76 (2%) Frame = +2 Query: 86 AEVFVGGLPRSATEGTLREIFSTCG--EIVDLRIMKDQNGVSKGFGFVRFAERECAYIAK 259 A++FVG LP L IF G EI ++ I + S+GFGFV + E A A Sbjct: 55 AKLFVGNLPYDVDSEKLAGIFDAAGVVEIAEV-IYNRETDRSRGFGFVTMSTVEEAEKAV 113 Query: 260 RQKNGVELQGKRLAVD 307 NG ++ G++L V+ Sbjct: 114 ELLNGYDMDGRQLTVN 129
>SQD_DROME (Q08473) RNA-binding protein squid (Heterogeneous nuclear| ribonucleoprotein 40) (HNRNP 40) Length = 344 Score = 46.2 bits (108), Expect = 4e-05 Identities = 41/146 (28%), Positives = 63/146 (43%), Gaps = 1/146 (0%) Frame = +2 Query: 29 DRRAASHGDYDEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKD-QNGVS 205 D ++A+ G D+ DR++ FVGGL TE LR+ F GEI + + D Q G S Sbjct: 43 DNQSAASGQRDD-DRKL-----FVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRS 96 Query: 206 KGFGFVRFAERECAYIAKRQKNGVELQGKRLAVDLSLDQDTLFFGNLCKEWSAEEFEELI 385 +GF F+ F E + K +F G L E S EE + Sbjct: 97 RGFAFIVFTNTEAIDKVSAADEHIINSKKVDPKKAKARHGKIFVGGLTTEISDEEIKTYF 156 Query: 386 HKTFKDVISVDLAMAPNLDSSTSKRR 463 + F +++ V++ D S+R+ Sbjct: 157 GQ-FGNIVEVEMP----FDKQKSQRK 177
>TIA1_MOUSE (P52912) Nucleolysin TIA-1 (RNA-binding protein TIA-1)| Length = 386 Score = 46.2 bits (108), Expect = 4e-05 Identities = 24/66 (36%), Positives = 37/66 (56%) Frame = +2 Query: 92 VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKRQKN 271 V+ GG+ TE +R+ FS G+I+++R+ D KG+ FVRF+ E A A N Sbjct: 216 VYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD-----KGYSFVRFSSHESAAHAIVSVN 270 Query: 272 GVELQG 289 G ++G Sbjct: 271 GTTIEG 276 Score = 45.1 bits (105), Expect = 9e-05 Identities = 30/94 (31%), Positives = 43/94 (45%), Gaps = 1/94 (1%) Frame = +2 Query: 20 PKMDRRAASHGDYDEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQ-N 196 P ++ S R VFVG L T ++ F+ G I D R++KD Sbjct: 84 PSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMAT 143 Query: 197 GVSKGFGFVRFAERECAYIAKRQKNGVELQGKRL 298 G SKG+GFV F + A A +Q G L G+++ Sbjct: 144 GKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQI 177 Score = 38.1 bits (87), Expect = 0.011 Identities = 22/72 (30%), Positives = 37/72 (51%) Frame = +2 Query: 92 VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKRQKN 271 ++VG L R TE + ++FS G + +++ D G + + FV F E A A N Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAG-NDPYCFVEFHEHRHAAAALAAMN 67 Query: 272 GVELQGKRLAVD 307 G ++ GK + V+ Sbjct: 68 GRKIMGKEVKVN 79
>NUCL_RAT (P13383) Nucleolin (Protein C23)| Length = 712 Score = 46.2 bits (108), Expect = 4e-05 Identities = 35/148 (23%), Positives = 68/148 (45%), Gaps = 10/148 (6%) Frame = +2 Query: 5 HEGEEPKMDRRAASHGDYDEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIM 184 + GE+ + R + + + + + + L SATE TL+E+F + +++ Sbjct: 466 YTGEKGQRQERTGKNSTWSGESKTL-----VLSNLSYSATEETLQEVFE---KATFIKVP 517 Query: 185 KDQNGVSKGFGFVRFAERECAYIAKRQKNGVELQGKRLAVDL----------SLDQDTLF 334 ++ +G SKG+ F+ FA E A A N +E++G+ + ++L S TLF Sbjct: 518 QNPHGKSKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRLELQGPRGSPNARSQPSKTLF 577 Query: 335 FGNLCKEWSAEEFEELIHKTFKDVISVD 418 L ++ + E +E + + I D Sbjct: 578 VKGLSEDTTEETLKESFEGSVRARIVTD 605 Score = 45.8 bits (107), Expect = 5e-05 Identities = 30/73 (41%), Positives = 38/73 (52%), Gaps = 1/73 (1%) Frame = +2 Query: 92 VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKD-QNGVSKGFGFVRFAERECAYIAKRQK 268 +FV GL TE TL+E F V RI+ D + G SKGFGFV F E A AK Sbjct: 576 LFVKGLSEDTTEETLKESFEGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAM 632 Query: 269 NGVELQGKRLAVD 307 E+ G ++ +D Sbjct: 633 EDGEIDGNKVTLD 645 Score = 34.7 bits (78), Expect = 0.13 Identities = 21/79 (26%), Positives = 42/79 (53%), Gaps = 1/79 (1%) Frame = +2 Query: 71 RRVKGAEVFVG-GLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECA 247 ++V+ A + L + TE L+E+F + V++R++ Q+G SKG ++ F A Sbjct: 390 KKVRAARTLLAKNLSFNITEDELKEVFE---DAVEIRLVS-QDGRSKGIAYIEFKSEADA 445 Query: 248 YIAKRQKNGVELQGKRLAV 304 +K G E+ G+ +++ Sbjct: 446 EKNLEEKQGAEIDGRSVSL 464
>ROC2_ARATH (Q43349) 29 kDa ribonucleoprotein, chloroplast precursor| (RNA-binding protein cp29) Length = 342 Score = 45.8 bits (107), Expect = 5e-05 Identities = 24/75 (32%), Positives = 42/75 (56%), Gaps = 1/75 (1%) Frame = +2 Query: 83 GAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQN-GVSKGFGFVRFAERECAYIAK 259 G ++VG L + L +F+ G++V+ R++ D++ G SKGFGFV + + A Sbjct: 256 GNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAI 315 Query: 260 RQKNGVELQGKRLAV 304 NG +L G+++ V Sbjct: 316 NSLNGADLDGRQIRV 330 Score = 42.4 bits (98), Expect = 6e-04 Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 1/74 (1%) Frame = +2 Query: 89 EVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQ-NGVSKGFGFVRFAERECAYIAKRQ 265 ++FVG L + L ++F + G + + ++ D+ G S+GFGFV + A +Q Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQ 159 Query: 266 KNGVELQGKRLAVD 307 NG E +G+ L V+ Sbjct: 160 FNGYEFEGRPLRVN 173
>RBM8A_MOUSE (Q9CWZ3) RNA-binding protein 8A (RNA-binding motif protein 8A)| (Ribonucleoprotein RBM8A) Length = 174 Score = 45.8 bits (107), Expect = 5e-05 Identities = 34/101 (33%), Positives = 51/101 (50%), Gaps = 10/101 (9%) Frame = +2 Query: 35 RAASHGDYD--EQD-------RRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMK 187 RA DYD EQD R V+G +FV G+ ATE + + F+ GEI ++ + Sbjct: 47 RARMREDYDSVEQDGDEPGPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNL 106 Query: 188 D-QNGVSKGFGFVRFAERECAYIAKRQKNGVELQGKRLAVD 307 D + G KG+ V + + A A NG +L G+ ++VD Sbjct: 107 DRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 147
>RBM8A_HUMAN (Q9Y5S9) RNA-binding protein 8A (RNA-binding motif protein 8A)| (Ribonucleoprotein RBM8A) (RNA-binding protein Y14) (Binder of OVCA1-1) (BOV-1) Length = 174 Score = 45.8 bits (107), Expect = 5e-05 Identities = 34/101 (33%), Positives = 51/101 (50%), Gaps = 10/101 (9%) Frame = +2 Query: 35 RAASHGDYD--EQD-------RRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMK 187 RA DYD EQD R V+G +FV G+ ATE + + F+ GEI ++ + Sbjct: 47 RARMREDYDSVEQDGDEPGPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNL 106 Query: 188 D-QNGVSKGFGFVRFAERECAYIAKRQKNGVELQGKRLAVD 307 D + G KG+ V + + A A NG +L G+ ++VD Sbjct: 107 DRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 147
>NUCL_MOUSE (P09405) Nucleolin (Protein C23)| Length = 706 Score = 45.8 bits (107), Expect = 5e-05 Identities = 30/73 (41%), Positives = 38/73 (52%), Gaps = 1/73 (1%) Frame = +2 Query: 92 VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKD-QNGVSKGFGFVRFAERECAYIAKRQK 268 +FV GL TE TL+E F V RI+ D + G SKGFGFV F E A AK Sbjct: 570 LFVKGLSEDTTEETLKESFEGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAM 626 Query: 269 NGVELQGKRLAVD 307 E+ G ++ +D Sbjct: 627 EDGEIDGNKVTLD 639 Score = 34.7 bits (78), Expect = 0.13 Identities = 29/125 (23%), Positives = 54/125 (43%), Gaps = 18/125 (14%) Frame = +2 Query: 71 RRVKGAEVFVG-GLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECA 247 ++V+ A + L + TE L+E+F + +++R++ Q+G SKG ++ F A Sbjct: 388 KKVRAARTLLAKNLSFNITEDELKEVFE---DAMEIRLVS-QDGKSKGIAYIEFKSEADA 443 Query: 248 YIAKRQKNGVELQGKRLAV-----------------DLSLDQDTLFFGNLCKEWSAEEFE 376 +K G E+ G+ +++ S + TL NL + E E Sbjct: 444 EKNLEEKQGAEIDGRSVSLYYTGEKGQRQERTGKTSTWSGESKTLVLSNLSYSATKETLE 503 Query: 377 ELIHK 391 E+ K Sbjct: 504 EVFEK 508
>U2AF2_CAEEL (P90978) Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor| 65 kDa subunit) (U2 snRNP auxiliary factor large subunit) (U2AF65) Length = 496 Score = 45.8 bits (107), Expect = 5e-05 Identities = 23/75 (30%), Positives = 39/75 (52%) Frame = +2 Query: 89 EVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKRQK 268 ++F+GGLP TE ++E+ + G + + D G SKG+ F + + A Sbjct: 292 KIFIGGLPNYLTEDQVKELLCSFGPLKAFSLNVDSQGNSKGYAFAEYLDPTLTDQAIAGL 351 Query: 269 NGVELQGKRLAVDLS 313 NG++L K+L V L+ Sbjct: 352 NGMQLGDKQLVVQLA 366
>RBM19_HUMAN (Q9Y4C8) Probable RNA-binding protein 19 (RNA-binding motif protein| 19) Length = 960 Score = 45.4 bits (106), Expect = 7e-05 Identities = 39/138 (28%), Positives = 64/138 (46%), Gaps = 6/138 (4%) Frame = +2 Query: 71 RRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVS--KGFGFVRFAEREC 244 R+ +++ V +P A +RE+FST GE+ +R+ K G +GFGFV F ++ Sbjct: 827 RKQTTSKILVRNIPFQAHSREIRELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFLTKQ- 885 Query: 245 AYIAKRQKNGV----ELQGKRLAVDLSLDQDTLFFGNLCKEWSAEEFEELIHKTFKDVIS 412 AKR N + L G+RL ++ + + TL + +A F E K V+ Sbjct: 886 --DAKRAFNALCHSTHLYGRRLVLEWADSEVTL---QALRRKTAAHFHEPPKKKRSVVLD 940 Query: 413 VDLAMAPNLDSSTSKRRL 466 L DS + ++ L Sbjct: 941 EILEQLEGSDSDSEEQTL 958 Score = 42.4 bits (98), Expect = 6e-04 Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 1/86 (1%) Frame = +2 Query: 50 GDYDEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQ-NGVSKGFGFVR 226 G+ +E++ + +FV LP ++TE L ++FS G + +L D KGF F+ Sbjct: 390 GENEEEEDLAESGRLFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFIT 449 Query: 227 FAERECAYIAKRQKNGVELQGKRLAV 304 F E A A + +G QG+ L V Sbjct: 450 FMFPEHAVKAYSEVDGQVFQGRMLHV 475
>DND1_HUMAN (Q8IYX4) Dead end protein homolog 1 (RNA-binding motif,| single-stranded interacting protein 4) Length = 353 Score = 45.4 bits (106), Expect = 7e-05 Identities = 20/58 (34%), Positives = 34/58 (58%) Frame = +2 Query: 83 GAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIA 256 G+EVF+G LP+ E L +F G + + R+M +G+++GF + R++ R A A Sbjct: 57 GSEVFIGRLPQDVYEHQLIPLFQRVGRLYEFRLMMTFSGLNRGFAYARYSSRRGAQAA 114
>COVA1_HUMAN (Q16206) Tumor-associated hydroquinone oxidase (tNOX) (Cytosolic| ovarian carcinoma antigen 1) (APK1 antigen) [Includes: Hydroquinone [NADH] oxidase (EC 1.-.-.-); Protein disulfide-thiol oxidoreductase (EC 1.-.-.-)] Length = 610 Score = 45.4 bits (106), Expect = 7e-05 Identities = 35/101 (34%), Positives = 50/101 (49%), Gaps = 8/101 (7%) Frame = +2 Query: 92 VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAER----ECAYIA- 256 VFVGGLP + TE + E+F CGEI+ +R K K F +RFAE + Y++ Sbjct: 130 VFVGGLPENGTEQIIVEVFEQCGEIIAIRKSK------KNFCHIRFAEEYMVDKALYLSG 183 Query: 257 KRQKNGVELQGK---RLAVDLSLDQDTLFFGNLCKEWSAEE 370 R + G K RL VD + +D L+ EW ++ Sbjct: 184 YRIRLGSSTDKKDTGRLHVDFAQARDDLY------EWECKQ 218
>CIRBP_XENLA (O93235) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (xCIRP) Length = 163 Score = 45.4 bits (106), Expect = 7e-05 Identities = 25/74 (33%), Positives = 41/74 (55%), Gaps = 1/74 (1%) Frame = +2 Query: 89 EVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGV-SKGFGFVRFAERECAYIAKRQ 265 ++F+GGL E L + F+ G I ++ ++KD+ S+GFGFV F + A A Sbjct: 6 KLFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAMMA 65 Query: 266 KNGVELQGKRLAVD 307 NG + G+++ VD Sbjct: 66 MNGKSVDGRQIRVD 79
>SXL_DROSU (Q24668) Protein sex-lethal| Length = 354 Score = 45.4 bits (106), Expect = 7e-05 Identities = 32/115 (27%), Positives = 53/115 (46%), Gaps = 7/115 (6%) Frame = +2 Query: 68 DRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKD-QNGVSKGFGFVRFAEREC 244 D+R + V LP+ T+ L +F G I RIM+D + G S G+ FV F Sbjct: 121 DQRSSNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSFGYAFVDFTSEMD 180 Query: 245 AYIAKRQKNGVELQGKRLAVDL------SLDQDTLFFGNLCKEWSAEEFEELIHK 391 + A + NG+ ++ KRL V S+ L+ NL + + ++ + + K Sbjct: 181 SQRAIKVLNGITVRNKRLKVSYARPGGESIKDTNLYVTNLPRTITDDQLDTIFGK 235
>TIA1_HUMAN (P31483) Nucleolysin TIA-1 isoform p40 (RNA-binding protein TIA-1)| (p40-TIA-1) [Contains: Nucleolysin TIA-1 isoform p15 (p15-TIA-1)] Length = 386 Score = 45.4 bits (106), Expect = 7e-05 Identities = 30/94 (31%), Positives = 43/94 (45%), Gaps = 1/94 (1%) Frame = +2 Query: 20 PKMDRRAASHGDYDEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQ-N 196 P ++ S R VFVG L T ++ F+ G I D R++KD Sbjct: 84 PSSQKKDTSSSTVVSTQRSQNHFHVFVGDLSPQITTEDIKAAFAPFGRISDARVVKDMAT 143 Query: 197 GVSKGFGFVRFAERECAYIAKRQKNGVELQGKRL 298 G SKG+GFV F + A A +Q G L G+++ Sbjct: 144 GKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQI 177 Score = 45.1 bits (105), Expect = 9e-05 Identities = 24/66 (36%), Positives = 36/66 (54%) Frame = +2 Query: 92 VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKRQKN 271 V+ GG+ TE +R+ FS G+I+++R+ D KG+ FVRF E A A N Sbjct: 216 VYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD-----KGYSFVRFNSHESAAHAIVSVN 270 Query: 272 GVELQG 289 G ++G Sbjct: 271 GTTIEG 276 Score = 38.1 bits (87), Expect = 0.011 Identities = 22/72 (30%), Positives = 37/72 (51%) Frame = +2 Query: 92 VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKRQKN 271 ++VG L R TE + ++FS G + +++ D G + + FV F E A A N Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAG-NDPYCFVEFHEHRHAAAALAAMN 67 Query: 272 GVELQGKRLAVD 307 G ++ GK + V+ Sbjct: 68 GRKIMGKEVKVN 79
>NAM8_YEAST (Q00539) Protein NAM8| Length = 523 Score = 45.4 bits (106), Expect = 7e-05 Identities = 33/112 (29%), Positives = 54/112 (48%), Gaps = 5/112 (4%) Frame = +2 Query: 23 KMDRRAASHGDYDEQDRRVKGAE---VFVGGLPRSATEGTLREIF-STCGEIVDLRIMKD 190 K++ +S+ + + VK +FVG L + TE L E+F + +I+ D Sbjct: 139 KLNWATSSYSNSNNSLNNVKSGNNCSIFVGDLAPNVTESQLFELFINRYASTSHAKIVHD 198 Query: 191 Q-NGVSKGFGFVRFAERECAYIAKRQKNGVELQGKRLAVDLSLDQDTLFFGN 343 Q G+SKG+GFV+F + +A + GV L G+ + V + Q GN Sbjct: 199 QVTGMSKGYGFVKFTNSDEQQLALSEMQGVFLNGRAIKVGPTSGQQQHVSGN 250 Score = 34.7 bits (78), Expect = 0.13 Identities = 24/69 (34%), Positives = 32/69 (46%) Frame = +2 Query: 92 VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKRQKN 271 VF+GGL TE LR F G IV ++I V K GFV++ +R A A Sbjct: 315 VFIGGLSSLVTEDELRAYFQPFGTIVYVKI-----PVGKCCGFVQYVDRLSAEAAIAGMQ 369 Query: 272 GVELQGKRL 298 G + R+ Sbjct: 370 GFPIANSRV 378
>HRB1_YEAST (P38922) Protein HRB1 (Protein TOM34)| Length = 429 Score = 45.4 bits (106), Expect = 7e-05 Identities = 30/101 (29%), Positives = 44/101 (43%) Frame = +2 Query: 2 RHEGEEPKMDRRAASHGDYDEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRI 181 R + P + + D E K EV V LP S L++IF CG + + Sbjct: 208 RQDNPPPSNNIKERKALDRGELRHNRKTHEVIVKNLPASVNWQALKDIFKECGNVAHADV 267 Query: 182 MKDQNGVSKGFGFVRFAERECAYIAKRQKNGVELQGKRLAV 304 D +GVS G G V F + + + A + NG ++G L V Sbjct: 268 ELDGDGVSTGSGTVSFYDIKDLHRAIEKYNGYSIEGNVLDV 308 Score = 39.3 bits (90), Expect = 0.005 Identities = 34/111 (30%), Positives = 49/111 (44%) Frame = +2 Query: 56 YDEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAE 235 Y+E+ R +FVG L +T L E FS G++V I+ + G +G G V F Sbjct: 126 YEEKVNRNYSNSIFVGNLTYDSTPEDLTEFFSQIGKVVRADIITSR-GHHRGMGTVEFTN 184 Query: 236 RECAYIAKRQKNGVELQGKRLAVDLSLDQDTLFFGNLCKEWSAEEFEELIH 388 + A RQ +G +++ V QD N KE A + EL H Sbjct: 185 SDDVDRAIRQYDGAFFMDRKIFV----RQDNPPPSNNIKERKALDRGELRH 231
>COVA1_MOUSE (Q8R0Z2) Tumor-associated hydroquinone oxidase (tNOX) (Cytosolic| ovarian carcinoma antigen 1) (APK1 antigen) [Includes: Hydroquinone [NADH] oxidase (EC 1.-.-.-); Protein disulfide-thiol oxidoreductase (EC 1.-.-.-)] Length = 598 Score = 45.4 bits (106), Expect = 7e-05 Identities = 35/101 (34%), Positives = 50/101 (49%), Gaps = 8/101 (7%) Frame = +2 Query: 92 VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAER----ECAYIA- 256 VFVGGLP + TE + E+F CGEI+ +R K K F +RFAE + Y++ Sbjct: 101 VFVGGLPENGTEQIIVEVFEQCGEIIAIRKSK------KNFCHIRFAEEYMVDKALYLSG 154 Query: 257 KRQKNGVELQGK---RLAVDLSLDQDTLFFGNLCKEWSAEE 370 R + G K RL VD + +D L+ EW ++ Sbjct: 155 YRIRLGSSTDKKDTGRLHVDFAQARDDLY------EWECKQ 189
>TIAR_HUMAN (Q01085) Nucleolysin TIAR (TIA-1-related protein)| Length = 375 Score = 45.1 bits (105), Expect = 9e-05 Identities = 23/70 (32%), Positives = 38/70 (54%) Frame = +2 Query: 80 KGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAK 259 K V+ GG+ T+ +R+ FS G+I+++R+ + KG+ FVRF+ E A A Sbjct: 203 KNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE-----KGYSFVRFSTHESAAHAI 257 Query: 260 RQKNGVELQG 289 NG ++G Sbjct: 258 VSVNGTTIEG 267 Score = 41.6 bits (96), Expect = 0.001 Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 1/70 (1%) Frame = +2 Query: 92 VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQ-NGVSKGFGFVRFAERECAYIAKRQK 268 VFVG L T ++ F+ G+I D R++KD G SKG+GFV F + A A Sbjct: 99 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 158 Query: 269 NGVELQGKRL 298 G L G+++ Sbjct: 159 GGQWLGGRQI 168 Score = 35.0 bits (79), Expect = 0.097 Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 10/105 (9%) Frame = +2 Query: 92 VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKRQKN 271 ++VG L R TE + ++FS G +++ + + + FV F E A A N Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS-NDPYCFVEFYEHRDAAAALAAMN 69 Query: 272 GVELQGKRLAVD-----LSLDQDT-----LFFGNLCKEWSAEEFE 376 G ++ GK + V+ S +DT +F G+L E + E+ + Sbjct: 70 GRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIK 114
>YDB2_SCHPO (Q10355) Hypothetical RNA-binding protein C22E12.02 in chromosome I| Length = 219 Score = 45.1 bits (105), Expect = 9e-05 Identities = 21/61 (34%), Positives = 36/61 (59%) Frame = +2 Query: 92 VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKRQKN 271 +FVG L + +L + FS +V ++++D+ G ++GFGFV F + + A R+KN Sbjct: 32 LFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDREGKTRGFGFVSFKDSDQFLKAWREKN 91 Query: 272 G 274 G Sbjct: 92 G 92
>RBM28_HUMAN (Q9NW13) RNA-binding protein 28 (RNA-binding motif protein 28)| Length = 758 Score = 45.1 bits (105), Expect = 9e-05 Identities = 24/82 (29%), Positives = 46/82 (56%) Frame = +2 Query: 80 KGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAK 259 K A + + L +E L+ +F+ G ++++ I + +G +GFGFV+F A A Sbjct: 111 KKARLIIRNLSFKCSEDDLKTVFAQFGAVLEVNIPRKPDGKMRGFGFVQFKNLLEAGKAL 170 Query: 260 RQKNGVELQGKRLAVDLSLDQD 325 + N E++G+ +AVD ++ +D Sbjct: 171 KGMNMKEIKGRTVAVDWAVAKD 192 Score = 37.7 bits (86), Expect = 0.015 Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 7/89 (7%) Frame = +2 Query: 80 KGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRI-MKDQNGVSKGFGFVRFAERECAY-- 250 +G VF+ L + E L E+ GE+ +RI + SKG F +F +E A Sbjct: 332 EGKTVFIRNLSFDSEEEELGELLQQFGELKYVRIVLHPDTEHSKGCAFAQFMTQEAAQKC 391 Query: 251 ----IAKRQKNGVELQGKRLAVDLSLDQD 325 + + G++L G++L VDL++ +D Sbjct: 392 LLAASPENEAGGLKLDGRQLKVDLAVTRD 420 Score = 35.4 bits (80), Expect = 0.074 Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 1/54 (1%) Frame = +2 Query: 83 GAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNG-VSKGFGFVRFAERE 241 G +FVG LP SA L E+FS G + ++ ++ +GFG+V F+ E Sbjct: 2 GLTLFVGRLPPSARSEQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLE 55
>SXL_DROME (P19339) Protein sex-lethal| Length = 354 Score = 45.1 bits (105), Expect = 9e-05 Identities = 32/115 (27%), Positives = 52/115 (45%), Gaps = 7/115 (6%) Frame = +2 Query: 68 DRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKD-QNGVSKGFGFVRFAEREC 244 D R + V LP+ T+ L +F G I RIM+D + G S G+ FV F Sbjct: 119 DPRASNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSFGYAFVDFTSEMD 178 Query: 245 AYIAKRQKNGVELQGKRLAVDL------SLDQDTLFFGNLCKEWSAEEFEELIHK 391 + A + NG+ ++ KRL V S+ L+ NL + + ++ + + K Sbjct: 179 SQRAIKVLNGITVRNKRLKVSYARPGGESIKDTNLYVTNLPRTITDDQLDTIFGK 233
>TIAR_MOUSE (P70318) Nucleolysin TIAR (TIA-1-related protein)| Length = 392 Score = 45.1 bits (105), Expect = 9e-05 Identities = 23/70 (32%), Positives = 38/70 (54%) Frame = +2 Query: 80 KGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAK 259 K V+ GG+ T+ +R+ FS G+I+++R+ + KG+ FVRF+ E A A Sbjct: 220 KNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE-----KGYSFVRFSTHESAAHAI 274 Query: 260 RQKNGVELQG 289 NG ++G Sbjct: 275 VSVNGTTIEG 284 Score = 41.6 bits (96), Expect = 0.001 Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 1/70 (1%) Frame = +2 Query: 92 VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQ-NGVSKGFGFVRFAERECAYIAKRQK 268 VFVG L T ++ F+ G+I D R++KD G SKG+GFV F + A A Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175 Query: 269 NGVELQGKRL 298 G L G+++ Sbjct: 176 GGQWLGGRQI 185 Score = 31.6 bits (70), Expect = 1.1 Identities = 32/121 (26%), Positives = 51/121 (42%), Gaps = 26/121 (21%) Frame = +2 Query: 92 VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQN-----GVSKGFG-----------FV 223 ++VG L R TE + ++FS G +++ +Q S GF FV Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCFV 70 Query: 224 RFAERECAYIAKRQKNGVELQGKRLAVD-----LSLDQDT-----LFFGNLCKEWSAEEF 373 F E A A NG ++ GK + V+ S +DT +F G+L E + E+ Sbjct: 71 EFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDI 130 Query: 374 E 376 + Sbjct: 131 K 131
>SART3_PONPY (Q5REG1) Squamous cell carcinoma antigen recognized by T-cells 3| (SART-3) Length = 981 Score = 45.1 bits (105), Expect = 9e-05 Identities = 36/126 (28%), Positives = 56/126 (44%), Gaps = 21/126 (16%) Frame = +2 Query: 92 VFVGGLPRSATE--GTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKRQ 265 VFV LP S E LR +F CGE+V +R + G +G+ +V F E + A + + Sbjct: 724 VFVSNLPYSMQEPDAKLRPLFEACGEVVQIRPIFSNRGDFRGYRYVEFKEEKSA-LQALE 782 Query: 266 KNGVELQGKRLAV-----------------DLSLDQDTLFFGNLCKEWSAEEFEEL--IH 388 + ++G+ + V SL++ LF L + EE EE+ H Sbjct: 783 MDRKSVEGRPMFVSPCVDKSKNPDFKVFRYSTSLEKHKLFISGLPFSCTKEELEEICKAH 842 Query: 389 KTFKDV 406 T KD+ Sbjct: 843 GTVKDL 848 Score = 42.0 bits (97), Expect = 8e-04 Identities = 22/75 (29%), Positives = 40/75 (53%) Frame = +2 Query: 89 EVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKRQK 268 ++F+ GLP S T+ L EI G + DLR++ ++ G KG +V + A A + Sbjct: 820 KLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKM 879 Query: 269 NGVELQGKRLAVDLS 313 +G+ ++ + V +S Sbjct: 880 DGMTIKENVIKVAIS 894
>RBM19_MOUSE (Q8R3C6) Probable RNA-binding protein 19 (RNA-binding motif protein| 19) Length = 952 Score = 45.1 bits (105), Expect = 9e-05 Identities = 35/130 (26%), Positives = 63/130 (48%), Gaps = 3/130 (2%) Frame = +2 Query: 86 AEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVS--KGFGFVRFAERECAYIA- 256 +++ V +P A + +RE+FST GE+ +R+ K G +GFGFV F ++ A A Sbjct: 824 SKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAF 883 Query: 257 KRQKNGVELQGKRLAVDLSLDQDTLFFGNLCKEWSAEEFEELIHKTFKDVISVDLAMAPN 436 + L G+RL ++ + + T+ + +A F+E K V+ L + Sbjct: 884 NALCHSTHLYGRRLVLEWADSEVTV---QTLRRKTARHFQEPPKKKRSAVLDGILEQLED 940 Query: 437 LDSSTSKRRL 466 D+S ++ L Sbjct: 941 EDNSDGEQAL 950 Score = 37.7 bits (86), Expect = 0.015 Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 1/86 (1%) Frame = +2 Query: 50 GDYDEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQ-NGVSKGFGFVR 226 G+ +E++ +FV L +++E L ++FS G + +L D KGF FV Sbjct: 388 GENEEEEDLADSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVT 447 Query: 227 FAERECAYIAKRQKNGVELQGKRLAV 304 F E A A + +G QG+ L V Sbjct: 448 FMFPEHAVKAYAEVDGQVFQGRMLHV 473
>DAZL_BRARE (Q9YGW7) Deleted in azoospermia-like (DAZ-like protein) (zDazl)| Length = 229 Score = 44.7 bits (104), Expect = 1e-04 Identities = 18/48 (37%), Positives = 31/48 (64%) Frame = +2 Query: 92 VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAE 235 +FVGG+ E +RE F+ G + +++I+ + G+ KG+GFV F+E Sbjct: 49 LFVGGIDMKVDENEIREFFAKYGSVKEVKIITYRGGICKGYGFVYFSE 96
>ROA3_HUMAN (P51991) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)| Length = 378 Score = 44.7 bits (104), Expect = 1e-04 Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 1/76 (1%) Frame = +2 Query: 17 EPKMDRRAASHGDYDEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKD-Q 193 EPK RA S D + + ++FVGG+ E LR+ F G+I + +M+D Q Sbjct: 106 EPK---RAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQ 162 Query: 194 NGVSKGFGFVRFAERE 241 +G +GF FV F + + Sbjct: 163 SGKKRGFAFVTFDDHD 178 Score = 43.5 bits (101), Expect = 3e-04 Identities = 31/103 (30%), Positives = 55/103 (53%), Gaps = 5/103 (4%) Frame = +2 Query: 2 RHEGEEPKMDRRAASHGDYDEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRI 181 R + + + RR G ++ +++ ++F+GGL T+ +LRE F G + D + Sbjct: 9 RPQPDSGRRRRRRGEEGHDPKEPEQLR--KLFIGGLSFETTDDSLREHFEKWGTLTDCVV 66 Query: 182 MKD-QNGVSKGFGFVRFA---ERECAYIAKRQK-NGVELQGKR 295 M+D Q S+GFGFV ++ E + A A+ K +G ++ KR Sbjct: 67 MRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKR 109
>ROA3_RAT (Q6URK4) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)| Length = 379 Score = 44.7 bits (104), Expect = 1e-04 Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 1/76 (1%) Frame = +2 Query: 17 EPKMDRRAASHGDYDEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKD-Q 193 EPK RA S D + + ++FVGG+ E LR+ F G+I + +M+D Q Sbjct: 106 EPK---RAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQ 162 Query: 194 NGVSKGFGFVRFAERE 241 +G +GF FV F + + Sbjct: 163 SGKKRGFAFVTFDDHD 178 Score = 43.5 bits (101), Expect = 3e-04 Identities = 31/103 (30%), Positives = 55/103 (53%), Gaps = 5/103 (4%) Frame = +2 Query: 2 RHEGEEPKMDRRAASHGDYDEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRI 181 R + + + RR G ++ +++ ++F+GGL T+ +LRE F G + D + Sbjct: 9 RPQPDSGRRRRRRGEEGHDPKEPEQLR--KLFIGGLSFETTDDSLREHFEKWGTLTDCVV 66 Query: 182 MKD-QNGVSKGFGFVRFA---ERECAYIAKRQK-NGVELQGKR 295 M+D Q S+GFGFV ++ E + A A+ K +G ++ KR Sbjct: 67 MRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKR 109
>ROA3_MOUSE (Q8BG05) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)| Length = 379 Score = 44.7 bits (104), Expect = 1e-04 Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 1/76 (1%) Frame = +2 Query: 17 EPKMDRRAASHGDYDEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKD-Q 193 EPK RA S D + + ++FVGG+ E LR+ F G+I + +M+D Q Sbjct: 106 EPK---RAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQ 162 Query: 194 NGVSKGFGFVRFAERE 241 +G +GF FV F + + Sbjct: 163 SGKKRGFAFVTFDDHD 178 Score = 43.5 bits (101), Expect = 3e-04 Identities = 31/103 (30%), Positives = 55/103 (53%), Gaps = 5/103 (4%) Frame = +2 Query: 2 RHEGEEPKMDRRAASHGDYDEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRI 181 R + + + RR G ++ +++ ++F+GGL T+ +LRE F G + D + Sbjct: 9 RPQPDSGRRRRRRGEEGHDPKEPEQLR--KLFIGGLSFETTDDSLREHFEKWGTLTDCVV 66 Query: 182 MKD-QNGVSKGFGFVRFA---ERECAYIAKRQK-NGVELQGKR 295 M+D Q S+GFGFV ++ E + A A+ K +G ++ KR Sbjct: 67 MRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKR 109
>DND1_MOUSE (Q6VY05) Dead end protein homolog 1 (RNA-binding motif,| single-stranded interacting protein 4) Length = 352 Score = 44.3 bits (103), Expect = 2e-04 Identities = 19/58 (32%), Positives = 34/58 (58%) Frame = +2 Query: 83 GAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIA 256 G+EV++G LP+ E L +F G + + R+M +G+++GF + R++ R A A Sbjct: 57 GSEVYIGRLPQDVYEHQLIPLFQRVGRLYEFRLMMTFSGLNRGFAYARYSSRRGAQAA 114
>RBM14_PONPY (Q5RC41) RNA-binding protein 14 (RNA-binding motif protein 14)| Length = 669 Score = 44.3 bits (103), Expect = 2e-04 Identities = 24/75 (32%), Positives = 40/75 (53%) Frame = +2 Query: 89 EVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKRQK 268 ++FVG + + T LR +F G +++ ++KD + FV + A A Q Sbjct: 80 KIFVGNVSAACTSQELRSLFERRGRVIECDVVKD-------YAFVHMEKEADAKAAIAQL 132 Query: 269 NGVELQGKRLAVDLS 313 NG E++GKR+ V+LS Sbjct: 133 NGKEVKGKRINVELS 147
>RBM14_MOUSE (Q8C2Q3) RNA-binding protein 14 (RNA-binding motif protein 14)| Length = 669 Score = 44.3 bits (103), Expect = 2e-04 Identities = 24/75 (32%), Positives = 40/75 (53%) Frame = +2 Query: 89 EVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKRQK 268 ++FVG + + T LR +F G +++ ++KD + FV + A A Q Sbjct: 80 KIFVGNVSAACTSQELRSLFERRGRVIECDVVKD-------YAFVHMEKEADAKAAIAQL 132 Query: 269 NGVELQGKRLAVDLS 313 NG E++GKR+ V+LS Sbjct: 133 NGKEVKGKRINVELS 147
>RBM14_HUMAN (Q96PK6) RNA-binding protein 14 (RNA-binding motif protein 14)| (RRM-containing coactivator activator/modulator) (Synaptotagmin-interacting protein) (SYT-interacting protein) Length = 669 Score = 44.3 bits (103), Expect = 2e-04 Identities = 24/75 (32%), Positives = 40/75 (53%) Frame = +2 Query: 89 EVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKRQK 268 ++FVG + + T LR +F G +++ ++KD + FV + A A Q Sbjct: 80 KIFVGNVSAACTSQELRSLFERRGRVIECDVVKD-------YAFVHMEKEADAKAAIAQL 132 Query: 269 NGVELQGKRLAVDLS 313 NG E++GKR+ V+LS Sbjct: 133 NGKEVKGKRINVELS 147
>RBM14_BOVIN (Q5EA36) RNA-binding protein 14 (RNA-binding motif protein 14)| Length = 669 Score = 44.3 bits (103), Expect = 2e-04 Identities = 24/75 (32%), Positives = 40/75 (53%) Frame = +2 Query: 89 EVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKRQK 268 ++FVG + + T LR +F G +++ ++KD + FV + A A Q Sbjct: 80 KIFVGNVSAACTSQELRSLFERRGRVIECDVVKD-------YAFVHMEKEADAKAAIAQL 132 Query: 269 NGVELQGKRLAVDLS 313 NG E++GKR+ V+LS Sbjct: 133 NGKEVKGKRINVELS 147
>RSP4_CAEEL (Q09511) Probable splicing factor, arginine/serine-rich 4| (RNA-binding protein srp-2) (CeSC35) Length = 196 Score = 44.3 bits (103), Expect = 2e-04 Identities = 28/73 (38%), Positives = 39/73 (53%), Gaps = 1/73 (1%) Frame = +2 Query: 98 VGGLPRSATEGTLREIFSTCGEIVDLRIMKDQ-NGVSKGFGFVRFAERECAYIAKRQKNG 274 + L T LR F G+I D+ I +D+ + SKGFGFVRF ER A A + +G Sbjct: 23 IDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRDAEHALDRTDG 82 Query: 275 VELQGKRLAVDLS 313 + G+ L V L+ Sbjct: 83 KLVDGRELRVTLA 95
>MRD1_ASHGO (Q75A83) Multiple RNA-binding domain-containing protein 1| Length = 838 Score = 44.3 bits (103), Expect = 2e-04 Identities = 27/94 (28%), Positives = 47/94 (50%) Frame = +2 Query: 23 KMDRRAASHGDYDEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGV 202 K+ + +S + ++ ++ V LP AT + E+FS+ G++ +R+ K + Sbjct: 691 KISHKQSSLPKTSKGSKKKISGKIIVKNLPFEATRKDVFELFSSFGQLKSVRVPKKFDKS 750 Query: 203 SKGFGFVRFAERECAYIAKRQKNGVELQGKRLAV 304 ++GF FV F A A Q GV L G+RL + Sbjct: 751 ARGFAFVEFLLPSEAENAMDQLQGVHLLGRRLVM 784 Score = 35.8 bits (81), Expect = 0.057 Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 1/72 (1%) Frame = +2 Query: 92 VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKD-QNGVSKGFGFVRFAERECAYIAKRQK 268 +F+ + ATE +++FS GE+ ++ + D + G SKGF +V F + E A A + Sbjct: 303 LFLRNILYDATEEDFKQLFSPYGELEEVHVAVDTRTGQSKGFAYVLFKDPEHAANAYIEL 362 Query: 269 NGVELQGKRLAV 304 + QG+ L + Sbjct: 363 DKQIFQGRLLHI 374 Score = 35.4 bits (80), Expect = 0.074 Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 9/85 (10%) Frame = +2 Query: 86 AEVFVGGLPRSATEGTLREIF---------STCGEIVDLRIMKDQNGVSKGFGFVRFAER 238 + V V GLP E LR F + +I D++I+KD++G S+ F F+ + Sbjct: 2 SRVIVKGLPIYLEEARLRAHFLKRLQQQGRGSEDQITDVKIVKDKSGNSRRFAFIGYRSE 61 Query: 239 ECAYIAKRQKNGVELQGKRLAVDLS 313 + A+ A NG + R+ V ++ Sbjct: 62 QDAFDAIEYFNGSFIDTARIEVAMA 86
>ROA1_SCHAM (P21522) Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog| Length = 342 Score = 44.3 bits (103), Expect = 2e-04 Identities = 35/137 (25%), Positives = 65/137 (47%), Gaps = 12/137 (8%) Frame = +2 Query: 89 EVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKD-QNGVSKGFGFVRFAERECAYIAKRQ 265 ++F+GGL T+ +L++ F GEIVD+ +MKD + S+GFGF+ ++ A+ Sbjct: 18 KLFIGGLDYRTTDESLKQHFEQWGEIVDVVVMKDPKTKRSRGFGFITYSRAHMVDDAQNA 77 Query: 266 K----NGVELQGKRLAVDLSLDQ-------DTLFFGNLCKEWSAEEFEELIHKTFKDVIS 412 + +G ++ KR + + LF G + +E + + K + V+S Sbjct: 78 RPHKVDGRVVEPKRAVPRTEIGRPEAGATVKKLFVGGIKEEMEENDLRDYF-KQYGTVVS 136 Query: 413 VDLAMAPNLDSSTSKRR 463 + +D T K+R Sbjct: 137 AAIV----VDKETRKKR 149
>TRA2_DROVI (O02008) Transformer-2 sex-determining protein| Length = 272 Score = 44.3 bits (103), Expect = 2e-04 Identities = 33/108 (30%), Positives = 52/108 (48%), Gaps = 1/108 (0%) Frame = +2 Query: 2 RHEGEEPKMDRRAASHGDYDEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRI 181 RH DR+ Q R G V GL + T+ +RE+F+ G I +++ Sbjct: 81 RHYSGRTSRDRQRMRQARDHPQASRCIG----VFGLNTNTTQQKVRELFNKFGPIERIQM 136 Query: 182 MKDQNGV-SKGFGFVRFAERECAYIAKRQKNGVELQGKRLAVDLSLDQ 322 + D + S+GF F+ F A +AK G+E+ G+R+ VD S+ Q Sbjct: 137 VIDAHTHRSRGFCFIYFENLGDARVAKDACTGMEVDGRRIRVDYSITQ 184
>NOP4_YEAST (P37838) Nucleolar protein NOP4 (Nucleolar protein NOP77)| Length = 685 Score = 44.3 bits (103), Expect = 2e-04 Identities = 25/78 (32%), Positives = 39/78 (50%) Frame = +2 Query: 92 VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKRQKN 271 +FV +P+ T+ L + FS I ++KD N S+GFGFV FA + A + Sbjct: 28 LFVRSIPQDVTDEQLADFFSNFAPIKHAVVVKDTNKRSRGFGFVSFAVEDDTKEALAKAR 87 Query: 272 GVELQGKRLAVDLSLDQD 325 + G L VD++ +D Sbjct: 88 KTKFNGHILRVDIAKRRD 105 Score = 40.8 bits (94), Expect = 0.002 Identities = 26/108 (24%), Positives = 52/108 (48%), Gaps = 2/108 (1%) Frame = +2 Query: 8 EGEEPKMDRRAASHGDYDEQDRRVKGA-EVFVGGLPRSATEGT-LREIFSTCGEIVDLRI 181 E E + D D +D +KG ++ + +P S + L++IF G +V+ I Sbjct: 120 ESSEKITGQNNEDEDDADGEDSMLKGKPKLIIRNMPWSCRDPVKLKKIFGRYGTVVEATI 179 Query: 182 MKDQNGVSKGFGFVRFAERECAYIAKRQKNGVELQGKRLAVDLSLDQD 325 + ++G GF FV + IA +++ G+++AVD ++ ++ Sbjct: 180 PRKRDGKLCGFAFVTMKKISNCRIALENTKDLKIDGRKVAVDFAVQKN 227 Score = 34.3 bits (77), Expect = 0.16 Identities = 21/79 (26%), Positives = 40/79 (50%), Gaps = 1/79 (1%) Frame = +2 Query: 5 HEGEEPKMDRRAASHGDYDEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEI-VDLRI 181 +E E+ ++D+ + + + + + VFV +P ATE +L FS G + L + Sbjct: 263 NEEEDRQVDQASKNKESKRKAQNKREDFSVFVRNVPYDATEESLAPHFSKFGSVKYALPV 322 Query: 182 MKDQNGVSKGFGFVRFAER 238 + G++KG FV F ++ Sbjct: 323 IDKSTGLAKGTAFVAFKDQ 341
>ROA1_XENLA (P17130) Heterogeneous nuclear ribonucleoproteins A1 homolog (hnRNP| A1) (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) Length = 365 Score = 44.3 bits (103), Expect = 2e-04 Identities = 27/76 (35%), Positives = 38/76 (50%), Gaps = 1/76 (1%) Frame = +2 Query: 17 EPKMDRRAASHGDYDEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQ- 193 EPK RA S D + ++FVGG+ E LRE F G+I + IM D+ Sbjct: 85 EPK---RAVSREDSSRPGAHLTVKKIFVGGIKEDTEEDHLREYFEQYGKIEVIEIMTDRG 141 Query: 194 NGVSKGFGFVRFAERE 241 +G +GF FV F + + Sbjct: 142 SGKKRGFAFVTFEDHD 157 Score = 41.6 bits (96), Expect = 0.001 Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 5/74 (6%) Frame = +2 Query: 89 EVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGV-SKGFGFVRFA---ERECAYIA 256 ++F+GGL T+ +LRE F G + D +M+D N S+GFGFV + E + A A Sbjct: 15 KLFIGGLSFETTDESLREHFEQWGTLTDCVVMRDPNSKRSRGFGFVTYLSTDEVDAAMTA 74 Query: 257 KRQK-NGVELQGKR 295 + K +G ++ KR Sbjct: 75 RPHKVDGRVVEPKR 88
>SART3_HUMAN (Q15020) Squamous cell carcinoma antigen recognized by T-cells 3| (SART-3) (hSART-3) (Tat-interacting protein of 110 kDa) (Tip110) Length = 963 Score = 43.9 bits (102), Expect = 2e-04 Identities = 36/126 (28%), Positives = 56/126 (44%), Gaps = 21/126 (16%) Frame = +2 Query: 92 VFVGGLPRSATEGT--LREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKRQ 265 VFV LP S E LR +F CGE+V +R + G +G+ +V F E + A + + Sbjct: 706 VFVSNLPYSMQEPDTKLRPLFEACGEVVQIRPIFSNRGDFRGYCYVEFKEEKSA-LQALE 764 Query: 266 KNGVELQGKRLAV-----------------DLSLDQDTLFFGNLCKEWSAEEFEEL--IH 388 + ++G+ + V SL++ LF L + EE EE+ H Sbjct: 765 MDRKSVEGRPMFVSPCVDKSKNPDFKVFRYSTSLEKHKLFISGLPFSCTKEELEEICKAH 824 Query: 389 KTFKDV 406 T KD+ Sbjct: 825 GTVKDL 830 Score = 42.0 bits (97), Expect = 8e-04 Identities = 22/75 (29%), Positives = 40/75 (53%) Frame = +2 Query: 89 EVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKRQK 268 ++F+ GLP S T+ L EI G + DLR++ ++ G KG +V + A A + Sbjct: 802 KLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKM 861 Query: 269 NGVELQGKRLAVDLS 313 +G+ ++ + V +S Sbjct: 862 DGMTIKENIIKVAIS 876
>YDC1_SCHPO (Q10422) Hypothetical RNA-binding protein C25G10.01 in chromosome I| Length = 297 Score = 43.9 bits (102), Expect = 2e-04 Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 1/75 (1%) Frame = +2 Query: 83 GAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQ-NGVSKGFGFVRFAERECAYIAK 259 G ++FV G+ E L++IFS G + +RIM++ S+GFGF+ F+ E A A Sbjct: 100 GNDLFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATSAI 159 Query: 260 RQKNGVELQGKRLAV 304 N E G+ L V Sbjct: 160 DNLNSQEFYGRVLNV 174
>A2BP1_HUMAN (Q9NWB1) Ataxin-2-binding protein 1| Length = 397 Score = 43.9 bits (102), Expect = 2e-04 Identities = 23/83 (27%), Positives = 47/83 (56%) Frame = +2 Query: 59 DEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAER 238 + + + + + V +P + LR++F G+I+D+ I+ ++ G SKGFGFV F Sbjct: 108 ENTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG-SKGFGFVTFENS 166 Query: 239 ECAYIAKRQKNGVELQGKRLAVD 307 A A+ + +G ++G+++ V+ Sbjct: 167 ADADRAREKLHGTVVEGRKIEVN 189
>RBM9_HUMAN (O43251) RNA-binding protein 9 (RNA-binding motif protein 9)| (Hexaribonucleotide-binding protein 2) (Repressor of tamoxifen transcriptional activity) Length = 390 Score = 43.5 bits (101), Expect = 3e-04 Identities = 23/70 (32%), Positives = 42/70 (60%) Frame = +2 Query: 98 VGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKRQKNGV 277 V +P + LR++F G+I+D+ I+ ++ G SKGFGFV F A A+ + +G Sbjct: 125 VSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG-SKGFGFVTFENSADADRAREKLHGT 183 Query: 278 ELQGKRLAVD 307 ++G+++ V+ Sbjct: 184 VVEGRKIEVN 193
>SRR55_DROME (P26686) Serine-arginine protein 55 (SRP55) (Protein enhancer of| deformed) (52-kDa bracketing protein) (B52 protein) Length = 375 Score = 43.5 bits (101), Expect = 3e-04 Identities = 27/75 (36%), Positives = 36/75 (48%) Frame = +2 Query: 83 GAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKR 262 G+ V+VGGLP E L F G D+ I G+GFV F + A A Sbjct: 2 GSRVYVGGLPYGVRERDLERFFKGYGRTRDILI-------KNGYGFVEFEDYRDADDAVY 54 Query: 263 QKNGVELQGKRLAVD 307 + NG EL G+R+ V+ Sbjct: 55 ELNGKELLGERVVVE 69
>A2BP1_MOUSE (Q9JJ43) Ataxin-2-binding protein 1| Length = 396 Score = 43.5 bits (101), Expect = 3e-04 Identities = 23/70 (32%), Positives = 42/70 (60%) Frame = +2 Query: 98 VGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKRQKNGV 277 V +P + LR++F G+I+D+ I+ ++ G SKGFGFV F A A+ + +G Sbjct: 120 VSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG-SKGFGFVTFENSADADRAREKLHGT 178 Query: 278 ELQGKRLAVD 307 ++G+++ V+ Sbjct: 179 VVEGRKIEVN 188
>RO32_XENLA (P51992) Heterogeneous nuclear ribonucleoprotein A3 homolog 2| (hnRNP A3(B)) Length = 385 Score = 43.5 bits (101), Expect = 3e-04 Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 1/76 (1%) Frame = +2 Query: 17 EPKMDRRAASHGDYDEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKD-Q 193 EPK RA S D + ++FVGG+ E LR+ F G+I + +M+D Q Sbjct: 98 EPK---RAVSREDSARPGAHLTVKKIFVGGIKEDTEEYHLRDYFEGYGKIETIEVMEDRQ 154 Query: 194 NGVSKGFGFVRFAERE 241 +G +GF FV F + + Sbjct: 155 SGKKRGFAFVTFDDHD 170 Score = 42.0 bits (97), Expect = 8e-04 Identities = 24/63 (38%), Positives = 36/63 (57%), Gaps = 5/63 (7%) Frame = +2 Query: 59 DEQDRRVKGAE----VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKD-QNGVSKGFGFV 223 D+Q K E +F+GGL T+ +LRE F G++ D +M+D Q S+GFGFV Sbjct: 14 DDQGHEPKEPEQLRKLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFV 73 Query: 224 RFA 232 ++ Sbjct: 74 TYS 76
>RBM4_RABIT (Q9BDY9) RNA-binding protein 4 (RNA-binding motif protein 4) (Lark| homolog) Length = 359 Score = 43.5 bits (101), Expect = 3e-04 Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 8/105 (7%) Frame = +2 Query: 89 EVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKRQK 268 ++F+G LPR ATE +R +F G++++ I+K+ +GFV ++ A A R Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKN-------YGFVHIEDKTAAEDAIRNL 55 Query: 269 NGVELQGKRLAVDLSLDQD----TLFFGNLCKEWSAEE----FEE 379 + +L G + V+ S ++ L GN+ + +E FEE Sbjct: 56 HHYKLHGVNINVEASKNKSKASTKLHVGNISPTCTNQELRAKFEE 100
>RBM4B_HUMAN (Q9BQ04) RNA-binding protein 4B (RNA-binding motif protein 4B)| (RNA-binding protein 30) (RNA-binding motif protein 30) Length = 359 Score = 43.5 bits (101), Expect = 3e-04 Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 8/105 (7%) Frame = +2 Query: 89 EVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKRQK 268 ++F+G LPR ATE +R +F G++++ I+K+ +GFV ++ A A R Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKN-------YGFVHIEDKTAAEDAIRNL 55 Query: 269 NGVELQGKRLAVDLSLDQD----TLFFGNLCKEWSAEE----FEE 379 + +L G + V+ S ++ L GN+ + +E FEE Sbjct: 56 HHYKLHGVNINVEASKNKSKASTKLHVGNISPTCTNQELRAKFEE 100
>RBM4_MOUSE (Q8C7Q4) RNA-binding protein 4 (RNA-binding motif protein 4)| (RNA-binding motif protein 4a) (Lark homolog) (mLark) Length = 361 Score = 43.5 bits (101), Expect = 3e-04 Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 8/105 (7%) Frame = +2 Query: 89 EVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKRQK 268 ++F+G LPR ATE +R +F G++++ I+K+ +GFV ++ A A R Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKN-------YGFVHIEDKTAAEDAIRNL 55 Query: 269 NGVELQGKRLAVDLSLDQD----TLFFGNLCKEWSAEE----FEE 379 + +L G + V+ S ++ L GN+ + +E FEE Sbjct: 56 HHYKLHGVNINVEASKNKSKASTKLHVGNISPTCTNQELRAKFEE 100
>RBM28_MOUSE (Q8CGC6) RNA-binding protein 28 (RNA-binding motif protein 28)| Length = 749 Score = 43.5 bits (101), Expect = 3e-04 Identities = 24/82 (29%), Positives = 45/82 (54%) Frame = +2 Query: 80 KGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAK 259 K A + + L +E L+ +F+ G ++++ I K +G +GF FV+F A A Sbjct: 111 KKARLIIRNLSFKCSEDDLKAVFTHYGTVLEVNIPKKPDGKMRGFAFVQFKNLLEAGKAL 170 Query: 260 RQKNGVELQGKRLAVDLSLDQD 325 + N E++G+ +AVD ++ +D Sbjct: 171 KGANMKEIKGRTVAVDWAVAKD 192 Score = 35.8 bits (81), Expect = 0.057 Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 1/54 (1%) Frame = +2 Query: 83 GAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNG-VSKGFGFVRFAERE 241 G +FVG LP SA L E+FS G + ++ ++ +GFG+V F+ E Sbjct: 2 GLTLFVGRLPPSARSDQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLE 55
>RBM4B_RAT (Q64LC9) RNA-binding protein 4B (RNA-binding motif protein 4B)| (RNA-binding protein 30) (RNA-binding motif protein 30) (Zinc-responsive protein ZD7) Length = 357 Score = 43.5 bits (101), Expect = 3e-04 Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 8/105 (7%) Frame = +2 Query: 89 EVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKRQK 268 ++F+G LPR ATE +R +F G++++ I+K+ +GFV ++ A A R Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKN-------YGFVHIEDKTAAEDAIRNL 55 Query: 269 NGVELQGKRLAVDLSLDQD----TLFFGNLCKEWSAEE----FEE 379 + +L G + V+ S ++ L GN+ + +E FEE Sbjct: 56 HHYKLHGVNINVEASKNKSKASTKLHVGNISPTCTNQELRAKFEE 100
>RBM4B_MOUSE (Q8VE92) RNA-binding protein 4B (RNA-binding motif protein 4B)| (RNA-binding protein 30) (RNA-binding motif protein 30) Length = 357 Score = 43.5 bits (101), Expect = 3e-04 Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 8/105 (7%) Frame = +2 Query: 89 EVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKRQK 268 ++F+G LPR ATE +R +F G++++ I+K+ +GFV ++ A A R Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKN-------YGFVHIEDKTAAEDAIRNL 55 Query: 269 NGVELQGKRLAVDLSLDQD----TLFFGNLCKEWSAEE----FEE 379 + +L G + V+ S ++ L GN+ + +E FEE Sbjct: 56 HHYKLHGVNINVEASKNKSKASTKLHVGNISPTCTNQELRAKFEE 100
>MRD1_YARLI (Q6CEW9) Multiple RNA-binding domain-containing protein 1| Length = 828 Score = 43.1 bits (100), Expect = 4e-04 Identities = 23/96 (23%), Positives = 48/96 (50%), Gaps = 2/96 (2%) Frame = +2 Query: 23 KMDRRAASHGDYDE--QDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQN 196 K+ + ++ G +E + ++ +++ + LP AT+ ++++F G + +R+ K N Sbjct: 680 KLQLKISNRGQDEETTETKKAIDSKILIKNLPFEATKKDVQKLFGAFGSLKTVRVPKKFN 739 Query: 197 GVSKGFGFVRFAERECAYIAKRQKNGVELQGKRLAV 304 S+GF F + + A A G L G+RL + Sbjct: 740 SESRGFAFAEYVSAKEAEHAMSALQGTHLLGRRLVL 775 Score = 38.5 bits (88), Expect = 0.009 Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 1/76 (1%) Frame = +2 Query: 80 KGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRI-MKDQNGVSKGFGFVRFAERECAYIA 256 K +F+ L +A E R++FS GE+ ++ + + + G KGF V+F + E A A Sbjct: 299 KTGRLFLRNLLYTAKEEDFRQLFSQYGELEEVHLPINTKTGQCKGFAHVQFEDPENAIAA 358 Query: 257 KRQKNGVELQGKRLAV 304 ++G QG+ L + Sbjct: 359 YEAQDGKIFQGRLLHI 374
>ROA1_DROME (P07909) Heterogeneous nuclear ribonucleoprotein A1 (hnRNP core| protein A1-A) (PEN repeat clone P9) Length = 365 Score = 43.1 bits (100), Expect = 4e-04 Identities = 33/101 (32%), Positives = 48/101 (47%), Gaps = 1/101 (0%) Frame = +2 Query: 17 EPKMDRRAASHGDYDEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKD-Q 193 EPK RA D D + ++FVG L E ++R+ F G IVD+ I+ D + Sbjct: 102 EPK---RAVPRQDIDSPNAGATVKKLFVGALKDDHDEQSIRDYFQHFGNIVDINIVIDKE 158 Query: 194 NGVSKGFGFVRFAERECAYIAKRQKNGVELQGKRLAVDLSL 316 G +GF FV F + + QK +L GK + V +L Sbjct: 159 TGKKRGFAFVEFDDYDPVDKVVLQKQH-QLNGKMVDVKKAL 198 Score = 42.7 bits (99), Expect = 5e-04 Identities = 33/137 (24%), Positives = 64/137 (46%), Gaps = 12/137 (8%) Frame = +2 Query: 89 EVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKD-QNGVSKGFGFVRFAERECAYIAKRQ 265 ++F+GGL T+ L+ F G IVD+ +MKD + S+GFGF+ ++ A++ Sbjct: 32 KLFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKRSRGFGFITYSHSSMIDEAQKS 91 Query: 266 K----NGVELQGKRLAVDLSLDQDT-------LFFGNLCKEWSAEEFEELIHKTFKDVIS 412 + +G ++ KR +D LF G L + + + + F +++ Sbjct: 92 RPHKIDGRVVEPKRAVPRQDIDSPNAGATVKKLFVGALKDDHDEQSIRDYF-QHFGNIVD 150 Query: 413 VDLAMAPNLDSSTSKRR 463 +++ +D T K+R Sbjct: 151 INIV----IDKETGKKR 163
>YNR5_YEAST (P53883) Hypothetical 45.7 kDa protein in RPS3-PSD1 intergenic| region Length = 403 Score = 43.1 bits (100), Expect = 4e-04 Identities = 24/78 (30%), Positives = 42/78 (53%), Gaps = 1/78 (1%) Frame = +2 Query: 92 VFVGGLPRSATEGTLREIFSTCGEIVDLRIMK-DQNGVSKGFGFVRFAERECAYIAKRQK 268 +FVG L T+ LR+ F CG+IV +R+ + +G KGF F+ F E + + K Sbjct: 241 LFVGNLSFDVTDDLLRKHFQHCGDIVKIRMATFEDSGKCKGFAFIDFKNEEGSTNELKDK 300 Query: 269 NGVELQGKRLAVDLSLDQ 322 + ++ G+ L ++ D+ Sbjct: 301 SCRKIAGRPLRMEYGEDR 318
>MK67I_BRARE (Q8JIY8) MKI67 FHA domain-interacting nucleolar phosphoprotein-like| (Nucleolar phosphoprotein NOPP34-like protein) Length = 269 Score = 43.1 bits (100), Expect = 4e-04 Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 1/70 (1%) Frame = +2 Query: 92 VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKD-QNGVSKGFGFVRFAERECAYIAKRQK 268 ++VG LPR E L+ F G+++ LR+ + + G SKG+GFV F E A I Sbjct: 47 LYVGHLPRGLFEPQLKSYFEQFGKVLRLRVSRSKKTGGSKGYGFVEFECDEVAKIVAETM 106 Query: 269 NGVELQGKRL 298 N L G+R+ Sbjct: 107 NNY-LMGERI 115
>RBM4_HUMAN (Q9BWF3) RNA-binding protein 4 (RNA-binding motif protein 4)| (RNA-binding motif protein 4a) (Lark homolog) (hLark) Length = 364 Score = 43.1 bits (100), Expect = 4e-04 Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 8/105 (7%) Frame = +2 Query: 89 EVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKRQK 268 ++F+G LPR ATE +R +F G++++ I+K+ +GFV ++ A A R Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKN-------YGFVHIEDKTAAEDAIRNL 55 Query: 269 NGVELQGKRLAVDLSLDQD----TLFFGNLCKEWSAEE----FEE 379 + +L G + V+ S ++ L GN+ + +E FEE Sbjct: 56 HHYKLHGVNINVEASKNKSKTSTKLHVGNISPTCTNKELRAKFEE 100
>RO22_XENLA (P51990) Heterogeneous nuclear ribonucleoprotein A2 homolog 2| (hnRNP A2(B)) Length = 358 Score = 43.1 bits (100), Expect = 4e-04 Identities = 27/76 (35%), Positives = 39/76 (51%), Gaps = 1/76 (1%) Frame = +2 Query: 17 EPKMDRRAASHGDYDEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKD-Q 193 EPK RA + + + V ++FVGG+ E LRE F G+I I+ D Q Sbjct: 80 EPK---RAVAREESAKPGAHVTVKKLFVGGIKEDTEEHHLREYFEEYGKIESTEIITDKQ 136 Query: 194 NGVSKGFGFVRFAERE 241 +G +GFGFV F + + Sbjct: 137 SGKKRGFGFVTFNDHD 152 Score = 40.0 bits (92), Expect = 0.003 Identities = 19/49 (38%), Positives = 31/49 (63%), Gaps = 1/49 (2%) Frame = +2 Query: 89 EVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKD-QNGVSKGFGFVRFA 232 ++F+GGL TE +LR + G++ D +M+D + S+GFGFV F+ Sbjct: 10 KLFIGGLSFETTEESLRNFYEQWGQLTDCVVMRDPASKRSRGFGFVTFS 58
>RBM4_BOVIN (Q3MHX3) RNA-binding protein 4 (RNA-binding motif protein 4)| (RNA-binding motif protein 4a) Length = 362 Score = 43.1 bits (100), Expect = 4e-04 Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 8/105 (7%) Frame = +2 Query: 89 EVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKRQK 268 ++F+G LPR ATE +R +F G++++ I+K+ +GFV ++ A A R Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKN-------YGFVHIEDKTAAEDAIRNL 55 Query: 269 NGVELQGKRLAVDLSLDQD----TLFFGNLCKEWSAEE----FEE 379 + +L G + V+ S ++ L GN+ + +E FEE Sbjct: 56 HHYKLHGVNINVEASKNKSKTSTKLHVGNISPTCTNKELRAKFEE 100
>ROA2_MOUSE (O88569) Heterogeneous nuclear ribonucleoproteins A2/B1 (hnRNP A2 /| hnRNP B1) Length = 341 Score = 42.7 bits (99), Expect = 5e-04 Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 1/76 (1%) Frame = +2 Query: 17 EPKMDRRAASHGDYDEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKD-Q 193 EPK RA + + + V ++FVGG+ E LR+ F G+I + I+ D Q Sbjct: 80 EPK---RAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQ 136 Query: 194 NGVSKGFGFVRFAERE 241 +G +GFGFV F + + Sbjct: 137 SGKKRGFGFVTFDDHD 152 Score = 39.7 bits (91), Expect = 0.004 Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 4/61 (6%) Frame = +2 Query: 89 EVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKD-QNGVSKGFGFVRF---AERECAYIA 256 ++F+GGL TE +LR + G++ D +M+D + S+GFGFV F AE + A A Sbjct: 10 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 69 Query: 257 K 259 + Sbjct: 70 R 70
>RB97D_DROME (Q02926) Ribonucleoprotein RB97D| Length = 471 Score = 42.7 bits (99), Expect = 5e-04 Identities = 38/137 (27%), Positives = 65/137 (47%), Gaps = 12/137 (8%) Frame = +2 Query: 89 EVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKD-QNGVSKGFGFVRFAERECAYIAKRQ 265 ++F+GGL TE L+ + G++VD+ +M+D S+GFGF+ + + A+ Sbjct: 33 KLFIGGLAPYTTEENLKLFYGQWGKVVDVVVMRDAATKRSRGFGFITYTKSLMVDRAQEN 92 Query: 266 K----NGVELQGKRL-------AVDLSLDQDTLFFGNLCKEWSAEEFEELIHKTFKDVIS 412 + +G ++ KR + + ++ LF G L K+ EE F +V+S Sbjct: 93 RPHIIDGKTVEAKRALPRPERESRETNISVKKLFVGGL-KDNHDEECLREYFLQFGNVVS 151 Query: 413 VDLAMAPNLDSSTSKRR 463 V L D +T KRR Sbjct: 152 VKLL----TDKTTGKRR 164 Score = 41.6 bits (96), Expect = 0.001 Identities = 21/67 (31%), Positives = 37/67 (55%), Gaps = 1/67 (1%) Frame = +2 Query: 32 RRAASHGDYDEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQ-NGVSK 208 +RA + + ++ + ++FVGGL + E LRE F G +V ++++ D+ G + Sbjct: 105 KRALPRPERESRETNISVKKLFVGGLKDNHDEECLREYFLQFGNVVSVKLLTDKTTGKRR 164 Query: 209 GFGFVRF 229 GF FV F Sbjct: 165 GFAFVEF 171
>GRP1_SORBI (Q99069) Glycine-rich RNA-binding protein 1 (Fragment)| Length = 142 Score = 42.7 bits (99), Expect = 5e-04 Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 1/60 (1%) Frame = +2 Query: 131 TLREIFSTCGEIVDLRIMKDQNGV-SKGFGFVRFAERECAYIAKRQKNGVELQGKRLAVD 307 +L FST GE+++ +I+ D+ S+GFGFV F+ E A NG EL G+ + V+ Sbjct: 2 SLHSAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEEAMRSAIEGMNGKELDGRNITVN 61
>RSP6_CAEEL (Q18409) Probable splicing factor, arginine/serine-rich 6| (RNA-binding protein srp-1) (CeSRp20) Length = 179 Score = 42.7 bits (99), Expect = 5e-04 Identities = 29/79 (36%), Positives = 39/79 (49%) Frame = +2 Query: 86 AEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKRQ 265 A+V+VGGLP AT L EIF G I + + + GF FV + + A A R Sbjct: 3 AKVYVGGLPSDATSQELEEIFDRFGRIRKVWVARR----PPGFAFVEYDDVRDAEDAVRA 58 Query: 266 KNGVELQGKRLAVDLSLDQ 322 +G + G R V+LS Q Sbjct: 59 LDGSRICGVRARVELSTGQ 77
>ROA2_HUMAN (P22626) Heterogeneous nuclear ribonucleoproteins A2/B1 (hnRNP A2 /| hnRNP B1) Length = 353 Score = 42.7 bits (99), Expect = 5e-04 Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 1/76 (1%) Frame = +2 Query: 17 EPKMDRRAASHGDYDEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKD-Q 193 EPK RA + + + V ++FVGG+ E LR+ F G+I + I+ D Q Sbjct: 92 EPK---RAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQ 148 Query: 194 NGVSKGFGFVRFAERE 241 +G +GFGFV F + + Sbjct: 149 SGKKRGFGFVTFDDHD 164 Score = 39.7 bits (91), Expect = 0.004 Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 4/61 (6%) Frame = +2 Query: 89 EVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKD-QNGVSKGFGFVRF---AERECAYIA 256 ++F+GGL TE +LR + G++ D +M+D + S+GFGFV F AE + A A Sbjct: 22 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 81 Query: 257 K 259 + Sbjct: 82 R 82
>YG5B_YEAST (P53316) Hypothetical 89.5 kDa protein in MGA1-GCN4 intergenic| region Length = 781 Score = 42.4 bits (98), Expect = 6e-04 Identities = 21/78 (26%), Positives = 44/78 (56%), Gaps = 1/78 (1%) Frame = +2 Query: 92 VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQ-NGVSKGFGFVRFAERECAYIAKRQK 268 +FVGG+ +S + G L +FS G I+ ++++ D+ G G+GF+ + A + ++ Sbjct: 197 IFVGGIAKSLSIGELSFLFSKYGPILSMKLIYDKTKGEPNGYGFISYPLGSQASLCIKEL 256 Query: 269 NGVELQGKRLAVDLSLDQ 322 NG + G L ++ +++ Sbjct: 257 NGRTVNGSTLFINYHVER 274 Score = 28.9 bits (63), Expect = 6.9 Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 6/71 (8%) Frame = +2 Query: 113 RSATEGTLREIFSTCGEIVDLRIMKDQNG------VSKGFGFVRFAERECAYIAKRQKNG 274 RS T + F+ G + + + NG + KG+GF++ E A A NG Sbjct: 344 RSNTRSSSSVSFNEEGSVESNKSSNNTNGNAQDEDMLKGYGFIKLINHEQALAAIETFNG 403 Query: 275 VELQGKRLAVD 307 G RL V+ Sbjct: 404 FMWHGNRLVVN 414
>ROA1_BOVIN (P09867) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) (Unwinding protein 1) (UP1) (Fragment) Length = 195 Score = 42.4 bits (98), Expect = 6e-04 Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 1/76 (1%) Frame = +2 Query: 17 EPKMDRRAASHGDYDEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQ- 193 EPK RA S D + ++FVGG+ E LR+ F G+I + IM D+ Sbjct: 84 EPK---RAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRG 140 Query: 194 NGVSKGFGFVRFAERE 241 +G +GF FV F + + Sbjct: 141 SGKKRGFAFVTFDDHD 156 Score = 40.4 bits (93), Expect = 0.002 Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 1/52 (1%) Frame = +2 Query: 89 EVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGV-SKGFGFVRFAERE 241 ++F+GGL T+ +LR F G + D +M+D N S+GFGFV +A E Sbjct: 14 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVE 65
>ROC3_NICSY (P19682) 28 kDa ribonucleoprotein, chloroplast precursor (28RNP)| Length = 276 Score = 42.4 bits (98), Expect = 6e-04 Identities = 27/94 (28%), Positives = 47/94 (50%), Gaps = 3/94 (3%) Frame = +2 Query: 35 RAASHGDYDEQDRRV--KGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKD-QNGVS 205 +AA G E+ R ++VG +P + L ++FS G++V R++ D ++G S Sbjct: 172 KAAPRGSRPERAPRTFQPTYRIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRS 231 Query: 206 KGFGFVRFAERECAYIAKRQKNGVELQGKRLAVD 307 +GFGFV + A +G L G+ + V+ Sbjct: 232 RGFGFVTMSSEAEMSEAIANLDGQTLDGRTIRVN 265 Score = 36.6 bits (83), Expect = 0.033 Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 2/88 (2%) Frame = +2 Query: 50 GDYDEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCG--EIVDLRIMKDQNGVSKGFGFV 223 G+ +E + A++FVG LP L ++F G EI ++ I + S+GFGFV Sbjct: 85 GETEEYQEPSEDAKLFVGNLPYDIDSEGLAQLFQQAGVVEIAEV-IYNRETDRSRGFGFV 143 Query: 224 RFAERECAYIAKRQKNGVELQGKRLAVD 307 + E A A + +L G+ L V+ Sbjct: 144 TMSTVEEADKAVELYSQYDLNGRLLTVN 171
>G3BP_HUMAN (Q13283) Ras-GTPase-activating protein-binding protein 1 (EC| 3.6.1.-) (ATP-dependent DNA helicase VIII) (GAP SH3-domain-binding protein 1) (G3BP-1) (HDH-VIII) Length = 466 Score = 42.4 bits (98), Expect = 6e-04 Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 2/76 (2%) Frame = +2 Query: 20 PKMDRRAASHGDYDEQD--RRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQ 193 P+ R A GD + + R ++F+G LP + L++ F + G +V+LRI + Sbjct: 316 PRPIREAGEQGDIEPRRMVRHPDSHQLFIGNLPHEVDKSELKDFFQSYGNVVELRI--NS 373 Query: 194 NGVSKGFGFVRFAERE 241 G FGFV F + E Sbjct: 374 GGKLPNFGFVVFDDSE 389
>ROA1_RAT (P04256) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) (HDP) Length = 319 Score = 42.4 bits (98), Expect = 6e-04 Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 1/76 (1%) Frame = +2 Query: 17 EPKMDRRAASHGDYDEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQ- 193 EPK RA S D + ++FVGG+ E LR+ F G+I + IM D+ Sbjct: 84 EPK---RAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRG 140 Query: 194 NGVSKGFGFVRFAERE 241 +G +GF FV F + + Sbjct: 141 SGKKRGFAFVTFDDHD 156 Score = 40.4 bits (93), Expect = 0.002 Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 1/52 (1%) Frame = +2 Query: 89 EVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGV-SKGFGFVRFAERE 241 ++F+GGL T+ +LR F G + D +M+D N S+GFGFV +A E Sbjct: 14 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVE 65
>ROA1_MOUSE (P49312) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) (HDP-1) (Topoisomerase-inhibitor suppressed) Length = 319 Score = 42.4 bits (98), Expect = 6e-04 Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 1/76 (1%) Frame = +2 Query: 17 EPKMDRRAASHGDYDEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQ- 193 EPK RA S D + ++FVGG+ E LR+ F G+I + IM D+ Sbjct: 84 EPK---RAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRG 140 Query: 194 NGVSKGFGFVRFAERE 241 +G +GF FV F + + Sbjct: 141 SGKKRGFAFVTFDDHD 156 Score = 40.4 bits (93), Expect = 0.002 Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 1/52 (1%) Frame = +2 Query: 89 EVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGV-SKGFGFVRFAERE 241 ++F+GGL T+ +LR F G + D +M+D N S+GFGFV +A E Sbjct: 14 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVE 65
>ROA1_HUMAN (P09651) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) Length = 371 Score = 42.4 bits (98), Expect = 6e-04 Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 1/76 (1%) Frame = +2 Query: 17 EPKMDRRAASHGDYDEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQ- 193 EPK RA S D + ++FVGG+ E LR+ F G+I + IM D+ Sbjct: 84 EPK---RAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRG 140 Query: 194 NGVSKGFGFVRFAERE 241 +G +GF FV F + + Sbjct: 141 SGKKRGFAFVTFDDHD 156 Score = 40.4 bits (93), Expect = 0.002 Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 1/52 (1%) Frame = +2 Query: 89 EVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGV-SKGFGFVRFAERE 241 ++F+GGL T+ +LR F G + D +M+D N S+GFGFV +A E Sbjct: 14 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVE 65
>PPIE_DROME (Q9V3G3) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase| E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33) Length = 300 Score = 42.4 bits (98), Expect = 6e-04 Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 1/75 (1%) Frame = +2 Query: 92 VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKD-QNGVSKGFGFVRFAERECAYIAKRQK 268 ++VGGL TE L F G+I D+++ D ++ +GF F+ + + E A A Sbjct: 8 IYVGGLADEVTERLLNNAFIPFGDIADIQMPADYESQRHRGFAFIEYEQSEDAAAAIDNM 67 Query: 269 NGVELQGKRLAVDLS 313 N EL G+ + V+L+ Sbjct: 68 NDSELCGRTIRVNLA 82
>U2AF2_MOUSE (P26369) Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor| 65 kDa subunit) (U2 snRNP auxiliary factor large subunit) Length = 475 Score = 42.0 bits (97), Expect = 8e-04 Identities = 21/73 (28%), Positives = 40/73 (54%), Gaps = 1/73 (1%) Frame = +2 Query: 89 EVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQ-NGVSKGFGFVRFAERECAYIAKRQ 265 ++F+GGLP + ++E+ ++ G + ++KD G+SKG+ F + + A Sbjct: 260 KLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAG 319 Query: 266 KNGVELQGKRLAV 304 NG++L K+L V Sbjct: 320 LNGMQLGDKKLLV 332
>U2AF2_HUMAN (P26368) Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor| 65 kDa subunit) (U2 snRNP auxiliary factor large subunit) (hU2AF(65)) Length = 475 Score = 42.0 bits (97), Expect = 8e-04 Identities = 21/73 (28%), Positives = 40/73 (54%), Gaps = 1/73 (1%) Frame = +2 Query: 89 EVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQ-NGVSKGFGFVRFAERECAYIAKRQ 265 ++F+GGLP + ++E+ ++ G + ++KD G+SKG+ F + + A Sbjct: 260 KLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAG 319 Query: 266 KNGVELQGKRLAV 304 NG++L K+L V Sbjct: 320 LNGMQLGDKKLLV 332
>SART3_MOUSE (Q9JLI8) Squamous cell carcinoma antigen recognized by T-cells 3| (SART-3) (mSART-3) (Tumor-rejection antigen SART3) Length = 962 Score = 42.0 bits (97), Expect = 8e-04 Identities = 35/126 (27%), Positives = 55/126 (43%), Gaps = 21/126 (16%) Frame = +2 Query: 92 VFVGGLPRSATEGT--LREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKRQ 265 VFV LP S E LR +F CGE+V +R + G +G+ +V F E + A A Sbjct: 706 VFVSNLPYSIEEPEVKLRPLFEVCGEVVQIRPIFSNRGDFRGYCYVEFGEEKSAQQALEL 765 Query: 266 KNGVELQGKRLAV-----------------DLSLDQDTLFFGNLCKEWSAEEFEEL--IH 388 + ++G+ + V +L++ LF L + EE E++ H Sbjct: 766 DRKI-VEGRPMFVSPCVDKSKNPDFKVFRYSTTLEKHKLFISGLPFSCTKEELEDICKAH 824 Query: 389 KTFKDV 406 T KD+ Sbjct: 825 GTVKDL 830 Score = 40.8 bits (94), Expect = 0.002 Identities = 21/75 (28%), Positives = 40/75 (53%) Frame = +2 Query: 89 EVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYIAKRQK 268 ++F+ GLP S T+ L +I G + DLR++ ++ G KG +V + A A + Sbjct: 802 KLFISGLPFSCTKEELEDICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKM 861 Query: 269 NGVELQGKRLAVDLS 313 +G+ ++ + V +S Sbjct: 862 DGMTIRENVIKVAIS 876
>NOP12_YARLI (Q6C2Q7) Nucleolar protein 12| Length = 509 Score = 42.0 bits (97), Expect = 8e-04 Identities = 21/49 (42%), Positives = 32/49 (65%), Gaps = 1/49 (2%) Frame = +2 Query: 92 VFVGGLPRSATEGTLREIFSTCGEIVDLRIMKD-QNGVSKGFGFVRFAE 235 VFVG L E +L E FS+CG++ +RI++D + V KGF +V+F + Sbjct: 276 VFVGALDFEEQEESLWEAFSSCGDVEYVRIVRDPKTNVGKGFAYVQFKD 324
>RRP2_SPIOL (P82277) Plastid-specific 30S ribosomal protein 2, chloroplast| precursor (PSRP-2) Length = 260 Score = 42.0 bits (97), Expect = 8e-04 Identities = 21/74 (28%), Positives = 41/74 (55%), Gaps = 1/74 (1%) Frame = +2 Query: 89 EVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQN-GVSKGFGFVRFAERECAYIAKRQ 265 +V++G L ++ T L++ FS G+++ ++ + S GFGFV F+ E A + Sbjct: 185 KVYIGNLAKTVTNELLKDFFSEKGKVLGAKVQRTPGTSKSNGFGFVSFSSEEEVEAAIQA 244 Query: 266 KNGVELQGKRLAVD 307 N L+G+++ V+ Sbjct: 245 LNNSVLEGQKIRVN 258 Score = 39.7 bits (91), Expect = 0.004 Identities = 29/101 (28%), Positives = 47/101 (46%), Gaps = 1/101 (0%) Frame = +2 Query: 14 EEPKMDRRAASHGDYDEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKDQ 193 EE A+S D + R ++VG +PR+ LR I G I +M D+ Sbjct: 66 EETSSSSTASSSSDGEGARR------LYVGNIPRNLNNDELRTIVEEHGAIEIAEVMYDK 119 Query: 194 -NGVSKGFGFVRFAERECAYIAKRQKNGVELQGKRLAVDLS 313 +G S+ FGFV E A + N E+ G+++ V+++ Sbjct: 120 YSGRSRRFGFVTMKTVEDANAVIEKLNDTEIGGRKIKVNIT 160
>RO21_XENLA (P51989) Heterogeneous nuclear ribonucleoprotein A2 homolog 1| (hnRNP A2(A)) Length = 346 Score = 41.6 bits (96), Expect = 0.001 Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 1/76 (1%) Frame = +2 Query: 17 EPKMDRRAASHGDYDEQDRRVKGAEVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKD-Q 193 EPK RA + + + V ++FVGG+ E LRE F G+I + I+ D Q Sbjct: 80 EPK---RAVAREESAKPGAHVTVKKLFVGGIKEDTEEHHLREYFEEYGKIDSIEIITDKQ 136 Query: 194 NGVSKGFGFVRFAERE 241 +G +GF FV F + + Sbjct: 137 SGKKRGFAFVTFDDHD 152 Score = 38.5 bits (88), Expect = 0.009 Identities = 19/49 (38%), Positives = 30/49 (61%), Gaps = 1/49 (2%) Frame = +2 Query: 89 EVFVGGLPRSATEGTLREIFSTCGEIVDLRIMKD-QNGVSKGFGFVRFA 232 ++F+GGL TE +LR + G + D +M+D + S+GFGFV F+ Sbjct: 10 KLFIGGLSFETTEESLRNYYEQWGTLTDCVVMRDPASKRSRGFGFVTFS 58 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 60,765,194 Number of Sequences: 219361 Number of extensions: 1116369 Number of successful extensions: 4130 Number of sequences better than 10.0: 379 Number of HSP's better than 10.0 without gapping: 3631 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3946 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3072927439 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
