ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd2j07 |
|---|---|
| Clone Library Name | barley_pub |
>YE25_CAEEL (Q20593) Hypothetical protein F49C12.5| Length = 507 Score = 31.6 bits (70), Expect = 0.81 Identities = 21/74 (28%), Positives = 35/74 (47%) Frame = +1 Query: 175 GSARIPKRRRTTKASEAADRQLREGQFPDLNLLPVVEALNTGGSLSINEPVSHRQPPPMV 354 G++ IP + R KA + + N L +V ++N S NE H PP +V Sbjct: 34 GTSPIPVKERPLKAFITSAYYYSSSKSLGKNALALVMSINL--VKSPNELAQHPNPPELV 91 Query: 355 VSLGYETTQVVVSS 396 +S +TT ++V + Sbjct: 92 ISAENDTTSIMVKT 105
>CCDC9_MOUSE (Q8VC31) Coiled-coil domain-containing protein 9| Length = 543 Score = 30.4 bits (67), Expect = 1.8 Identities = 17/34 (50%), Positives = 19/34 (55%), Gaps = 4/34 (11%) Frame = -2 Query: 96 AGVGRSGWGWE----ERLGFGVGGRGETPRHEAS 7 AGVGR+ GWE E+L G GGRG R S Sbjct: 102 AGVGRASQGWEDGAGEQLRGGPGGRGRRGRGRGS 135
>CASC3_HUMAN (O15234) Protein CASC3 (Cancer susceptibility candidate gene 3| protein) (Metastatic lymph node protein 51) (MLN 51 protein) (Barentsz protein) (Btz) Length = 703 Score = 29.6 bits (65), Expect = 3.1 Identities = 35/94 (37%), Positives = 41/94 (43%), Gaps = 22/94 (23%) Frame = -2 Query: 216 RLGSP---SPLWNPCRTSRAHAAAMKPQA*GKPIEPPGEF--RRLAGVGR---------S 79 R GSP P WN R +++H + Q G + PP F R AG GR S Sbjct: 262 RYGSPPQRDPNWNGERLNKSH----RHQGLGGTL-PPRTFINRNAAGTGRMSAPRNYSRS 316 Query: 78 GWGWEERLGFGV-------GGR-GETPRHEASCR 1 G E R GF GGR GET +HE S R Sbjct: 317 GGFKEGRAGFRPVEAGGQHGGRSGETVKHEISYR 350
>SC5A1_SHEEP (P53791) Sodium/glucose cotransporter 1 (Na(+)/glucose| cotransporter 1) (High affinity sodium-glucose cotransporter) Length = 664 Score = 29.6 bits (65), Expect = 3.1 Identities = 11/23 (47%), Positives = 15/23 (65%) Frame = +3 Query: 132 FLKPVASSRQHELCWFCKDSKEE 200 F KP+A + LCW ++SKEE Sbjct: 547 FTKPIADVHLYRLCWSLRNSKEE 569
>CG029_HUMAN (Q96FA7) Protein C7orf29| Length = 236 Score = 29.6 bits (65), Expect = 3.1 Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 5/59 (8%) Frame = -2 Query: 282 NHWKQVQVRKLSLPKLSVCSLRRLGSPSPLWNP---C--RTSRAHAAAMKPQA*GKPIE 121 +HWKQV V K+ ++S S L SPSPL +P C T A ++ ++ ++ G+P++ Sbjct: 97 DHWKQVLVYKVKEIRVSEYS---LNSPSPLQSPRGLCVDPTRVAKSSGVEGRSQGEPLQ 152
>ATS17_HUMAN (Q8TE56) ADAMTS-17 precursor (EC 3.4.24.-) (A disintegrin and| metalloproteinase with thrombospondin motifs 17) (ADAM-TS 17) (ADAM-TS17) Length = 1095 Score = 29.6 bits (65), Expect = 3.1 Identities = 17/41 (41%), Positives = 20/41 (48%) Frame = -1 Query: 379 VWSRNPG*PP*EGAACVRQAH*WRVNPQY*VLQPLEASSGP 257 VW +PG + AA V WRV P L PL A+ GP Sbjct: 19 VWGLDPGTAVGDAAADVEVVLPWRVRPDDVHLPPLPAAPGP 59
>RR19_PORPU (P51310) Chloroplast 30S ribosomal protein S19| Length = 92 Score = 29.6 bits (65), Expect = 3.1 Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 7/70 (10%) Frame = +1 Query: 232 RQLREGQFPDLNLLPVVEALNTGGSLSINEPVSHRQP--PPMV-----VSLGYETTQVVV 390 R + +G F D++LL +EALNT G + + S P M+ V G + V V Sbjct: 3 RSIHKGPFIDVSLLTRIEALNTSGKKEVIKTWSRASTIIPDMIGHTIAVYNGKQHFPVFV 62 Query: 391 SSAAAGSNIG 420 S G +G Sbjct: 63 SDQMVGHKLG 72
>SYQ_XYLFT (Q87DU6) Glutaminyl-tRNA synthetase (EC 6.1.1.18) (Glutamine--tRNA| ligase) (GlnRS) Length = 580 Score = 29.3 bits (64), Expect = 4.0 Identities = 17/62 (27%), Positives = 31/62 (50%) Frame = +1 Query: 151 HRGSMSSAGSARIPKRRRTTKASEAADRQLREGQFPDLNLLPVVEALNTGGSLSINEPVS 330 +RG+++ AG P R R+ + RQ+R G FPD + G++++ +P Sbjct: 139 YRGTLTEAGRPS-PWRERSPDENLELFRQMRAGTFPDGTRTLRAKIDMASGNINLRDPAL 197 Query: 331 HR 336 +R Sbjct: 198 YR 199
>SYQ_XYLFA (Q9PDP1) Glutaminyl-tRNA synthetase (EC 6.1.1.18) (Glutamine--tRNA| ligase) (GlnRS) Length = 580 Score = 29.3 bits (64), Expect = 4.0 Identities = 17/62 (27%), Positives = 31/62 (50%) Frame = +1 Query: 151 HRGSMSSAGSARIPKRRRTTKASEAADRQLREGQFPDLNLLPVVEALNTGGSLSINEPVS 330 +RG+++ AG P R R+ + RQ+R G FPD + G++++ +P Sbjct: 139 YRGTLTEAGRPS-PWRERSPDENLELFRQMRAGTFPDGTRTLRAKIDMASGNINLRDPAL 197 Query: 331 HR 336 +R Sbjct: 198 YR 199
>CDH_ENTCL (Q9Z6C1) CDP-diacylglycerol pyrophosphatase (EC 3.6.1.26)| (CDP-diacylglycerol phosphatidylhydrolase) (CDP-diglyceride hydrolase) Length = 247 Score = 29.3 bits (64), Expect = 4.0 Identities = 14/36 (38%), Positives = 21/36 (58%) Frame = +2 Query: 287 HSILGVHSPLMSLSHTGSPLLWWLAWVTRPHRSWCH 394 + I G SPL++ +HT P +WLAW +R + H Sbjct: 78 YRINGTESPLLTEAHT--PNFFWLAWQSRSFMTLKH 111
>ALK_MOUSE (P97793) ALK tyrosine kinase receptor precursor (EC 2.7.10.1)| (Anaplastic lymphoma kinase) (CD246 antigen) Length = 1621 Score = 29.3 bits (64), Expect = 4.0 Identities = 11/15 (73%), Positives = 11/15 (73%) Frame = -2 Query: 75 WGWEERLGFGVGGRG 31 WGWE R GFG GG G Sbjct: 917 WGWETRGGFGGGGGG 931
>ALK_HUMAN (Q9UM73) ALK tyrosine kinase receptor precursor (EC 2.7.10.1)| (Anaplastic lymphoma kinase) (CD246 antigen) Length = 1620 Score = 29.3 bits (64), Expect = 4.0 Identities = 11/15 (73%), Positives = 11/15 (73%) Frame = -2 Query: 75 WGWEERLGFGVGGRG 31 WGWE R GFG GG G Sbjct: 913 WGWETRGGFGGGGGG 927
>CCG8_NEUCR (Q01306) Clock-controlled protein 8| Length = 661 Score = 28.9 bits (63), Expect = 5.3 Identities = 13/29 (44%), Positives = 16/29 (55%) Frame = +1 Query: 271 LPVVEALNTGGSLSINEPVSHRQPPPMVV 357 LP + +LN G SL +P QPPP V Sbjct: 176 LPSIASLNVGSSLPTLQPTPTPQPPPKFV 204
>US02_EHV1K (P32517) US1 protein| Length = 303 Score = 28.9 bits (63), Expect = 5.3 Identities = 25/65 (38%), Positives = 28/65 (43%) Frame = -2 Query: 219 RRLGSPSPLWNPCRTSRAHAAAMKPQA*GKPIEPPGEFRRLAGVGRSGWGWEERLGFGVG 40 RR S + P R SRA A A A P P G+ R A W ERL +GV Sbjct: 239 RRRPSEGGMRAPRRRSRAPAPARSTAAAATPPRP-GDPRAPAARRAGDVTWMERLLWGVF 297 Query: 39 GRGET 25 GR T Sbjct: 298 GRTST 302
>VS41_GIALA (P92127) Variant-specific surface protein VSP4A1 precursor| (CRISP-90) Length = 687 Score = 28.9 bits (63), Expect = 5.3 Identities = 12/31 (38%), Positives = 16/31 (51%) Frame = +3 Query: 171 CWFCKDSKEETDYQGVGGCRPTTSGGTVSGP 263 C C D+KE ++ +GV CR T S P Sbjct: 307 CLLCGDTKEASNDKGVANCRTCTKNANDSPP 337
>SIRT1_MOUSE (Q923E4) NAD-dependent deacetylase sirtuin-1 (EC 3.5.1.-)| (SIR2alpha) (mSIR2a) (Sir2) (SIR2-like protein 1) Length = 737 Score = 28.5 bits (62), Expect = 6.9 Identities = 16/48 (33%), Positives = 22/48 (45%) Frame = -3 Query: 311 ESEPPVLSASTTGSKFRSGNCPSRSCRSAASDALVVRLLFGILAEPAE 168 +SE VLS+S+ GS SG C S S D + + L + E Sbjct: 650 DSEDDVLSSSSCGSNSDSGTCQSPSLEEPLEDESEIEEFYNGLEDDTE 697
>UN93L_ARATH (Q94AA1) UNC93-like protein| Length = 464 Score = 28.1 bits (61), Expect = 9.0 Identities = 13/41 (31%), Positives = 22/41 (53%) Frame = -3 Query: 311 ESEPPVLSASTTGSKFRSGNCPSRSCRSAASDALVVRLLFG 189 + E P++SAS K R+G C +R + L++ L +G Sbjct: 6 DEEAPLISASGEDRKVRAGKCYTRDVHILSISFLLIFLAYG 46
>SC5A4_MOUSE (Q9ET37) Low affinity sodium-glucose cotransporter (Sodium/glucose| cotransporter 3) (Na(+)/glucose cotransporter 3) Length = 656 Score = 28.1 bits (61), Expect = 9.0 Identities = 10/21 (47%), Positives = 13/21 (61%) Frame = +3 Query: 138 KPVASSRQHELCWFCKDSKEE 200 KP+ H LCW ++SKEE Sbjct: 549 KPIPDVHLHRLCWALRNSKEE 569 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.312 0.128 0.357 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 60,509,682 Number of Sequences: 219361 Number of extensions: 1308178 Number of successful extensions: 2923 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 2836 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2922 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2336739400 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits)
