ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd2j07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1YE25_CAEEL (Q20593) Hypothetical protein F49C12.5 32 0.81
2CCDC9_MOUSE (Q8VC31) Coiled-coil domain-containing protein 9 30 1.8
3CASC3_HUMAN (O15234) Protein CASC3 (Cancer susceptibility candid... 30 3.1
4SC5A1_SHEEP (P53791) Sodium/glucose cotransporter 1 (Na(+)/gluco... 30 3.1
5CG029_HUMAN (Q96FA7) Protein C7orf29 30 3.1
6ATS17_HUMAN (Q8TE56) ADAMTS-17 precursor (EC 3.4.24.-) (A disint... 30 3.1
7RR19_PORPU (P51310) Chloroplast 30S ribosomal protein S19 30 3.1
8SYQ_XYLFT (Q87DU6) Glutaminyl-tRNA synthetase (EC 6.1.1.18) (Glu... 29 4.0
9SYQ_XYLFA (Q9PDP1) Glutaminyl-tRNA synthetase (EC 6.1.1.18) (Glu... 29 4.0
10CDH_ENTCL (Q9Z6C1) CDP-diacylglycerol pyrophosphatase (EC 3.6.1.... 29 4.0
11ALK_MOUSE (P97793) ALK tyrosine kinase receptor precursor (EC 2.... 29 4.0
12ALK_HUMAN (Q9UM73) ALK tyrosine kinase receptor precursor (EC 2.... 29 4.0
13CCG8_NEUCR (Q01306) Clock-controlled protein 8 29 5.3
14US02_EHV1K (P32517) US1 protein 29 5.3
15VS41_GIALA (P92127) Variant-specific surface protein VSP4A1 prec... 29 5.3
16SIRT1_MOUSE (Q923E4) NAD-dependent deacetylase sirtuin-1 (EC 3.5... 28 6.9
17UN93L_ARATH (Q94AA1) UNC93-like protein 28 9.0
18SC5A4_MOUSE (Q9ET37) Low affinity sodium-glucose cotransporter (... 28 9.0

>YE25_CAEEL (Q20593) Hypothetical protein F49C12.5|
          Length = 507

 Score = 31.6 bits (70), Expect = 0.81
 Identities = 21/74 (28%), Positives = 35/74 (47%)
 Frame = +1

Query: 175 GSARIPKRRRTTKASEAADRQLREGQFPDLNLLPVVEALNTGGSLSINEPVSHRQPPPMV 354
           G++ IP + R  KA   +       +    N L +V ++N     S NE   H  PP +V
Sbjct: 34  GTSPIPVKERPLKAFITSAYYYSSSKSLGKNALALVMSINL--VKSPNELAQHPNPPELV 91

Query: 355 VSLGYETTQVVVSS 396
           +S   +TT ++V +
Sbjct: 92  ISAENDTTSIMVKT 105



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>CCDC9_MOUSE (Q8VC31) Coiled-coil domain-containing protein 9|
          Length = 543

 Score = 30.4 bits (67), Expect = 1.8
 Identities = 17/34 (50%), Positives = 19/34 (55%), Gaps = 4/34 (11%)
 Frame = -2

Query: 96  AGVGRSGWGWE----ERLGFGVGGRGETPRHEAS 7
           AGVGR+  GWE    E+L  G GGRG   R   S
Sbjct: 102 AGVGRASQGWEDGAGEQLRGGPGGRGRRGRGRGS 135



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>CASC3_HUMAN (O15234) Protein CASC3 (Cancer susceptibility candidate gene 3|
           protein) (Metastatic lymph node protein 51) (MLN 51
           protein) (Barentsz protein) (Btz)
          Length = 703

 Score = 29.6 bits (65), Expect = 3.1
 Identities = 35/94 (37%), Positives = 41/94 (43%), Gaps = 22/94 (23%)
 Frame = -2

Query: 216 RLGSP---SPLWNPCRTSRAHAAAMKPQA*GKPIEPPGEF--RRLAGVGR---------S 79
           R GSP    P WN  R +++H    + Q  G  + PP  F  R  AG GR         S
Sbjct: 262 RYGSPPQRDPNWNGERLNKSH----RHQGLGGTL-PPRTFINRNAAGTGRMSAPRNYSRS 316

Query: 78  GWGWEERLGFGV-------GGR-GETPRHEASCR 1
           G   E R GF         GGR GET +HE S R
Sbjct: 317 GGFKEGRAGFRPVEAGGQHGGRSGETVKHEISYR 350



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>SC5A1_SHEEP (P53791) Sodium/glucose cotransporter 1 (Na(+)/glucose|
           cotransporter 1) (High affinity sodium-glucose
           cotransporter)
          Length = 664

 Score = 29.6 bits (65), Expect = 3.1
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +3

Query: 132 FLKPVASSRQHELCWFCKDSKEE 200
           F KP+A    + LCW  ++SKEE
Sbjct: 547 FTKPIADVHLYRLCWSLRNSKEE 569



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>CG029_HUMAN (Q96FA7) Protein C7orf29|
          Length = 236

 Score = 29.6 bits (65), Expect = 3.1
 Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 5/59 (8%)
 Frame = -2

Query: 282 NHWKQVQVRKLSLPKLSVCSLRRLGSPSPLWNP---C--RTSRAHAAAMKPQA*GKPIE 121
           +HWKQV V K+   ++S  S   L SPSPL +P   C   T  A ++ ++ ++ G+P++
Sbjct: 97  DHWKQVLVYKVKEIRVSEYS---LNSPSPLQSPRGLCVDPTRVAKSSGVEGRSQGEPLQ 152



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>ATS17_HUMAN (Q8TE56) ADAMTS-17 precursor (EC 3.4.24.-) (A disintegrin and|
           metalloproteinase with thrombospondin motifs 17)
           (ADAM-TS 17) (ADAM-TS17)
          Length = 1095

 Score = 29.6 bits (65), Expect = 3.1
 Identities = 17/41 (41%), Positives = 20/41 (48%)
 Frame = -1

Query: 379 VWSRNPG*PP*EGAACVRQAH*WRVNPQY*VLQPLEASSGP 257
           VW  +PG    + AA V     WRV P    L PL A+ GP
Sbjct: 19  VWGLDPGTAVGDAAADVEVVLPWRVRPDDVHLPPLPAAPGP 59



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>RR19_PORPU (P51310) Chloroplast 30S ribosomal protein S19|
          Length = 92

 Score = 29.6 bits (65), Expect = 3.1
 Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 7/70 (10%)
 Frame = +1

Query: 232 RQLREGQFPDLNLLPVVEALNTGGSLSINEPVSHRQP--PPMV-----VSLGYETTQVVV 390
           R + +G F D++LL  +EALNT G   + +  S      P M+     V  G +   V V
Sbjct: 3   RSIHKGPFIDVSLLTRIEALNTSGKKEVIKTWSRASTIIPDMIGHTIAVYNGKQHFPVFV 62

Query: 391 SSAAAGSNIG 420
           S    G  +G
Sbjct: 63  SDQMVGHKLG 72



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>SYQ_XYLFT (Q87DU6) Glutaminyl-tRNA synthetase (EC 6.1.1.18) (Glutamine--tRNA|
           ligase) (GlnRS)
          Length = 580

 Score = 29.3 bits (64), Expect = 4.0
 Identities = 17/62 (27%), Positives = 31/62 (50%)
 Frame = +1

Query: 151 HRGSMSSAGSARIPKRRRTTKASEAADRQLREGQFPDLNLLPVVEALNTGGSLSINEPVS 330
           +RG+++ AG    P R R+   +    RQ+R G FPD       +     G++++ +P  
Sbjct: 139 YRGTLTEAGRPS-PWRERSPDENLELFRQMRAGTFPDGTRTLRAKIDMASGNINLRDPAL 197

Query: 331 HR 336
           +R
Sbjct: 198 YR 199



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>SYQ_XYLFA (Q9PDP1) Glutaminyl-tRNA synthetase (EC 6.1.1.18) (Glutamine--tRNA|
           ligase) (GlnRS)
          Length = 580

 Score = 29.3 bits (64), Expect = 4.0
 Identities = 17/62 (27%), Positives = 31/62 (50%)
 Frame = +1

Query: 151 HRGSMSSAGSARIPKRRRTTKASEAADRQLREGQFPDLNLLPVVEALNTGGSLSINEPVS 330
           +RG+++ AG    P R R+   +    RQ+R G FPD       +     G++++ +P  
Sbjct: 139 YRGTLTEAGRPS-PWRERSPDENLELFRQMRAGTFPDGTRTLRAKIDMASGNINLRDPAL 197

Query: 331 HR 336
           +R
Sbjct: 198 YR 199



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>CDH_ENTCL (Q9Z6C1) CDP-diacylglycerol pyrophosphatase (EC 3.6.1.26)|
           (CDP-diacylglycerol phosphatidylhydrolase)
           (CDP-diglyceride hydrolase)
          Length = 247

 Score = 29.3 bits (64), Expect = 4.0
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +2

Query: 287 HSILGVHSPLMSLSHTGSPLLWWLAWVTRPHRSWCH 394
           + I G  SPL++ +HT  P  +WLAW +R   +  H
Sbjct: 78  YRINGTESPLLTEAHT--PNFFWLAWQSRSFMTLKH 111



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>ALK_MOUSE (P97793) ALK tyrosine kinase receptor precursor (EC 2.7.10.1)|
           (Anaplastic lymphoma kinase) (CD246 antigen)
          Length = 1621

 Score = 29.3 bits (64), Expect = 4.0
 Identities = 11/15 (73%), Positives = 11/15 (73%)
 Frame = -2

Query: 75  WGWEERLGFGVGGRG 31
           WGWE R GFG GG G
Sbjct: 917 WGWETRGGFGGGGGG 931



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>ALK_HUMAN (Q9UM73) ALK tyrosine kinase receptor precursor (EC 2.7.10.1)|
           (Anaplastic lymphoma kinase) (CD246 antigen)
          Length = 1620

 Score = 29.3 bits (64), Expect = 4.0
 Identities = 11/15 (73%), Positives = 11/15 (73%)
 Frame = -2

Query: 75  WGWEERLGFGVGGRG 31
           WGWE R GFG GG G
Sbjct: 913 WGWETRGGFGGGGGG 927



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>CCG8_NEUCR (Q01306) Clock-controlled protein 8|
          Length = 661

 Score = 28.9 bits (63), Expect = 5.3
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +1

Query: 271 LPVVEALNTGGSLSINEPVSHRQPPPMVV 357
           LP + +LN G SL   +P    QPPP  V
Sbjct: 176 LPSIASLNVGSSLPTLQPTPTPQPPPKFV 204



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>US02_EHV1K (P32517) US1 protein|
          Length = 303

 Score = 28.9 bits (63), Expect = 5.3
 Identities = 25/65 (38%), Positives = 28/65 (43%)
 Frame = -2

Query: 219 RRLGSPSPLWNPCRTSRAHAAAMKPQA*GKPIEPPGEFRRLAGVGRSGWGWEERLGFGVG 40
           RR  S   +  P R SRA A A    A   P  P G+ R  A        W ERL +GV 
Sbjct: 239 RRRPSEGGMRAPRRRSRAPAPARSTAAAATPPRP-GDPRAPAARRAGDVTWMERLLWGVF 297

Query: 39  GRGET 25
           GR  T
Sbjct: 298 GRTST 302



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>VS41_GIALA (P92127) Variant-specific surface protein VSP4A1 precursor|
           (CRISP-90)
          Length = 687

 Score = 28.9 bits (63), Expect = 5.3
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +3

Query: 171 CWFCKDSKEETDYQGVGGCRPTTSGGTVSGP 263
           C  C D+KE ++ +GV  CR  T     S P
Sbjct: 307 CLLCGDTKEASNDKGVANCRTCTKNANDSPP 337



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>SIRT1_MOUSE (Q923E4) NAD-dependent deacetylase sirtuin-1 (EC 3.5.1.-)|
           (SIR2alpha) (mSIR2a) (Sir2) (SIR2-like protein 1)
          Length = 737

 Score = 28.5 bits (62), Expect = 6.9
 Identities = 16/48 (33%), Positives = 22/48 (45%)
 Frame = -3

Query: 311 ESEPPVLSASTTGSKFRSGNCPSRSCRSAASDALVVRLLFGILAEPAE 168
           +SE  VLS+S+ GS   SG C S S      D   +   +  L +  E
Sbjct: 650 DSEDDVLSSSSCGSNSDSGTCQSPSLEEPLEDESEIEEFYNGLEDDTE 697



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>UN93L_ARATH (Q94AA1) UNC93-like protein|
          Length = 464

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = -3

Query: 311 ESEPPVLSASTTGSKFRSGNCPSRSCRSAASDALVVRLLFG 189
           + E P++SAS    K R+G C +R     +   L++ L +G
Sbjct: 6   DEEAPLISASGEDRKVRAGKCYTRDVHILSISFLLIFLAYG 46



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>SC5A4_MOUSE (Q9ET37) Low affinity sodium-glucose cotransporter (Sodium/glucose|
           cotransporter 3) (Na(+)/glucose cotransporter 3)
          Length = 656

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +3

Query: 138 KPVASSRQHELCWFCKDSKEE 200
           KP+     H LCW  ++SKEE
Sbjct: 549 KPIPDVHLHRLCWALRNSKEE 569


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.312    0.128    0.357 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,509,682
Number of Sequences: 219361
Number of extensions: 1308178
Number of successful extensions: 2923
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 2836
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2922
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2336739400
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
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