ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd2j07 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC006464.3| Homo sapiens BAC clone RP11-436C12 from 2, complete sequence Length = 99908 Score = 48.1 bits (24), Expect = 0.024 Identities = 24/24 (100%) Strand = Plus / Minus Query: 281 ttgaagcactcaatactgggggtt 304 |||||||||||||||||||||||| Sbjct: 77734 ttgaagcactcaatactgggggtt 77711
>gb|AY190742.1| Pagrus major 40S ribosomal protein S15A mRNA, complete cds Length = 568 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 1 tcggcacgaggcctcgtgccgc 22 |||||||||||||||||||||| Sbjct: 94 tcggcacgaggcctcgtgccgc 73 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 2 cggcacgaggcctcgtgccg 21 |||||||||||||||||||| Sbjct: 74 cggcacgaggcctcgtgccg 93
>gb|AC161231.7| Mus musculus chromosome 5, clone RP24-241P24, complete sequence Length = 193682 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 321 gcctgtctcacacaggcagccc 342 |||||||||||||||||||||| Sbjct: 1137 gcctgtctcacacaggcagccc 1116
>gb|AC161348.2| Mus musculus chromosome 5, clone RP23-393E10, complete sequence Length = 221768 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Plus Query: 321 gcctgtctcacacaggcagccc 342 |||||||||||||||||||||| Sbjct: 42274 gcctgtctcacacaggcagccc 42295
>gb|U80078.1|MMU80078 Mus musculus transcription factor BFCOL1 mRNA, complete cds Length = 2426 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Plus Query: 1 tcggcacgaggcctcgtgccgc 22 |||||||||||||||||||||| Sbjct: 5 tcggcacgaggcctcgtgccgc 26 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 2 cggcacgaggcctcgtgccg 21 |||||||||||||||||||| Sbjct: 25 cggcacgaggcctcgtgccg 6
>gb|AC134985.11| Mus musculus chromosome 5, clone RP24-432L3, complete sequence Length = 199782 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 321 gcctgtctcacacaggcagccc 342 |||||||||||||||||||||| Sbjct: 61716 gcctgtctcacacaggcagccc 61695
>ref|XM_520451.1| PREDICTED: Pan troglodytes similar to FLJ20433 protein (LOC464955), mRNA Length = 1086 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 60 gctcctcccagccccagccgctcct 84 |||||| |||||||||||||||||| Sbjct: 932 gctcctgccagccccagccgctcct 908
>gb|BT016336.1| Zea mays clone Contig169 mRNA sequence Length = 576 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1 tcggcacgaggcctcgtgccg 21 ||||||||||||||||||||| Sbjct: 575 tcggcacgaggcctcgtgccg 555 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1 tcggcacgaggcctcgtgccg 21 ||||||||||||||||||||| Sbjct: 554 tcggcacgaggcctcgtgccg 574
>gb|BT016274.1| Zea mays clone Contig107 mRNA sequence Length = 1486 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1 tcggcacgaggcctcgtgccg 21 ||||||||||||||||||||| Sbjct: 484 tcggcacgaggcctcgtgccg 464 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1 tcggcacgaggcctcgtgccg 21 ||||||||||||||||||||| Sbjct: 463 tcggcacgaggcctcgtgccg 483
>gb|BC069205.1| Homo sapiens cDNA clone IMAGE:6574528, with apparent retained intron Length = 1457 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 60 gctcctcccagccccagccgctcct 84 |||||| |||||||||||||||||| Sbjct: 1278 gctcctgccagccccagccgctcct 1254
>gb|AF499715.1| Thellungiella halophila lipid transfer protein 4-like protein mRNA, complete cds Length = 667 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1 tcggcacgaggcctcgtgccg 21 ||||||||||||||||||||| Sbjct: 25 tcggcacgaggcctcgtgccg 5 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1 tcggcacgaggcctcgtgccg 21 ||||||||||||||||||||| Sbjct: 4 tcggcacgaggcctcgtgccg 24
>gb|BC037355.1| Homo sapiens hypothetical protein FLJ20433, mRNA (cDNA clone IMAGE:4622851), complete cds Length = 993 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 60 gctcctcccagccccagccgctcct 84 |||||| |||||||||||||||||| Sbjct: 817 gctcctgccagccccagccgctcct 793
>gb|BC006248.1| Homo sapiens stromal cell-derived factor 2-like 1, mRNA (cDNA clone IMAGE:3946057) Length = 855 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 3 ggcacgaggcctcgtgccgcg 23 ||||||||||||||||||||| Sbjct: 1 ggcacgaggcctcgtgccgcg 21
>emb|BX322799.22| Human DNA sequence from clone RP13-927H1 on chromosome 9, complete sequence Length = 143968 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 60 gctcctcccagccccagccgctcct 84 |||||| |||||||||||||||||| Sbjct: 62968 gctcctgccagccccagccgctcct 62992
>gb|BC110879.1| Homo sapiens hypothetical protein FLJ20433, mRNA (cDNA clone IMAGE:6065497), complete cds Length = 997 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 60 gctcctcccagccccagccgctcct 84 |||||| |||||||||||||||||| Sbjct: 823 gctcctgccagccccagccgctcct 799
>gb|DQ118596.1| Karlodinium micrum isolate 3817 chloroplast glyceraldehyde-3-phosphate dehydrogenase mRNA, partial cds; nuclear gene for chloroplast product Length = 1358 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1 tcggcacgaggcctcgtgccg 21 ||||||||||||||||||||| Sbjct: 21 tcggcacgaggcctcgtgccg 1 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 2 cggcacgaggcctcgtgccg 21 |||||||||||||||||||| Sbjct: 1 cggcacgaggcctcgtgccg 20
>gb|DQ118594.1| Karlodinium micrum chloroplast psaE mRNA, complete cds; nuclear gene for chloroplast product Length = 1328 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1 tcggcacgaggcctcgtgccg 21 ||||||||||||||||||||| Sbjct: 716 tcggcacgaggcctcgtgccg 696 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1 tcggcacgaggcctcgtgccg 21 ||||||||||||||||||||| Sbjct: 695 tcggcacgaggcctcgtgccg 715
>dbj|AB229215.1| Aspergillus oryzae cDNA, contig sequence: AoEST6094 Length = 124 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1 tcggcacgaggcctcgtgccg 21 ||||||||||||||||||||| Sbjct: 5 tcggcacgaggcctcgtgccg 25 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 2 cggcacgaggcctcgtgccg 21 |||||||||||||||||||| Sbjct: 25 cggcacgaggcctcgtgccg 6
>dbj|AB229209.1| Aspergillus oryzae cDNA, contig sequence: AoEST6088 Length = 688 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1 tcggcacgaggcctcgtgccg 21 ||||||||||||||||||||| Sbjct: 26 tcggcacgaggcctcgtgccg 6 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1 tcggcacgaggcctcgtgccg 21 ||||||||||||||||||||| Sbjct: 5 tcggcacgaggcctcgtgccg 25
>dbj|AB226176.1| Aspergillus oryzae cDNA, contig sequence: AoEST3034 Length = 651 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1 tcggcacgaggcctcgtgccg 21 ||||||||||||||||||||| Sbjct: 100 tcggcacgaggcctcgtgccg 80 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1 tcggcacgaggcctcgtgccg 21 ||||||||||||||||||||| Sbjct: 79 tcggcacgaggcctcgtgccg 99
>dbj|AB224727.1| Aspergillus oryzae cDNA, contig sequence: AoEST1576 Length = 1145 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1 tcggcacgaggcctcgtgccg 21 ||||||||||||||||||||| Sbjct: 77 tcggcacgaggcctcgtgccg 97 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 2 cggcacgaggcctcgtgccg 21 |||||||||||||||||||| Sbjct: 97 cggcacgaggcctcgtgccg 78
>gb|AF397911.1|AF397911 Mus musculus clone IMAGE:583715 mRNA sequence Length = 1108 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1 tcggcacgaggcctcgtgccg 21 ||||||||||||||||||||| Sbjct: 24 tcggcacgaggcctcgtgccg 4 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1 tcggcacgaggcctcgtgccg 21 ||||||||||||||||||||| Sbjct: 3 tcggcacgaggcctcgtgccg 23
>gb|BC028650.1| Mus musculus coronin 7, mRNA (cDNA clone IMAGE:1068082), with apparent retained intron Length = 1214 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1 tcggcacgaggcctcgtgccg 21 ||||||||||||||||||||| Sbjct: 789 tcggcacgaggcctcgtgccg 809 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 2 cggcacgaggcctcgtgccg 21 |||||||||||||||||||| Sbjct: 809 cggcacgaggcctcgtgccg 790
>gb|AF134160.1|AF134160 Homo sapiens claudin-1 (CLDN1) mRNA, complete cds Length = 1237 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1 tcggcacgaggcctcgtgccg 21 ||||||||||||||||||||| Sbjct: 5 tcggcacgaggcctcgtgccg 25 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 2 cggcacgaggcctcgtgccg 21 |||||||||||||||||||| Sbjct: 25 cggcacgaggcctcgtgccg 6
>gb|BC033079.1| Homo sapiens, clone IMAGE:5455686, mRNA Length = 1457 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 60 gctcctcccagccccagccgctcct 84 |||||| |||||||||||||||||| Sbjct: 1278 gctcctgccagccccagccgctcct 1254
>dbj|AB159212.1| Catharanthus roseus CaUGT1 mRNA for UDP-glucose glucosyltransferase, complete cds Length = 1669 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 3 ggcacgaggcctcgtgccgcg 23 ||||||||||||||||||||| Sbjct: 1 ggcacgaggcctcgtgccgcg 21
>dbj|AB178055.1| Rana japonica GTH alpha mRNA for gonadotropin alpha-subunit, complete cds Length = 689 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1 tcggcacgaggcctcgtgccg 21 ||||||||||||||||||||| Sbjct: 25 tcggcacgaggcctcgtgccg 5 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1 tcggcacgaggcctcgtgccg 21 ||||||||||||||||||||| Sbjct: 4 tcggcacgaggcctcgtgccg 24
>dbj|AB094480.1| Mus musculus LE51 mRNA for hypothetical protein, complete cds Length = 1048 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1 tcggcacgaggcctcgtgccg 21 ||||||||||||||||||||| Sbjct: 456 tcggcacgaggcctcgtgccg 436 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1 tcggcacgaggcctcgtgccg 21 ||||||||||||||||||||| Sbjct: 435 tcggcacgaggcctcgtgccg 455
>gb|AF332963.1| Polytomella sp. Pringsheim 198.80 ferrochelatase mRNA, complete cds Length = 2227 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1 tcggcacgaggcctcgtgccg 21 ||||||||||||||||||||| Sbjct: 133 tcggcacgaggcctcgtgccg 113 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1 tcggcacgaggcctcgtgccg 21 ||||||||||||||||||||| Sbjct: 112 tcggcacgaggcctcgtgccg 132
>ref|NM_026928.1| Mus musculus RIKEN cDNA 1810014F10 gene (1810014F10Rik), mRNA Length = 1048 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1 tcggcacgaggcctcgtgccg 21 ||||||||||||||||||||| Sbjct: 456 tcggcacgaggcctcgtgccg 436 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1 tcggcacgaggcctcgtgccg 21 ||||||||||||||||||||| Sbjct: 435 tcggcacgaggcctcgtgccg 455
>gb|BC098920.2| Rattus norvegicus myosin light chain, regulatory B, mRNA (cDNA clone MGC:114341 IMAGE:7378266), complete cds Length = 997 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 60 gctcctcccagccccagccgctcct 84 |||||| |||||||||||||||||| Sbjct: 823 gctcctgccagccccagccgctcct 799
>gb|AY620960.1| Pennisetum glaucum truncated vacuolar ATPase subunit c isoform mRNA, partial cds Length = 911 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1 tcggcacgaggcctcgtgccg 21 ||||||||||||||||||||| Sbjct: 21 tcggcacgaggcctcgtgccg 1 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 2 cggcacgaggcctcgtgccg 21 |||||||||||||||||||| Sbjct: 1 cggcacgaggcctcgtgccg 20
>gb|AC102212.4| Mus musculus chromosome 8, clone RP24-374D15, complete sequence Length = 137171 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 338 agccccctcctatggtggttagcct 362 ||||| ||||||||||||||||||| Sbjct: 90982 agcccactcctatggtggttagcct 91006
>gb|AY037805.1| Oryza sativa (japonica cultivar-group) OSA15 protein mRNA, complete cds Length = 1943 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 386 tggtgtcatctgctgctgca 405 |||||||||||||||||||| Sbjct: 1573 tggtgtcatctgctgctgca 1554
>gb|AY684302.1| Sparus aurata slow troponin T 2 (sTnT2) mRNA, complete cds Length = 1020 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 tcggcacgaggcctcgtgcc 20 |||||||||||||||||||| Sbjct: 20 tcggcacgaggcctcgtgcc 1
>gb|AC105772.5| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1504_G04, complete sequence Length = 88812 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 386 tggtgtcatctgctgctgca 405 |||||||||||||||||||| Sbjct: 8769 tggtgtcatctgctgctgca 8750
>gb|AY466107.1| Oryza sativa (japonica cultivar-group) PSAG protein (PSAG) gene, complete cds Length = 4050 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 386 tggtgtcatctgctgctgca 405 |||||||||||||||||||| Sbjct: 3886 tggtgtcatctgctgctgca 3867
>gb|AY466106.1| Oryza sativa (japonica cultivar-group) PSAG protein (PSAG) mRNA, complete cds Length = 1685 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 386 tggtgtcatctgctgctgca 405 |||||||||||||||||||| Sbjct: 1521 tggtgtcatctgctgctgca 1502
>gb|DQ187323.1| Capsaspora owczarzaki Shwachman-Bodian-Diamond protein-like protein mRNA, partial cds Length = 694 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 tcggcacgaggcctcgtgcc 20 |||||||||||||||||||| Sbjct: 20 tcggcacgaggcctcgtgcc 1
>gb|AY639596.1| Salicornia herbacea tonoplast intrinsic protein gamma mRNA, complete cds Length = 1108 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 tcggcacgaggcctcgtgcc 20 |||||||||||||||||||| Sbjct: 20 tcggcacgaggcctcgtgcc 1
>gb|AC116473.13| Mus musculus chromosome 8, clone RP23-385E22, complete sequence Length = 186155 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 124 tattggctttcctcaagcct 143 |||||||||||||||||||| Sbjct: 12107 tattggctttcctcaagcct 12126
>gb|AC147618.3| Mus musculus chromosome 19 clone RP24-245M20, complete sequence Length = 172863 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 313 attaatgagcctgtctcacacagg 336 ||||||||||||| |||||||||| Sbjct: 53081 attaatgagcctgcctcacacagg 53058
>emb|AJ619759.1| Polytomella sp. Pringsheim 198.80 mitochondrial atp3 gene for ATP synthase gamma chain, mitochondrial precursor Length = 1225 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 tcggcacgaggcctcgtgcc 20 |||||||||||||||||||| Sbjct: 20 tcggcacgaggcctcgtgcc 1
>emb|BX936358.10| Zebrafish DNA sequence from clone CH211-159A10 in linkage group 3, complete sequence Length = 165674 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 391 tcatctgctgctgcagggtcaaac 414 |||||| ||||||||||||||||| Sbjct: 21953 tcatctcctgctgcagggtcaaac 21976
>emb|AJ416378.1|PSP416378 Polytomella sp. 'Pringsheim 198.80' mRNA for mitochondrial cytochrome c (cyc gene) Length = 643 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 tcggcacgaggcctcgtgcc 20 |||||||||||||||||||| Sbjct: 20 tcggcacgaggcctcgtgcc 1
>emb|AJ421017.1|GHI421017 Gossypium hirsutum mRNA for ADP-ribosylation factor (ARF1 gene) Length = 828 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 tcggcacgaggcctcgtgcc 20 |||||||||||||||||||| Sbjct: 20 tcggcacgaggcctcgtgcc 1
>gb|AY157614.1| Ficus carica chitinase mRNA, complete cds Length = 1309 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 tcggcacgaggcctcgtgcc 20 |||||||||||||||||||| Sbjct: 20 tcggcacgaggcctcgtgcc 1
>emb|AJ558193.2|PSP558193 Polytomella sp. Pringsheim 198.80 mitochondrial partial mRNA for ATP synthase associated protein MAAP67 (atpR gene) Length = 2203 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 tcggcacgaggcctcgtgcc 20 |||||||||||||||||||| Sbjct: 20 tcggcacgaggcctcgtgcc 1
>gb|AY093683.1| Suaeda maritima subsp. salsa mitogen-activated protein kinase kinase mRNA, complete cds Length = 1952 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 tcggcacgaggcctcgtgcc 20 |||||||||||||||||||| Sbjct: 20 tcggcacgaggcctcgtgcc 1
>dbj|AB230292.1| Aspergillus oryzae cDNA, contig sequence: AoEST7181 Length = 287 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 tcggcacgaggcctcgtgcc 20 |||||||||||||||||||| Sbjct: 20 tcggcacgaggcctcgtgcc 1
>dbj|AB226552.1| Aspergillus oryzae cDNA, contig sequence: AoEST3414 Length = 751 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 tcggcacgaggcctcgtgcc 20 |||||||||||||||||||| Sbjct: 4 tcggcacgaggcctcgtgcc 23
>gb|AY963297.1| Trichomonas vaginalis putative TBP-associated protein mRNA, complete cds Length = 1410 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 tcggcacgaggcctcgtgcc 20 |||||||||||||||||||| Sbjct: 20 tcggcacgaggcctcgtgcc 1
>dbj|AB077106.1| Prunus persica mRNA, microsatellite marker M1a Length = 605 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 tcggcacgaggcctcgtgcc 20 |||||||||||||||||||| Sbjct: 20 tcggcacgaggcctcgtgcc 1
>gb|AF466768.1| Mus musculus monoclonal antibody BBK-1 light chain mRNA, complete cds Length = 993 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 tcggcacgaggcctcgtgcc 20 |||||||||||||||||||| Sbjct: 20 tcggcacgaggcctcgtgcc 1
>gb|AC010444.5| Homo sapiens chromosome 5 clone CTD-2234B10, complete sequence Length = 91489 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 61 ctcctcccagccccagccgctcct 84 |||||||||||||||||| ||||| Sbjct: 77570 ctcctcccagccccagcccctcct 77547
>gb|AC155824.3| Mus musculus BAC clone RP23-136L1 from chromosome 8, complete sequence Length = 220437 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 124 tattggctttcctcaagcct 143 |||||||||||||||||||| Sbjct: 107252 tattggctttcctcaagcct 107233
>gb|AC026405.5| Homo sapiens chromosome 5 clone CTC-347N9, complete sequence Length = 168779 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 61 ctcctcccagccccagccgctcct 84 |||||||||||||||||| ||||| Sbjct: 18856 ctcctcccagccccagcccctcct 18833
>gb|AC016779.5| Genomic sequence for Oryza sativa clone 10N6, complete sequence Length = 140234 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 386 tggtgtcatctgctgctgca 405 |||||||||||||||||||| Sbjct: 129805 tggtgtcatctgctgctgca 129824
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 386 tggtgtcatctgctgctgca 405 |||||||||||||||||||| Sbjct: 2730443 tggtgtcatctgctgctgca 2730424
>dbj|AB189027.1| Plutella xylostella mRNA for receptor for activated protein kinase C homolog, complete cds Length = 1132 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 tcggcacgaggcctcgtgcc 20 |||||||||||||||||||| Sbjct: 20 tcggcacgaggcctcgtgcc 1
>dbj|AB180672.1| Plutella xylostella mRNA for ribosomal protein S23, complete cds Length = 615 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 tcggcacgaggcctcgtgcc 20 |||||||||||||||||||| Sbjct: 20 tcggcacgaggcctcgtgcc 1
>dbj|AB180671.1| Plutella xylostella mRNA for ribosomal protein S9, complete cds Length = 709 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 tcggcacgaggcctcgtgcc 20 |||||||||||||||||||| Sbjct: 20 tcggcacgaggcctcgtgcc 1
>dbj|AB180450.1| Plutella xylostella mRNA for cellular retinoic acid binding protein, complete cds Length = 806 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 tcggcacgaggcctcgtgcc 20 |||||||||||||||||||| Sbjct: 20 tcggcacgaggcctcgtgcc 1
>dbj|AB180430.1| Plutella xylostella mRNA for Ribosomal protein L37A, complete cds Length = 353 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 tcggcacgaggcctcgtgcc 20 |||||||||||||||||||| Sbjct: 20 tcggcacgaggcctcgtgcc 1
>dbj|AB180425.1| Plutella xylostella mRNA for Ribosomal protein S28, complete cds Length = 437 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 tcggcacgaggcctcgtgcc 20 |||||||||||||||||||| Sbjct: 20 tcggcacgaggcctcgtgcc 1
>dbj|AB180424.1| Plutella xylostella mRNA for Ribosomal protein L21, complete cds Length = 549 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 tcggcacgaggcctcgtgcc 20 |||||||||||||||||||| Sbjct: 20 tcggcacgaggcctcgtgcc 1
>dbj|AB180417.1| Plutella xylostella mRNA for Ribosomal protein S29, complete cds Length = 472 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 tcggcacgaggcctcgtgcc 20 |||||||||||||||||||| Sbjct: 20 tcggcacgaggcctcgtgcc 1
>dbj|AK104683.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-036-A07, full insert sequence Length = 1410 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 386 tggtgtcatctgctgctgca 405 |||||||||||||||||||| Sbjct: 1167 tggtgtcatctgctgctgca 1148
>dbj|AK069108.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023008A06, full insert sequence Length = 1883 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 386 tggtgtcatctgctgctgca 405 |||||||||||||||||||| Sbjct: 1573 tggtgtcatctgctgctgca 1554
>emb|CR792434.8| Zebrafish DNA sequence from clone CH211-219O9 in linkage group 3, complete sequence Length = 69225 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 391 tcatctgctgctgcagggtcaaac 414 |||||| ||||||||||||||||| Sbjct: 66942 tcatctcctgctgcagggtcaaac 66919
>gb|AC134607.5| Mus musculus BAC clone RP23-65J2 from chromosome 9, complete sequence Length = 230480 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 388 gtgtcatctgctgctgcagggtca 411 ||||||||||||| |||||||||| Sbjct: 68424 gtgtcatctgctgatgcagggtca 68401
>gb|AC149584.4| Mus musculus BAC clone RP24-298L13 from 8, complete sequence Length = 182904 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 302 gttcactctccattaatgag 321 |||||||||||||||||||| Sbjct: 117407 gttcactctccattaatgag 117426
>gb|AC140929.4| Mus musculus BAC clone RP23-258I3 from 8, complete sequence Length = 221905 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 302 gttcactctccattaatgag 321 |||||||||||||||||||| Sbjct: 10360 gttcactctccattaatgag 10341
>emb|AJ420446.1|HSA420446 Homo sapiens mRNA full length insert cDNA clone EUROIMAGE 1646617 Length = 778 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 tcggcacgaggcctcgtgcc 20 |||||||||||||||||||| Sbjct: 20 tcggcacgaggcctcgtgcc 1
>dbj|AB028136.1| Gallus gallus prkdc gene for DNA-dependent protein kinase catalytic subunit, complete cds Length = 84265 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 261 cctgaacttgcttccagtgg 280 |||||||||||||||||||| Sbjct: 45363 cctgaacttgcttccagtgg 45344 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,293,407 Number of Sequences: 3902068 Number of extensions: 3293407 Number of successful extensions: 63384 Number of sequences better than 10.0: 75 Number of HSP's better than 10.0 without gapping: 75 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 63225 Number of HSP's gapped (non-prelim): 159 length of query: 427 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 405 effective length of database: 17,147,199,772 effective search space: 6944615907660 effective search space used: 6944615907660 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
