Clone Name | basd2j03 |
---|---|
Clone Library Name | barley_pub |
>ABFA_STRLI (P53627) Alpha-N-arabinofuranosidase (EC 3.2.1.55) (Arabinosidase)| (ABF) (Alpha-L-AF) Length = 662 Score = 35.4 bits (80), Expect = 0.077 Identities = 19/44 (43%), Positives = 25/44 (56%) Frame = -1 Query: 210 TPRFSPPSLTAAARSDQTSHRSAAREARPRGTDGSNLVRRPGGR 79 TP +PPS ++A R D T+ RS R AR R + + R P GR Sbjct: 521 TPPAAPPSSSSAPRPDPTARRSPDRTARARVLAAARVRRMPFGR 564
>DIG1_CAEEL (Q09165) Mesocentin precursor| Length = 13100 Score = 32.0 bits (71), Expect = 0.85 Identities = 19/57 (33%), Positives = 27/57 (47%) Frame = -3 Query: 247 ARRGSPLPLSQIDSALLSAVPNGCRALRSDEPPVGGEGSASAGNRRIEPRETAGRTD 77 AR G P+ L SAV + SD PP+G E G++ +E ++AG D Sbjct: 1698 AREGPPVELRVEPDGQRSAVAQWKEPVTSDVPPIGYEIYYVRGDKSVEEDDSAGLND 1754
>NIRQ_PSEST (Q02441) Denitrification regulatory protein nirQ| Length = 275 Score = 31.2 bits (69), Expect = 1.4 Identities = 15/50 (30%), Positives = 24/50 (48%) Frame = +3 Query: 108 IRRFPADALPSPPTGGSSDRSARQPLGTAERSAESI*ERGRGEPLRAPVG 257 +R P +A+ P T G+ D QPLG E+ + + G ++ P G Sbjct: 1 MRYLPVNAIEIPTTAGTPDAPFYQPLGNEEQLFQQAWQHGMPVLIKGPTG 50
>UL61_HCMVA (P16818) Hypothetical protein UL61| Length = 431 Score = 30.4 bits (67), Expect = 2.5 Identities = 13/31 (41%), Positives = 19/31 (61%) Frame = +1 Query: 16 APSLPSPXQISPRLDQQPQPDPSARPSHEVR 108 AP+LP P + P ++P P PS RP++ R Sbjct: 149 APNLPGPIAVEP--GRRPSPPPSTRPTYRRR 177
>LIPA3_MOUSE (P60469) Liprin-alpha-3 (Protein tyrosine phosphatase receptor type| f polypeptide-interacting protein alpha-3) (PTPRF-interacting protein alpha-3) Length = 1043 Score = 30.0 bits (66), Expect = 3.2 Identities = 17/38 (44%), Positives = 21/38 (55%) Frame = -1 Query: 231 PSLSLRSTPRFSPPSLTAAARSDQTSHRSAAREARPRG 118 P S STPR +PPS A +D+T+H S PRG Sbjct: 518 PPSSGHSTPRLAPPS-PAREGTDKTNHVSKEEAGVPRG 554
>RNH_RHILO (Q985W1) Ribonuclease H (EC 3.1.26.4) (RNase H)| Length = 177 Score = 30.0 bits (66), Expect = 3.2 Identities = 14/38 (36%), Positives = 21/38 (55%) Frame = -2 Query: 353 RCCEMTRVSMAPGRKRQIEPSPSGSAPDEQIETDGSTK 240 R E+ R MAP +K +P+ S PD Q++ +TK Sbjct: 132 RADELAREGMAPFKKGSFKPAASAPKPDAQLKQPVATK 169
>ADCY9_XENLA (P98999) Adenylate cyclase type 9 (EC 4.6.1.1) (Adenylate cyclase| type IX) (ATP pyrophosphate-lyase 9) (Adenylyl cyclase 9) (xlAC) Length = 1305 Score = 29.6 bits (65), Expect = 4.2 Identities = 19/43 (44%), Positives = 21/43 (48%) Frame = +3 Query: 102 GSIRRFPADALPSPPTGGSSDRSARQPLGTAERSAESI*ERGR 230 GSI R P D + S TGG + G AER E ERGR Sbjct: 1260 GSIGRSPTDEISSLVTGGKG--AVELGSGEAERKREKAEERGR 1300
>IE18_PRVKA (P33479) Immediate-early protein IE180| Length = 1446 Score = 28.9 bits (63), Expect = 7.2 Identities = 18/38 (47%), Positives = 22/38 (57%), Gaps = 1/38 (2%) Frame = -1 Query: 249 EHEGVRPSLSL-RSTPRFSPPSLTAAARSDQTSHRSAA 139 E EGVRP L R+ P SPP+ AA R +S S+A Sbjct: 401 EDEGVRPGAPLARAGPPPSPPAPAAAPRPSASSASSSA 438
>P3C2A_PONPY (Q5RAY1) Phosphatidylinositol-4-phosphate 3-kinase C2| domain-containing alpha polypeptide (EC 2.7.1.154) (Phosphoinositide 3-Kinase-C2-alpha) (PtdIns-3-kinase C2 alpha) (PI3K-C2alpha) Length = 1685 Score = 28.9 bits (63), Expect = 7.2 Identities = 12/30 (40%), Positives = 17/30 (56%) Frame = -3 Query: 325 WRPVVSGRSNQALPDLHPTNRSKPTGARRG 236 W P +SG S ALP ++P+ SK + G Sbjct: 142 WPPGLSGPSTYALPSIYPSTYSKQAAFQNG 171
>CRYD_NATPD (Q3IPX9) Cryptochrome DASH| Length = 474 Score = 28.9 bits (63), Expect = 7.2 Identities = 24/76 (31%), Positives = 33/76 (43%) Frame = -3 Query: 331 SPWRPVVSGRSNQALPDLHPTNRSKPTGARRGSPLPLSQIDSALLSAVPNGCRALRSDEP 152 +PWR + P P P G +P P+ ++S +S P RA+ E Sbjct: 154 TPWRKETEAAATVRDPRSAPETVPTPDGL---TPGPVPTVESLGVSEPPTDDRAVLEFE- 209 Query: 151 PVGGEGSASAGNRRIE 104 GGE SAG RR+E Sbjct: 210 --GGE---SAGKRRVE 220
>CASR_BOVIN (P35384) Extracellular calcium-sensing receptor precursor (CaSR)| (Parathyroid Cell calcium-sensing receptor) Length = 1085 Score = 28.9 bits (63), Expect = 7.2 Identities = 12/28 (42%), Positives = 16/28 (57%) Frame = +1 Query: 28 PSPXQISPRLDQQPQPDPSARPSHEVRS 111 P P +SP QQPQP P + P + +S Sbjct: 936 PQPLALSPHNAQQPQPRPPSTPQPQPQS 963
>AREA_PENCH (Q01582) Nitrogen regulatory protein areA (Nitrogen regulator nre)| Length = 725 Score = 28.9 bits (63), Expect = 7.2 Identities = 11/21 (52%), Positives = 17/21 (80%) Frame = -2 Query: 332 VSMAPGRKRQIEPSPSGSAPD 270 V +AP R+R++E +P+GS PD Sbjct: 652 VQVAPRRQRRLEKAPAGSEPD 672
>LRRC7_HUMAN (Q96NW7) Leucine-rich repeat-containing protein 7 (LAP1 protein)| (Densin-180) Length = 1537 Score = 28.5 bits (62), Expect = 9.4 Identities = 14/36 (38%), Positives = 16/36 (44%) Frame = +1 Query: 1 FGTRIAPSLPSPXQISPRLDQQPQPDPSARPSHEVR 108 +G RIAPS P P P L Q+ P P R Sbjct: 722 WGNRIAPSFPQPLDSKPLLSQREAVPPGNIPQRPDR 757
>IE18_PRVIF (P11675) Immediate-early protein IE180| Length = 1461 Score = 28.5 bits (62), Expect = 9.4 Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 1/65 (1%) Frame = -1 Query: 321 ARS*AADRTKPFXXXXXXXXXXXREHEGVRPSLSL-RSTPRFSPPSLTAAARSDQTSHRS 145 AR A+ + E EGVRP L R+ P SPP+ AA R +S + Sbjct: 385 ARRSASSSSSSSSSSSSSSSSEGEEDEGVRPGAPLARAGPPPSPPAPAAAPRPSASSASA 444 Query: 144 AAREA 130 + A Sbjct: 445 TSSSA 449
>LIPA3_RAT (Q91Z79) Liprin-alpha-3 (Protein tyrosine phosphatase receptor type| f polypeptide-interacting protein alpha-3) (PTPRF-interacting protein alpha-3) Length = 1192 Score = 28.5 bits (62), Expect = 9.4 Identities = 16/38 (42%), Positives = 20/38 (52%) Frame = -1 Query: 231 PSLSLRSTPRFSPPSLTAAARSDQTSHRSAAREARPRG 118 P S STPR +PPS A +D+T+H PRG Sbjct: 668 PPSSGHSTPRLAPPS--PARETDKTNHVPKDEAGVPRG 703
>CAC1I_RAT (Q9Z0Y8) Voltage-dependent T-type calcium channel alpha-1I subunit| (Voltage-gated calcium channel alpha subunit Cav3.3) (CaVT.3) Length = 2201 Score = 28.5 bits (62), Expect = 9.4 Identities = 24/59 (40%), Positives = 26/59 (44%), Gaps = 5/59 (8%) Frame = -1 Query: 249 EHEGVRPSLSLRST----PRFSPPSLTAAARSDQTSHRSAAREARPRGT-DGSNLVRRP 88 EH SLSL S P PP LT A + + TS AA RP T LVR P Sbjct: 2101 EHSETLSSLSLTSLFCLPPTLPPPGLTPARKFNSTS-SLAAGPGRPGSTVSARGLVRSP 2158
>SYYC_MOUSE (Q91WQ3) Tyrosyl-tRNA synthetase, cytoplasmic (EC 6.1.1.1)| (Tyrosyl--tRNA ligase) (TyrRS) Length = 527 Score = 28.5 bits (62), Expect = 9.4 Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 2/29 (6%) Frame = -2 Query: 317 GRKRQIEP--SPSGSAPDEQIETDGSTKG 237 G RQ+EP P+GSAP E++ G KG Sbjct: 446 GVSRQVEPLDPPAGSAPGERVFVQGYEKG 474
>OXA1L_ARATH (Q9SKD3) Inner membrane protein OXA1-like, mitochondrial precursor| Length = 431 Score = 28.5 bits (62), Expect = 9.4 Identities = 19/61 (31%), Positives = 31/61 (50%) Frame = -3 Query: 289 LPDLHPTNRSKPTGARRGSPLPLSQIDSALLSAVPNGCRALRSDEPPVGGEGSASAGNRR 110 LPD+ ++ +P+ + SPLP S A P + ++PP+ E S+S +RR Sbjct: 357 LPDVVNSSTRQPSPS---SPLPFS-------FAEPKDQSVVAQEKPPMSSESSSSVPDRR 406 Query: 109 I 107 I Sbjct: 407 I 407
>HAP1_HUMAN (P54257) Huntingtin-associated protein 1 (HAP-1) (Neuroan 1)| Length = 671 Score = 28.5 bits (62), Expect = 9.4 Identities = 11/30 (36%), Positives = 17/30 (56%) Frame = +1 Query: 4 GTRIAPSLPSPXQISPRLDQQPQPDPSARP 93 G+R+ P P+ +P P P+PSA+P Sbjct: 12 GSRLGPGDPAALTCAPSPSASPAPEPSAQP 41
>AREA_PENRO (O13508) Nitrogen regulatory protein areA (Nitrogen regulator nmc)| Length = 860 Score = 28.5 bits (62), Expect = 9.4 Identities = 11/21 (52%), Positives = 17/21 (80%) Frame = -2 Query: 332 VSMAPGRKRQIEPSPSGSAPD 270 V +AP R+R++E +P+GS PD Sbjct: 787 VQVAPRRQRRLEKAPTGSDPD 807 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 54,047,813 Number of Sequences: 219361 Number of extensions: 969936 Number of successful extensions: 4593 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 4033 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4531 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3188886965 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)