>ABFA_STRLI (P53627) Alpha-N-arabinofuranosidase (EC 3.2.1.55) (Arabinosidase)|
           (ABF) (Alpha-L-AF)
          Length = 662

 Score = 35.4 bits (80), Expect = 0.077
 Identities = 19/44 (43%), Positives = 25/44 (56%)
 Frame = -1

Query: 210 TPRFSPPSLTAAARSDQTSHRSAAREARPRGTDGSNLVRRPGGR 79
           TP  +PPS ++A R D T+ RS  R AR R    + + R P GR
Sbjct: 521 TPPAAPPSSSSAPRPDPTARRSPDRTARARVLAAARVRRMPFGR 564

>DIG1_CAEEL (Q09165) Mesocentin precursor|
          Length = 13100

 Score = 32.0 bits (71), Expect = 0.85
 Identities = 19/57 (33%), Positives = 27/57 (47%)
 Frame = -3

Query: 247  ARRGSPLPLSQIDSALLSAVPNGCRALRSDEPPVGGEGSASAGNRRIEPRETAGRTD 77
            AR G P+ L        SAV      + SD PP+G E     G++ +E  ++AG  D
Sbjct: 1698 AREGPPVELRVEPDGQRSAVAQWKEPVTSDVPPIGYEIYYVRGDKSVEEDDSAGLND 1754

>NIRQ_PSEST (Q02441) Denitrification regulatory protein nirQ|
          Length = 275

 Score = 31.2 bits (69), Expect = 1.4
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = +3

Query: 108 IRRFPADALPSPPTGGSSDRSARQPLGTAERSAESI*ERGRGEPLRAPVG 257
           +R  P +A+  P T G+ D    QPLG  E+  +   + G    ++ P G
Sbjct: 1   MRYLPVNAIEIPTTAGTPDAPFYQPLGNEEQLFQQAWQHGMPVLIKGPTG 50

>UL61_HCMVA (P16818) Hypothetical protein UL61|
          Length = 431

 Score = 30.4 bits (67), Expect = 2.5
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +1

Query: 16  APSLPSPXQISPRLDQQPQPDPSARPSHEVR 108
           AP+LP P  + P   ++P P PS RP++  R
Sbjct: 149 APNLPGPIAVEP--GRRPSPPPSTRPTYRRR 177

>LIPA3_MOUSE (P60469) Liprin-alpha-3 (Protein tyrosine phosphatase receptor type|
           f polypeptide-interacting protein alpha-3)
           (PTPRF-interacting protein alpha-3)
          Length = 1043

 Score = 30.0 bits (66), Expect = 3.2
 Identities = 17/38 (44%), Positives = 21/38 (55%)
 Frame = -1

Query: 231 PSLSLRSTPRFSPPSLTAAARSDQTSHRSAAREARPRG 118
           P  S  STPR +PPS  A   +D+T+H S      PRG
Sbjct: 518 PPSSGHSTPRLAPPS-PAREGTDKTNHVSKEEAGVPRG 554

>RNH_RHILO (Q985W1) Ribonuclease H (EC 3.1.26.4) (RNase H)|
          Length = 177

 Score = 30.0 bits (66), Expect = 3.2
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -2

Query: 353 RCCEMTRVSMAPGRKRQIEPSPSGSAPDEQIETDGSTK 240
           R  E+ R  MAP +K   +P+ S   PD Q++   +TK
Sbjct: 132 RADELAREGMAPFKKGSFKPAASAPKPDAQLKQPVATK 169

>ADCY9_XENLA (P98999) Adenylate cyclase type 9 (EC 4.6.1.1) (Adenylate cyclase|
            type IX) (ATP pyrophosphate-lyase 9) (Adenylyl cyclase 9)
            (xlAC)
          Length = 1305

 Score = 29.6 bits (65), Expect = 4.2
 Identities = 19/43 (44%), Positives = 21/43 (48%)
 Frame = +3

Query: 102  GSIRRFPADALPSPPTGGSSDRSARQPLGTAERSAESI*ERGR 230
            GSI R P D + S  TGG    +     G AER  E   ERGR
Sbjct: 1260 GSIGRSPTDEISSLVTGGKG--AVELGSGEAERKREKAEERGR 1300

>IE18_PRVKA (P33479) Immediate-early protein IE180|
          Length = 1446

 Score = 28.9 bits (63), Expect = 7.2
 Identities = 18/38 (47%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = -1

Query: 249 EHEGVRPSLSL-RSTPRFSPPSLTAAARSDQTSHRSAA 139
           E EGVRP   L R+ P  SPP+  AA R   +S  S+A
Sbjct: 401 EDEGVRPGAPLARAGPPPSPPAPAAAPRPSASSASSSA 438

>P3C2A_PONPY (Q5RAY1) Phosphatidylinositol-4-phosphate 3-kinase C2|
           domain-containing alpha polypeptide (EC 2.7.1.154)
           (Phosphoinositide 3-Kinase-C2-alpha) (PtdIns-3-kinase C2
           alpha) (PI3K-C2alpha)
          Length = 1685

 Score = 28.9 bits (63), Expect = 7.2
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -3

Query: 325 WRPVVSGRSNQALPDLHPTNRSKPTGARRG 236
           W P +SG S  ALP ++P+  SK    + G
Sbjct: 142 WPPGLSGPSTYALPSIYPSTYSKQAAFQNG 171

>CRYD_NATPD (Q3IPX9) Cryptochrome DASH|
          Length = 474

 Score = 28.9 bits (63), Expect = 7.2
 Identities = 24/76 (31%), Positives = 33/76 (43%)
 Frame = -3

Query: 331 SPWRPVVSGRSNQALPDLHPTNRSKPTGARRGSPLPLSQIDSALLSAVPNGCRALRSDEP 152
           +PWR      +    P   P     P G    +P P+  ++S  +S  P   RA+   E 
Sbjct: 154 TPWRKETEAAATVRDPRSAPETVPTPDGL---TPGPVPTVESLGVSEPPTDDRAVLEFE- 209

Query: 151 PVGGEGSASAGNRRIE 104
             GGE   SAG RR+E
Sbjct: 210 --GGE---SAGKRRVE 220

>CASR_BOVIN (P35384) Extracellular calcium-sensing receptor precursor (CaSR)|
            (Parathyroid Cell calcium-sensing receptor)
          Length = 1085

 Score = 28.9 bits (63), Expect = 7.2
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +1

Query: 28   PSPXQISPRLDQQPQPDPSARPSHEVRS 111
            P P  +SP   QQPQP P + P  + +S
Sbjct: 936  PQPLALSPHNAQQPQPRPPSTPQPQPQS 963

>AREA_PENCH (Q01582) Nitrogen regulatory protein areA (Nitrogen regulator nre)|
          Length = 725

 Score = 28.9 bits (63), Expect = 7.2
 Identities = 11/21 (52%), Positives = 17/21 (80%)
 Frame = -2

Query: 332 VSMAPGRKRQIEPSPSGSAPD 270
           V +AP R+R++E +P+GS PD
Sbjct: 652 VQVAPRRQRRLEKAPAGSEPD 672

>LRRC7_HUMAN (Q96NW7) Leucine-rich repeat-containing protein 7 (LAP1 protein)|
           (Densin-180)
          Length = 1537

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 14/36 (38%), Positives = 16/36 (44%)
 Frame = +1

Query: 1   FGTRIAPSLPSPXQISPRLDQQPQPDPSARPSHEVR 108
           +G RIAPS P P    P L Q+    P   P    R
Sbjct: 722 WGNRIAPSFPQPLDSKPLLSQREAVPPGNIPQRPDR 757

>IE18_PRVIF (P11675) Immediate-early protein IE180|
          Length = 1461

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
 Frame = -1

Query: 321 ARS*AADRTKPFXXXXXXXXXXXREHEGVRPSLSL-RSTPRFSPPSLTAAARSDQTSHRS 145
           AR  A+  +               E EGVRP   L R+ P  SPP+  AA R   +S  +
Sbjct: 385 ARRSASSSSSSSSSSSSSSSSEGEEDEGVRPGAPLARAGPPPSPPAPAAAPRPSASSASA 444

Query: 144 AAREA 130
            +  A
Sbjct: 445 TSSSA 449

>LIPA3_RAT (Q91Z79) Liprin-alpha-3 (Protein tyrosine phosphatase receptor type|
           f polypeptide-interacting protein alpha-3)
           (PTPRF-interacting protein alpha-3)
          Length = 1192

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 16/38 (42%), Positives = 20/38 (52%)
 Frame = -1

Query: 231 PSLSLRSTPRFSPPSLTAAARSDQTSHRSAAREARPRG 118
           P  S  STPR +PPS   A  +D+T+H        PRG
Sbjct: 668 PPSSGHSTPRLAPPS--PARETDKTNHVPKDEAGVPRG 703

>CAC1I_RAT (Q9Z0Y8) Voltage-dependent T-type calcium channel alpha-1I subunit|
            (Voltage-gated calcium channel alpha subunit Cav3.3)
            (CaVT.3)
          Length = 2201

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 24/59 (40%), Positives = 26/59 (44%), Gaps = 5/59 (8%)
 Frame = -1

Query: 249  EHEGVRPSLSLRST----PRFSPPSLTAAARSDQTSHRSAAREARPRGT-DGSNLVRRP 88
            EH     SLSL S     P   PP LT A + + TS   AA   RP  T     LVR P
Sbjct: 2101 EHSETLSSLSLTSLFCLPPTLPPPGLTPARKFNSTS-SLAAGPGRPGSTVSARGLVRSP 2158

>SYYC_MOUSE (Q91WQ3) Tyrosyl-tRNA synthetase, cytoplasmic (EC 6.1.1.1)|
           (Tyrosyl--tRNA ligase) (TyrRS)
          Length = 527

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
 Frame = -2

Query: 317 GRKRQIEP--SPSGSAPDEQIETDGSTKG 237
           G  RQ+EP   P+GSAP E++   G  KG
Sbjct: 446 GVSRQVEPLDPPAGSAPGERVFVQGYEKG 474

>OXA1L_ARATH (Q9SKD3) Inner membrane protein OXA1-like, mitochondrial precursor|
          Length = 431

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 19/61 (31%), Positives = 31/61 (50%)
 Frame = -3

Query: 289 LPDLHPTNRSKPTGARRGSPLPLSQIDSALLSAVPNGCRALRSDEPPVGGEGSASAGNRR 110
           LPD+  ++  +P+ +   SPLP S        A P     +  ++PP+  E S+S  +RR
Sbjct: 357 LPDVVNSSTRQPSPS---SPLPFS-------FAEPKDQSVVAQEKPPMSSESSSSVPDRR 406

Query: 109 I 107
           I
Sbjct: 407 I 407

>HAP1_HUMAN (P54257) Huntingtin-associated protein 1 (HAP-1) (Neuroan 1)|
          Length = 671

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +1

Query: 4   GTRIAPSLPSPXQISPRLDQQPQPDPSARP 93
           G+R+ P  P+    +P     P P+PSA+P
Sbjct: 12  GSRLGPGDPAALTCAPSPSASPAPEPSAQP 41

>AREA_PENRO (O13508) Nitrogen regulatory protein areA (Nitrogen regulator nmc)|
          Length = 860

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 11/21 (52%), Positives = 17/21 (80%)
 Frame = -2

Query: 332 VSMAPGRKRQIEPSPSGSAPD 270
           V +AP R+R++E +P+GS PD
Sbjct: 787 VQVAPRRQRRLEKAPTGSDPD 807


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,047,813
Number of Sequences: 219361
Number of extensions: 969936
Number of successful extensions: 4593
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 4033
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4531
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3188886965
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)