No.
Definition
Score (bits)
E Value
1 dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D...
109
7e-21
2 dbj|AP003328.3| Oryza sativa (japonica cultivar-group) genomic D...
109
7e-21
3 dbj|AP002843.2| Oryza sativa (japonica cultivar-group) genomic D...
109
7e-21
4 dbj|AK060239.1| Oryza sativa (japonica cultivar-group) cDNA clon...
109
7e-21
5 ref|NM_116336.2| Arabidopsis thaliana DNA binding / transcriptio...
52
0.001
6 ref|NM_001036490.1| Arabidopsis thaliana DNA binding / transcrip...
52
0.001
7 ref|NM_202764.1| Arabidopsis thaliana DNA binding / transcriptio...
52
0.001
8 gb|AY519522.1| Arabidopsis thaliana MYB transcription factor (At...
52
0.001
9 emb|BX828755.1|CNS0A2LX Arabidopsis thaliana Full-length cDNA Co...
52
0.001
10 gb|BT005611.1| Arabidopsis thaliana clone U50786 putative myb fa...
52
0.001
11 dbj|AK118043.1| Arabidopsis thaliana mRNA for unknown protein, c...
52
0.001
12 emb|BX826597.1|CNS0A37B Arabidopsis thaliana Full-length cDNA Co...
48
0.023
13 emb|AL161491.2|ATCHRIV3 Arabidopsis thaliana DNA chromosome 4, c...
44
0.37
14 gb|AF007269.1|IG002N01 Arabidopsis thaliana BAC IG002N01
44
0.37
15 ref|NM_025729.3| Mus musculus RIKEN cDNA 4921526G09 gene (492152...
42
1.4
16 ref|XM_390467.1| Gibberella zeae PH-1 chromosome 1 hypothetical ...
42
1.4
17 gb|AC158747.3| Mus musculus chromosome 15, clone RP24-248P22, co...
42
1.4
18 dbj|AK220185.1| Mus musculus mRNA for mKIAA4135 protein
42
1.4
19 emb|BX470157.6| Zebrafish DNA sequence from clone CH211-119P14 i...
42
1.4
20 emb|BX530085.3| Zebrafish DNA sequence from clone DKEY-18A21 in ...
42
1.4
21 ref|XM_696979.1| PREDICTED: Danio rerio hypothetical protein LOC...
42
1.4
22 dbj|AK041800.1| Mus musculus 3 days neonate thymus cDNA, RIKEN f...
42
1.4
23 dbj|AK048222.1| Mus musculus 16 days embryo head cDNA, RIKEN ful...
42
1.4
24 gb|BC044423.1| Danio rerio Nedd4 family interacting protein 1, m...
42
1.4
25 gb|AC105969.17| Mus musculus chromosome 15, clone RP23-477B23, c...
42
1.4
26 ref|NM_199666.1| Danio rerio Nedd4 family interacting protein 1 ...
42
1.4
27 emb|AL645567.7| Mouse DNA sequence from clone RP23-181A7 on chro...
42
1.4
28 ref|XM_642468.1| Dictyostelium discoideum hypothetical protein (...
40
5.7
29 emb|AL032649.1|CEY55D9A Caenorhabditis elegans YAC Y55D9A, compl...
40
5.7
30 emb|Z92542.2|HS245G19 Human DNA sequence from clone RP1-245G19 o...
40
5.7
31 emb|AL357123.11| Human DNA sequence from clone RP11-287E6 on chr...
40
5.7
32 emb|AL137026.21| Human DNA sequence from clone RP11-20J15 on chr...
40
5.7
33 emb|X65054.1|CEPGPAG C.elegans cepgpA gene for P-glycoprotein A
40
5.7
34 emb|X57841.1|SSSPAGEN S.sobrinus spaA gene for antigen I/II
40
5.7
35 emb|BX294164.13| Zebrafish DNA sequence from clone CH211-266D19 ...
40
5.7
36 emb|BX821764.1|CNS0AA9S Arabidopsis thaliana Full-length cDNA Co...
40
5.7
37 emb|CT025634.2| Pan troglodytes chromosome X clone PTB-037N22 ma...
40
5.7
>dbj|AP008207.1 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 109 bits (55), Expect = 7e-21
Identities = 73/79 (92%)
Strand = Plus / Minus
Query: 228 caggtgggaacttatagctggaagaatccccggaagaacagcagaagaagtagagatgtt 287
|||||||||||||||||||||||||||||| |||||||||||| |||| ||||| |||||
Sbjct: 24692908 caggtgggaacttatagctggaagaatccctggaagaacagcaaaagaggtagaaatgtt 24692849
Query: 288 ctgggcaaaaaagcaccag 306
||||||| ||||||||||
Sbjct: 24692848 ctgggcagtaaagcaccag 24692830
Score = 101 bits (51), Expect = 2e-18
Identities = 60/63 (95%)
Strand = Plus / Minus
Query: 229 aggtgggaacttatagctggaagaatccccggaagaacagcagaagaagtagagatgttc 288
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||| ||||
Sbjct: 24666459 aggtgggaacttatagctggaagaatacccggaaggacagcagaagaagtagagaagttc 24666400
Query: 289 tgg 291
|||
Sbjct: 24666399 tgg 24666397
Score = 101 bits (51), Expect = 2e-18
Identities = 63/67 (94%)
Strand = Plus / Minus
Query: 229 aggtgggaacttatagctggaagaatccccggaagaacagcagaagaagtagagatgttc 288
|||||||||||||||||||||||||| || ||||| ||||||||||||||||||| ||||
Sbjct: 24639421 aggtgggaacttatagctggaagaataccgggaaggacagcagaagaagtagagaagttc 24639362
Query: 289 tgggcaa 295
|||||||
Sbjct: 24639361 tgggcaa 24639355
Score = 95.6 bits (48), Expect = 1e-16
Identities = 81/92 (88%)
Strand = Plus / Minus
Query: 141 agaagttaatagcaacgcaaagcattttgttgatttcacggaggcagaggaagatcttgt 200
||||||||||| || ||| || |||||||| |||||||||| | |||||||||||| ||
Sbjct: 24693187 agaagttaataacactgcacagaattttgttcatttcacggaagaagaggaagatctcgt 24693128
Query: 201 tttcagaatgcacagacttgtcgggaacaggt 232
||||||||||||||| ||||| ||||||||||
Sbjct: 24693127 tttcagaatgcacaggcttgttgggaacaggt 24693096
Score = 89.7 bits (45), Expect = 7e-15
Identities = 63/69 (91%)
Strand = Plus / Minus
Query: 164 attttgttgatttcacggaggcagaggaagatcttgttttcagaatgcacagacttgtcg 223
|||||||| ||||||| || | |||||||||| ||||||||||||||||||| |||||||
Sbjct: 24639671 attttgttcatttcacagaagaagaggaagatattgttttcagaatgcacaggcttgtcg 24639612
Query: 224 ggaacaggt 232
|||||||||
Sbjct: 24639611 ggaacaggt 24639603
Score = 87.7 bits (44), Expect = 3e-14
Identities = 80/92 (86%)
Strand = Plus / Minus
Query: 141 agaagttaatagcaacgcaaagcattttgttgatttcacggaggcagaggaagatcttgt 200
|||||||||||||| ||| || |||||||| ||||||| | | |||||||||||||||
Sbjct: 24673894 agaagttaatagcactgcacagaattttgttcatttcacataagaagaggaagatcttgt 24673835
Query: 201 tttcagaatgcacagacttgtcgggaacaggt 232
| ||||||||||||| ||||| ||||||||||
Sbjct: 24673834 tatcagaatgcacaggcttgttgggaacaggt 24673803
>dbj|AP003328.3 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
clone:B1040D09
Length = 148102
Score = 109 bits (55), Expect = 7e-21
Identities = 73/79 (92%)
Strand = Plus / Minus
Query: 228 caggtgggaacttatagctggaagaatccccggaagaacagcagaagaagtagagatgtt 287
|||||||||||||||||||||||||||||| |||||||||||| |||| ||||| |||||
Sbjct: 118871 caggtgggaacttatagctggaagaatccctggaagaacagcaaaagaggtagaaatgtt 118812
Query: 288 ctgggcaaaaaagcaccag 306
||||||| ||||||||||
Sbjct: 118811 ctgggcagtaaagcaccag 118793
Score = 101 bits (51), Expect = 2e-18
Identities = 60/63 (95%)
Strand = Plus / Minus
Query: 229 aggtgggaacttatagctggaagaatccccggaagaacagcagaagaagtagagatgttc 288
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||| ||||
Sbjct: 92422 aggtgggaacttatagctggaagaatacccggaaggacagcagaagaagtagagaagttc 92363
Query: 289 tgg 291
|||
Sbjct: 92362 tgg 92360
Score = 101 bits (51), Expect = 2e-18
Identities = 63/67 (94%)
Strand = Plus / Minus
Query: 229 aggtgggaacttatagctggaagaatccccggaagaacagcagaagaagtagagatgttc 288
|||||||||||||||||||||||||| || ||||| ||||||||||||||||||| ||||
Sbjct: 65384 aggtgggaacttatagctggaagaataccgggaaggacagcagaagaagtagagaagttc 65325
Query: 289 tgggcaa 295
|||||||
Sbjct: 65324 tgggcaa 65318
Score = 95.6 bits (48), Expect = 1e-16
Identities = 81/92 (88%)
Strand = Plus / Minus
Query: 141 agaagttaatagcaacgcaaagcattttgttgatttcacggaggcagaggaagatcttgt 200
||||||||||| || ||| || |||||||| |||||||||| | |||||||||||| ||
Sbjct: 119150 agaagttaataacactgcacagaattttgttcatttcacggaagaagaggaagatctcgt 119091
Query: 201 tttcagaatgcacagacttgtcgggaacaggt 232
||||||||||||||| ||||| ||||||||||
Sbjct: 119090 tttcagaatgcacaggcttgttgggaacaggt 119059
Score = 89.7 bits (45), Expect = 7e-15
Identities = 63/69 (91%)
Strand = Plus / Minus
Query: 164 attttgttgatttcacggaggcagaggaagatcttgttttcagaatgcacagacttgtcg 223
|||||||| ||||||| || | |||||||||| ||||||||||||||||||| |||||||
Sbjct: 65634 attttgttcatttcacagaagaagaggaagatattgttttcagaatgcacaggcttgtcg 65575
Query: 224 ggaacaggt 232
|||||||||
Sbjct: 65574 ggaacaggt 65566
Score = 87.7 bits (44), Expect = 3e-14
Identities = 80/92 (86%)
Strand = Plus / Minus
Query: 141 agaagttaatagcaacgcaaagcattttgttgatttcacggaggcagaggaagatcttgt 200
|||||||||||||| ||| || |||||||| ||||||| | | |||||||||||||||
Sbjct: 99857 agaagttaatagcactgcacagaattttgttcatttcacataagaagaggaagatcttgt 99798
Query: 201 tttcagaatgcacagacttgtcgggaacaggt 232
| ||||||||||||| ||||| ||||||||||
Sbjct: 99797 tatcagaatgcacaggcttgttgggaacaggt 99766
>dbj|AP002843.2 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0407B12
Length = 148762
Score = 109 bits (55), Expect = 7e-21
Identities = 73/79 (92%)
Strand = Plus / Minus
Query: 228 caggtgggaacttatagctggaagaatccccggaagaacagcagaagaagtagagatgtt 287
|||||||||||||||||||||||||||||| |||||||||||| |||| ||||| |||||
Sbjct: 61485 caggtgggaacttatagctggaagaatccctggaagaacagcaaaagaggtagaaatgtt 61426
Query: 288 ctgggcaaaaaagcaccag 306
||||||| ||||||||||
Sbjct: 61425 ctgggcagtaaagcaccag 61407
Score = 101 bits (51), Expect = 2e-18
Identities = 60/63 (95%)
Strand = Plus / Minus
Query: 229 aggtgggaacttatagctggaagaatccccggaagaacagcagaagaagtagagatgttc 288
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||| ||||
Sbjct: 35036 aggtgggaacttatagctggaagaatacccggaaggacagcagaagaagtagagaagttc 34977
Query: 289 tgg 291
|||
Sbjct: 34976 tgg 34974
Score = 101 bits (51), Expect = 2e-18
Identities = 63/67 (94%)
Strand = Plus / Minus
Query: 229 aggtgggaacttatagctggaagaatccccggaagaacagcagaagaagtagagatgttc 288
|||||||||||||||||||||||||| || ||||| ||||||||||||||||||| ||||
Sbjct: 7998 aggtgggaacttatagctggaagaataccgggaaggacagcagaagaagtagagaagttc 7939
Query: 289 tgggcaa 295
|||||||
Sbjct: 7938 tgggcaa 7932
Score = 95.6 bits (48), Expect = 1e-16
Identities = 81/92 (88%)
Strand = Plus / Minus
Query: 141 agaagttaatagcaacgcaaagcattttgttgatttcacggaggcagaggaagatcttgt 200
||||||||||| || ||| || |||||||| |||||||||| | |||||||||||| ||
Sbjct: 61764 agaagttaataacactgcacagaattttgttcatttcacggaagaagaggaagatctcgt 61705
Query: 201 tttcagaatgcacagacttgtcgggaacaggt 232
||||||||||||||| ||||| ||||||||||
Sbjct: 61704 tttcagaatgcacaggcttgttgggaacaggt 61673
Score = 89.7 bits (45), Expect = 7e-15
Identities = 63/69 (91%)
Strand = Plus / Minus
Query: 164 attttgttgatttcacggaggcagaggaagatcttgttttcagaatgcacagacttgtcg 223
|||||||| ||||||| || | |||||||||| ||||||||||||||||||| |||||||
Sbjct: 8248 attttgttcatttcacagaagaagaggaagatattgttttcagaatgcacaggcttgtcg 8189
Query: 224 ggaacaggt 232
|||||||||
Sbjct: 8188 ggaacaggt 8180
Score = 87.7 bits (44), Expect = 3e-14
Identities = 80/92 (86%)
Strand = Plus / Minus
Query: 141 agaagttaatagcaacgcaaagcattttgttgatttcacggaggcagaggaagatcttgt 200
|||||||||||||| ||| || |||||||| ||||||| | | |||||||||||||||
Sbjct: 42471 agaagttaatagcactgcacagaattttgttcatttcacataagaagaggaagatcttgt 42412
Query: 201 tttcagaatgcacagacttgtcgggaacaggt 232
| ||||||||||||| ||||| ||||||||||
Sbjct: 42411 tatcagaatgcacaggcttgttgggaacaggt 42380
>emb|Z92542.2 |HS245G19 Human DNA sequence from clone RP1-245G19 on chromosome Xp22.11-22.2
Contains the 3' end of the CDKL5 gene for cyclin-dependent
kinase-like 5, the 3' end of the RS1 gene for retinoschisis
(X-linked, juvenile) 1, and a gap junction protein, alpha
2, 38kDa (connexin 38) (GJA2) pseudogene, complete sequence
Length = 145538
Score = 40.1 bits (20), Expect = 5.7
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 311 aatgaaagggaaagcaggat 330
||||||||||||||||||||
Sbjct: 138899 aatgaaagggaaagcaggat 138880
>emb|CT025634.2 | Pan troglodytes chromosome X clone PTB-037N22 map Xq28, complete sequence
Length = 145822
Score = 40.1 bits (20), Expect = 5.7
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 311 aatgaaagggaaagcaggat 330
||||||||||||||||||||
Sbjct: 124981 aatgaaagggaaagcaggat 125000
Database: nt
Posted date: May 29, 2006 11:10 AM
Number of letters in database: 3,984,495,279
Number of sequences in database: 917,343
Database: /shigen/export/home/twatanab/db/nt/nt.01
Posted date: May 29, 2006 11:16 AM
Number of letters in database: 3,988,174,986
Number of sequences in database: 835,257
Database: /shigen/export/home/twatanab/db/nt/nt.02
Posted date: May 29, 2006 11:21 AM
Number of letters in database: 3,991,246,324
Number of sequences in database: 771,481
Database: /shigen/export/home/twatanab/db/nt/nt.03
Posted date: May 29, 2006 11:27 AM
Number of letters in database: 3,990,718,311
Number of sequences in database: 977,174
Database: /shigen/export/home/twatanab/db/nt/nt.04
Posted date: May 29, 2006 11:29 AM
Number of letters in database: 1,278,410,368
Number of sequences in database: 400,813
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,981,746
Number of Sequences: 3902068
Number of extensions: 4981746
Number of successful extensions: 96200
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 96118
Number of HSP's gapped (non-prelim): 82
length of query: 425
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 403
effective length of database: 17,147,199,772
effective search space: 6910321508116
effective search space used: 6910321508116
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)