Clone Name | basd2i20 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_473840.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 954 Score = 157 bits (79), Expect = 3e-35 Identities = 109/119 (91%) Strand = Plus / Plus Query: 282 gaagcggcccgacatactcaacatgatccggagtgcagcatgtcttaattcatcatctac 341 ||||||||||||||||||||||||||||||||||||| |||| |||||||| |||||||| Sbjct: 93 gaagcggcccgacatactcaacatgatccggagtgcaacatgccttaattcgtcatctac 152 Query: 342 tgacactggcaaggggcggagtaagcagtcaagcaccaaggtgacgcatggattccact 400 || || ||||||||| |||||||||||||||||| ||| ||||| ||||||||||||| Sbjct: 153 cgataccggcaaggggaggagtaagcagtcaagcaacaaagtgactcatggattccact 211
>dbj|AK070129.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023047A13, full insert sequence Length = 1585 Score = 149 bits (75), Expect = 8e-33 Identities = 108/119 (90%) Strand = Plus / Plus Query: 282 gaagcggcccgacatactcaacatgatccggagtgcagcatgtcttaattcatcatctac 341 ||||||||||||||||||||||||||||||||||||| |||| ||| |||| |||||||| Sbjct: 367 gaagcggcccgacatactcaacatgatccggagtgcaacatgccttgattcgtcatctac 426 Query: 342 tgacactggcaaggggcggagtaagcagtcaagcaccaaggtgacgcatggattccact 400 || || ||||||||| |||||||||||||||||| ||| ||||| ||||||||||||| Sbjct: 427 cgataccggcaaggggaggagtaagcagtcaagcaacaaagtgactcatggattccact 485 Score = 44.1 bits (22), Expect = 0.34 Identities = 34/38 (89%) Strand = Plus / Plus Query: 184 atggtcggccggatggagcggcagacggtgtcgacgtc 221 |||||||| ||||||||||||||| ||| |||| |||| Sbjct: 263 atggtcgggcggatggagcggcagtcggcgtcgtcgtc 300
>emb|AL606691.4|OSJN00081 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0060N03, complete sequence Length = 179798 Score = 97.6 bits (49), Expect = 3e-17 Identities = 79/89 (88%) Strand = Plus / Minus Query: 312 gagtgcagcatgtcttaattcatcatctactgacactggcaaggggcggagtaagcagtc 371 ||||||| |||| |||||||| |||||||| || || ||||||||| ||||||||||||| Sbjct: 178391 gagtgcaacatgccttaattcgtcatctaccgataccggcaaggggaggagtaagcagtc 178332 Query: 372 aagcaccaaggtgacgcatggattccact 400 ||||| ||| ||||| ||||||||||||| Sbjct: 178331 aagcaacaaagtgactcatggattccact 178303
>emb|AL606684.3|OSJN00088 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0085I10, complete sequence Length = 150551 Score = 97.6 bits (49), Expect = 3e-17 Identities = 79/89 (88%) Strand = Plus / Minus Query: 312 gagtgcagcatgtcttaattcatcatctactgacactggcaaggggcggagtaagcagtc 371 ||||||| |||| |||||||| |||||||| || || ||||||||| ||||||||||||| Sbjct: 8238 gagtgcaacatgccttaattcgtcatctaccgataccggcaaggggaggagtaagcagtc 8179 Query: 372 aagcaccaaggtgacgcatggattccact 400 ||||| ||| ||||| ||||||||||||| Sbjct: 8178 aagcaacaaagtgactcatggattccact 8150 Score = 61.9 bits (31), Expect = 1e-06 Identities = 31/31 (100%) Strand = Plus / Minus Query: 282 gaagcggcccgacatactcaacatgatccgg 312 ||||||||||||||||||||||||||||||| Sbjct: 10394 gaagcggcccgacatactcaacatgatccgg 10364 Score = 44.1 bits (22), Expect = 0.34 Identities = 34/38 (89%) Strand = Plus / Minus Query: 184 atggtcggccggatggagcggcagacggtgtcgacgtc 221 |||||||| ||||||||||||||| ||| |||| |||| Sbjct: 10498 atggtcgggcggatggagcggcagtcggcgtcgtcgtc 10461
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 97.6 bits (49), Expect = 3e-17 Identities = 79/89 (88%) Strand = Plus / Minus Query: 312 gagtgcagcatgtcttaattcatcatctactgacactggcaaggggcggagtaagcagtc 371 ||||||| |||| |||||||| |||||||| || || ||||||||| ||||||||||||| Sbjct: 30910870 gagtgcaacatgccttaattcgtcatctaccgataccggcaaggggaggagtaagcagtc 30910811 Query: 372 aagcaccaaggtgacgcatggattccact 400 ||||| ||| ||||| ||||||||||||| Sbjct: 30910810 aagcaacaaagtgactcatggattccact 30910782 Score = 61.9 bits (31), Expect = 1e-06 Identities = 31/31 (100%) Strand = Plus / Minus Query: 282 gaagcggcccgacatactcaacatgatccgg 312 ||||||||||||||||||||||||||||||| Sbjct: 30913026 gaagcggcccgacatactcaacatgatccgg 30912996 Score = 44.1 bits (22), Expect = 0.34 Identities = 34/38 (89%) Strand = Plus / Minus Query: 184 atggtcggccggatggagcggcagacggtgtcgacgtc 221 |||||||| ||||||||||||||| ||| |||| |||| Sbjct: 30913130 atggtcgggcggatggagcggcagtcggcgtcgtcgtc 30913093 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 75 gccgctgcctcgcctcgtct 94 |||||||||||||||||||| Sbjct: 14528247 gccgctgcctcgcctcgtct 14528266
>emb|AL442105.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0702G05, complete sequence Length = 134586 Score = 97.6 bits (49), Expect = 3e-17 Identities = 79/89 (88%) Strand = Plus / Minus Query: 312 gagtgcagcatgtcttaattcatcatctactgacactggcaaggggcggagtaagcagtc 371 ||||||| |||| |||||||| |||||||| || || ||||||||| ||||||||||||| Sbjct: 87864 gagtgcaacatgccttaattcgtcatctaccgataccggcaaggggaggagtaagcagtc 87805 Query: 372 aagcaccaaggtgacgcatggattccact 400 ||||| ||| ||||| ||||||||||||| Sbjct: 87804 aagcaacaaagtgactcatggattccact 87776 Score = 61.9 bits (31), Expect = 1e-06 Identities = 31/31 (100%) Strand = Plus / Minus Query: 282 gaagcggcccgacatactcaacatgatccgg 312 ||||||||||||||||||||||||||||||| Sbjct: 90019 gaagcggcccgacatactcaacatgatccgg 89989 Score = 44.1 bits (22), Expect = 0.34 Identities = 34/38 (89%) Strand = Plus / Minus Query: 184 atggtcggccggatggagcggcagacggtgtcgacgtc 221 |||||||| ||||||||||||||| ||| |||| |||| Sbjct: 90123 atggtcgggcggatggagcggcagtcggcgtcgtcgtc 90086
>emb|AJ001115.1|AGLEU2 Ashbya gossypii LEU2 gene Length = 2812 Score = 48.1 bits (24), Expect = 0.022 Identities = 24/24 (100%) Strand = Plus / Plus Query: 140 tgcgggtgcgcgggccggcggcgg 163 |||||||||||||||||||||||| Sbjct: 150 tgcgggtgcgcgggccggcggcgg 173
>gb|AE016814.1| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome I, complete sequence Length = 691920 Score = 48.1 bits (24), Expect = 0.022 Identities = 24/24 (100%) Strand = Plus / Minus Query: 140 tgcgggtgcgcgggccggcggcgg 163 |||||||||||||||||||||||| Sbjct: 322045 tgcgggtgcgcgggccggcggcgg 322022
>ref|NM_207884.1| Eremothecium gossypii AAL011Cp (AAL011C), mRNA Length = 882 Score = 48.1 bits (24), Expect = 0.022 Identities = 24/24 (100%) Strand = Plus / Plus Query: 140 tgcgggtgcgcgggccggcggcgg 163 |||||||||||||||||||||||| Sbjct: 347 tgcgggtgcgcgggccggcggcgg 370
>gb|AC156572.3| Mus musculus BAC clone RP23-216C6 from chromosome 13, complete sequence Length = 208578 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 315 tgcagcatgtcttaattcat 334 |||||||||||||||||||| Sbjct: 190758 tgcagcatgtcttaattcat 190777 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 315 tgcagcatgtcttaattcat 334 |||||||||||||||||||| Sbjct: 114733 tgcagcatgtcttaattcat 114752 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 315 tgcagcatgtcttaattcat 334 |||||||||||||||||||| Sbjct: 89934 tgcagcatgtcttaattcat 89953
>gb|AC119290.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0037H06, complete sequence Length = 144457 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 75 gccgctgcctcgcctcgtct 94 |||||||||||||||||||| Sbjct: 108288 gccgctgcctcgcctcgtct 108269
>gb|AC124426.4| Mus musculus BAC clone RP24-231B8 from chromosome 13, complete sequence Length = 199585 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 315 tgcagcatgtcttaattcat 334 |||||||||||||||||||| Sbjct: 185889 tgcagcatgtcttaattcat 185908 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 315 tgcagcatgtcttaattcat 334 |||||||||||||||||||| Sbjct: 71922 tgcagcatgtcttaattcat 71941
>gb|U77053.1|U77052S2 Phalaenopsis cv. 'True Lady' acyl-CoA oxidase (PACO1) gene, exons 2 through 7 and complete cds Length = 2689 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 333 atcatctactgacactggca 352 |||||||||||||||||||| Sbjct: 1549 atcatctactgacactggca 1568
>emb|Z82242.1|HS96A9 Human DNA sequence from clone RP1-96A9 on chromosome X Contains a CpG island, complete sequence Length = 91690 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 121 ccgtcttgtggctgtggcct 140 |||||||||||||||||||| Sbjct: 35941 ccgtcttgtggctgtggcct 35922
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 75 gccgctgcctcgcctcgtct 94 |||||||||||||||||||| Sbjct: 8775846 gccgctgcctcgcctcgtct 8775827
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 75 gccgctgcctcgcctcgtct 94 |||||||||||||||||||| Sbjct: 10944233 gccgctgcctcgcctcgtct 10944252
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 141 gcgggtgcgcgggccggcgg 160 |||||||||||||||||||| Sbjct: 1140185 gcgggtgcgcgggccggcgg 1140204
>dbj|AP004168.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1756_H07 Length = 217205 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 75 gccgctgcctcgcctcgtct 94 |||||||||||||||||||| Sbjct: 150432 gccgctgcctcgcctcgtct 150451
>emb|CT030172.10| Mouse DNA sequence from clone RP23-313L22 on chromosome 13, complete sequence Length = 228833 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 315 tgcagcatgtcttaattcat 334 |||||||||||||||||||| Sbjct: 6198 tgcagcatgtcttaattcat 6179
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 144 ggtgcgcgggccggcggcgg 163 |||||||||||||||||||| Sbjct: 3066195 ggtgcgcgggccggcggcgg 3066176
>emb|CT030240.7| Mouse DNA sequence from clone RP23-26N21 on chromosome 13, complete sequence Length = 175209 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 315 tgcagcatgtcttaattcat 334 |||||||||||||||||||| Sbjct: 88917 tgcagcatgtcttaattcat 88898
>emb|CT030185.11| Mouse DNA sequence from clone RP23-204L16 on chromosome 13, complete sequence Length = 116416 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 315 tgcagcatgtcttaattcat 334 |||||||||||||||||||| Sbjct: 41782 tgcagcatgtcttaattcat 41763
>emb|CT030722.6| Mouse DNA sequence from clone RP23-191N15 on chromosome 13, complete sequence Length = 187837 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 315 tgcagcatgtcttaattcat 334 |||||||||||||||||||| Sbjct: 145936 tgcagcatgtcttaattcat 145917
>gb|U66299.1|PSU66299 Phalaenopsis sp. 'True Lady' acyl-CoA oxidase homolog mRNA, complete cds Length = 2365 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 333 atcatctactgacactggca 352 |||||||||||||||||||| Sbjct: 1751 atcatctactgacactggca 1770
>gb|AC171004.2| Mus musculus BAC clone RP23-67N16 from chromosome 13, complete sequence Length = 213660 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 315 tgcagcatgtcttaattcat 334 |||||||||||||||||||| Sbjct: 212386 tgcagcatgtcttaattcat 212405 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,341,301 Number of Sequences: 3902068 Number of extensions: 2341301 Number of successful extensions: 51689 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 26 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 51380 Number of HSP's gapped (non-prelim): 309 length of query: 400 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 378 effective length of database: 17,147,199,772 effective search space: 6481641513816 effective search space used: 6481641513816 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)