ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd2i17 |
|---|---|
| Clone Library Name | barley_pub |
>ZF2N1_ARATH (Q6NNI8) Zinc finger A20 and AN1 domains-containing protein| At1g12440 Length = 168 Score = 73.9 bits (180), Expect(2) = 2e-23 Identities = 30/62 (48%), Positives = 41/62 (66%) Frame = +1 Query: 376 GTSEAVAVSPKRKEGPNRCSTCRKRVGLTGFNCRCGNMYCSLHRYSDKHDCQFDYRTAAR 555 G S A + P K RC +C K+VG+TGF CRCG+ +C HRY + H+CQFD++ AR Sbjct: 92 GDSAAAPLDPP-KSTATRCLSCNKKVGVTGFKCRCGSTFCGTHRYPESHECQFDFKGVAR 150 Query: 556 DA 561 +A Sbjct: 151 EA 152 Score = 54.7 bits (130), Expect(2) = 2e-23 Identities = 23/58 (39%), Positives = 35/58 (60%) Frame = +3 Query: 84 EHKEAGCQQPEGPILCVNNCGFFGSAATMNMCSKCHKEMVMKEEQAKLAASSFDSIVN 257 E ++ P P LCV CGFFGS + MN+CSKC++++ EEQ A ++ + +N Sbjct: 4 EQNDSTSFSPSEPKLCVKGCGFFGSPSNMNLCSKCYRDIRATEEQTASAKAAVEKSLN 61
>ZF2N3_ARATH (Q9SZ69) Zinc finger A20 and AN1 domains-containing protein| At4g12040 Length = 175 Score = 74.7 bits (182), Expect(2) = 1e-22 Identities = 32/84 (38%), Positives = 50/84 (59%), Gaps = 1/84 (1%) Frame = +1 Query: 313 EVAVAQVDVKALVVQPAADVAGTSEAVAVSPKRKEGPN-RCSTCRKRVGLTGFNCRCGNM 489 E+ A ++ + +P++ V +E P R PN RC +C K+VG+ GF C+CG+ Sbjct: 77 EIKPAHLETVVVTAEPSS-VPVAAEQDEAEPSRPVRPNNRCFSCNKKVGVMGFKCKCGST 135 Query: 490 YCSLHRYSDKHDCQFDYRTAARDA 561 +C HRY +KH+C FD++ RDA Sbjct: 136 FCGSHRYPEKHECSFDFKEVGRDA 159 Score = 51.2 bits (121), Expect(2) = 1e-22 Identities = 20/43 (46%), Positives = 30/43 (69%) Frame = +3 Query: 111 PEGPILCVNNCGFFGSAATMNMCSKCHKEMVMKEEQAKLAASS 239 P P LC N CGFFGS + MN+CSKC++ + +E+Q +A ++ Sbjct: 13 PTEPKLCDNGCGFFGSPSNMNLCSKCYRSLRAEEDQTAVAKAA 55
>ISAP1_ORYSA (Q9LLX1) Multiple stress-responsive zinc-finger protein ISAP1| (Stress-associated protein 1) (OsISAP1) Length = 164 Score = 88.6 bits (218), Expect = 1e-17 Identities = 38/81 (46%), Positives = 51/81 (62%) Frame = +1 Query: 319 AVAQVDVKALVVQPAADVAGTSEAVAVSPKRKEGPNRCSTCRKRVGLTGFNCRCGNMYCS 498 A V+ +A + P ++A + NRCS CRKRVGLTGF CRCG+++C Sbjct: 68 AAPLVEPQAPLPPPVEEMASALATAPAPVAKTSAVNRCSRCRKRVGLTGFRCRCGHLFCG 127 Query: 499 LHRYSDKHDCQFDYRTAARDA 561 HRYSD+H C +DY++AARDA Sbjct: 128 EHRYSDRHGCSYDYKSAARDA 148 Score = 34.7 bits (78), Expect = 0.19 Identities = 12/21 (57%), Positives = 15/21 (71%) Frame = +3 Query: 126 LCVNNCGFFGSAATMNMCSKC 188 LC N+CGF G+ AT N+C C Sbjct: 21 LCANSCGFPGNPATQNLCQNC 41
>Z20D2_HUMAN (O76080) Zinc finger A20 domain-containing protein 2 (Zinc finger| protein 216) Length = 213 Score = 84.7 bits (208), Expect = 2e-16 Identities = 38/72 (52%), Positives = 52/72 (72%), Gaps = 3/72 (4%) Frame = +1 Query: 346 LVVQPAADVA--GTSEAVAVSPKR-KEGPNRCSTCRKRVGLTGFNCRCGNMYCSLHRYSD 516 +V QP+ V+ TS++ +P+ K NRC CRK+VGLTGF+CRCGN++C LHRYSD Sbjct: 123 VVTQPSPSVSQPSTSQSEEKAPELPKPKKNRCFMCRKKVGLTGFDCRCGNLFCGLHRYSD 182 Query: 517 KHDCQFDYRTAA 552 KH+C +DY+ A Sbjct: 183 KHNCPYDYKAEA 194 Score = 44.3 bits (103), Expect = 2e-04 Identities = 16/38 (42%), Positives = 25/38 (65%) Frame = +3 Query: 108 QPEGPILCVNNCGFFGSAATMNMCSKCHKEMVMKEEQA 221 Q GP+LC CGF+G+ T MCS C+KE + +++ + Sbjct: 7 QTPGPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQQNS 44
>Z20D2_MOUSE (O88878) Zinc finger A20 domain-containing protein 2 (Zinc finger| protein 216) Length = 213 Score = 83.6 bits (205), Expect = 4e-16 Identities = 39/74 (52%), Positives = 50/74 (67%), Gaps = 5/74 (6%) Frame = +1 Query: 346 LVVQPAADVAGTS-----EAVAVSPKRKEGPNRCSTCRKRVGLTGFNCRCGNMYCSLHRY 510 +V QP+ V+ S E PK K+ NRC CRK+VGLTGF+CRCGN++C LHRY Sbjct: 123 VVTQPSPSVSQPSSSQSEEKAPELPKPKK--NRCFMCRKKVGLTGFDCRCGNLFCGLHRY 180 Query: 511 SDKHDCQFDYRTAA 552 SDKH+C +DY+ A Sbjct: 181 SDKHNCPYDYKAEA 194 Score = 44.3 bits (103), Expect = 2e-04 Identities = 16/38 (42%), Positives = 25/38 (65%) Frame = +3 Query: 108 QPEGPILCVNNCGFFGSAATMNMCSKCHKEMVMKEEQA 221 Q GP+LC CGF+G+ T MCS C+KE + +++ + Sbjct: 7 QTPGPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQQNS 44
>ZF2N2_ARATH (Q9SJM6) Zinc finger A20 and AN1 domains-containing protein| At2g36320 Length = 161 Score = 76.3 bits (186), Expect = 6e-14 Identities = 29/52 (55%), Positives = 37/52 (71%) Frame = +1 Query: 403 PKRKEGPNRCSTCRKRVGLTGFNCRCGNMYCSLHRYSDKHDCQFDYRTAARD 558 P + PNRC+ CRKRVGLTGF CRCG +C HRY + H C FD+++A R+ Sbjct: 93 PSPPQRPNRCTVCRKRVGLTGFMCRCGTTFCGSHRYPEVHGCTFDFKSAGRE 144 Score = 65.9 bits (159), Expect = 8e-11 Identities = 27/53 (50%), Positives = 39/53 (73%) Frame = +3 Query: 90 KEAGCQQPEGPILCVNNCGFFGSAATMNMCSKCHKEMVMKEEQAKLAASSFDS 248 +E C+ PEG LCVNNCGFFGS+ATMN+CS C+ ++ +K++Q S+ +S Sbjct: 3 EEHRCETPEGHRLCVNNCGFFGSSATMNLCSNCYGDLCLKQQQQASMKSTVES 55
>ZFAN3_HUMAN (Q9H8U3) AN1-type zinc finger protein 3 (Testis-expressed sequence| 27) Length = 227 Score = 47.4 bits (111), Expect = 3e-05 Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 3/81 (3%) Frame = +1 Query: 325 AQVDVKALVVQPAADVAGTSEAVAVSPKRKEGPNRCSTCRKRVGLTGF---NCRCGNMYC 495 +Q + +A V+ + T + S +++ RC C+ ++ L +CRCG ++C Sbjct: 122 SQSENEASPVKRPRLLENTERSEETSRSKQKSRRRCFQCQTKLELVQQELGSCRCGYVFC 181 Query: 496 SLHRYSDKHDCQFDYRTAARD 558 LHR ++HDC FD+ R+ Sbjct: 182 MLHRLPEQHDCTFDHMGRGRE 202 Score = 39.3 bits (90), Expect = 0.008 Identities = 20/53 (37%), Positives = 31/53 (58%), Gaps = 1/53 (1%) Frame = +3 Query: 93 EAGCQQPEGPILCVN-NCGFFGSAATMNMCSKCHKEMVMKEEQAKLAASSFDS 248 +AG ++ + P L CGF+GS+ TMN+CSKC + K+ A S+ +S Sbjct: 3 DAGSERSKAPSLPPRCPCGFWGSSKTMNLCSKCFADFQKKQPDDDSAPSTSNS 55
>ZFAN3_RAT (Q5U2M7) AN1-type zinc finger protein 3 (Testis-expressed sequence| 27) Length = 227 Score = 45.1 bits (105), Expect = 1e-04 Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 3/53 (5%) Frame = +1 Query: 409 RKEGPNRCSTCRKRVGLTGF---NCRCGNMYCSLHRYSDKHDCQFDYRTAARD 558 +++ RC C+ ++ L +CRCG ++C LHR ++HDC FD+ R+ Sbjct: 150 KQKSRRRCFQCQTKLELVQQELGSCRCGYVFCMLHRLPEQHDCTFDHMGRGRE 202 Score = 37.7 bits (86), Expect = 0.023 Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 1/53 (1%) Frame = +3 Query: 93 EAGCQQPEGPILCVN-NCGFFGSAATMNMCSKCHKEMVMKEEQAKLAASSFDS 248 +AG ++ + P L CGF+GS+ TMN+CSKC + K+ S+ +S Sbjct: 3 DAGSERSKAPSLPPRCPCGFWGSSKTMNLCSKCFADFQKKQPDDDSTPSTSNS 55
>ZFAN3_MOUSE (Q497H0) AN1-type zinc finger protein 3 (Testis-expressed sequence| 27) Length = 227 Score = 45.1 bits (105), Expect = 1e-04 Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 3/53 (5%) Frame = +1 Query: 409 RKEGPNRCSTCRKRVGLTGF---NCRCGNMYCSLHRYSDKHDCQFDYRTAARD 558 +++ RC C+ ++ L +CRCG ++C LHR ++HDC FD+ R+ Sbjct: 150 KQKSRRRCFQCQTKLELVQQELGSCRCGYVFCMLHRLPEQHDCTFDHMGRGRE 202 Score = 37.7 bits (86), Expect = 0.023 Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 1/53 (1%) Frame = +3 Query: 93 EAGCQQPEGPILCVN-NCGFFGSAATMNMCSKCHKEMVMKEEQAKLAASSFDS 248 +AG ++ + P L CGF+GS+ TMN+CSKC + K+ S+ +S Sbjct: 3 DAGSERSKAPSLPPRCPCGFWGSSKTMNLCSKCFADFQKKQPDDDSTPSTSNS 55
>ZFAN3_XENLA (Q66J85) AN1-type zinc finger protein 3 homolog| Length = 226 Score = 45.1 bits (105), Expect = 1e-04 Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 3/56 (5%) Frame = +1 Query: 400 SPKRKEGPNRCSTCRKRVGLTGF---NCRCGNMYCSLHRYSDKHDCQFDYRTAARD 558 S +++ RC C+ ++ L +CRCG ++C LHR ++HDC FD+ R+ Sbjct: 146 SRSKQKSRRRCFRCQIKLELVQQELGSCRCGYVFCMLHRLPEQHDCTFDHMGRGRE 201 Score = 38.1 bits (87), Expect = 0.017 Identities = 16/36 (44%), Positives = 22/36 (61%) Frame = +3 Query: 141 CGFFGSAATMNMCSKCHKEMVMKEEQAKLAASSFDS 248 CGF+GS+ TMN+CSKC + K+ A S+ S Sbjct: 20 CGFWGSSKTMNLCSKCFADFQKKQPDEDTAPSTSSS 55
>RABX5_HUMAN (Q9UJ41) Rab5 GDP/GTP exchange factor (Rabaptin 5-associated| exchange factor for Rab5) (Rabex-5) Length = 708 Score = 37.4 bits (85), Expect = 0.029 Identities = 14/49 (28%), Positives = 25/49 (51%) Frame = +3 Query: 81 MEHKEAGCQQPEGPILCVNNCGFFGSAATMNMCSKCHKEMVMKEEQAKL 227 ++ + G + +LC CG++G+ A CSKC +E K Q ++ Sbjct: 141 LKSERRGIHVDQSDLLCKKGCGYYGNPAWQGFCSKCWREEYHKARQKQI 189
>RABX5_BOVIN (O18973) Rab5 GDP/GTP exchange factor (Rabex-5)| Length = 492 Score = 37.4 bits (85), Expect = 0.029 Identities = 14/49 (28%), Positives = 25/49 (51%) Frame = +3 Query: 81 MEHKEAGCQQPEGPILCVNNCGFFGSAATMNMCSKCHKEMVMKEEQAKL 227 ++ + G + +LC CG++G+ A CSKC +E K Q ++ Sbjct: 3 LKSERRGIHVDQSELLCKKGCGYYGNPAWQGFCSKCWREEYHKARQKQI 51
>RABX5_MOUSE (Q9JM13) Rab5 GDP/GTP exchange factor (Rabex-5)| Length = 491 Score = 37.4 bits (85), Expect = 0.029 Identities = 14/49 (28%), Positives = 25/49 (51%) Frame = +3 Query: 81 MEHKEAGCQQPEGPILCVNNCGFFGSAATMNMCSKCHKEMVMKEEQAKL 227 ++ + G + +LC CG++G+ A CSKC +E K Q ++ Sbjct: 3 LKSERRGIHVDQSELLCKKGCGYYGNPAWQGFCSKCWREEYHKARQRQI 51
>ZFN2B_RAT (Q4KLG9) AN1-type zinc finger protein 2B| Length = 257 Score = 34.3 bits (77), Expect = 0.25 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 2/52 (3%) Frame = +1 Query: 406 KRKEGPNRC--STCRKRVGLTGFNCRCGNMYCSLHRYSDKHDCQFDYRTAAR 555 KRK N+C S CR+R + RCG +C HR+ HDC + +R Sbjct: 92 KRKIFTNKCERSGCRQREMMKLTCDRCGRNFCIKHRHPLDHDCSGEGHPTSR 143
>CEZ2_MOUSE (Q8R554) Zinc finger A20 domain-containing protein ? (EC 3.-.-.-)| (Zinc finger protein Cezanne 2) (OTU domain-containing protein 7) Length = 926 Score = 33.9 bits (76), Expect = 0.33 Identities = 12/31 (38%), Positives = 20/31 (64%) Frame = +3 Query: 138 NCGFFGSAATMNMCSKCHKEMVMKEEQAKLA 230 NC F+G A T + CS C++E + + +A+ A Sbjct: 894 NCAFYGRAETEHFCSYCYREELRRRREARAA 924
>CEZ1_HUMAN (Q6GQQ9) Zinc finger A20 domain-containing protein 1 (EC 3.-.-.-)| (Cellular zinc finger anti-NF-kappa B protein) (Zinc finger protein Cezanne) Length = 843 Score = 32.7 bits (73), Expect = 0.73 Identities = 14/39 (35%), Positives = 21/39 (53%) Frame = +3 Query: 102 CQQPEGPILCVNNCGFFGSAATMNMCSKCHKEMVMKEEQ 218 C+QP NC F+G T N CS C++E + + E+ Sbjct: 802 CKQP--------NCSFYGHPETNNFCSCCYREELRRRER 832
>ZFN2B_MOUSE (Q91X58) AN1-type zinc finger protein 2B| Length = 257 Score = 32.7 bits (73), Expect = 0.73 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 2/52 (3%) Frame = +1 Query: 406 KRKEGPNRC--STCRKRVGLTGFNCRCGNMYCSLHRYSDKHDCQFDYRTAAR 555 KRK N+C S CR+R + RCG +C HR+ H+C + +R Sbjct: 92 KRKIFTNKCERSGCRQREMMKLTCDRCGRNFCIKHRHPLDHECSGEGHQTSR 143
>CEZ2_HUMAN (Q8TE49) Zinc finger A20 domain-containing protein ? (EC 3.-.-.-)| (Zinc finger protein Cezanne 2) (OTU domain-containing protein 7) Length = 926 Score = 32.3 bits (72), Expect = 0.95 Identities = 11/29 (37%), Positives = 19/29 (65%) Frame = +3 Query: 138 NCGFFGSAATMNMCSKCHKEMVMKEEQAK 224 NC F+G A T + CS C++E + + +A+ Sbjct: 894 NCAFYGRAETEHYCSYCYREELRRRREAR 922
>AQP12_MOUSE (Q8CHJ2) Aquaporin-12A (AQP-12)| Length = 290 Score = 31.6 bits (70), Expect = 1.6 Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 5/56 (8%) Frame = -2 Query: 220 ACSSFMTISLWHLEHMFMVAALPKKPQLLT---HRIGP--SGCWQPASLCSILNNC 68 AC+ F +SL HL+H +V +P L+T + GP S + PA S+ +C Sbjct: 168 ACTFFFHLSLLHLQHSLLVYRVPALALLVTLMAYTAGPYTSAFFNPALAASVTFHC 223
>SC24C_ARATH (Q9M291) Protein transport protein Sec24-like CEF| Length = 1097 Score = 30.4 bits (67), Expect = 3.6 Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 5/78 (6%) Frame = +1 Query: 343 ALVVQPAADVAGTSEAVAVSPKRKEGPNRCSTCRKRVG-LTGFNCRCGNMYCSLHRYSDK 519 AL+VQP A + E + V + GP RCS C+ V F + C+L Y+D+ Sbjct: 405 ALIVQPMALSHPSEEPIQVVDFGESGPVRCSRCKGYVNPFMKFIDQGRKFICNLCGYTDE 464 Query: 520 ----HDCQFDYRTAARDA 561 + C RDA Sbjct: 465 TPRDYQCNLGPDGRRRDA 482
>ZFN2B_HUMAN (Q8WV99) AN1-type zinc finger protein 2B| Length = 257 Score = 30.4 bits (67), Expect = 3.6 Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 2/52 (3%) Frame = +1 Query: 406 KRKEGPNRCST--CRKRVGLTGFNCRCGNMYCSLHRYSDKHDCQFDYRTAAR 555 KRK N+C CR+R + RC +C HR+ HDC + +R Sbjct: 92 KRKIFTNKCERAGCRQREMMKLTCERCSRNFCIKHRHPLDHDCSGEGHPTSR 143
>HM14_CAEEL (P20271) Homeobox protein ceh-14| Length = 351 Score = 30.0 bits (66), Expect = 4.7 Identities = 14/28 (50%), Positives = 17/28 (60%) Frame = +1 Query: 427 RCSTCRKRVGLTGFNCRCGNMYCSLHRY 510 RCSTC+ +G T F R +MYC H Y Sbjct: 74 RCSTCKDELGATCF-LREDSMYCRAHFY 100
>DGK1_DROME (Q01583) Diacylglycerol kinase 1 (EC 2.7.1.107) (Diglyceride kinase| 1) (DGK 1) (DAG kinase 1) Length = 1020 Score = 29.6 bits (65), Expect = 6.1 Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 5/39 (12%) Frame = +1 Query: 427 RCSTCRKRV----GLTGFNCR-CGNMYCSLHRYSDKHDC 528 RCS CRKR+ G+TG CR C M + S K +C Sbjct: 269 RCSKCRKRIKAYHGITGLTCRWCHMMLHNRCASSVKKEC 307
>LRP4_RAT (Q9QYP1) Low-density lipoprotein receptor-related protein 4 precursor| (Multiple epidermal growth factor-like domains 7) Length = 1905 Score = 29.3 bits (64), Expect = 8.0 Identities = 16/55 (29%), Positives = 23/55 (41%) Frame = +1 Query: 364 ADVAGTSEAVAVSPKRKEGPNRCSTCRKRVGLTGFNCRCGNMYCSLHRYSDKHDC 528 A+V G + + VSP+R+ G N C F R + C+ D H C Sbjct: 1595 ANVEGLMDIIVVSPQRQTGTNACGVNNGGCSHLCF-ARASDFVCACPDEPDSHPC 1648 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 59,622,569 Number of Sequences: 219361 Number of extensions: 1036988 Number of successful extensions: 3336 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 3166 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3334 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4643056080 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
