Clone Name | basd2i15 |
---|---|
Clone Library Name | barley_pub |
>RAD9B_HUMAN (Q6WBX8) Cell cycle checkpoint control protein RAD9B homolog (RAD9| homolog B) (hRAD9B) Length = 414 Score = 50.8 bits (120), Expect = 2e-06 Identities = 39/144 (27%), Positives = 68/144 (47%) Frame = -3 Query: 479 GRKKTHRISCSAESDVQTLALDRNRFPSRLAIRPRDLTRLLSNFQSSLQELTVIATEPAA 300 G K+TH I C ES + D+N + L I+PR L + F SS +E+T+ T Sbjct: 127 GIKRTHNI-CFQESQPLQVIFDKNVCTNTLMIQPRLLADAIVLFTSSQEEVTLAVTPLNF 185 Query: 299 VLPGVDDGTEGKAVELLSYIDPTKDDYDSRLHTQLWINPAEEFLEYEHAGDPVDVTFGVK 120 L ++ + D + +H+++++ ++EF ++ G ++TF K Sbjct: 186 CLKSSNEESM---------------DLSNAVHSEMFVG-SDEF-DFFQIGMDTEITFCFK 228 Query: 119 ELKAFLTFCEGCEVDILLFYEKAG 48 ELK LTF E I ++++ G Sbjct: 229 ELKGILTFSEATHAPISIYFDFPG 252
>RAD9B_BOVIN (Q5E9X8) Cell cycle checkpoint control protein RAD9B homolog (RAD9| homolog B) Length = 442 Score = 47.4 bits (111), Expect = 2e-05 Identities = 34/147 (23%), Positives = 62/147 (42%) Frame = -3 Query: 488 CLSGRKKTHRISCSAESDVQTLALDRNRFPSRLAIRPRDLTRLLSNFQSSLQELTVIATE 309 C G KK H + +Q + +N + L I+PR L + F SS +E+T+ T Sbjct: 140 CRHGIKKIHNVCFQGSRPLQVI-FQKNMCANTLVIQPRVLAEAIVLFTSSQEEVTLAVTP 198 Query: 308 PAAVLPGVDDGTEGKAVELLSYIDPTKDDYDSRLHTQLWINPAEEFLEYEHAGDPVDVTF 129 + ++ + D +++++++ P E ++ G ++TF Sbjct: 199 LKVCIKSSNEESM---------------DLTDSVYSEMFVGPDE--FDFFQIGIDTEITF 241 Query: 128 GVKELKAFLTFCEGCEVDILLFYEKAG 48 KELK LTF E I + ++ G Sbjct: 242 CFKELKGVLTFSEAIHAPIAIHFDFPG 268
>RAD9A_MOUSE (Q9Z0F6) Cell cycle checkpoint control protein RAD9A (EC 3.1.11.2)| (DNA repair exonuclease rad9 homolog A) (Rad9-like protein) (mRAD9) Length = 389 Score = 47.0 bits (110), Expect = 3e-05 Identities = 39/149 (26%), Positives = 65/149 (43%) Frame = -3 Query: 494 IHCLSGRKKTHRISCSAESDVQTLALDRNRFPSRLAIRPRDLTRLLSNFQSSLQELTVIA 315 +HC G KKTH +S +Q + D P L R L + +F +L E+T+ Sbjct: 112 LHCKYGVKKTHNLSFQDCESLQAV-FDPASCPHLLRTPARVLAEAVLSFPLALTEVTL-- 168 Query: 314 TEPAAVLPGVDDGTEGKAVELLSYIDPTKDDYDSRLHTQLWINPAEEFLEYEHAGDPVDV 135 G+ G+ V L SY + D + T+ I +E + HA + + V Sbjct: 169 --------GIG---RGRRVILRSYQEEEADSTSKAMVTETSI--GDEDFQQLHAPEGIAV 215 Query: 134 TFGVKELKAFLTFCEGCEVDILLFYEKAG 48 TF +KE + L+F E + + + ++ G Sbjct: 216 TFCLKEFRGLLSFAESANLPLTIHFDVPG 244
>RAD9A_HUMAN (Q99638) Cell cycle checkpoint control protein RAD9A (EC 3.1.11.2)| (DNA repair exonuclease rad9 homolog A) (hRAD9) Length = 391 Score = 43.9 bits (102), Expect = 2e-04 Identities = 37/149 (24%), Positives = 65/149 (43%) Frame = -3 Query: 494 IHCLSGRKKTHRISCSAESDVQTLALDRNRFPSRLAIRPRDLTRLLSNFQSSLQELTVIA 315 +HC G +KTH +S +Q + D P L R L + F +L E+T+ Sbjct: 112 LHCKFGVRKTHNLSFQDCESLQAV-FDPASCPHMLRAPARVLGEAVLPFSPALAEVTL-- 168 Query: 314 TEPAAVLPGVDDGTEGKAVELLSYIDPTKDDYDSRLHTQLWINPAEEFLEYEHAGDPVDV 135 G+ G+ V L SY + D + T++ + EE + A + V + Sbjct: 169 --------GIG---RGRRVILRSYHEEEADSTAKAMVTEMCL--GEEDFQQLQAQEGVAI 215 Query: 134 TFGVKELKAFLTFCEGCEVDILLFYEKAG 48 TF +KE + L+F E +++ + ++ G Sbjct: 216 TFCLKEFRGLLSFAESANLNLSIHFDAPG 244
>RAD9A_MACFA (Q4R5X9) Cell cycle checkpoint control protein RAD9A (EC 3.1.11.2)| (DNA repair exonuclease rad9 homolog A) Length = 379 Score = 43.5 bits (101), Expect = 3e-04 Identities = 37/149 (24%), Positives = 65/149 (43%) Frame = -3 Query: 494 IHCLSGRKKTHRISCSAESDVQTLALDRNRFPSRLAIRPRDLTRLLSNFQSSLQELTVIA 315 +HC G +KTH +S +Q + D P L R L + F +L E+T+ Sbjct: 101 LHCKFGVRKTHNLSFQDCESLQAV-FDPASCPHMLRAPARVLGEAVLPFPPALAEVTL-- 157 Query: 314 TEPAAVLPGVDDGTEGKAVELLSYIDPTKDDYDSRLHTQLWINPAEEFLEYEHAGDPVDV 135 G+ G+ V L SY + D + T++ + EE + A + V + Sbjct: 158 --------GIG---RGRRVILRSYHEEEADSTAKAMVTEMCL--GEEDFQQLQAQEGVAI 204 Query: 134 TFGVKELKAFLTFCEGCEVDILLFYEKAG 48 TF +KE + L+F E +++ + ++ G Sbjct: 205 TFCLKEFRGLLSFAESANLNLSIHFDAPG 233
>RAD9B_MOUSE (Q6WBX7) Cell cycle checkpoint control protein RAD9B homolog (RAD9| homolog B) (mRAD9B) Length = 403 Score = 41.2 bits (95), Expect = 0.002 Identities = 37/144 (25%), Positives = 66/144 (45%) Frame = -3 Query: 479 GRKKTHRISCSAESDVQTLALDRNRFPSRLAIRPRDLTRLLSNFQSSLQELTVIATEPAA 300 G K+TH + +S + +++ + L I+PR LT ++ S+ +E+T T Sbjct: 125 GIKRTHNVYFQ-DSQPLKIIFEKSLCANILMIKPRLLTEAIALLTSNQEEVTFSVTPGNF 183 Query: 299 VLPGVDDGTEGKAVELLSYIDPTKDDYDSRLHTQLWINPAEEFLEYEHAGDPVDVTFGVK 120 L + ELL D S +++++ P EEF ++ G ++TF K Sbjct: 184 CLKSLSG-------ELL--------DLTSSVYSEMSFGP-EEF-DFFQVGLDTEITFCFK 226 Query: 119 ELKAFLTFCEGCEVDILLFYEKAG 48 ELK LTF E + ++++ G Sbjct: 227 ELKGILTFSEVMHAPLAIYFDFPG 250
>RAD9B_RAT (Q499V3) Cell cycle checkpoint control protein RAD9B homolog (RAD9| homolog B) Length = 398 Score = 38.9 bits (89), Expect = 0.008 Identities = 37/146 (25%), Positives = 68/146 (46%), Gaps = 2/146 (1%) Frame = -3 Query: 479 GRKKTHRISCSAESDVQTLAL--DRNRFPSRLAIRPRDLTRLLSNFQSSLQELTVIATEP 306 G K+TH + D Q L + +++ + L I+PR L ++ S+ +E+T T Sbjct: 120 GIKRTHNVYFQ---DCQPLKILFEKSLCANILMIKPRLLAEAIALLTSNQEEVTFSVTPE 176 Query: 305 AAVLPGVDDGTEGKAVELLSYIDPTKDDYDSRLHTQLWINPAEEFLEYEHAGDPVDVTFG 126 L + G++++L S + ++++ P EEF ++ G ++TF Sbjct: 177 NFCLKS----SSGESLDLTSSV-----------YSEMSFGP-EEF-DFFQVGLDTEITFC 219 Query: 125 VKELKAFLTFCEGCEVDILLFYEKAG 48 KELK LTF E I ++++ G Sbjct: 220 FKELKGILTFSEVMHAPIAIYFDFPG 245
>PRD16_HUMAN (Q9HAZ2) PR domain zinc finger protein 16 (PR domain-containing| protein 16) (Transcription factor MEL1) Length = 1276 Score = 34.7 bits (78), Expect = 0.14 Identities = 19/43 (44%), Positives = 23/43 (53%) Frame = -2 Query: 432 ADSGARPQPLPQPPRHTATGPHAPALQFPVLAAGAHRYCHRAC 304 ADSG+ QPLP P + + P P L P+L G RY R C Sbjct: 916 ADSGSSLQPLPHHPFNFRSPP--PTLSDPILRKGKERYTCRYC 956
>PPE2_MOUSE (O35385) Serine/threonine-protein phosphatase with EF-hands 2 (EC| 3.1.3.16) (PPEF-2) Length = 757 Score = 32.3 bits (72), Expect = 0.71 Identities = 16/46 (34%), Positives = 25/46 (54%) Frame = +3 Query: 129 KCDIHGITSMLILQELLCWIDPQLCVQPTVVVIFGGVNVA*ELDCL 266 K IHG + LQ++ CW+ V V+V+ GGV+ +L+ L Sbjct: 259 KYKIHGKKILRTLQDVFCWLPLATLVDEKVLVLHGGVSDKTDLELL 304
>NFAC2_HUMAN (Q13469) Nuclear factor of activated T-cells, cytoplasmic 2 (T cell| transcription factor NFAT1) (NFAT pre-existing subunit) (NF-ATp) Length = 925 Score = 32.0 bits (71), Expect = 0.92 Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 10/65 (15%) Frame = -2 Query: 492 PLPQRA*EDAPDLVQRRVRCADS------GARPQ----PLPQPPRHTATGPHAPALQFPV 343 P+P+ A + +RR CA++ GA PQ P PQP H A H +P Sbjct: 237 PVPRPASRSSSPGAKRRHSCAEALVALPPGASPQRSRSPSPQPSSHVAPQDHGSPAGYPP 296 Query: 342 LAAGA 328 +A A Sbjct: 297 VAGSA 301
>PPE2_HUMAN (O14830) Serine/threonine-protein phosphatase with EF-hands 2 (EC| 3.1.3.16) (PPEF-2) Length = 753 Score = 31.2 bits (69), Expect = 1.6 Identities = 13/46 (28%), Positives = 25/46 (54%) Frame = +3 Query: 129 KCDIHGITSMLILQELLCWIDPQLCVQPTVVVIFGGVNVA*ELDCL 266 K +HG + LQ++ CW+ + V+++ GGV+ +L+ L Sbjct: 259 KYKVHGKEILRTLQDVFCWLPLATLIDEKVLILHGGVSDITDLELL 304
>Y1464_SYNY3 (P74557) UPF0026 protein slr1464| Length = 265 Score = 31.2 bits (69), Expect = 1.6 Identities = 18/49 (36%), Positives = 27/49 (55%) Frame = -3 Query: 374 DLTRLLSNFQSSLQELTVIATEPAAVLPGVDDGTEGKAVELLSYIDPTK 228 +L ++L+ Q+ QE T + VL D TE + +ELLS I PT+ Sbjct: 151 ELEQILTGIQTFQQEFTGELSVQTMVLQPWDQTTENRYLELLSLIKPTE 199
>MUC5B_HUMAN (Q9HC84) Mucin-5B precursor (Mucin 5 subtype B, tracheobronchial)| (High molecular weight salivary mucin MG1) (Sublingual gland mucin) Length = 5703 Score = 30.4 bits (67), Expect = 2.7 Identities = 23/89 (25%), Positives = 36/89 (40%), Gaps = 2/89 (2%) Frame = +1 Query: 73 ISTSHPSQNVKNAFNS--LTPNVTSTGSPACSYSKNSSAGLIHXXXXXXXXXXXXXXXXX 246 +ST+ PS + A S LT T+TG+ + +S+ G H Sbjct: 2534 MSTATPSSTPETAHTSTVLTATATTTGATGSVATPSSTPGTAHTTKVPTTTT-------- 2585 Query: 247 XXXXTAFPSVPSSTPGNTAAGSVAITVSS 333 T F + PSS+PG V I+ ++ Sbjct: 2586 ----TGFTATPSSSPGTALTPPVWISTTT 2610 Score = 28.9 bits (63), Expect = 7.8 Identities = 22/89 (24%), Positives = 35/89 (39%), Gaps = 2/89 (2%) Frame = +1 Query: 73 ISTSHPSQNVKNAFNS--LTPNVTSTGSPACSYSKNSSAGLIHXXXXXXXXXXXXXXXXX 246 +ST+ PS + S LT T+TG+ + +S+ G H Sbjct: 4488 MSTATPSSTPETVHTSTVLTTTATTTGATGSVATPSSTPGTAHTTKVPTTTT-------- 4539 Query: 247 XXXXTAFPSVPSSTPGNTAAGSVAITVSS 333 T F + PSS+PG V I+ ++ Sbjct: 4540 ----TGFTATPSSSPGTALTPPVWISTTT 4564
>ZMY15_HUMAN (Q9H091) Zinc finger MYND domain-containing protein 15| Length = 703 Score = 30.0 bits (66), Expect = 3.5 Identities = 13/22 (59%), Positives = 14/22 (63%) Frame = -2 Query: 426 SGARPQPLPQPPRHTATGPHAP 361 SGARP P P PP T + P AP Sbjct: 664 SGARPAPGPPPPSPTPSAPPAP 685
>HXA4_MOUSE (P06798) Homeobox protein Hox-A4 (Hox-1.4) (MH-3)| Length = 285 Score = 30.0 bits (66), Expect = 3.5 Identities = 14/26 (53%), Positives = 15/26 (57%), Gaps = 3/26 (11%) Frame = -2 Query: 423 GARPQPLPQPP---RHTATGPHAPAL 355 GA P P PQPP H A GP PA+ Sbjct: 106 GAHPSPAPQPPVPLGHCAPGPTTPAV 131
>MAST2_MOUSE (Q60592) Microtubule-associated serine/threonine-protein kinase 2| (EC 2.7.11.1) Length = 1734 Score = 30.0 bits (66), Expect = 3.5 Identities = 14/56 (25%), Positives = 29/56 (51%) Frame = -3 Query: 380 PRDLTRLLSNFQSSLQELTVIATEPAAVLPGVDDGTEGKAVELLSYIDPTKDDYDS 213 PR + L + L+E+ +++ + P DD EG+ V S P+++D+++ Sbjct: 400 PRYIVSQLGLTRDPLEEMAQLSSYDSPDTPETDDSVEGRGVSQPSQKTPSEEDFET 455
>VASP_MOUSE (P70460) Vasodilator-stimulated phosphoprotein (VASP)| Length = 374 Score = 29.6 bits (65), Expect = 4.6 Identities = 20/53 (37%), Positives = 22/53 (41%) Frame = -2 Query: 492 PLPQRA*EDAPDLVQRRVRCADSGARPQPLPQPPRHTATGPHAPALQFPVLAA 334 P P P L V A GA P P PP TA GP++ P LAA Sbjct: 171 PPPPPGPPPPPGLPSSGVSGAGHGAGAAPPPAPPLPTAQGPNSGGSGAPGLAA 223
>HXB4_HUMAN (P17483) Homeobox protein Hox-B4 (Hox-2F) (Hox-2.6)| Length = 251 Score = 29.6 bits (65), Expect = 4.6 Identities = 16/34 (47%), Positives = 16/34 (47%), Gaps = 2/34 (5%) Frame = -2 Query: 453 VQRRVRCADSGARPQPLPQPPRHTATG--PHAPA 358 VQR C D G P P P PP G P APA Sbjct: 62 VQRYAACRDPGPPPPPPPPPPPPPPPGLSPRAPA 95
>AGA1_YEAST (P32323) A-agglutinin attachment subunit precursor| Length = 725 Score = 29.6 bits (65), Expect = 4.6 Identities = 18/79 (22%), Positives = 34/79 (43%) Frame = +1 Query: 76 STSHPSQNVKNAFNSLTPNVTSTGSPACSYSKNSSAGLIHXXXXXXXXXXXXXXXXXXXX 255 STS S + ++ S +P+ TST S + S S +S + Sbjct: 246 STSQSSTSTSSSSTSTSPSSTSTSSSSTSTSPSSKS-----TSASSTSTSSYSTSTSPSL 300 Query: 256 XTAFPSVPSSTPGNTAAGS 312 ++ P++ S++P +T+ S Sbjct: 301 TSSSPTLASTSPSSTSISS 319
>TBA1_ENTHI (P31017) Tubulin alpha-1 chain| Length = 455 Score = 29.3 bits (64), Expect = 6.0 Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 11/66 (16%) Frame = -3 Query: 428 TLALDRNRFPSRLAIRPRDLTRLLS-----------NFQSSLQELTVIATEPAAVLPGVD 282 TL +D N FP+ L PRD ++S S+QELT +P +++ D Sbjct: 252 TLNVDLNEFPTNLVPFPRDHFAMMSYAPIVTPEKAIRQTLSVQELTSSLFDPNSLMIQCD 311 Query: 281 DGTEGK 264 D +GK Sbjct: 312 DINKGK 317
>HXB4_MOUSE (P10284) Homeobox protein Hox-B4 (Hox-2.6)| Length = 250 Score = 29.3 bits (64), Expect = 6.0 Identities = 13/25 (52%), Positives = 13/25 (52%) Frame = -2 Query: 465 APDLVQRRVRCADSGARPQPLPQPP 391 AP VQR C D G P P P PP Sbjct: 58 APCTVQRYAACRDPGPPPPPPPPPP 82
>GLIS3_MOUSE (Q6XP49) Zinc finger protein GLIS3 (GLI-similar 3)| Length = 780 Score = 28.9 bits (63), Expect = 7.8 Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 5/43 (11%) Frame = -2 Query: 432 ADSGARPQPLPQP-PRHTATG-PHAPALQFPVLA---AGAHRY 319 A +G P P+ P P H G PH P+ Q P L AGA R+ Sbjct: 575 AGAGPPPHPVSHPSPGHNVQGSPHNPSSQLPPLTAVDAGAERF 617
>PP14D_HUMAN (Q9NXH3) Protein phosphatase 1 regulatory subunit 14D| (Gastrointestinal and brain-specific PP1-inhibitory protein 1) (GBPI-1) Length = 145 Score = 28.9 bits (63), Expect = 7.8 Identities = 12/38 (31%), Positives = 22/38 (57%) Frame = -3 Query: 494 IHCLSGRKKTHRISCSAESDVQTLALDRNRFPSRLAIR 381 +H SGR++T ++S + + R+R PSRL ++ Sbjct: 23 VHWASGRRRTSSTDSESKSHPDSSKIPRSRRPSRLTVK 60
>FOR3_SCHPO (O94532) Formin-3| Length = 1461 Score = 28.9 bits (63), Expect = 7.8 Identities = 13/32 (40%), Positives = 15/32 (46%) Frame = -2 Query: 414 PQPLPQPPRHTATGPHAPALQFPVLAAGAHRY 319 P P P PP GP P P ++AG RY Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRY 792
>VASP_BOVIN (Q2TA49) Vasodilator-stimulated phosphoprotein (VASP)| Length = 382 Score = 28.9 bits (63), Expect = 7.8 Identities = 19/53 (35%), Positives = 20/53 (37%) Frame = -2 Query: 492 PLPQRA*EDAPDLVQRRVRCADSGARPQPLPQPPRHTATGPHAPALQFPVLAA 334 P P P L V A GA P P PP TA GP P LA+ Sbjct: 178 PPPPPGPPPPPGLSSSGVSAATQGAGGGPPPAPPLPTAQGPSGGGTGAPSLAS 230
>PAK4_HUMAN (O96013) Serine/threonine-protein kinase PAK 4 (EC 2.7.11.1)| (p21-activated kinase 4) (PAK-4) Length = 591 Score = 28.9 bits (63), Expect = 7.8 Identities = 16/53 (30%), Positives = 24/53 (45%) Frame = +1 Query: 25 AGANRTGAPAFS*NRRISTSHPSQNVKNAFNSLTPNVTSTGSPACSYSKNSSA 183 +GA F+ R T HPS+ + + + PN S G A S +SS+ Sbjct: 195 SGAKLAAGRPFNTYPRADTDHPSRGAQGEPHDVAPNGPSAGGLAIPQSSSSSS 247
>GRP7_DAUCA (P37704) Glycine-rich protein DC7.1 precursor| Length = 96 Score = 28.9 bits (63), Expect = 7.8 Identities = 9/14 (64%), Positives = 10/14 (71%) Frame = -2 Query: 333 GAHRYCHRACCSVA 292 G H YCH +CCS A Sbjct: 69 GCHHYCHGSCCSAA 82
>PPE1_HUMAN (O14829) Serine/threonine-protein phosphatase with EF-hands 1 (EC| 3.1.3.16) (PPEF-1) (Protein phosphatase with EF calcium-binding domain) (PPEF) (Serine/threonine-protein phosphatase 7) (PP7) Length = 653 Score = 28.9 bits (63), Expect = 7.8 Identities = 14/46 (30%), Positives = 24/46 (52%) Frame = +3 Query: 129 KCDIHGITSMLILQELLCWIDPQLCVQPTVVVIFGGVNVA*ELDCL 266 K +HG + IL+E W+ V ++VI GG++ +L+ L Sbjct: 252 KYKLHGKRILQILEEFYAWLPIGTIVDNEILVIHGGISETTDLNLL 297 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 70,770,104 Number of Sequences: 219361 Number of extensions: 1456552 Number of successful extensions: 5831 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 5310 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5802 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3465624120 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)