Clone Name | basd2i15 |
---|---|
Clone Library Name | barley_pub |
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 216 bits (109), Expect = 5e-53 Identities = 157/173 (90%) Strand = Plus / Plus Query: 301 gcagcaggctcggtggcaataacggtgagctcctgcagcgaggactggaaattggagagc 360 |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 12842831 gcagcaggatcggtggcaataaccgtgagctcctgcagcgaggactggaaattggagagc 12842890 Query: 361 aggcgcgtgaggtcccgtggccgtatggcgaggcggctggggaagcggttgcggtcgagc 420 ||||||| |||||||| ||||| |||||||||||||||| |||| | ||||||||||| Sbjct: 12842891 aggcgcgccaggtcccgcggccggatggcgaggcggctggagaagttgctgcggtcgagc 12842950 Query: 421 gccagagtctgcacatcggactcggcgctgcacgagatccggtgcgtcttctt 473 ||||| |||||||| |||||||| |||||||||| ||||| || ||||||||| Sbjct: 12842951 gccagcgtctgcacctcggactccgcgctgcacgcgatccagtacgtcttctt 12843003 Score = 83.8 bits (42), Expect = 5e-13 Identities = 54/58 (93%) Strand = Plus / Plus Query: 47 cgccagccttctcatagaataggagaatatcaacctcacatccttcacaaaatgttaa 104 |||||||||||| | |||||||||| |||||||| ||||||||||||||||||||||| Sbjct: 12841959 cgccagccttctgaaagaataggaggatatcaacttcacatccttcacaaaatgttaa 12842016 Score = 71.9 bits (36), Expect = 2e-09 Identities = 81/96 (84%) Strand = Plus / Plus Query: 117 ttctttgaccccaaatgtgacatccacgggatcaccagcatgctcatactccaagaactc 176 |||||| ||||| |||||||||||||| | |||||| | ||| ||||||||| |||||| Sbjct: 12842535 ttctttcaccccgaatgtgacatccactgaatcaccggaatgtacatactccacgaactc 12842594 Query: 177 ctctgctggattgatccacagttgtgtgtgcagcct 212 ||||| ||| | |||||||| || ||||||||||| Sbjct: 12842595 ctctgttgggtcaatccacagctgcgtgtgcagcct 12842630 Score = 54.0 bits (27), Expect = 4e-04 Identities = 36/39 (92%) Strand = Plus / Plus Query: 235 gggtcaatgtagcttaggagctcgactgccttcccctca 273 ||||||||||||||| ||||||||| |||||||||||| Sbjct: 12842759 gggtcaatgtagcttctgagctcgacagccttcccctca 12842797
>gb|AC148339.1| Oryza sativa (japonica cultivar-group) chromosome 3 clone B1339A06, complete sequence Length = 132243 Score = 216 bits (109), Expect = 5e-53 Identities = 157/173 (90%) Strand = Plus / Plus Query: 301 gcagcaggctcggtggcaataacggtgagctcctgcagcgaggactggaaattggagagc 360 |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 81047 gcagcaggatcggtggcaataaccgtgagctcctgcagcgaggactggaaattggagagc 81106 Query: 361 aggcgcgtgaggtcccgtggccgtatggcgaggcggctggggaagcggttgcggtcgagc 420 ||||||| |||||||| ||||| |||||||||||||||| |||| | ||||||||||| Sbjct: 81107 aggcgcgccaggtcccgcggccggatggcgaggcggctggagaagttgctgcggtcgagc 81166 Query: 421 gccagagtctgcacatcggactcggcgctgcacgagatccggtgcgtcttctt 473 ||||| |||||||| |||||||| |||||||||| ||||| || ||||||||| Sbjct: 81167 gccagcgtctgcacctcggactccgcgctgcacgcgatccagtacgtcttctt 81219 Score = 83.8 bits (42), Expect = 5e-13 Identities = 54/58 (93%) Strand = Plus / Plus Query: 47 cgccagccttctcatagaataggagaatatcaacctcacatccttcacaaaatgttaa 104 |||||||||||| | |||||||||| |||||||| ||||||||||||||||||||||| Sbjct: 80175 cgccagccttctgaaagaataggaggatatcaacttcacatccttcacaaaatgttaa 80232 Score = 71.9 bits (36), Expect = 2e-09 Identities = 81/96 (84%) Strand = Plus / Plus Query: 117 ttctttgaccccaaatgtgacatccacgggatcaccagcatgctcatactccaagaactc 176 |||||| ||||| |||||||||||||| | |||||| | ||| ||||||||| |||||| Sbjct: 80751 ttctttcaccccgaatgtgacatccactgaatcaccggaatgtacatactccacgaactc 80810 Query: 177 ctctgctggattgatccacagttgtgtgtgcagcct 212 ||||| ||| | |||||||| || ||||||||||| Sbjct: 80811 ctctgttgggtcaatccacagctgcgtgtgcagcct 80846 Score = 54.0 bits (27), Expect = 4e-04 Identities = 36/39 (92%) Strand = Plus / Plus Query: 235 gggtcaatgtagcttaggagctcgactgccttcccctca 273 ||||||||||||||| ||||||||| |||||||||||| Sbjct: 80975 gggtcaatgtagcttctgagctcgacagccttcccctca 81013
>gb|AC118675.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0094H06, from chromosome 3, complete sequence Length = 118075 Score = 216 bits (109), Expect = 5e-53 Identities = 157/173 (90%) Strand = Plus / Minus Query: 301 gcagcaggctcggtggcaataacggtgagctcctgcagcgaggactggaaattggagagc 360 |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 96678 gcagcaggatcggtggcaataaccgtgagctcctgcagcgaggactggaaattggagagc 96619 Query: 361 aggcgcgtgaggtcccgtggccgtatggcgaggcggctggggaagcggttgcggtcgagc 420 ||||||| |||||||| ||||| |||||||||||||||| |||| | ||||||||||| Sbjct: 96618 aggcgcgccaggtcccgcggccggatggcgaggcggctggagaagttgctgcggtcgagc 96559 Query: 421 gccagagtctgcacatcggactcggcgctgcacgagatccggtgcgtcttctt 473 ||||| |||||||| |||||||| |||||||||| ||||| || ||||||||| Sbjct: 96558 gccagcgtctgcacctcggactccgcgctgcacgcgatccagtacgtcttctt 96506 Score = 83.8 bits (42), Expect = 5e-13 Identities = 54/58 (93%) Strand = Plus / Minus Query: 47 cgccagccttctcatagaataggagaatatcaacctcacatccttcacaaaatgttaa 104 |||||||||||| | |||||||||| |||||||| ||||||||||||||||||||||| Sbjct: 97550 cgccagccttctgaaagaataggaggatatcaacttcacatccttcacaaaatgttaa 97493 Score = 71.9 bits (36), Expect = 2e-09 Identities = 81/96 (84%) Strand = Plus / Minus Query: 117 ttctttgaccccaaatgtgacatccacgggatcaccagcatgctcatactccaagaactc 176 |||||| ||||| |||||||||||||| | |||||| | ||| ||||||||| |||||| Sbjct: 96974 ttctttcaccccgaatgtgacatccactgaatcaccggaatgtacatactccacgaactc 96915 Query: 177 ctctgctggattgatccacagttgtgtgtgcagcct 212 ||||| ||| | |||||||| || ||||||||||| Sbjct: 96914 ctctgttgggtcaatccacagctgcgtgtgcagcct 96879 Score = 54.0 bits (27), Expect = 4e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 235 gggtcaatgtagcttaggagctcgactgccttcccctca 273 ||||||||||||||| ||||||||| |||||||||||| Sbjct: 96750 gggtcaatgtagcttctgagctcgacagccttcccctca 96712
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 216 bits (109), Expect = 5e-53 Identities = 157/173 (90%) Strand = Plus / Plus Query: 301 gcagcaggctcggtggcaataacggtgagctcctgcagcgaggactggaaattggagagc 360 |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 12839594 gcagcaggatcggtggcaataaccgtgagctcctgcagcgaggactggaaattggagagc 12839653 Query: 361 aggcgcgtgaggtcccgtggccgtatggcgaggcggctggggaagcggttgcggtcgagc 420 ||||||| |||||||| ||||| |||||||||||||||| |||| | ||||||||||| Sbjct: 12839654 aggcgcgccaggtcccgcggccggatggcgaggcggctggagaagttgctgcggtcgagc 12839713 Query: 421 gccagagtctgcacatcggactcggcgctgcacgagatccggtgcgtcttctt 473 ||||| |||||||| |||||||| |||||||||| ||||| || ||||||||| Sbjct: 12839714 gccagcgtctgcacctcggactccgcgctgcacgcgatccagtacgtcttctt 12839766 Score = 83.8 bits (42), Expect = 5e-13 Identities = 54/58 (93%) Strand = Plus / Plus Query: 47 cgccagccttctcatagaataggagaatatcaacctcacatccttcacaaaatgttaa 104 |||||||||||| | |||||||||| |||||||| ||||||||||||||||||||||| Sbjct: 12838722 cgccagccttctgaaagaataggaggatatcaacttcacatccttcacaaaatgttaa 12838779 Score = 71.9 bits (36), Expect = 2e-09 Identities = 81/96 (84%) Strand = Plus / Plus Query: 117 ttctttgaccccaaatgtgacatccacgggatcaccagcatgctcatactccaagaactc 176 |||||| ||||| |||||||||||||| | |||||| | ||| ||||||||| |||||| Sbjct: 12839298 ttctttcaccccgaatgtgacatccactgaatcaccggaatgtacatactccacgaactc 12839357 Query: 177 ctctgctggattgatccacagttgtgtgtgcagcct 212 ||||| ||| | |||||||| || ||||||||||| Sbjct: 12839358 ctctgttgggtcaatccacagctgcgtgtgcagcct 12839393 Score = 54.0 bits (27), Expect = 4e-04 Identities = 36/39 (92%) Strand = Plus / Plus Query: 235 gggtcaatgtagcttaggagctcgactgccttcccctca 273 ||||||||||||||| ||||||||| |||||||||||| Sbjct: 12839522 gggtcaatgtagcttctgagctcgacagccttcccctca 12839560
>dbj|AK065579.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013031C20, full insert sequence Length = 1561 Score = 216 bits (109), Expect = 5e-53 Identities = 172/193 (89%) Strand = Plus / Minus Query: 301 gcagcaggctcggtggcaataacggtgagctcctgcagcgaggactggaaattggagagc 360 |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 544 gcagcaggaccggtggcaataaccgtgagctcctgcagcgaggactggaaattggagagc 485 Query: 361 aggcgcgtgaggtcccgtggccgtatggcgaggcggctggggaagcggttgcggtcgagc 420 ||||||| |||||||| ||||| |||||||||||||||| |||| | ||||||||||| Sbjct: 484 aggcgcgccaggtcccgcggccggatggcgaggcggctggagaagttgctgcggtcgagc 425 Query: 421 gccagagtctgcacatcggactcggcgctgcacgagatccggtgcgtcttcttacgcccg 480 ||||| |||||||| |||||||| |||||||||| ||||| || ||||||||| |||| Sbjct: 424 gccagcgtctgcacctcggactccgcgctgcacgcgatccagtacgtcttcttcaccccg 365 Query: 481 ctgaggcagtgga 493 |||||||||||| Sbjct: 364 ttgaggcagtgga 352 Score = 194 bits (98), Expect = 2e-46 Identities = 206/242 (85%) Strand = Plus / Minus Query: 32 ccaacaggacaggtgcgccagccttctcatagaataggagaatatcaacctcacatcctt 91 |||| |||||||| |||||||||||| | |||||||||| |||||||| |||||||||| Sbjct: 819 ccaaaaggacaggctcgccagccttctgaaagaataggaggatatcaacttcacatcctt 760 Query: 92 cacaaaatgttaaaaatgccttcaattctttgaccccaaatgtgacatccacgggatcac 151 ||||||||||||| || ||||| | |||||| ||||| |||||||||||||| | ||||| Sbjct: 759 cacaaaatgttaagaaagccttgagttctttcaccccgaatgtgacatccactgaatcac 700 Query: 152 cagcatgctcatactccaagaactcctctgctggattgatccacagttgtgtgtgcagcc 211 | | ||| ||||||||| |||||||||| ||| | |||||||| || |||||||||| Sbjct: 699 cggaatgtacatactccactaactcctctgttgggtcaatccacagctgcgtgtgcagcc 640 Query: 212 tactgtcgtagtcatctttggtggggtcaatgtagcttaggagctcgactgccttcccct 271 | | ||| |||||||||| || ||||||||||||||| ||||||||| |||||||||| Sbjct: 639 tcgtatcgcagtcatctttcgtcgggtcaatgtagcttctgagctcgacagccttcccct 580 Query: 272 ca 273 || Sbjct: 579 ca 578
>gb|DQ481667.1| Takifugu rubripes HoxCa gene cluster, complete sequence Length = 378763 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Minus Query: 266 tcccctcagtgccatcatcgac 287 |||||||||||||||||||||| Sbjct: 322468 tcccctcagtgccatcatcgac 322447
>dbj|AB190715.1| Burkholderia gladioli gene for DNA-directed RNA polymerase subunit D, partial cds, strain: MAFF 301064 Length = 829 Score = 44.1 bits (22), Expect = 0.43 Identities = 25/26 (96%) Strand = Plus / Plus Query: 413 ggtcgagcgccagagtctgcacatcg 438 |||||||||||||| ||||||||||| Sbjct: 542 ggtcgagcgccagattctgcacatcg 567
>emb|AL109759.4|CNS018OW Human chromosome 14 DNA sequence BAC R-898B23 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 201794 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 78 aacctcacatccttcacaaaa 98 ||||||||||||||||||||| Sbjct: 32707 aacctcacatccttcacaaaa 32687
>ref|XM_592709.2| PREDICTED: Bos taurus similar to Cardiotrophin-1 (CT-1) (LOC514803), mRNA Length = 804 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 474 acgcccgctgaggcagtgga 493 |||||||||||||||||||| Sbjct: 698 acgcccgctgaggcagtgga 679
>gb|AY375803.1| Homo sapiens 4AOH 100048 LBF MHC class II antigen (HLA-DPB1) gene, HLA-DPB1*1701 allele, exon 2 and partial cds Length = 438 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 258 gactgccttcccctcagtgc 277 |||||||||||||||||||| Sbjct: 129 gactgccttcccctcagtgc 148
>gb|AY375802.1| Homo sapiens 4AOH 100063 PLH MHC class II antigen (HLA-DPB1) gene, HLA-DPB1*1501 allele, exon 2 and partial cds Length = 460 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 258 gactgccttcccctcagtgc 277 |||||||||||||||||||| Sbjct: 145 gactgccttcccctcagtgc 164
>gb|AY375801.1| Homo sapiens 10IHWS 9076 T7526 MHC class II antigen (HLA-DPB1) gene, HLA-DPB1*1301 allele, exon 2 and partial cds Length = 454 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 258 gactgccttcccctcagtgc 277 |||||||||||||||||||| Sbjct: 145 gactgccttcccctcagtgc 164
>gb|AY375800.1| Homo sapiens 10IHWS 9003 KAS116 MHC class II antigen (HLA-DPB1) gene, HLA-DPB1*1301 allele, exon 2 and partial cds Length = 460 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 258 gactgccttcccctcagtgc 277 |||||||||||||||||||| Sbjct: 145 gactgccttcccctcagtgc 164
>gb|AY375799.1| Homo sapiens 10IHWS 9034 SAVC MHC class II antigen (HLA-DPB1) gene, HLA-DPB1*1001 allele, exon 2 and partial cds Length = 454 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 258 gactgccttcccctcagtgc 277 |||||||||||||||||||| Sbjct: 145 gactgccttcccctcagtgc 164
>gb|AY375798.1| Homo sapiens 4AOH 100065 HARA MHC class II antigen (HLA-DPB1) gene, HLA-DPB1*0901 allele, exon 2 and partial cds Length = 453 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 258 gactgccttcccctcagtgc 277 |||||||||||||||||||| Sbjct: 145 gactgccttcccctcagtgc 164
>gb|AY375797.1| Homo sapiens 4AOH 100049 WHO NP199 MHC class II antigen (HLA-DPB1) gene, HLA-DPB1*0501 allele, exon 2 and partial cds Length = 460 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 258 gactgccttcccctcagtgc 277 |||||||||||||||||||| Sbjct: 145 gactgccttcccctcagtgc 164
>gb|AY375796.1| Homo sapiens 4AOH 100024 AMALA MHC class II antigen (HLA-DPB1) gene, HLA-DPB1*0402 allele, exon 2 and partial cds Length = 456 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 258 gactgccttcccctcagtgc 277 |||||||||||||||||||| Sbjct: 141 gactgccttcccctcagtgc 160
>gb|AY375795.1| Homo sapiens 4AOH 100032 DKB MHC class II antigen (HLA-DPB1) gene, HLA-DPB1*0401 allele, exon 2 and partial cds Length = 452 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 258 gactgccttcccctcagtgc 277 |||||||||||||||||||| Sbjct: 145 gactgccttcccctcagtgc 164
>gb|AY375794.1| Homo sapiens 4AOH 100045 COX MHC class II antigen (HLA-DPB1) gene, HLA-DPB1*0301 allele, exon 2 and partial cds Length = 454 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 258 gactgccttcccctcagtgc 277 |||||||||||||||||||| Sbjct: 145 gactgccttcccctcagtgc 164
>gb|AY375793.1| Homo sapiens 4AOH 100063 TAB089 MHC class II antigen (HLA-DPB1) gene, HLA-DPB1*0202 allele, exon 2 and partial cds Length = 454 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 258 gactgccttcccctcagtgc 277 |||||||||||||||||||| Sbjct: 145 gactgccttcccctcagtgc 164
>gb|AY375792.1| Homo sapiens 4AOH 100020 BM16 MHC class II antigen (HLA-DPB1) gene, HLA-DPB1*02012 allele, exon 2 and partial cds Length = 454 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 258 gactgccttcccctcagtgc 277 |||||||||||||||||||| Sbjct: 145 gactgccttcccctcagtgc 164
>gb|AY375777.1| Homo sapiens 4AOH 100041 HO104 MHC class II antigen (HLA-DPB1) gene, HLA-DPB1*0401 allele, exon 2 and partial cds Length = 452 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 258 gactgccttcccctcagtgc 277 |||||||||||||||||||| Sbjct: 145 gactgccttcccctcagtgc 164
>gb|AY375773.1| Homo sapiens 10IHWS 9059 SLE005 MHC class II antigen (HLA-DPB1) gene, HLA-DPB1*0301 allele, exon 2 and partial cds Length = 454 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 258 gactgccttcccctcagtgc 277 |||||||||||||||||||| Sbjct: 145 gactgccttcccctcagtgc 164
>gb|AY375784.1| Homo sapiens 4AOH 100062 HOKKAIDO MHC class II antigen (HLA-DPB1) gene, HLA-DPB1*0501 allele, exon 2 and partial cds Length = 460 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 258 gactgccttcccctcagtgc 277 |||||||||||||||||||| Sbjct: 145 gactgccttcccctcagtgc 164
>gb|AY375778.1| Homo sapiens 4AOH 100055 YEO AM MHC class II antigen (HLA-DPB1) gene, HLA-DPB1*0401 allele, exon 2 and partial cds Length = 452 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 258 gactgccttcccctcagtgc 277 |||||||||||||||||||| Sbjct: 145 gactgccttcccctcagtgc 164
>gb|AY375789.1| Homo sapiens 10IHWS 9043 BM21 MHC class II antigen (HLA-DPB1) gene, HLA-DPB1*1001 allele, exon 2 and partial cds Length = 454 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 258 gactgccttcccctcagtgc 277 |||||||||||||||||||| Sbjct: 145 gactgccttcccctcagtgc 164
>gb|AY375786.1| Homo sapiens 4AOH 100066 KAWASAKI MHC class II antigen (HLA-DPB1) gene, HLA-DPB1*0901 allele, exon 2 and partial cds Length = 453 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 258 gactgccttcccctcagtgc 277 |||||||||||||||||||| Sbjct: 145 gactgccttcccctcagtgc 164
>gb|AY375782.1| Homo sapiens 4AOH 100060 WHO NP439 MHC class II antigen (HLA-DPB1) gene, HLA-DPB1*0501 allele, exon 2 and partial cds Length = 460 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 258 gactgccttcccctcagtgc 277 |||||||||||||||||||| Sbjct: 145 gactgccttcccctcagtgc 164
>gb|AC126125.6| Rattus norvegicus 14 BAC CH230-25F8 (Children's Hospital Oakland Research Institute) complete sequence Length = 223844 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 23 aggctggagccaacaggaca 42 |||||||||||||||||||| Sbjct: 158746 aggctggagccaacaggaca 158765
>ref|XM_651762.1| Entamoeba histolytica HM-1:IMSS hypothetical protein (7.t00015) partial mRNA Length = 1071 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 64 aataggagaatatcaacctc 83 |||||||||||||||||||| Sbjct: 495 aataggagaatatcaacctc 514
>gb|AY184478.1| Plum pox virus isolate SoC polyprotein mRNA, complete cds Length = 9795 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 161 catactccaagaactcctctgctg 184 |||| ||||||||||||||||||| Sbjct: 3420 catattccaagaactcctctgctg 3397
>emb|BX120009.10| Human DNA sequence from clone DASS-227B13 on chromosome 6, complete sequence Length = 64380 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 258 gactgccttcccctcagtgc 277 |||||||||||||||||||| Sbjct: 12644 gactgccttcccctcagtgc 12663
>emb|AL845446.7| Human DNA sequence from clone DAQB-79P13 on chromosome 6 Contains the 3' end of the HLA-DPB1 gene for the major histocompatibility complex, class II, DP beta 1, the HLA-DPA2 pseudogene for major histocompatibility complex, class II, DP alpha 2, the COL11A2P pseudogene for collagen, type X1, alpha 2, the HLA-DPB2 pseudogene for the major histocompatibility complex, class II, DP beta 2, the DAQB-79P13.6 gene for a novel transcript that shares 2 exons with HLA-DPB2, the HLA-DPA3 pseudogene for the major histocompatibility complex, class II, DP alpha 2, HCG24 gene for HLA complex group 24, the 3' end of the COL11A2 gene for collagen type XI alpha 2 and 1 CpG island, complete sequence Length = 93842 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 258 gactgccttcccctcagtgc 277 |||||||||||||||||||| Sbjct: 926 gactgccttcccctcagtgc 945
>emb|AL805913.4| Human DNA sequence from clone DAQB-22D21 on chromosome 6 Contains the 3' end of the BRD2 gene for bromodomain containing 2, the HLA-DOA gene for the major histocompatibility complex, class II, DO alpha, the HLA-DPA1 gene for the major histocompatibility complex, class II, DP alpha 1, the RPL32P1 pseudogene for ribosomal protein L32 pseudogene 1, the 3' end of the HLA-DPB1 gene for the major histocompatibility complex, class II, DP beta 1 and 1 CpG isalnd, complete sequence Length = 106728 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 258 gactgccttcccctcagtgc 277 |||||||||||||||||||| Sbjct: 105654 gactgccttcccctcagtgc 105673
>emb|AL662824.9| Human DNA sequence from clone XXbac-22I16 on chromosome 6 contains the HLA-DPA1 gene for major histocompatibility complex, class II, DP alpha 1, the HLA-DPB1 gene for major histocompatibility complex, class II, DP beta 1, a ribosomal protein L32 (RPL32) pseudogene, the HLA-DPA2 pseudogene for major histocompatibility complex, class II, DP alpha 2, a pseudogene similar to part of collagens, a novel protein similar to major histocompatibility complex, class II, DP beta 2 (pseudogene), a major histocompatibility complex, class II, DP beta 1 pseudogene, two putative novel transcripts, the COL11A2 gene for collagen, type XI, alpha 2, the RXRB gene for retinoid X receptor, beta, the HKE4 gene for HLA-class II region expressed gene KE4, the 5' end of the HSD17B8 gene for hydroxysteroid (17-beta) dehydrogenase 8 and four CpG islands, complete sequence Length = 187964 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 258 gactgccttcccctcagtgc 277 |||||||||||||||||||| Sbjct: 62357 gactgccttcccctcagtgc 62376
>emb|AL645931.7| Human DNA sequence from clone XXbac-138A21 on chromosome 6 Contains the HLA-DOA, HLA-DPA1 and HLA-DPB1 genes for major histocompatibility complex class II proteins DO alpha, DP alpha 1 and DP beta 1, the HLA-DPA2 major histocompatibility complex class II DP alpha 2 pseudogene, ribosomal protein L32 pseudogene RPL32P1, a pseudogene similar to part of collagens, the 5' end of an HLA class II histocompatibility antigen D or S beta pseudogene, the 5' end of a novel protein similar to major histocompatibility complex class II DP beta 1 precursor and a CpG island, complete sequence Length = 124899 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 258 gactgccttcccctcagtgc 277 |||||||||||||||||||| Sbjct: 88329 gactgccttcccctcagtgc 88348
>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence Length = 4895836 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 411 gcggtcgagcgccagagtctgcac 434 |||||||||||| ||||||||||| Sbjct: 767524 gcggtcgagcgctagagtctgcac 767547
>emb|AL353615.37| Human DNA sequence from clone RP11-555H7 on chromosome 9 Contains a gene for a novel protein (MGC35463), complete sequence Length = 107891 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 79 acctcacatccttcacaaaa 98 |||||||||||||||||||| Sbjct: 67316 acctcacatccttcacaaaa 67335
>ref|XM_792445.1| PREDICTED: Strongylocentrotus purpuratus similar to IBD2834 (LOC592947), partial mRNA Length = 969 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 214 ctgtcgtagtcatctttggt 233 |||||||||||||||||||| Sbjct: 365 ctgtcgtagtcatctttggt 384
>emb|X02228.1|HSHLADPB Human HLA-DP-beta 1 gene and HLA-DP-alpha-1 gene exon 1 Length = 14782 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 258 gactgccttcccctcagtgc 277 |||||||||||||||||||| Sbjct: 7365 gactgccttcccctcagtgc 7384
>emb|BX640439.1| Bordetella bronchiseptica strain RB50, complete genome; segment 3/16 Length = 346362 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 276 gccatcatcgacgccaggca 295 |||||||||||||||||||| Sbjct: 297910 gccatcatcgacgccaggca 297891
>emb|BX640425.1| Bordetella parapertussis strain 12822, complete genome; segment 3/14 Length = 348257 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 276 gccatcatcgacgccaggca 295 |||||||||||||||||||| Sbjct: 195126 gccatcatcgacgccaggca 195107
>emb|CR759795.4| Human DNA sequence from clone DAMC-206D4 on chromosome 6, complete sequence Length = 119898 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 258 gactgccttcccctcagtgc 277 |||||||||||||||||||| Sbjct: 82757 gactgccttcccctcagtgc 82776
>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome Length = 7074893 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 396 gctggggaagcggttgcggtcgag 419 ||||| |||||||||||||||||| Sbjct: 6559725 gctggtgaagcggttgcggtcgag 6559748
>emb|CR847849.5| Human DNA sequence from clone DAMA-245O6 on chromosome 6, complete sequence Length = 88163 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 258 gactgccttcccctcagtgc 277 |||||||||||||||||||| Sbjct: 24775 gactgccttcccctcagtgc 24794
>emb|CR759904.5| Human DNA sequence from clone DAAP-277G18 on chromosome 6, complete sequence Length = 86480 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 258 gactgccttcccctcagtgc 277 |||||||||||||||||||| Sbjct: 60801 gactgccttcccctcagtgc 60820
>emb|CR762479.5| Human DNA sequence from clone DADB-22N23 on chromosome 6, complete sequence Length = 35870 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 258 gactgccttcccctcagtgc 277 |||||||||||||||||||| Sbjct: 11253 gactgccttcccctcagtgc 11272
>gb|AY603394.1| Homo sapiens isolate Na97 MHC class II antigen (HLA-DPB1) gene, intron 1 Length = 466 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 258 gactgccttcccctcagtgc 277 |||||||||||||||||||| Sbjct: 188 gactgccttcccctcagtgc 207
>gb|AY603393.1| Homo sapiens isolate GD62 MHC class II antigen (HLA-DPB1) gene, intron 1 Length = 466 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 258 gactgccttcccctcagtgc 277 |||||||||||||||||||| Sbjct: 188 gactgccttcccctcagtgc 207
>gb|AY603392.1| Homo sapiens isolate La69 MHC class II antigen (HLA-DPB1) gene, intron 1 Length = 466 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 258 gactgccttcccctcagtgc 277 |||||||||||||||||||| Sbjct: 188 gactgccttcccctcagtgc 207
>gb|AY603391.1| Homo sapiens isolate Na91 MHC class II antigen (HLA-DPB1) gene, intron 1 Length = 466 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 258 gactgccttcccctcagtgc 277 |||||||||||||||||||| Sbjct: 188 gactgccttcccctcagtgc 207
>gb|AY603390.1| Homo sapiens isolate Na95 MHC class II antigen (HLA-DPB1) gene, intron 1 Length = 466 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 258 gactgccttcccctcagtgc 277 |||||||||||||||||||| Sbjct: 188 gactgccttcccctcagtgc 207
>gb|AY603389.1| Homo sapiens isolate Li10 MHC class II antigen (HLA-DPB1) gene, intron 1 Length = 466 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 258 gactgccttcccctcagtgc 277 |||||||||||||||||||| Sbjct: 188 gactgccttcccctcagtgc 207
>gb|AY603388.1| Homo sapiens isolate Pu31 MHC class II antigen (HLA-DPB1) gene, intron 1 Length = 466 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 258 gactgccttcccctcagtgc 277 |||||||||||||||||||| Sbjct: 188 gactgccttcccctcagtgc 207
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 290 caggcaacactgcagcaggc 309 |||||||||||||||||||| Sbjct: 10204159 caggcaacactgcagcaggc 10204140
>emb|Y09851.2|PPPNIB Plum pox potyvirus gene for polyprotein Length = 9795 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 161 catactccaagaactcctctgctg 184 |||| ||||||||||||||||||| Sbjct: 3420 catattccaagaactcctctgctg 3397
>dbj|AP005536.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0055M07 Length = 150901 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 290 caggcaacactgcagcaggc 309 |||||||||||||||||||| Sbjct: 76525 caggcaacactgcagcaggc 76506
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 396 gctggggaagcggttgcggtcgag 419 ||||| |||||||||||||||||| Sbjct: 5513413 gctggtgaagcggttgcggtcgag 5513436
>emb|CT009497.8| Human DNA sequence from clone DAAP-90E5 on chromosome 6, complete sequence Length = 63203 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 258 gactgccttcccctcagtgc 277 |||||||||||||||||||| Sbjct: 8151 gactgccttcccctcagtgc 8170
>emb|CR937007.1| uncultured archaeon fos122a6+28b5 Length = 62584 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 136 acatccacgggatcaccagc 155 |||||||||||||||||||| Sbjct: 33564 acatccacgggatcaccagc 33545
>emb|AL670544.7| Mouse DNA sequence from clone RP23-16G8 on chromosome X, complete sequence Length = 236946 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 98 atgttaaaaatgccttcaat 117 |||||||||||||||||||| Sbjct: 231484 atgttaaaaatgccttcaat 231503
>gb|M23907.1|HUMMHDRO2 Human MHC class II lymphocyte antigen (DPw4-beta-1) gene, exon 2 Length = 3410 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 258 gactgccttcccctcagtgc 277 |||||||||||||||||||| Sbjct: 1852 gactgccttcccctcagtgc 1871
>gb|K03014.1|HUMMHSBB1 Human MHC class II HLA-SB-beta-1 gene (untyped), clone LC11 Length = 2954 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 258 gactgccttcccctcagtgc 277 |||||||||||||||||||| Sbjct: 2419 gactgccttcccctcagtgc 2438 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,646,454 Number of Sequences: 3902068 Number of extensions: 3646454 Number of successful extensions: 69063 Number of sequences better than 10.0: 63 Number of HSP's better than 10.0 without gapping: 63 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 68859 Number of HSP's gapped (non-prelim): 204 length of query: 496 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 474 effective length of database: 17,147,199,772 effective search space: 8127772691928 effective search space used: 8127772691928 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)