ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd2i15
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 216 5e-53
2gb|AC148339.1| Oryza sativa (japonica cultivar-group) chromosome... 216 5e-53
3gb|AC118675.2| Genomic sequence for Oryza sativa, Nipponbare str... 216 5e-53
4dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 216 5e-53
5dbj|AK065579.1| Oryza sativa (japonica cultivar-group) cDNA clon... 216 5e-53
6gb|DQ481667.1| Takifugu rubripes HoxCa gene cluster, complete se... 44 0.43
7dbj|AB190715.1| Burkholderia gladioli gene for DNA-directed RNA ... 44 0.43
8emb|AL109759.4|CNS018OW Human chromosome 14 DNA sequence BAC R-8... 42 1.7
9ref|XM_592709.2| PREDICTED: Bos taurus similar to Cardiotrophin-... 40 6.7
10gb|AY375803.1| Homo sapiens 4AOH 100048 LBF MHC class II antigen... 40 6.7
11gb|AY375802.1| Homo sapiens 4AOH 100063 PLH MHC class II antigen... 40 6.7
12gb|AY375801.1| Homo sapiens 10IHWS 9076 T7526 MHC class II antig... 40 6.7
13gb|AY375800.1| Homo sapiens 10IHWS 9003 KAS116 MHC class II anti... 40 6.7
14gb|AY375799.1| Homo sapiens 10IHWS 9034 SAVC MHC class II antige... 40 6.7
15gb|AY375798.1| Homo sapiens 4AOH 100065 HARA MHC class II antige... 40 6.7
16gb|AY375797.1| Homo sapiens 4AOH 100049 WHO NP199 MHC class II a... 40 6.7
17gb|AY375796.1| Homo sapiens 4AOH 100024 AMALA MHC class II antig... 40 6.7
18gb|AY375795.1| Homo sapiens 4AOH 100032 DKB MHC class II antigen... 40 6.7
19gb|AY375794.1| Homo sapiens 4AOH 100045 COX MHC class II antigen... 40 6.7
20gb|AY375793.1| Homo sapiens 4AOH 100063 TAB089 MHC class II anti... 40 6.7
21gb|AY375792.1| Homo sapiens 4AOH 100020 BM16 MHC class II antige... 40 6.7
22gb|AY375777.1| Homo sapiens 4AOH 100041 HO104 MHC class II antig... 40 6.7
23gb|AY375773.1| Homo sapiens 10IHWS 9059 SLE005 MHC class II anti... 40 6.7
24gb|AY375784.1| Homo sapiens 4AOH 100062 HOKKAIDO MHC class II an... 40 6.7
25gb|AY375778.1| Homo sapiens 4AOH 100055 YEO AM MHC class II anti... 40 6.7
26gb|AY375789.1| Homo sapiens 10IHWS 9043 BM21 MHC class II antige... 40 6.7
27gb|AY375786.1| Homo sapiens 4AOH 100066 KAWASAKI MHC class II an... 40 6.7
28gb|AY375782.1| Homo sapiens 4AOH 100060 WHO NP439 MHC class II a... 40 6.7
29gb|AC126125.6| Rattus norvegicus 14 BAC CH230-25F8 (Children's H... 40 6.7
30ref|XM_651762.1| Entamoeba histolytica HM-1:IMSS hypothetical pr... 40 6.7
31gb|AY184478.1| Plum pox virus isolate SoC polyprotein mRNA, comp... 40 6.7
32emb|BX120009.10| Human DNA sequence from clone DASS-227B13 on ch... 40 6.7
33emb|AL845446.7| Human DNA sequence from clone DAQB-79P13 on chro... 40 6.7
34emb|AL805913.4| Human DNA sequence from clone DAQB-22D21 on chro... 40 6.7
35emb|AL662824.9| Human DNA sequence from clone XXbac-22I16 on chr... 40 6.7
36emb|AL645931.7| Human DNA sequence from clone XXbac-138A21 on ch... 40 6.7
37gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, compl... 40 6.7
38emb|AL353615.37| Human DNA sequence from clone RP11-555H7 on chr... 40 6.7
39ref|XM_792445.1| PREDICTED: Strongylocentrotus purpuratus simila... 40 6.7
40emb|X02228.1|HSHLADPB Human HLA-DP-beta 1 gene and HLA-DP-alpha-... 40 6.7
41emb|BX640439.1| Bordetella bronchiseptica strain RB50, complete ... 40 6.7
42emb|BX640425.1| Bordetella parapertussis strain 12822, complete ... 40 6.7
43emb|CR759795.4| Human DNA sequence from clone DAMC-206D4 on chro... 40 6.7
44gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome 40 6.7
45emb|CR847849.5| Human DNA sequence from clone DAMA-245O6 on chro... 40 6.7
46emb|CR759904.5| Human DNA sequence from clone DAAP-277G18 on chr... 40 6.7
47emb|CR762479.5| Human DNA sequence from clone DADB-22N23 on chro... 40 6.7
48gb|AY603394.1| Homo sapiens isolate Na97 MHC class II antigen (H... 40 6.7
49gb|AY603393.1| Homo sapiens isolate GD62 MHC class II antigen (H... 40 6.7
50gb|AY603392.1| Homo sapiens isolate La69 MHC class II antigen (H... 40 6.7
51gb|AY603391.1| Homo sapiens isolate Na91 MHC class II antigen (H... 40 6.7
52gb|AY603390.1| Homo sapiens isolate Na95 MHC class II antigen (H... 40 6.7
53gb|AY603389.1| Homo sapiens isolate Li10 MHC class II antigen (H... 40 6.7
54gb|AY603388.1| Homo sapiens isolate Pu31 MHC class II antigen (H... 40 6.7
55dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.7
56emb|Y09851.2|PPPNIB Plum pox potyvirus gene for polyprotein 40 6.7
57dbj|AP005536.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.7
58emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,comp... 40 6.7
59emb|CT009497.8| Human DNA sequence from clone DAAP-90E5 on chrom... 40 6.7
60emb|CR937007.1| uncultured archaeon fos122a6+28b5 40 6.7
61emb|AL670544.7| Mouse DNA sequence from clone RP23-16G8 on chrom... 40 6.7
62gb|M23907.1|HUMMHDRO2 Human MHC class II lymphocyte antigen (DPw... 40 6.7
63gb|K03014.1|HUMMHSBB1 Human MHC class II HLA-SB-beta-1 gene (unt... 40 6.7 
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  216 bits (109), Expect = 5e-53
 Identities = 157/173 (90%)
 Strand = Plus / Plus

                                                                            
Query: 301      gcagcaggctcggtggcaataacggtgagctcctgcagcgaggactggaaattggagagc 360
                |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 12842831 gcagcaggatcggtggcaataaccgtgagctcctgcagcgaggactggaaattggagagc 12842890

                                                                            
Query: 361      aggcgcgtgaggtcccgtggccgtatggcgaggcggctggggaagcggttgcggtcgagc 420
                |||||||  |||||||| ||||| |||||||||||||||| ||||  | |||||||||||
Sbjct: 12842891 aggcgcgccaggtcccgcggccggatggcgaggcggctggagaagttgctgcggtcgagc 12842950

                                                                     
Query: 421      gccagagtctgcacatcggactcggcgctgcacgagatccggtgcgtcttctt 473
                ||||| |||||||| |||||||| |||||||||| ||||| || |||||||||
Sbjct: 12842951 gccagcgtctgcacctcggactccgcgctgcacgcgatccagtacgtcttctt 12843003



 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 54/58 (93%)
 Strand = Plus / Plus

                                                                          
Query: 47       cgccagccttctcatagaataggagaatatcaacctcacatccttcacaaaatgttaa 104
                |||||||||||| | |||||||||| |||||||| |||||||||||||||||||||||
Sbjct: 12841959 cgccagccttctgaaagaataggaggatatcaacttcacatccttcacaaaatgttaa 12842016



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 81/96 (84%)
 Strand = Plus / Plus

                                                                            
Query: 117      ttctttgaccccaaatgtgacatccacgggatcaccagcatgctcatactccaagaactc 176
                |||||| ||||| |||||||||||||| | |||||| | |||  ||||||||| ||||||
Sbjct: 12842535 ttctttcaccccgaatgtgacatccactgaatcaccggaatgtacatactccacgaactc 12842594

                                                    
Query: 177      ctctgctggattgatccacagttgtgtgtgcagcct 212
                ||||| ||| |  |||||||| || |||||||||||
Sbjct: 12842595 ctctgttgggtcaatccacagctgcgtgtgcagcct 12842630



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 36/39 (92%)
 Strand = Plus / Plus

                                                       
Query: 235      gggtcaatgtagcttaggagctcgactgccttcccctca 273
                |||||||||||||||  ||||||||| ||||||||||||
Sbjct: 12842759 gggtcaatgtagcttctgagctcgacagccttcccctca 12842797
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>gb|AC148339.1| Oryza sativa (japonica cultivar-group) chromosome 3 clone B1339A06,
             complete sequence
          Length = 132243

 Score =  216 bits (109), Expect = 5e-53
 Identities = 157/173 (90%)
 Strand = Plus / Plus

                                                                         
Query: 301   gcagcaggctcggtggcaataacggtgagctcctgcagcgaggactggaaattggagagc 360
             |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 81047 gcagcaggatcggtggcaataaccgtgagctcctgcagcgaggactggaaattggagagc 81106

                                                                         
Query: 361   aggcgcgtgaggtcccgtggccgtatggcgaggcggctggggaagcggttgcggtcgagc 420
             |||||||  |||||||| ||||| |||||||||||||||| ||||  | |||||||||||
Sbjct: 81107 aggcgcgccaggtcccgcggccggatggcgaggcggctggagaagttgctgcggtcgagc 81166

                                                                  
Query: 421   gccagagtctgcacatcggactcggcgctgcacgagatccggtgcgtcttctt 473
             ||||| |||||||| |||||||| |||||||||| ||||| || |||||||||
Sbjct: 81167 gccagcgtctgcacctcggactccgcgctgcacgcgatccagtacgtcttctt 81219



 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 54/58 (93%)
 Strand = Plus / Plus

                                                                       
Query: 47    cgccagccttctcatagaataggagaatatcaacctcacatccttcacaaaatgttaa 104
             |||||||||||| | |||||||||| |||||||| |||||||||||||||||||||||
Sbjct: 80175 cgccagccttctgaaagaataggaggatatcaacttcacatccttcacaaaatgttaa 80232



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 81/96 (84%)
 Strand = Plus / Plus

                                                                         
Query: 117   ttctttgaccccaaatgtgacatccacgggatcaccagcatgctcatactccaagaactc 176
             |||||| ||||| |||||||||||||| | |||||| | |||  ||||||||| ||||||
Sbjct: 80751 ttctttcaccccgaatgtgacatccactgaatcaccggaatgtacatactccacgaactc 80810

                                                 
Query: 177   ctctgctggattgatccacagttgtgtgtgcagcct 212
             ||||| ||| |  |||||||| || |||||||||||
Sbjct: 80811 ctctgttgggtcaatccacagctgcgtgtgcagcct 80846



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 36/39 (92%)
 Strand = Plus / Plus

                                                    
Query: 235   gggtcaatgtagcttaggagctcgactgccttcccctca 273
             |||||||||||||||  ||||||||| ||||||||||||
Sbjct: 80975 gggtcaatgtagcttctgagctcgacagccttcccctca 81013
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>gb|AC118675.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBb0094H06, from chromosome 3, complete sequence
          Length = 118075

 Score =  216 bits (109), Expect = 5e-53
 Identities = 157/173 (90%)
 Strand = Plus / Minus

                                                                         
Query: 301   gcagcaggctcggtggcaataacggtgagctcctgcagcgaggactggaaattggagagc 360
             |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 96678 gcagcaggatcggtggcaataaccgtgagctcctgcagcgaggactggaaattggagagc 96619

                                                                         
Query: 361   aggcgcgtgaggtcccgtggccgtatggcgaggcggctggggaagcggttgcggtcgagc 420
             |||||||  |||||||| ||||| |||||||||||||||| ||||  | |||||||||||
Sbjct: 96618 aggcgcgccaggtcccgcggccggatggcgaggcggctggagaagttgctgcggtcgagc 96559

                                                                  
Query: 421   gccagagtctgcacatcggactcggcgctgcacgagatccggtgcgtcttctt 473
             ||||| |||||||| |||||||| |||||||||| ||||| || |||||||||
Sbjct: 96558 gccagcgtctgcacctcggactccgcgctgcacgcgatccagtacgtcttctt 96506



 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 54/58 (93%)
 Strand = Plus / Minus

                                                                       
Query: 47    cgccagccttctcatagaataggagaatatcaacctcacatccttcacaaaatgttaa 104
             |||||||||||| | |||||||||| |||||||| |||||||||||||||||||||||
Sbjct: 97550 cgccagccttctgaaagaataggaggatatcaacttcacatccttcacaaaatgttaa 97493



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 81/96 (84%)
 Strand = Plus / Minus

                                                                         
Query: 117   ttctttgaccccaaatgtgacatccacgggatcaccagcatgctcatactccaagaactc 176
             |||||| ||||| |||||||||||||| | |||||| | |||  ||||||||| ||||||
Sbjct: 96974 ttctttcaccccgaatgtgacatccactgaatcaccggaatgtacatactccacgaactc 96915

                                                 
Query: 177   ctctgctggattgatccacagttgtgtgtgcagcct 212
             ||||| ||| |  |||||||| || |||||||||||
Sbjct: 96914 ctctgttgggtcaatccacagctgcgtgtgcagcct 96879



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 36/39 (92%)
 Strand = Plus / Minus

                                                    
Query: 235   gggtcaatgtagcttaggagctcgactgccttcccctca 273
             |||||||||||||||  ||||||||| ||||||||||||
Sbjct: 96750 gggtcaatgtagcttctgagctcgacagccttcccctca 96712
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  216 bits (109), Expect = 5e-53
 Identities = 157/173 (90%)
 Strand = Plus / Plus

                                                                            
Query: 301      gcagcaggctcggtggcaataacggtgagctcctgcagcgaggactggaaattggagagc 360
                |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 12839594 gcagcaggatcggtggcaataaccgtgagctcctgcagcgaggactggaaattggagagc 12839653

                                                                            
Query: 361      aggcgcgtgaggtcccgtggccgtatggcgaggcggctggggaagcggttgcggtcgagc 420
                |||||||  |||||||| ||||| |||||||||||||||| ||||  | |||||||||||
Sbjct: 12839654 aggcgcgccaggtcccgcggccggatggcgaggcggctggagaagttgctgcggtcgagc 12839713

                                                                     
Query: 421      gccagagtctgcacatcggactcggcgctgcacgagatccggtgcgtcttctt 473
                ||||| |||||||| |||||||| |||||||||| ||||| || |||||||||
Sbjct: 12839714 gccagcgtctgcacctcggactccgcgctgcacgcgatccagtacgtcttctt 12839766



 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 54/58 (93%)
 Strand = Plus / Plus

                                                                          
Query: 47       cgccagccttctcatagaataggagaatatcaacctcacatccttcacaaaatgttaa 104
                |||||||||||| | |||||||||| |||||||| |||||||||||||||||||||||
Sbjct: 12838722 cgccagccttctgaaagaataggaggatatcaacttcacatccttcacaaaatgttaa 12838779



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 81/96 (84%)
 Strand = Plus / Plus

                                                                            
Query: 117      ttctttgaccccaaatgtgacatccacgggatcaccagcatgctcatactccaagaactc 176
                |||||| ||||| |||||||||||||| | |||||| | |||  ||||||||| ||||||
Sbjct: 12839298 ttctttcaccccgaatgtgacatccactgaatcaccggaatgtacatactccacgaactc 12839357

                                                    
Query: 177      ctctgctggattgatccacagttgtgtgtgcagcct 212
                ||||| ||| |  |||||||| || |||||||||||
Sbjct: 12839358 ctctgttgggtcaatccacagctgcgtgtgcagcct 12839393



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 36/39 (92%)
 Strand = Plus / Plus

                                                       
Query: 235      gggtcaatgtagcttaggagctcgactgccttcccctca 273
                |||||||||||||||  ||||||||| ||||||||||||
Sbjct: 12839522 gggtcaatgtagcttctgagctcgacagccttcccctca 12839560
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>dbj|AK065579.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013031C20, full
           insert sequence
          Length = 1561

 Score =  216 bits (109), Expect = 5e-53
 Identities = 172/193 (89%)
 Strand = Plus / Minus

                                                                       
Query: 301 gcagcaggctcggtggcaataacggtgagctcctgcagcgaggactggaaattggagagc 360
           ||||||||  ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 544 gcagcaggaccggtggcaataaccgtgagctcctgcagcgaggactggaaattggagagc 485

                                                                       
Query: 361 aggcgcgtgaggtcccgtggccgtatggcgaggcggctggggaagcggttgcggtcgagc 420
           |||||||  |||||||| ||||| |||||||||||||||| ||||  | |||||||||||
Sbjct: 484 aggcgcgccaggtcccgcggccggatggcgaggcggctggagaagttgctgcggtcgagc 425

                                                                       
Query: 421 gccagagtctgcacatcggactcggcgctgcacgagatccggtgcgtcttcttacgcccg 480
           ||||| |||||||| |||||||| |||||||||| ||||| || |||||||||   ||||
Sbjct: 424 gccagcgtctgcacctcggactccgcgctgcacgcgatccagtacgtcttcttcaccccg 365

                        
Query: 481 ctgaggcagtgga 493
            ||||||||||||
Sbjct: 364 ttgaggcagtgga 352



 Score =  194 bits (98), Expect = 2e-46
 Identities = 206/242 (85%)
 Strand = Plus / Minus

                                                                       
Query: 32  ccaacaggacaggtgcgccagccttctcatagaataggagaatatcaacctcacatcctt 91
           |||| ||||||||  |||||||||||| | |||||||||| |||||||| ||||||||||
Sbjct: 819 ccaaaaggacaggctcgccagccttctgaaagaataggaggatatcaacttcacatcctt 760

                                                                       
Query: 92  cacaaaatgttaaaaatgccttcaattctttgaccccaaatgtgacatccacgggatcac 151
           ||||||||||||| || ||||| | |||||| ||||| |||||||||||||| | |||||
Sbjct: 759 cacaaaatgttaagaaagccttgagttctttcaccccgaatgtgacatccactgaatcac 700

                                                                       
Query: 152 cagcatgctcatactccaagaactcctctgctggattgatccacagttgtgtgtgcagcc 211
           | | |||  |||||||||  |||||||||| ||| |  |||||||| || ||||||||||
Sbjct: 699 cggaatgtacatactccactaactcctctgttgggtcaatccacagctgcgtgtgcagcc 640

                                                                       
Query: 212 tactgtcgtagtcatctttggtggggtcaatgtagcttaggagctcgactgccttcccct 271
           |  | ||| |||||||||| || |||||||||||||||  ||||||||| ||||||||||
Sbjct: 639 tcgtatcgcagtcatctttcgtcgggtcaatgtagcttctgagctcgacagccttcccct 580

             
Query: 272 ca 273
           ||
Sbjct: 579 ca 578
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>gb|DQ481667.1| Takifugu rubripes HoxCa gene cluster, complete sequence
          Length = 378763

 Score = 44.1 bits (22), Expect = 0.43
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 266    tcccctcagtgccatcatcgac 287
              ||||||||||||||||||||||
Sbjct: 322468 tcccctcagtgccatcatcgac 322447
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>dbj|AB190715.1| Burkholderia gladioli gene for DNA-directed RNA polymerase subunit
           D, partial cds, strain: MAFF 301064
          Length = 829

 Score = 44.1 bits (22), Expect = 0.43
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 413 ggtcgagcgccagagtctgcacatcg 438
           |||||||||||||| |||||||||||
Sbjct: 542 ggtcgagcgccagattctgcacatcg 567
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>emb|AL109759.4|CNS018OW Human chromosome 14 DNA sequence BAC R-898B23 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 201794

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 78    aacctcacatccttcacaaaa 98
             |||||||||||||||||||||
Sbjct: 32707 aacctcacatccttcacaaaa 32687
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>ref|XM_592709.2| PREDICTED: Bos taurus similar to Cardiotrophin-1 (CT-1)
           (LOC514803), mRNA
          Length = 804

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 474 acgcccgctgaggcagtgga 493
           ||||||||||||||||||||
Sbjct: 698 acgcccgctgaggcagtgga 679
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>gb|AY375803.1| Homo sapiens 4AOH 100048 LBF MHC class II antigen (HLA-DPB1) gene,
           HLA-DPB1*1701 allele, exon 2 and partial cds
          Length = 438

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 258 gactgccttcccctcagtgc 277
           ||||||||||||||||||||
Sbjct: 129 gactgccttcccctcagtgc 148
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>gb|AY375802.1| Homo sapiens 4AOH 100063 PLH MHC class II antigen (HLA-DPB1) gene,
           HLA-DPB1*1501 allele, exon 2 and partial cds
          Length = 460

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 258 gactgccttcccctcagtgc 277
           ||||||||||||||||||||
Sbjct: 145 gactgccttcccctcagtgc 164
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>gb|AY375801.1| Homo sapiens 10IHWS 9076 T7526 MHC class II antigen (HLA-DPB1)
           gene, HLA-DPB1*1301 allele, exon 2 and partial cds
          Length = 454

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 258 gactgccttcccctcagtgc 277
           ||||||||||||||||||||
Sbjct: 145 gactgccttcccctcagtgc 164
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>gb|AY375800.1| Homo sapiens 10IHWS 9003 KAS116 MHC class II antigen (HLA-DPB1)
           gene, HLA-DPB1*1301 allele, exon 2 and partial cds
          Length = 460

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 258 gactgccttcccctcagtgc 277
           ||||||||||||||||||||
Sbjct: 145 gactgccttcccctcagtgc 164
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>gb|AY375799.1| Homo sapiens 10IHWS 9034 SAVC MHC class II antigen (HLA-DPB1) gene,
           HLA-DPB1*1001 allele, exon 2 and partial cds
          Length = 454

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 258 gactgccttcccctcagtgc 277
           ||||||||||||||||||||
Sbjct: 145 gactgccttcccctcagtgc 164
to top
>gb|AY375798.1| Homo sapiens 4AOH 100065 HARA MHC class II antigen (HLA-DPB1) gene,
           HLA-DPB1*0901 allele, exon 2 and partial cds
          Length = 453

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 258 gactgccttcccctcagtgc 277
           ||||||||||||||||||||
Sbjct: 145 gactgccttcccctcagtgc 164
to top
>gb|AY375797.1| Homo sapiens 4AOH 100049 WHO NP199 MHC class II antigen (HLA-DPB1)
           gene, HLA-DPB1*0501 allele, exon 2 and partial cds
          Length = 460

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 258 gactgccttcccctcagtgc 277
           ||||||||||||||||||||
Sbjct: 145 gactgccttcccctcagtgc 164
to top
>gb|AY375796.1| Homo sapiens 4AOH 100024 AMALA MHC class II antigen (HLA-DPB1)
           gene, HLA-DPB1*0402 allele, exon 2 and partial cds
          Length = 456

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 258 gactgccttcccctcagtgc 277
           ||||||||||||||||||||
Sbjct: 141 gactgccttcccctcagtgc 160
to top
>gb|AY375795.1| Homo sapiens 4AOH 100032 DKB MHC class II antigen (HLA-DPB1) gene,
           HLA-DPB1*0401 allele, exon 2 and partial cds
          Length = 452

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 258 gactgccttcccctcagtgc 277
           ||||||||||||||||||||
Sbjct: 145 gactgccttcccctcagtgc 164
to top
>gb|AY375794.1| Homo sapiens 4AOH 100045 COX MHC class II antigen (HLA-DPB1) gene,
           HLA-DPB1*0301 allele, exon 2 and partial cds
          Length = 454

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 258 gactgccttcccctcagtgc 277
           ||||||||||||||||||||
Sbjct: 145 gactgccttcccctcagtgc 164
to top
>gb|AY375793.1| Homo sapiens 4AOH 100063 TAB089 MHC class II antigen (HLA-DPB1)
           gene, HLA-DPB1*0202 allele, exon 2 and partial cds
          Length = 454

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 258 gactgccttcccctcagtgc 277
           ||||||||||||||||||||
Sbjct: 145 gactgccttcccctcagtgc 164
to top
>gb|AY375792.1| Homo sapiens 4AOH 100020 BM16 MHC class II antigen (HLA-DPB1) gene,
           HLA-DPB1*02012 allele, exon 2 and partial cds
          Length = 454

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 258 gactgccttcccctcagtgc 277
           ||||||||||||||||||||
Sbjct: 145 gactgccttcccctcagtgc 164
to top
>gb|AY375777.1| Homo sapiens 4AOH 100041 HO104 MHC class II antigen (HLA-DPB1)
           gene, HLA-DPB1*0401 allele, exon 2 and partial cds
          Length = 452

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 258 gactgccttcccctcagtgc 277
           ||||||||||||||||||||
Sbjct: 145 gactgccttcccctcagtgc 164
to top
>gb|AY375773.1| Homo sapiens 10IHWS 9059 SLE005 MHC class II antigen (HLA-DPB1)
           gene, HLA-DPB1*0301 allele, exon 2 and partial cds
          Length = 454

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 258 gactgccttcccctcagtgc 277
           ||||||||||||||||||||
Sbjct: 145 gactgccttcccctcagtgc 164
to top
>gb|AY375784.1| Homo sapiens 4AOH 100062 HOKKAIDO MHC class II antigen (HLA-DPB1)
           gene, HLA-DPB1*0501 allele, exon 2 and partial cds
          Length = 460

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 258 gactgccttcccctcagtgc 277
           ||||||||||||||||||||
Sbjct: 145 gactgccttcccctcagtgc 164
to top
>gb|AY375778.1| Homo sapiens 4AOH 100055 YEO AM MHC class II antigen (HLA-DPB1)
           gene, HLA-DPB1*0401 allele, exon 2 and partial cds
          Length = 452

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 258 gactgccttcccctcagtgc 277
           ||||||||||||||||||||
Sbjct: 145 gactgccttcccctcagtgc 164
to top
>gb|AY375789.1| Homo sapiens 10IHWS 9043 BM21 MHC class II antigen (HLA-DPB1) gene,
           HLA-DPB1*1001 allele, exon 2 and partial cds
          Length = 454

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 258 gactgccttcccctcagtgc 277
           ||||||||||||||||||||
Sbjct: 145 gactgccttcccctcagtgc 164
to top
>gb|AY375786.1| Homo sapiens 4AOH 100066 KAWASAKI MHC class II antigen (HLA-DPB1)
           gene, HLA-DPB1*0901 allele, exon 2 and partial cds
          Length = 453

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 258 gactgccttcccctcagtgc 277
           ||||||||||||||||||||
Sbjct: 145 gactgccttcccctcagtgc 164
to top
>gb|AY375782.1| Homo sapiens 4AOH 100060 WHO NP439 MHC class II antigen (HLA-DPB1)
           gene, HLA-DPB1*0501 allele, exon 2 and partial cds
          Length = 460

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 258 gactgccttcccctcagtgc 277
           ||||||||||||||||||||
Sbjct: 145 gactgccttcccctcagtgc 164
to top
>gb|AC126125.6| Rattus norvegicus 14 BAC CH230-25F8 (Children's Hospital Oakland Research
              Institute) complete sequence
          Length = 223844

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 23     aggctggagccaacaggaca 42
              ||||||||||||||||||||
Sbjct: 158746 aggctggagccaacaggaca 158765
to top
>ref|XM_651762.1| Entamoeba histolytica HM-1:IMSS hypothetical protein (7.t00015)
           partial mRNA
          Length = 1071

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 64  aataggagaatatcaacctc 83
           ||||||||||||||||||||
Sbjct: 495 aataggagaatatcaacctc 514
to top
>gb|AY184478.1| Plum pox virus isolate SoC polyprotein mRNA, complete cds
          Length = 9795

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 161  catactccaagaactcctctgctg 184
            |||| |||||||||||||||||||
Sbjct: 3420 catattccaagaactcctctgctg 3397
to top
>emb|BX120009.10| Human DNA sequence from clone DASS-227B13 on chromosome 6, complete
             sequence
          Length = 64380

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 258   gactgccttcccctcagtgc 277
             ||||||||||||||||||||
Sbjct: 12644 gactgccttcccctcagtgc 12663
to top
>emb|AL845446.7| Human DNA sequence from clone DAQB-79P13 on chromosome 6 Contains
           the 3' end of the HLA-DPB1 gene for the major
           histocompatibility complex, class II, DP beta 1, the
           HLA-DPA2 pseudogene for major histocompatibility
           complex, class II, DP alpha 2, the COL11A2P pseudogene
           for collagen, type X1, alpha 2, the HLA-DPB2 pseudogene
           for the major histocompatibility complex, class II, DP
           beta 2, the DAQB-79P13.6 gene for a novel transcript
           that shares 2 exons with HLA-DPB2, the HLA-DPA3
           pseudogene for the major histocompatibility complex,
           class II, DP alpha 2, HCG24 gene for HLA complex group
           24, the 3' end of the COL11A2 gene for collagen type XI
           alpha 2 and 1 CpG island, complete sequence
          Length = 93842

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 258 gactgccttcccctcagtgc 277
           ||||||||||||||||||||
Sbjct: 926 gactgccttcccctcagtgc 945
to top
>emb|AL805913.4| Human DNA sequence from clone DAQB-22D21 on chromosome 6 Contains the 3'
              end of the BRD2 gene for bromodomain containing 2, the
              HLA-DOA gene for the major histocompatibility complex,
              class II, DO alpha, the HLA-DPA1 gene for the major
              histocompatibility complex, class II, DP alpha 1, the
              RPL32P1 pseudogene for ribosomal protein L32 pseudogene 1,
              the 3' end of the HLA-DPB1 gene for the major
              histocompatibility complex, class II, DP beta 1 and 1 CpG
              isalnd, complete sequence
          Length = 106728

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 258    gactgccttcccctcagtgc 277
              ||||||||||||||||||||
Sbjct: 105654 gactgccttcccctcagtgc 105673
to top
>emb|AL662824.9| Human DNA sequence from clone XXbac-22I16 on chromosome 6 contains the
             HLA-DPA1 gene for major histocompatibility complex, class
             II, DP alpha 1, the HLA-DPB1 gene for major
             histocompatibility complex, class II, DP beta 1, a
             ribosomal protein L32 (RPL32) pseudogene, the HLA-DPA2
             pseudogene for major histocompatibility complex, class II,
             DP alpha 2, a pseudogene similar to part of collagens, a
             novel protein similar to major histocompatibility complex,
             class II, DP beta 2 (pseudogene), a major
             histocompatibility complex, class II, DP beta 1
             pseudogene, two putative novel transcripts, the COL11A2
             gene for collagen, type XI, alpha 2, the RXRB gene for
             retinoid X receptor, beta, the HKE4 gene for HLA-class II
             region expressed gene KE4, the 5' end of the HSD17B8 gene
             for hydroxysteroid (17-beta) dehydrogenase 8 and four CpG
             islands, complete sequence
          Length = 187964

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 258   gactgccttcccctcagtgc 277
             ||||||||||||||||||||
Sbjct: 62357 gactgccttcccctcagtgc 62376
to top
>emb|AL645931.7| Human DNA sequence from clone XXbac-138A21 on chromosome 6 Contains the
             HLA-DOA, HLA-DPA1 and HLA-DPB1 genes for major
             histocompatibility complex class II proteins DO alpha, DP
             alpha 1 and DP beta 1, the HLA-DPA2 major
             histocompatibility complex class II DP alpha 2 pseudogene,
             ribosomal protein L32 pseudogene RPL32P1, a pseudogene
             similar to part of collagens, the 5' end of an HLA class
             II histocompatibility antigen D or S beta pseudogene, the
             5' end of a novel protein similar to major
             histocompatibility complex class II DP beta 1 precursor
             and a CpG island, complete sequence
          Length = 124899

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 258   gactgccttcccctcagtgc 277
             ||||||||||||||||||||
Sbjct: 88329 gactgccttcccctcagtgc 88348
to top
>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence
          Length = 4895836

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 411    gcggtcgagcgccagagtctgcac 434
              |||||||||||| |||||||||||
Sbjct: 767524 gcggtcgagcgctagagtctgcac 767547
to top
>emb|AL353615.37| Human DNA sequence from clone RP11-555H7 on chromosome 9 Contains a
             gene for a novel protein (MGC35463), complete sequence
          Length = 107891

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 79    acctcacatccttcacaaaa 98
             ||||||||||||||||||||
Sbjct: 67316 acctcacatccttcacaaaa 67335
to top
>ref|XM_792445.1| PREDICTED: Strongylocentrotus purpuratus similar to IBD2834
           (LOC592947), partial mRNA
          Length = 969

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 214 ctgtcgtagtcatctttggt 233
           ||||||||||||||||||||
Sbjct: 365 ctgtcgtagtcatctttggt 384
to top
>emb|X02228.1|HSHLADPB Human HLA-DP-beta 1 gene and HLA-DP-alpha-1 gene exon 1
          Length = 14782

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 258  gactgccttcccctcagtgc 277
            ||||||||||||||||||||
Sbjct: 7365 gactgccttcccctcagtgc 7384
to top
>emb|BX640439.1| Bordetella bronchiseptica strain RB50, complete genome; segment 3/16
          Length = 346362

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 276    gccatcatcgacgccaggca 295
              ||||||||||||||||||||
Sbjct: 297910 gccatcatcgacgccaggca 297891
to top
>emb|BX640425.1| Bordetella parapertussis strain 12822, complete genome; segment 3/14
          Length = 348257

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 276    gccatcatcgacgccaggca 295
              ||||||||||||||||||||
Sbjct: 195126 gccatcatcgacgccaggca 195107
to top
>emb|CR759795.4| Human DNA sequence from clone DAMC-206D4 on chromosome 6, complete
             sequence
          Length = 119898

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 258   gactgccttcccctcagtgc 277
             ||||||||||||||||||||
Sbjct: 82757 gactgccttcccctcagtgc 82776
to top
>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome
          Length = 7074893

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 396     gctggggaagcggttgcggtcgag 419
               ||||| ||||||||||||||||||
Sbjct: 6559725 gctggtgaagcggttgcggtcgag 6559748
to top
>emb|CR847849.5| Human DNA sequence from clone DAMA-245O6 on chromosome 6, complete
             sequence
          Length = 88163

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 258   gactgccttcccctcagtgc 277
             ||||||||||||||||||||
Sbjct: 24775 gactgccttcccctcagtgc 24794
to top
>emb|CR759904.5| Human DNA sequence from clone DAAP-277G18 on chromosome 6, complete
             sequence
          Length = 86480

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 258   gactgccttcccctcagtgc 277
             ||||||||||||||||||||
Sbjct: 60801 gactgccttcccctcagtgc 60820
to top
>emb|CR762479.5| Human DNA sequence from clone DADB-22N23 on chromosome 6, complete
             sequence
          Length = 35870

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 258   gactgccttcccctcagtgc 277
             ||||||||||||||||||||
Sbjct: 11253 gactgccttcccctcagtgc 11272
to top
>gb|AY603394.1| Homo sapiens isolate Na97 MHC class II antigen (HLA-DPB1) gene,
           intron 1
          Length = 466

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 258 gactgccttcccctcagtgc 277
           ||||||||||||||||||||
Sbjct: 188 gactgccttcccctcagtgc 207
to top
>gb|AY603393.1| Homo sapiens isolate GD62 MHC class II antigen (HLA-DPB1) gene,
           intron 1
          Length = 466

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 258 gactgccttcccctcagtgc 277
           ||||||||||||||||||||
Sbjct: 188 gactgccttcccctcagtgc 207
to top
>gb|AY603392.1| Homo sapiens isolate La69 MHC class II antigen (HLA-DPB1) gene,
           intron 1
          Length = 466

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 258 gactgccttcccctcagtgc 277
           ||||||||||||||||||||
Sbjct: 188 gactgccttcccctcagtgc 207
to top
>gb|AY603391.1| Homo sapiens isolate Na91 MHC class II antigen (HLA-DPB1) gene,
           intron 1
          Length = 466

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 258 gactgccttcccctcagtgc 277
           ||||||||||||||||||||
Sbjct: 188 gactgccttcccctcagtgc 207
to top
>gb|AY603390.1| Homo sapiens isolate Na95 MHC class II antigen (HLA-DPB1) gene,
           intron 1
          Length = 466

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 258 gactgccttcccctcagtgc 277
           ||||||||||||||||||||
Sbjct: 188 gactgccttcccctcagtgc 207
to top
>gb|AY603389.1| Homo sapiens isolate Li10 MHC class II antigen (HLA-DPB1) gene,
           intron 1
          Length = 466

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 258 gactgccttcccctcagtgc 277
           ||||||||||||||||||||
Sbjct: 188 gactgccttcccctcagtgc 207
to top
>gb|AY603388.1| Homo sapiens isolate Pu31 MHC class II antigen (HLA-DPB1) gene,
           intron 1
          Length = 466

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 258 gactgccttcccctcagtgc 277
           ||||||||||||||||||||
Sbjct: 188 gactgccttcccctcagtgc 207
to top
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 290      caggcaacactgcagcaggc 309
                ||||||||||||||||||||
Sbjct: 10204159 caggcaacactgcagcaggc 10204140
to top
>emb|Y09851.2|PPPNIB Plum pox potyvirus gene for polyprotein
          Length = 9795

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 161  catactccaagaactcctctgctg 184
            |||| |||||||||||||||||||
Sbjct: 3420 catattccaagaactcctctgctg 3397
to top
>dbj|AP005536.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBa0055M07
          Length = 150901

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 290   caggcaacactgcagcaggc 309
             ||||||||||||||||||||
Sbjct: 76525 caggcaacactgcagcaggc 76506
to top
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence
          Length = 5888780

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 396     gctggggaagcggttgcggtcgag 419
               ||||| ||||||||||||||||||
Sbjct: 5513413 gctggtgaagcggttgcggtcgag 5513436
to top
>emb|CT009497.8| Human DNA sequence from clone DAAP-90E5 on chromosome 6, complete
            sequence
          Length = 63203

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 258  gactgccttcccctcagtgc 277
            ||||||||||||||||||||
Sbjct: 8151 gactgccttcccctcagtgc 8170
to top
>emb|CR937007.1| uncultured archaeon fos122a6+28b5
          Length = 62584

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 136   acatccacgggatcaccagc 155
             ||||||||||||||||||||
Sbjct: 33564 acatccacgggatcaccagc 33545
to top
>emb|AL670544.7| Mouse DNA sequence from clone RP23-16G8 on chromosome X, complete
              sequence
          Length = 236946

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 98     atgttaaaaatgccttcaat 117
              ||||||||||||||||||||
Sbjct: 231484 atgttaaaaatgccttcaat 231503
to top
>gb|M23907.1|HUMMHDRO2 Human MHC class II lymphocyte antigen (DPw4-beta-1) gene, exon 2
          Length = 3410

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 258  gactgccttcccctcagtgc 277
            ||||||||||||||||||||
Sbjct: 1852 gactgccttcccctcagtgc 1871
to top
>gb|K03014.1|HUMMHSBB1 Human MHC class II HLA-SB-beta-1 gene (untyped), clone LC11
          Length = 2954

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 258  gactgccttcccctcagtgc 277
            ||||||||||||||||||||
Sbjct: 2419 gactgccttcccctcagtgc 2438


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,646,454
Number of Sequences: 3902068
Number of extensions: 3646454
Number of successful extensions: 69063
Number of sequences better than 10.0: 63
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 68859
Number of HSP's gapped (non-prelim): 204
length of query: 496
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 474
effective length of database: 17,147,199,772
effective search space: 8127772691928
effective search space used: 8127772691928
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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