Clone Information

BLAST Search Result

Clone Name	basd2i14
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	CK5P1_ARATH (Q8H0V1) CDK5RAP1-like protein	179	2e-45
2	CK5P1_RAT (Q9JLH6) CDK5 regulatory subunit-associated protein 1 ...	122	2e-28
3	CK5P1_MOUSE (Q8BTW8) CDK5 regulatory subunit-associated protein ...	122	2e-28
4	CK5P1_HUMAN (Q96SZ6) CDK5 regulatory subunit-associated protein ...	113	1e-25
5	CK5P1_DROME (Q9VGZ1) CDK5RAP1-like protein	111	5e-25
6	CK5P1_CAEEL (Q09316) CDK5RAP1-like protein	103	1e-22
7	Y392_BUCBP (Q89AC2) Hypothetical UPF0004 protein bbp_392	65	5e-11
8	Y754_TREPA (O83735) Hypothetical UPF0004 protein TP0754	62	4e-10
9	Y1001_PASMU (Q9L699) Hypothetical UPF0004 protein PM1001	60	1e-09
10	Y3980_PSEAE (Q51470) Hypothetical UPF0004 protein PA3980	59	3e-09
11	Y019_HAEIN (Q57163) Hypothetical UPF0004 protein HI0019	59	3e-09
12	YLEA_ECOLI (P0AEI1) Hypothetical UPF0004 protein yleA	57	1e-08
13	YLEA_ECOL6 (P0AEI2) Hypothetical UPF0004 protein yleA	57	1e-08
14	YLEA_ECO57 (P0AEI3) Hypothetical UPF0004 protein yleA	57	1e-08
15	Y441_BUCAI (P57516) Hypothetical UPF0004 protein BU441	56	2e-08
16	Y426_BUCAP (Q8K9C2) Hypothetical UPF0004 protein BUsg426	56	2e-08
17	Y808_RICPR (Q9ZCE8) Hypothetical UPF0004 protein RP808	52	3e-07
18	Y269_HELPY (P56131) Hypothetical UPF0004 protein HP0269	51	6e-07
19	Y269_HELPJ (Q9ZMG6) Hypothetical UPF0004 protein jhp_0254	51	6e-07
20	YMCB_BACSU (O31778) Hypothetical UPF0004 protein ymcB	51	6e-07
21	Y2752_MYCBO (P67086) Hypothetical UPF0004 protein Mb2752c	50	1e-06
22	Y2733_MYCTU (P67085) Hypothetical UPF0004 protein Rv2733c/MT2803	50	1e-06
23	Y996_SYNY3 (P73127) Hypothetical UPF0004 protein sll0996	50	1e-06
24	Y989_MYCLE (Q49842) Hypothetical UPF0004 protein ML0989	50	1e-06
25	Y284_AQUAE (O66638) Hypothetical UPF0004 protein aq_284	48	7e-06
26	Y16R_MYCIO (Q49573) Hypothetical UPF0004 protein in 16S RNA 5're...	43	2e-04
27	Y477_CHLPN (Q9Z874) Hypothetical UPF0004 protein CPn_0477/CP0277...	43	2e-04
28	Y416_RICPR (Q9ZDB6) Hypothetical UPF0004 protein RP416	43	2e-04
29	Y1571_PASMU (Q9CKN9) Hypothetical UPF0004 protein PM1571	42	3e-04
30	YLIG_ECOLI (P0AEI4) Hypothetical UPF0004 protein yliG	42	5e-04
31	YLIG_ECO57 (P0AEI5) Hypothetical UPF0004 protein yliG	42	5e-04
32	Y285_HELPY (P56130) Hypothetical UPF0004 protein HP0285	42	5e-04
33	Y285_HELPJ (Q9ZMF0) Hypothetical UPF0004 protein jhp_0270	42	5e-04
34	Y474_AQUAE (O66772) Hypothetical UPF0004 protein aq_474	41	8e-04
35	YQEV_BACSU (P54462) Hypothetical UPF0004 protein yqeV	40	0.001
36	Y082_SYNY3 (Q55803) Hypothetical UPF0004 protein slr0082	37	0.011
37	Y849_AQUAE (O67016) Hypothetical UPF0004 protein aq_849	36	0.020
38	Y269_TREPA (O83293) Hypothetical UPF0004 protein TP0269	35	0.033
39	Y1247_ARCFU (O29021) Hypothetical UPF0004 protein AF1247	35	0.044
40	Y826_METTH (O26914) Hypothetical UPF0004 protein MTH826	34	0.097
41	YML9_YEAST (Q03208) Hypothetical 40.1 kDa protein in NDI1-ATR1 i...	30	1.8
42	HAT2_USTMA (Q4P553) Histone acetyltransferase type B subunit 2 (...	28	4.1
43	TRDH_CAMPS (Q8QQ34) Transcript release DNA helicase (EC 3.6.1.-)	28	5.3
44	Y1729_PYRAB (Q9UXX9) Hypothetical UPF0004 protein PYRAB17290	28	7.0
45	Y1711_VIBCH (Q9KRD1) UPF0313 protein VC1711	28	7.0
46	TRDH_CAMPM (Q8V2N7) Transcript release DNA helicase (EC 3.6.1.-)	28	7.0
47	YD6C_SCHPO (Q10324) Hypothetical protein C17G8.12 in chromosome I	28	7.0
48	FAU_DROME (Q9VGX3) Protein anoxia up-regulated	28	7.0
49	NARQ_ECOLI (P27896) Nitrate/nitrite sensor protein narQ (EC 2.7....	27	9.1
50	ZFNL2_ARATH (Q9SQU4) Zinc finger CCCH type domain-containing pro...	27	9.1
51	TRDH_VARV (P33827) Transcript release DNA helicase (EC 3.6.1.-) ...	27	9.1
52	Y830_THEMA (Q9WZT7) Hypothetical UPF0004 protein TM0830	27	9.1
53	GHRHR_PIG (P34999) Growth hormone-releasing hormone receptor pre...	27	9.1
54	TRA1_YEAST (P38811) Transcription-associated protein 1 (p400 kDa...	27	9.1

>CK5P1_ARATH (Q8H0V1) CDK5RAP1-like protein|
          Length = 640

 Score =  179 bits (453), Expect = 2e-45
 Identities = 89/128 (69%), Positives = 99/128 (77%)
 Frame = +3

Query: 3   TYADITPVRISDNSVTAFVSVMRGCNNMCSFCIVPFTXXXXXXXXXXXXXXXXXXLWYAG 182
           TYADI+PVRIS+NS+TAFVSVMRGCNNMC+FCIVPFT                  LW +G
Sbjct: 272 TYADISPVRISENSITAFVSVMRGCNNMCAFCIVPFTRGRERSRPVESIIREVGELWESG 331

Query: 183 VKEVMLLGQNVNSYNDTSEVEELEPGKNWQLSEGFSSRCKVKNTGLRFADLLDQLSLEYP 362
           VKEV LLGQNVNSYND S   + E G NW+ SEGFSSRCKVKN GLRFADLLD+LS+E+P
Sbjct: 332 VKEVTLLGQNVNSYNDDSA--DRESGANWEYSEGFSSRCKVKNMGLRFADLLDRLSVEFP 389

Query: 363 EMRFRFTS 386
           EMRFRFTS
Sbjct: 390 EMRFRFTS 397

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>CK5P1_RAT (Q9JLH6) CDK5 regulatory subunit-associated protein 1 (CDK5|
           activator-binding protein C42)
          Length = 586

 Score =  122 bits (307), Expect = 2e-28
 Identities = 67/128 (52%), Positives = 82/128 (64%)
 Frame = +3

Query: 3   TYADITPVRISDNSVTAFVSVMRGCNNMCSFCIVPFTXXXXXXXXXXXXXXXXXXLWYAG 182
           TYADI PV+ S ++ +AFVS+MRGC+NMCS+CIVPFT                  L   G
Sbjct: 231 TYADIMPVQTSPSATSAFVSIMRGCDNMCSYCIVPFTRGRERSRPVASILDEVRKLSEQG 290

Query: 183 VKEVMLLGQNVNSYNDTSEVEELEPGKNWQLSEGFSSRCKVKNTGLRFADLLDQLSLEYP 362
           +KEV LLGQNVNS+ D SEV+    G +  LS GF++  K K  GLRF+ LLDQ+S   P
Sbjct: 291 LKEVTLLGQNVNSFRDNSEVQFSSTG-SANLSRGFTTNYKPKQGGLRFSHLLDQVSRIDP 349

Query: 363 EMRFRFTS 386
           EMR RFTS
Sbjct: 350 EMRIRFTS 357

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>CK5P1_MOUSE (Q8BTW8) CDK5 regulatory subunit-associated protein 1 (CDK5|
           activator-binding protein C42)
          Length = 588

 Score =  122 bits (306), Expect = 2e-28
 Identities = 67/128 (52%), Positives = 82/128 (64%)
 Frame = +3

Query: 3   TYADITPVRISDNSVTAFVSVMRGCNNMCSFCIVPFTXXXXXXXXXXXXXXXXXXLWYAG 182
           TYADI PV+ S ++ +AFVS+MRGC+NMCS+CIVPFT                  L   G
Sbjct: 233 TYADIMPVQTSPSATSAFVSIMRGCDNMCSYCIVPFTRGRERSRPVASILDEVRKLSEQG 292

Query: 183 VKEVMLLGQNVNSYNDTSEVEELEPGKNWQLSEGFSSRCKVKNTGLRFADLLDQLSLEYP 362
           +KEV LLGQNVNS+ D SEV+    G +  LS GF++  K K  GLRF+ LLDQ+S   P
Sbjct: 293 LKEVTLLGQNVNSFRDNSEVQFNNAG-SANLSRGFTTNYKPKQGGLRFSHLLDQVSRIDP 351

Query: 363 EMRFRFTS 386
           EMR RFTS
Sbjct: 352 EMRIRFTS 359

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>CK5P1_HUMAN (Q96SZ6) CDK5 regulatory subunit-associated protein 1 (CDK5|
           activator-binding protein C42)
          Length = 601

 Score =  113 bits (283), Expect = 1e-25
 Identities = 66/142 (46%), Positives = 80/142 (56%), Gaps = 14/142 (9%)
 Frame = +3

Query: 3   TYADITPVRISDNSVTAFVSVMRGCNNMCSFCIVPFTXXXXXXXXXXXXXXXXXXL---- 170
           TYAD+ PV+ S ++ +AFVS+MRGC+NMCS+CIVPFT                  L    
Sbjct: 234 TYADVMPVQTSASATSAFVSIMRGCDNMCSYCIVPFTRGRERSRPIASILEEVKKLSEQV 293

Query: 171 ----------WYAGVKEVMLLGQNVNSYNDTSEVEELEPGKNWQLSEGFSSRCKVKNTGL 320
                        G+KEV LLGQNVNS+ D SEV+         LS GF++  K K  GL
Sbjct: 294 FLPPRPPKVLGLQGLKEVTLLGQNVNSFRDNSEVQ-FNSAVPTNLSRGFTTNYKTKQGGL 352

Query: 321 RFADLLDQLSLEYPEMRFRFTS 386
           RFA LLDQ+S   PEMR RFTS
Sbjct: 353 RFAHLLDQVSRVDPEMRIRFTS 374

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>CK5P1_DROME (Q9VGZ1) CDK5RAP1-like protein|
          Length = 583

 Score =  111 bits (277), Expect = 5e-25
 Identities = 62/128 (48%), Positives = 76/128 (59%)
 Frame = +3

Query: 3   TYADITPVRISDNSVTAFVSVMRGCNNMCSFCIVPFTXXXXXXXXXXXXXXXXXXLWYAG 182
           TYAD+ PVR++  S TAFVS+MRGC+NMC++CIVPFT                  L   G
Sbjct: 227 TYADVMPVRLNSESPTAFVSIMRGCDNMCTYCIVPFTRGRERSRPLASIVAEVKALAEQG 286

Query: 183 VKEVMLLGQNVNSYNDTSEVEELEPGKNWQLSEGFSSRCKVKNTGLRFADLLDQLSLEYP 362
           VKEV LLGQNVNSY D +  EE +  K   +  GFS+  K K  G  FA LL  ++   P
Sbjct: 287 VKEVTLLGQNVNSYRDRTAQEEQDSLKATPV-PGFSTVYKPKTGGTPFAALLRSVAQAVP 345

Query: 363 EMRFRFTS 386
           +MR RFTS
Sbjct: 346 DMRIRFTS 353

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>CK5P1_CAEEL (Q09316) CDK5RAP1-like protein|
          Length = 547

 Score =  103 bits (256), Expect = 1e-22
 Identities = 54/130 (41%), Positives = 78/130 (60%), Gaps = 2/130 (1%)
 Frame = +3

Query: 3   TYADITPVRISDNSVTAFVSVMRGCNNMCSFCIVPFTXXXXXXXXXXXXXXXXXXLWYAG 182
           TYAD+ P+R+   S TAF+S+MRGC+NMC++C+VPFT                  L   G
Sbjct: 208 TYADVQPIRVDSASKTAFISIMRGCDNMCTYCVVPFTRGRERSRPIESIVEEVQRLRDQG 267

Query: 183 VKEVMLLGQNVNSYNDTSEVE-ELEPGKNWQ-LSEGFSSRCKVKNTGLRFADLLDQLSLE 356
            K+V LLGQNVNSY D + ++  + P  + +    GF +  K K+ GL F  LL++++  
Sbjct: 268 YKQVTLLGQNVNSYRDMTSMDFSMAPSTSQEDRVPGFKTVYKPKSGGLTFTTLLEKVADA 327

Query: 357 YPEMRFRFTS 386
            P++RFRFTS
Sbjct: 328 APDIRFRFTS 337

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>Y392_BUCBP (Q89AC2) Hypothetical UPF0004 protein bbp_392|
          Length = 445

 Score = 64.7 bits (156), Expect = 5e-11
 Identities = 32/60 (53%), Positives = 35/60 (58%)
 Frame = +3

Query: 45  VTAFVSVMRGCNNMCSFCIVPFTXXXXXXXXXXXXXXXXXXLWYAGVKEVMLLGQNVNSY 224
           VTAFVS+M GCN  CSFCIVP+T                  L   GVKE+ LLGQNVNSY
Sbjct: 148 VTAFVSIMEGCNKFCSFCIVPYTRGHEISRPVDDILLEISTLSSRGVKEIHLLGQNVNSY 207

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>Y754_TREPA (O83735) Hypothetical UPF0004 protein TP0754|
          Length = 456

 Score = 61.6 bits (148), Expect = 4e-10
 Identities = 34/93 (36%), Positives = 44/93 (47%)
 Frame = +3

Query: 33  SDNSVTAFVSVMRGCNNMCSFCIVPFTXXXXXXXXXXXXXXXXXXLWYAGVKEVMLLGQN 212
           S+ S  +F+ +M GCNN CSFCIVP+                   L   GV+E+ LLGQN
Sbjct: 148 SEGSFQSFIPIMNGCNNFCSFCIVPYVRGREISRDLDAILQEVDVLSEKGVREITLLGQN 207

Query: 213 VNSYNDTSEVEELEPGKNWQLSEGFSSRCKVKN 311
           VNSY        +      QL      RC+VK+
Sbjct: 208 VNSYRGRDREGNIVTFP--QLLRHLVRRCEVKD 238

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>Y1001_PASMU (Q9L699) Hypothetical UPF0004 protein PM1001|
          Length = 474

 Score = 60.1 bits (144), Expect = 1e-09
 Identities = 29/59 (49%), Positives = 34/59 (57%)
 Frame = +3

Query: 48  TAFVSVMRGCNNMCSFCIVPFTXXXXXXXXXXXXXXXXXXLWYAGVKEVMLLGQNVNSY 224
           TAFVS+M GCN  CSFC+VP+T                  L   GV+EV LLGQNVN+Y
Sbjct: 148 TAFVSIMEGCNKYCSFCVVPYTRGEEVSRPVDDVLFEIAQLAEQGVREVNLLGQNVNAY 206

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>Y3980_PSEAE (Q51470) Hypothetical UPF0004 protein PA3980|
          Length = 446

 Score = 58.9 bits (141), Expect = 3e-09
 Identities = 39/111 (35%), Positives = 51/111 (45%), Gaps = 4/111 (3%)
 Frame = +3

Query: 48  TAFVSVMRGCNNMCSFCIVPFTXXXXXXXXXXXXXXXXXXLWYAGVKEVMLLGQNVNSY- 224
           TAFVSVM GC+  CSFC+VP+T                  L   GV+EV LLGQNVN + 
Sbjct: 148 TAFVSVMEGCSKYCSFCVVPYTRGEEVSRPFDDVIAEVIHLAENGVREVTLLGQNVNGFR 207

Query: 225 ---NDTSEVEELEPGKNWQLSEGFSSRCKVKNTGLRFADLLDQLSLEYPEM 368
              +D    +  E  +     +G        +  L F+D L Q   E PE+
Sbjct: 208 GLTHDGRLADFAELLRVVAAVDGIERIRYTTSHPLEFSDALIQAHAEVPEL 258

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>Y019_HAEIN (Q57163) Hypothetical UPF0004 protein HI0019|
          Length = 474

 Score = 58.9 bits (141), Expect = 3e-09
 Identities = 28/59 (47%), Positives = 34/59 (57%)
 Frame = +3

Query: 48  TAFVSVMRGCNNMCSFCIVPFTXXXXXXXXXXXXXXXXXXLWYAGVKEVMLLGQNVNSY 224
           TAFVS+M GCN  C+FC+VP+T                  L   GV+EV LLGQNVN+Y
Sbjct: 148 TAFVSIMEGCNKYCTFCVVPYTRGEEVSRPVDDVLFEIAQLAEQGVREVNLLGQNVNAY 206

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>YLEA_ECOLI (P0AEI1) Hypothetical UPF0004 protein yleA|
          Length = 474

 Score = 56.6 bits (135), Expect = 1e-08
 Identities = 38/113 (33%), Positives = 52/113 (46%)
 Frame = +3

Query: 48  TAFVSVMRGCNNMCSFCIVPFTXXXXXXXXXXXXXXXXXXLWYAGVKEVMLLGQNVNSYN 227
           TAFVS+M GCN  C++C+VP+T                  L   GV+EV LLGQNVN++ 
Sbjct: 148 TAFVSIMEGCNKYCTYCVVPYTRGEEVSRPSDDILFEIAQLAAQGVREVNLLGQNVNAWR 207

Query: 228 DTSEVEELEPGKNWQLSEGFSSRCKVKNTGLRFADLLDQLSLEYPEMRFRFTS 386
                     G+N+  + G             FADLL  ++      R RFT+
Sbjct: 208 ----------GENYDGTTG------------SFADLLRLVAAIDGIDRIRFTT 238

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>YLEA_ECOL6 (P0AEI2) Hypothetical UPF0004 protein yleA|
          Length = 474

 Score = 56.6 bits (135), Expect = 1e-08
 Identities = 38/113 (33%), Positives = 52/113 (46%)
 Frame = +3

Query: 48  TAFVSVMRGCNNMCSFCIVPFTXXXXXXXXXXXXXXXXXXLWYAGVKEVMLLGQNVNSYN 227
           TAFVS+M GCN  C++C+VP+T                  L   GV+EV LLGQNVN++ 
Sbjct: 148 TAFVSIMEGCNKYCTYCVVPYTRGEEVSRPSDDILFEIAQLAAQGVREVNLLGQNVNAWR 207

Query: 228 DTSEVEELEPGKNWQLSEGFSSRCKVKNTGLRFADLLDQLSLEYPEMRFRFTS 386
                     G+N+  + G             FADLL  ++      R RFT+
Sbjct: 208 ----------GENYDGTTG------------SFADLLRLVAAIDGIDRIRFTT 238

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>YLEA_ECO57 (P0AEI3) Hypothetical UPF0004 protein yleA|
          Length = 474

 Score = 56.6 bits (135), Expect = 1e-08
 Identities = 38/113 (33%), Positives = 52/113 (46%)
 Frame = +3

Query: 48  TAFVSVMRGCNNMCSFCIVPFTXXXXXXXXXXXXXXXXXXLWYAGVKEVMLLGQNVNSYN 227
           TAFVS+M GCN  C++C+VP+T                  L   GV+EV LLGQNVN++ 
Sbjct: 148 TAFVSIMEGCNKYCTYCVVPYTRGEEVSRPSDDILFEIAQLAAQGVREVNLLGQNVNAWR 207

Query: 228 DTSEVEELEPGKNWQLSEGFSSRCKVKNTGLRFADLLDQLSLEYPEMRFRFTS 386
                     G+N+  + G             FADLL  ++      R RFT+
Sbjct: 208 ----------GENYDGTTG------------SFADLLRLVAAIDGIDRIRFTT 238

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>Y441_BUCAI (P57516) Hypothetical UPF0004 protein BU441|
          Length = 439

 Score = 56.2 bits (134), Expect = 2e-08
 Identities = 26/59 (44%), Positives = 33/59 (55%)
 Frame = +3

Query: 48  TAFVSVMRGCNNMCSFCIVPFTXXXXXXXXXXXXXXXXXXLWYAGVKEVMLLGQNVNSY 224
           TA +S+M GCN  CSFC+VP+T                  L   G+KE+ LLGQNVN+Y
Sbjct: 147 TADISIMEGCNKYCSFCVVPYTRGNEISRPCDDVLFEISLLAKQGIKEINLLGQNVNAY 205

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>Y426_BUCAP (Q8K9C2) Hypothetical UPF0004 protein BUsg426|
          Length = 439

 Score = 56.2 bits (134), Expect = 2e-08
 Identities = 26/59 (44%), Positives = 33/59 (55%)
 Frame = +3

Query: 48  TAFVSVMRGCNNMCSFCIVPFTXXXXXXXXXXXXXXXXXXLWYAGVKEVMLLGQNVNSY 224
           TA +S+M GCN  CSFC+VP+T                  L   GV+E+ LLGQNVN+Y
Sbjct: 147 TASISIMEGCNKYCSFCVVPYTRGHEISRPSDDILLEISILAENGVREINLLGQNVNAY 205

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>Y808_RICPR (Q9ZCE8) Hypothetical UPF0004 protein RP808|
          Length = 445

 Score = 52.4 bits (124), Expect = 3e-07
 Identities = 23/72 (31%), Positives = 36/72 (50%)
 Frame = +3

Query: 12  DITPVRISDNSVTAFVSVMRGCNNMCSFCIVPFTXXXXXXXXXXXXXXXXXXLWYAGVKE 191
           D  P ++     ++F+SV  GC+  C+FC+VP+T                        KE
Sbjct: 141 DNLPEQLYPQGASSFISVQEGCDKFCTFCVVPYTRGAEFSRSVEQVYRESLKAVSNDAKE 200

Query: 192 VMLLGQNVNSYN 227
           ++LLGQNVN+Y+
Sbjct: 201 IILLGQNVNAYH 212

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>Y269_HELPY (P56131) Hypothetical UPF0004 protein HP0269|
          Length = 437

 Score = 51.2 bits (121), Expect = 6e-07
 Identities = 34/114 (29%), Positives = 50/114 (43%)
 Frame = +3

Query: 45  VTAFVSVMRGCNNMCSFCIVPFTXXXXXXXXXXXXXXXXXXLWYAGVKEVMLLGQNVNSY 224
           + + +++  GC+  C++CIVP T                  L   G KE+MLLGQNVN+Y
Sbjct: 138 IRSLLNISIGCDKKCAYCIVPHTRGKEISIPMDLILKEAEKLANNGTKELMLLGQNVNNY 197

Query: 225 NDTSEVEELEPGKNWQLSEGFSSRCKVKNTGLRFADLLDQLSLEYPEMRFRFTS 386
                                 +R   ++  + F+DLLD+LS      R RFTS
Sbjct: 198 ---------------------GARFSSEHAKVDFSDLLDKLSEIQGIERIRFTS 230

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>Y269_HELPJ (Q9ZMG6) Hypothetical UPF0004 protein jhp_0254|
          Length = 437

 Score = 51.2 bits (121), Expect = 6e-07
 Identities = 35/114 (30%), Positives = 48/114 (42%)
 Frame = +3

Query: 45  VTAFVSVMRGCNNMCSFCIVPFTXXXXXXXXXXXXXXXXXXLWYAGVKEVMLLGQNVNSY 224
           + + +++  GC+  C++CIVP T                  L   G KE+MLLGQNVN+Y
Sbjct: 138 IRSLLNISIGCDKKCAYCIVPHTRGKEISIPMDLILKEAEKLANNGTKELMLLGQNVNNY 197

Query: 225 NDTSEVEELEPGKNWQLSEGFSSRCKVKNTGLRFADLLDQLSLEYPEMRFRFTS 386
                 E  + G                     F+DLLD+LS      R RFTS
Sbjct: 198 GVRFSSEHAKVG---------------------FSDLLDKLSEIQGIERIRFTS 230

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>YMCB_BACSU (O31778) Hypothetical UPF0004 protein ymcB|
          Length = 509

 Score = 51.2 bits (121), Expect = 6e-07
 Identities = 23/71 (32%), Positives = 36/71 (50%)
 Frame = +3

Query: 27  RISDNSVTAFVSVMRGCNNMCSFCIVPFTXXXXXXXXXXXXXXXXXXLWYAGVKEVMLLG 206
           ++ +  +  +V++M GC+  C++CIVP+T                  L   G KE+ LLG
Sbjct: 205 KVRNGKIKGWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEVRRLASEGYKEITLLG 264

Query: 207 QNVNSYNDTSE 239
           QNVN+Y    E
Sbjct: 265 QNVNAYGKDFE 275

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>Y2752_MYCBO (P67086) Hypothetical UPF0004 protein Mb2752c|
          Length = 512

 Score = 50.4 bits (119), Expect = 1e-06
 Identities = 26/63 (41%), Positives = 33/63 (52%)
 Frame = +3

Query: 36  DNSVTAFVSVMRGCNNMCSFCIVPFTXXXXXXXXXXXXXXXXXXLWYAGVKEVMLLGQNV 215
           +++  A+VS+  GCNN C+FCIVP                    L   GV EV LLGQNV
Sbjct: 165 ESAYAAWVSISVGCNNSCTFCIVPSLRGREVDRSPADILAEVRSLVNDGVLEVTLLGQNV 224

Query: 216 NSY 224
           N+Y
Sbjct: 225 NAY 227

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>Y2733_MYCTU (P67085) Hypothetical UPF0004 protein Rv2733c/MT2803|
          Length = 512

 Score = 50.4 bits (119), Expect = 1e-06
 Identities = 26/63 (41%), Positives = 33/63 (52%)
 Frame = +3

Query: 36  DNSVTAFVSVMRGCNNMCSFCIVPFTXXXXXXXXXXXXXXXXXXLWYAGVKEVMLLGQNV 215
           +++  A+VS+  GCNN C+FCIVP                    L   GV EV LLGQNV
Sbjct: 165 ESAYAAWVSISVGCNNSCTFCIVPSLRGREVDRSPADILAEVRSLVNDGVLEVTLLGQNV 224

Query: 216 NSY 224
           N+Y
Sbjct: 225 NAY 227

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>Y996_SYNY3 (P73127) Hypothetical UPF0004 protein sll0996|
          Length = 451

 Score = 50.4 bits (119), Expect = 1e-06
 Identities = 26/71 (36%), Positives = 39/71 (54%)
 Frame = +3

Query: 12  DITPVRISDNSVTAFVSVMRGCNNMCSFCIVPFTXXXXXXXXXXXXXXXXXXLWYAGVKE 191
           DIT  R  +++V+A+V+++ GCN  CS+C+VP                    L   G KE
Sbjct: 137 DITKPR-RESTVSAWVNIIYGCNERCSYCVVPNVRGVEQSRTPEAIYGEMEVLAQQGFKE 195

Query: 192 VMLLGQNVNSY 224
           V LLGQN+++Y
Sbjct: 196 VTLLGQNIDAY 206

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>Y989_MYCLE (Q49842) Hypothetical UPF0004 protein ML0989|
          Length = 517

 Score = 50.1 bits (118), Expect = 1e-06
 Identities = 26/63 (41%), Positives = 32/63 (50%)
 Frame = +3

Query: 36  DNSVTAFVSVMRGCNNMCSFCIVPFTXXXXXXXXXXXXXXXXXXLWYAGVKEVMLLGQNV 215
           ++   A+VS+  GCNN C+FCIVP                    L   GV EV LLGQNV
Sbjct: 161 ESDYAAWVSISVGCNNSCTFCIVPSLRGKEVDRSPADILAEVEALVADGVLEVTLLGQNV 220

Query: 216 NSY 224
           N+Y
Sbjct: 221 NAY 223

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>Y284_AQUAE (O66638) Hypothetical UPF0004 protein aq_284|
          Length = 440

 Score = 47.8 bits (112), Expect = 7e-06
 Identities = 22/68 (32%), Positives = 35/68 (51%)
 Frame = +3

Query: 36  DNSVTAFVSVMRGCNNMCSFCIVPFTXXXXXXXXXXXXXXXXXXLWYAGVKEVMLLGQNV 215
           DN   A+V++++GC+  C++C+VP T                  L   GV+E+ LLGQNV
Sbjct: 145 DNKYCAYVTIIKGCDKNCTYCVVPRTRGKERSRALHSILDEVKRLVDDGVREIHLLGQNV 204

Query: 216 NSYNDTSE 239
            ++    E
Sbjct: 205 TAWGKDFE 212

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>Y16R_MYCIO (Q49573) Hypothetical UPF0004 protein in 16S RNA 5'region|
          Length = 438

 Score = 42.7 bits (99), Expect = 2e-04
 Identities = 20/60 (33%), Positives = 27/60 (45%)
 Frame = +3

Query: 51  AFVSVMRGCNNMCSFCIVPFTXXXXXXXXXXXXXXXXXXLWYAGVKEVMLLGQNVNSYND 230
           AF+ +  GCN MCS+CI+PF+                  L     KE++L G N   Y D
Sbjct: 151 AFIKIQDGCNFMCSYCIIPFSRGRQRSQKMESILEKIKTLVSKXFKEIVLTGVNTAGYLD 210

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>Y477_CHLPN (Q9Z874) Hypothetical UPF0004 protein|
           CPn_0477/CP0277/CPj0477/CpB0496
          Length = 421

 Score = 42.7 bits (99), Expect = 2e-04
 Identities = 19/60 (31%), Positives = 28/60 (46%)
 Frame = +3

Query: 51  AFVSVMRGCNNMCSFCIVPFTXXXXXXXXXXXXXXXXXXLWYAGVKEVMLLGQNVNSYND 230
           AF+ V  GCN+ CS+CI+P+                   +   G +EV++ G NV  Y D
Sbjct: 137 AFIKVQDGCNSFCSYCIIPYLRGRSVSRPAEKILAEIAGVVDQGYREVVIAGINVGDYCD 196

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>Y416_RICPR (Q9ZDB6) Hypothetical UPF0004 protein RP416|
          Length = 421

 Score = 42.7 bits (99), Expect = 2e-04
 Identities = 19/63 (30%), Positives = 29/63 (46%)
 Frame = +3

Query: 36  DNSVTAFVSVMRGCNNMCSFCIVPFTXXXXXXXXXXXXXXXXXXLWYAGVKEVMLLGQNV 215
           D    AF+ V  GC++ C+FCI+P+                   L   G KEV++ G +V
Sbjct: 135 DGKSRAFIQVQNGCDHNCTFCIIPYVRGKSRSIPIGTIVAQVKHLVLKGFKEVVITGVDV 194

Query: 216 NSY 224
            +Y
Sbjct: 195 TAY 197

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>Y1571_PASMU (Q9CKN9) Hypothetical UPF0004 protein PM1571|
          Length = 446

 Score = 42.4 bits (98), Expect = 3e-04
 Identities = 24/101 (23%), Positives = 45/101 (44%)
 Frame = +3

Query: 51  AFVSVMRGCNNMCSFCIVPFTXXXXXXXXXXXXXXXXXXLWYAGVKEVMLLGQNVNSYND 230
           A++ +  GC++ C+FCI+P                    L  AGVKE++++ Q+ ++Y  
Sbjct: 140 AYLKISEGCDHRCTFCIIPSMRGDLDSRSITQVLDEAKRLVEAGVKEILVVSQDTSAY-- 197

Query: 231 TSEVEELEPGKNWQLSEGFSSRCKVKNTGLRFADLLDQLSL 353
                 L+  K  Q    F +   +KN  +   + L +L +
Sbjct: 198 -----ALDRSKEEQNKTVFWNGMPIKNNLISLCEQLGKLGV 233

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>YLIG_ECOLI (P0AEI4) Hypothetical UPF0004 protein yliG|
          Length = 441

 Score = 41.6 bits (96), Expect = 5e-04
 Identities = 17/58 (29%), Positives = 30/58 (51%)
 Frame = +3

Query: 51  AFVSVMRGCNNMCSFCIVPFTXXXXXXXXXXXXXXXXXXLWYAGVKEVMLLGQNVNSY 224
           A++ +  GCN+ C+FCI+P                    L  AGVKE++++ Q+ ++Y
Sbjct: 142 AYLKISEGCNHRCTFCIIPSMRGDLVSRPIGEVLSEAKRLVDAGVKEILVISQDTSAY 199

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>YLIG_ECO57 (P0AEI5) Hypothetical UPF0004 protein yliG|
          Length = 441

 Score = 41.6 bits (96), Expect = 5e-04
 Identities = 17/58 (29%), Positives = 30/58 (51%)
 Frame = +3

Query: 51  AFVSVMRGCNNMCSFCIVPFTXXXXXXXXXXXXXXXXXXLWYAGVKEVMLLGQNVNSY 224
           A++ +  GCN+ C+FCI+P                    L  AGVKE++++ Q+ ++Y
Sbjct: 142 AYLKISEGCNHRCTFCIIPSMRGDLVSRPIGEVLSEAKRLVDAGVKEILVISQDTSAY 199

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>Y285_HELPY (P56130) Hypothetical UPF0004 protein HP0285|
          Length = 418

 Score = 41.6 bits (96), Expect = 5e-04
 Identities = 22/73 (30%), Positives = 31/73 (42%)
 Frame = +3

Query: 6   YADITPVRISDNSVTAFVSVMRGCNNMCSFCIVPFTXXXXXXXXXXXXXXXXXXLWYAGV 185
           + D T V        AF+ +  GC+  C++CI+P                    L   GV
Sbjct: 121 HLDTTMVSEFVGKTRAFIKIQEGCDFDCNYCIIPSVRGRARSFEERKILEQVGLLCSKGV 180

Query: 186 KEVMLLGQNVNSY 224
           +EV+L G NV SY
Sbjct: 181 QEVVLTGTNVGSY 193

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>Y285_HELPJ (Q9ZMF0) Hypothetical UPF0004 protein jhp_0270|
          Length = 418

 Score = 41.6 bits (96), Expect = 5e-04
 Identities = 22/73 (30%), Positives = 31/73 (42%)
 Frame = +3

Query: 6   YADITPVRISDNSVTAFVSVMRGCNNMCSFCIVPFTXXXXXXXXXXXXXXXXXXLWYAGV 185
           + D T V        AF+ +  GC+  C++CI+P                    L   GV
Sbjct: 121 HLDTTMVSEFVGKTRAFIKIQEGCDFDCNYCIIPSVRGRARSFEERKILEQVGLLCSKGV 180

Query: 186 KEVMLLGQNVNSY 224
           +EV+L G NV SY
Sbjct: 181 QEVVLTGTNVGSY 193

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>Y474_AQUAE (O66772) Hypothetical UPF0004 protein aq_474|
          Length = 410

 Score = 40.8 bits (94), Expect = 8e-04
 Identities = 18/60 (30%), Positives = 26/60 (43%)
 Frame = +3

Query: 45  VTAFVSVMRGCNNMCSFCIVPFTXXXXXXXXXXXXXXXXXXLWYAGVKEVMLLGQNVNSY 224
           V  F+ V  GCN  C+FC++P+                   L   G KEV+L G  ++ Y
Sbjct: 142 VRPFLKVQEGCNKFCTFCVIPYARGKVRSVDLEKIVHQVKLLAQKGFKEVVLTGTQLSQY 201

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>YQEV_BACSU (P54462) Hypothetical UPF0004 protein yqeV|
          Length = 451

 Score = 40.4 bits (93), Expect = 0.001
 Identities = 18/60 (30%), Positives = 27/60 (45%)
 Frame = +3

Query: 51  AFVSVMRGCNNMCSFCIVPFTXXXXXXXXXXXXXXXXXXLWYAGVKEVMLLGQNVNSYND 230
           A + +  GCNN C+FCI+P+                   L  AG KE++L G +   Y +
Sbjct: 145 ASLKIQEGCNNFCTFCIIPWARGLLRSRDPEEVIKQAQQLVDAGYKEIVLTGIHTGGYGE 204

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>Y082_SYNY3 (Q55803) Hypothetical UPF0004 protein slr0082|
          Length = 443

 Score = 37.0 bits (84), Expect = 0.011
 Identities = 18/62 (29%), Positives = 27/62 (43%)
 Frame = +3

Query: 39  NSVTAFVSVMRGCNNMCSFCIVPFTXXXXXXXXXXXXXXXXXXLWYAGVKEVMLLGQNVN 218
           N   A++ V  GC+  C+FCI+P                    L   GVKE++L+ Q   
Sbjct: 142 NEAIAYLRVAEGCDYRCAFCIIPQLRGKQRSRPIESIVAEAEQLASQGVKELILISQITT 201

Query: 219 SY 224
           +Y
Sbjct: 202 NY 203

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>Y849_AQUAE (O67016) Hypothetical UPF0004 protein aq_849|
          Length = 432

 Score = 36.2 bits (82), Expect = 0.020
 Identities = 16/58 (27%), Positives = 25/58 (43%)
 Frame = +3

Query: 51  AFVSVMRGCNNMCSFCIVPFTXXXXXXXXXXXXXXXXXXLWYAGVKEVMLLGQNVNSY 224
           A++ +  GCN +CSFC +P                    L   GVKE+ ++ Q+   Y
Sbjct: 126 AYLKIAEGCNRLCSFCAIPKIRGRHRSRKIEEIVDEAKFLADQGVKEICVVSQDTTYY 183

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>Y269_TREPA (O83293) Hypothetical UPF0004 protein TP0269|
          Length = 482

 Score = 35.4 bits (80), Expect = 0.033
 Identities = 18/62 (29%), Positives = 26/62 (41%)
 Frame = +3

Query: 51  AFVSVMRGCNNMCSFCIVPFTXXXXXXXXXXXXXXXXXXLWYAGVKEVMLLGQNVNSYND 230
           A + V  GCN+ C+FC + F                   L   G+ EV+L G N++ Y  
Sbjct: 205 ASIKVQDGCNSGCAFCRIRFARGRAVSLETHEVIGRVQALEARGMSEVVLTGVNLSQYRS 264

Query: 231 TS 236
            S
Sbjct: 265 GS 266

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>Y1247_ARCFU (O29021) Hypothetical UPF0004 protein AF1247|
          Length = 405

 Score = 35.0 bits (79), Expect = 0.044
 Identities = 18/66 (27%), Positives = 27/66 (40%)
 Frame = +3

Query: 27  RISDNSVTAFVSVMRGCNNMCSFCIVPFTXXXXXXXXXXXXXXXXXXLWYAGVKEVMLLG 206
           R+ +N++ A VS+  GC   CSFC   F                      AG +E+ L  
Sbjct: 109 RLRENAI-AIVSISEGCLGKCSFCATKFARGRLRSFSMDAIVREAERAVRAGYREIQLTS 167

Query: 207 QNVNSY 224
           Q+  +Y
Sbjct: 168 QDTGAY 173

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>Y826_METTH (O26914) Hypothetical UPF0004 protein MTH826|
          Length = 424

 Score = 33.9 bits (76), Expect = 0.097
 Identities = 17/72 (23%), Positives = 27/72 (37%), Gaps = 1/72 (1%)
 Frame = +3

Query: 27  RISDNSVTAFVSVMRGCNNMCSFCIVPFTXXXXXXXXXXXXXXXXXXLWYAGVKEVMLLG 206
           R+  N +   + +  GCN  CS+C   F                      +G +E+ L  
Sbjct: 134 RVRSNPLIHIIPICEGCNGSCSYCCTRFARGRIQSYPSDLIISEAREAVASGCREIQLTA 193

Query: 207 QNVNSYN-DTSE 239
           Q+  +Y  DT E
Sbjct: 194 QDTAAYGVDTGE 205

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>YML9_YEAST (Q03208) Hypothetical 40.1 kDa protein in NDI1-ATR1 intergenic|
           region
          Length = 357

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 17/60 (28%), Positives = 29/60 (48%)
 Frame = -3

Query: 205 PRSITSFTPAYQSSPTSRTTEDTGRDLSLPLVKGTMQNEHILLQPLITDTNAVTELSEIL 26
           PRS+   T     SP   T +D  + + + L+    +  +  LQP+   TN+ T +S+ L
Sbjct: 192 PRSVV--TTYKLPSPVHETIDDISKKIIILLISLKFEKNYHFLQPIQLSTNSKTRISKSL 249

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>HAT2_USTMA (Q4P553) Histone acetyltransferase type B subunit 2 (EC 2.3.1.48)|
          Length = 485

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
 Frame = -3

Query: 325 KRNPVFFTL---HLLENPSLSCQFLPGSNSSTSE 233
           K +P  + L   H LE PSL+CQ+LP   S   +
Sbjct: 80  KNSPFLYDLVVTHALEWPSLTCQWLPDKESPAGQ 113

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>TRDH_CAMPS (Q8QQ34) Transcript release DNA helicase (EC 3.6.1.-)|
          Length = 493

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
 Frame = +3

Query: 195 MLLGQNVNSYNDTSEVEELEPGKNWQ--LSEGFSSRCKVKNTGLRFADL 335
           M  GQ+++ +N+  +  E+EPG +++  + +GF S   VK T L F  L
Sbjct: 17  MTCGQSLSLFNEDGDFVEVEPGSSFKFLIPKGFYSSPSVK-TSLVFETL 64

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>Y1729_PYRAB (Q9UXX9) Hypothetical UPF0004 protein PYRAB17290|
          Length = 425

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 15/66 (22%), Positives = 23/66 (34%)
 Frame = +3

Query: 27  RISDNSVTAFVSVMRGCNNMCSFCIVPFTXXXXXXXXXXXXXXXXXXLWYAGVKEVMLLG 206
           R+S  +V   V +  GC N C++C   F                       G KE+ L  
Sbjct: 132 RLSPRTVYFIVPIAEGCLNACTYCATRFARGVLKSYSPEKIVGWVKWAIKQGYKEIWLSA 191

Query: 207 QNVNSY 224
           ++   Y
Sbjct: 192 EDTGCY 197

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>Y1711_VIBCH (Q9KRD1) UPF0313 protein VC1711|
          Length = 789

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 6/39 (15%)
 Frame = +3

Query: 6   YADITPVRISDNSVTAF------VSVMRGCNNMCSFCIV 104
           YA +   +  D  + A+      V++MRGC   CSFC +
Sbjct: 348 YARVPHPKYGDAKIPAYDMIKTSVNIMRGCFGGCSFCSI 386

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>TRDH_CAMPM (Q8V2N7) Transcript release DNA helicase (EC 3.6.1.-)|
          Length = 493

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 13/42 (30%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
 Frame = +3

Query: 195 MLLGQNVNSYNDTSEVEELEPGKNWQ--LSEGFSSRCKVKNT 314
           M  GQ+++ +N+  +  E+EPG +++  + +GF S   VK +
Sbjct: 17  MTCGQSLSLFNEDGDFVEVEPGSSFKFLIPKGFYSSPSVKTS 58

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>YD6C_SCHPO (Q10324) Hypothetical protein C17G8.12 in chromosome I|
          Length = 608

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
 Frame = -3

Query: 292 LENPS-LSCQFLPGSNSSTSEVSL*LFTF*PRSITSFTPAYQS-SPTSRTTEDTGRDLSL 119
           LE PS L+  + P S+S  S  S+        +I    P + S  PT R T  TG+ +  
Sbjct: 393 LETPSVLTSSYKPSSSSKVSAKSVSRKPTGAPAIPKLPPKHPSRQPTVRATPSTGKQIEP 452

Query: 118 PLVKGTMQNE 89
           P  + ++ NE
Sbjct: 453 PNDEPSIGNE 462

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>FAU_DROME (Q9VGX3) Protein anoxia up-regulated|
          Length = 619

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -3

Query: 214 TF*PRSITSFTPAYQSSPTSRTTEDTGRDLSLPL 113
           T+ P S T++TP+Y  SPT+ T     R    PL
Sbjct: 122 TYIPTSYTTYTPSYAYSPTTVTRVYAPRSSLSPL 155

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>NARQ_ECOLI (P27896) Nitrate/nitrite sensor protein narQ (EC 2.7.13.3)|
          Length = 566

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +3

Query: 225 NDTSEVEELEPGKNWQLSEG 284
           N+ +E  EL  G+NW++SEG
Sbjct: 277 NEAAEYLELNVGENWRISEG 296

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>ZFNL2_ARATH (Q9SQU4) Zinc finger CCCH type domain-containing protein ZFN-like 2|
          Length = 437

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = -3

Query: 280 SLSCQFLPGSNSSTSEVSL*LFTF*PRSITSFTPAYQSSPTSRTT 146
           SLS    PG+  S    S+   T    S T++T  YQS P+S +T
Sbjct: 231 SLSAMPSPGTQPSIGSSSIYGLTPLSPSATAYTGTYQSVPSSNST 275

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>TRDH_VARV (P33827) Transcript release DNA helicase (EC 3.6.1.-) (56 kDa|
           abortive late protein)
          Length = 493

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
 Frame = +3

Query: 174 YAGVKEVMLLGQNVNSYNDTSEVEELEPGK--NWQLSEGFSSRCKVKNTGLRFADL 335
           YA +K++   GQ+++ +N+  +  E+EPG    + + +GF S   VK T L F  L
Sbjct: 11  YAELKKITC-GQSLSLFNEDGDFVEVEPGSLFKFLIPKGFYSSPSVK-TSLVFETL 64

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>Y830_THEMA (Q9WZT7) Hypothetical UPF0004 protein TM0830|
          Length = 434

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 12/64 (18%), Positives = 26/64 (40%), Gaps = 1/64 (1%)
 Frame = +3

Query: 36  DNSVTAFVSVMRGCNNMCSFCIVPFTXXXXXXXX-XXXXXXXXXXLWYAGVKEVMLLGQN 212
           ++   +++ V  GC+N C++C +                      +   G KE+++ G N
Sbjct: 134 EDRTRSYIKVEDGCDNTCTYCAIRLARGTRIRSKPLEIFKEEFAEMVMKGYKEIVITGVN 193

Query: 213 VNSY 224
           +  Y
Sbjct: 194 LGKY 197

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>GHRHR_PIG (P34999) Growth hormone-releasing hormone receptor precursor (GHRH|
           receptor) (GRF receptor) (GRFR)
          Length = 423

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +2

Query: 149 CPRSW*ALVCWRKRSNASW 205
           CPR+W  L+CW       W
Sbjct: 55  CPRTWDGLLCWPTAGPGEW 73

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>TRA1_YEAST (P38811) Transcription-associated protein 1 (p400 kDa component of|
            SAGA)
          Length = 3744

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 22/92 (23%), Positives = 37/92 (40%), Gaps = 2/92 (2%)
 Frame = -2

Query: 296  PAGKSFAELPVFTRL*LLNFRSIIITVYILTKKHYFFYASIPELTNFSDNRRYWA*PLPA 117
            P  +   +LP  T   L+ F + ++  YI  K +  F  + P+   +    RYW   L  
Sbjct: 3264 PFPRKNPKLPENTEKNLVKFSTTLLAPYIRPKFNADFIDNKPDYETYIKRLRYWRRRLEN 3323

Query: 116  SSEGNNAKRAHIVTTPH--N*HERRNRIVRNP 27
              +  + K    V  PH  N H ++   +  P
Sbjct: 3324 KLDRASKKENLEVLCPHLSNFHHQKFEDIEIP 3355


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,824,115
Number of Sequences: 219361
Number of extensions: 1068785
Number of successful extensions: 3011
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 2927
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2976
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 1386249648
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result