Clone Name | basd2i14 |
---|---|
Clone Library Name | barley_pub |
>CK5P1_ARATH (Q8H0V1) CDK5RAP1-like protein| Length = 640 Score = 179 bits (453), Expect = 2e-45 Identities = 89/128 (69%), Positives = 99/128 (77%) Frame = +3 Query: 3 TYADITPVRISDNSVTAFVSVMRGCNNMCSFCIVPFTXXXXXXXXXXXXXXXXXXLWYAG 182 TYADI+PVRIS+NS+TAFVSVMRGCNNMC+FCIVPFT LW +G Sbjct: 272 TYADISPVRISENSITAFVSVMRGCNNMCAFCIVPFTRGRERSRPVESIIREVGELWESG 331 Query: 183 VKEVMLLGQNVNSYNDTSEVEELEPGKNWQLSEGFSSRCKVKNTGLRFADLLDQLSLEYP 362 VKEV LLGQNVNSYND S + E G NW+ SEGFSSRCKVKN GLRFADLLD+LS+E+P Sbjct: 332 VKEVTLLGQNVNSYNDDSA--DRESGANWEYSEGFSSRCKVKNMGLRFADLLDRLSVEFP 389 Query: 363 EMRFRFTS 386 EMRFRFTS Sbjct: 390 EMRFRFTS 397
>CK5P1_RAT (Q9JLH6) CDK5 regulatory subunit-associated protein 1 (CDK5| activator-binding protein C42) Length = 586 Score = 122 bits (307), Expect = 2e-28 Identities = 67/128 (52%), Positives = 82/128 (64%) Frame = +3 Query: 3 TYADITPVRISDNSVTAFVSVMRGCNNMCSFCIVPFTXXXXXXXXXXXXXXXXXXLWYAG 182 TYADI PV+ S ++ +AFVS+MRGC+NMCS+CIVPFT L G Sbjct: 231 TYADIMPVQTSPSATSAFVSIMRGCDNMCSYCIVPFTRGRERSRPVASILDEVRKLSEQG 290 Query: 183 VKEVMLLGQNVNSYNDTSEVEELEPGKNWQLSEGFSSRCKVKNTGLRFADLLDQLSLEYP 362 +KEV LLGQNVNS+ D SEV+ G + LS GF++ K K GLRF+ LLDQ+S P Sbjct: 291 LKEVTLLGQNVNSFRDNSEVQFSSTG-SANLSRGFTTNYKPKQGGLRFSHLLDQVSRIDP 349 Query: 363 EMRFRFTS 386 EMR RFTS Sbjct: 350 EMRIRFTS 357
>CK5P1_MOUSE (Q8BTW8) CDK5 regulatory subunit-associated protein 1 (CDK5| activator-binding protein C42) Length = 588 Score = 122 bits (306), Expect = 2e-28 Identities = 67/128 (52%), Positives = 82/128 (64%) Frame = +3 Query: 3 TYADITPVRISDNSVTAFVSVMRGCNNMCSFCIVPFTXXXXXXXXXXXXXXXXXXLWYAG 182 TYADI PV+ S ++ +AFVS+MRGC+NMCS+CIVPFT L G Sbjct: 233 TYADIMPVQTSPSATSAFVSIMRGCDNMCSYCIVPFTRGRERSRPVASILDEVRKLSEQG 292 Query: 183 VKEVMLLGQNVNSYNDTSEVEELEPGKNWQLSEGFSSRCKVKNTGLRFADLLDQLSLEYP 362 +KEV LLGQNVNS+ D SEV+ G + LS GF++ K K GLRF+ LLDQ+S P Sbjct: 293 LKEVTLLGQNVNSFRDNSEVQFNNAG-SANLSRGFTTNYKPKQGGLRFSHLLDQVSRIDP 351 Query: 363 EMRFRFTS 386 EMR RFTS Sbjct: 352 EMRIRFTS 359
>CK5P1_HUMAN (Q96SZ6) CDK5 regulatory subunit-associated protein 1 (CDK5| activator-binding protein C42) Length = 601 Score = 113 bits (283), Expect = 1e-25 Identities = 66/142 (46%), Positives = 80/142 (56%), Gaps = 14/142 (9%) Frame = +3 Query: 3 TYADITPVRISDNSVTAFVSVMRGCNNMCSFCIVPFTXXXXXXXXXXXXXXXXXXL---- 170 TYAD+ PV+ S ++ +AFVS+MRGC+NMCS+CIVPFT L Sbjct: 234 TYADVMPVQTSASATSAFVSIMRGCDNMCSYCIVPFTRGRERSRPIASILEEVKKLSEQV 293 Query: 171 ----------WYAGVKEVMLLGQNVNSYNDTSEVEELEPGKNWQLSEGFSSRCKVKNTGL 320 G+KEV LLGQNVNS+ D SEV+ LS GF++ K K GL Sbjct: 294 FLPPRPPKVLGLQGLKEVTLLGQNVNSFRDNSEVQ-FNSAVPTNLSRGFTTNYKTKQGGL 352 Query: 321 RFADLLDQLSLEYPEMRFRFTS 386 RFA LLDQ+S PEMR RFTS Sbjct: 353 RFAHLLDQVSRVDPEMRIRFTS 374
>CK5P1_DROME (Q9VGZ1) CDK5RAP1-like protein| Length = 583 Score = 111 bits (277), Expect = 5e-25 Identities = 62/128 (48%), Positives = 76/128 (59%) Frame = +3 Query: 3 TYADITPVRISDNSVTAFVSVMRGCNNMCSFCIVPFTXXXXXXXXXXXXXXXXXXLWYAG 182 TYAD+ PVR++ S TAFVS+MRGC+NMC++CIVPFT L G Sbjct: 227 TYADVMPVRLNSESPTAFVSIMRGCDNMCTYCIVPFTRGRERSRPLASIVAEVKALAEQG 286 Query: 183 VKEVMLLGQNVNSYNDTSEVEELEPGKNWQLSEGFSSRCKVKNTGLRFADLLDQLSLEYP 362 VKEV LLGQNVNSY D + EE + K + GFS+ K K G FA LL ++ P Sbjct: 287 VKEVTLLGQNVNSYRDRTAQEEQDSLKATPV-PGFSTVYKPKTGGTPFAALLRSVAQAVP 345 Query: 363 EMRFRFTS 386 +MR RFTS Sbjct: 346 DMRIRFTS 353
>CK5P1_CAEEL (Q09316) CDK5RAP1-like protein| Length = 547 Score = 103 bits (256), Expect = 1e-22 Identities = 54/130 (41%), Positives = 78/130 (60%), Gaps = 2/130 (1%) Frame = +3 Query: 3 TYADITPVRISDNSVTAFVSVMRGCNNMCSFCIVPFTXXXXXXXXXXXXXXXXXXLWYAG 182 TYAD+ P+R+ S TAF+S+MRGC+NMC++C+VPFT L G Sbjct: 208 TYADVQPIRVDSASKTAFISIMRGCDNMCTYCVVPFTRGRERSRPIESIVEEVQRLRDQG 267 Query: 183 VKEVMLLGQNVNSYNDTSEVE-ELEPGKNWQ-LSEGFSSRCKVKNTGLRFADLLDQLSLE 356 K+V LLGQNVNSY D + ++ + P + + GF + K K+ GL F LL++++ Sbjct: 268 YKQVTLLGQNVNSYRDMTSMDFSMAPSTSQEDRVPGFKTVYKPKSGGLTFTTLLEKVADA 327 Query: 357 YPEMRFRFTS 386 P++RFRFTS Sbjct: 328 APDIRFRFTS 337
>Y392_BUCBP (Q89AC2) Hypothetical UPF0004 protein bbp_392| Length = 445 Score = 64.7 bits (156), Expect = 5e-11 Identities = 32/60 (53%), Positives = 35/60 (58%) Frame = +3 Query: 45 VTAFVSVMRGCNNMCSFCIVPFTXXXXXXXXXXXXXXXXXXLWYAGVKEVMLLGQNVNSY 224 VTAFVS+M GCN CSFCIVP+T L GVKE+ LLGQNVNSY Sbjct: 148 VTAFVSIMEGCNKFCSFCIVPYTRGHEISRPVDDILLEISTLSSRGVKEIHLLGQNVNSY 207
>Y754_TREPA (O83735) Hypothetical UPF0004 protein TP0754| Length = 456 Score = 61.6 bits (148), Expect = 4e-10 Identities = 34/93 (36%), Positives = 44/93 (47%) Frame = +3 Query: 33 SDNSVTAFVSVMRGCNNMCSFCIVPFTXXXXXXXXXXXXXXXXXXLWYAGVKEVMLLGQN 212 S+ S +F+ +M GCNN CSFCIVP+ L GV+E+ LLGQN Sbjct: 148 SEGSFQSFIPIMNGCNNFCSFCIVPYVRGREISRDLDAILQEVDVLSEKGVREITLLGQN 207 Query: 213 VNSYNDTSEVEELEPGKNWQLSEGFSSRCKVKN 311 VNSY + QL RC+VK+ Sbjct: 208 VNSYRGRDREGNIVTFP--QLLRHLVRRCEVKD 238
>Y1001_PASMU (Q9L699) Hypothetical UPF0004 protein PM1001| Length = 474 Score = 60.1 bits (144), Expect = 1e-09 Identities = 29/59 (49%), Positives = 34/59 (57%) Frame = +3 Query: 48 TAFVSVMRGCNNMCSFCIVPFTXXXXXXXXXXXXXXXXXXLWYAGVKEVMLLGQNVNSY 224 TAFVS+M GCN CSFC+VP+T L GV+EV LLGQNVN+Y Sbjct: 148 TAFVSIMEGCNKYCSFCVVPYTRGEEVSRPVDDVLFEIAQLAEQGVREVNLLGQNVNAY 206
>Y3980_PSEAE (Q51470) Hypothetical UPF0004 protein PA3980| Length = 446 Score = 58.9 bits (141), Expect = 3e-09 Identities = 39/111 (35%), Positives = 51/111 (45%), Gaps = 4/111 (3%) Frame = +3 Query: 48 TAFVSVMRGCNNMCSFCIVPFTXXXXXXXXXXXXXXXXXXLWYAGVKEVMLLGQNVNSY- 224 TAFVSVM GC+ CSFC+VP+T L GV+EV LLGQNVN + Sbjct: 148 TAFVSVMEGCSKYCSFCVVPYTRGEEVSRPFDDVIAEVIHLAENGVREVTLLGQNVNGFR 207 Query: 225 ---NDTSEVEELEPGKNWQLSEGFSSRCKVKNTGLRFADLLDQLSLEYPEM 368 +D + E + +G + L F+D L Q E PE+ Sbjct: 208 GLTHDGRLADFAELLRVVAAVDGIERIRYTTSHPLEFSDALIQAHAEVPEL 258
>Y019_HAEIN (Q57163) Hypothetical UPF0004 protein HI0019| Length = 474 Score = 58.9 bits (141), Expect = 3e-09 Identities = 28/59 (47%), Positives = 34/59 (57%) Frame = +3 Query: 48 TAFVSVMRGCNNMCSFCIVPFTXXXXXXXXXXXXXXXXXXLWYAGVKEVMLLGQNVNSY 224 TAFVS+M GCN C+FC+VP+T L GV+EV LLGQNVN+Y Sbjct: 148 TAFVSIMEGCNKYCTFCVVPYTRGEEVSRPVDDVLFEIAQLAEQGVREVNLLGQNVNAY 206
>YLEA_ECOLI (P0AEI1) Hypothetical UPF0004 protein yleA| Length = 474 Score = 56.6 bits (135), Expect = 1e-08 Identities = 38/113 (33%), Positives = 52/113 (46%) Frame = +3 Query: 48 TAFVSVMRGCNNMCSFCIVPFTXXXXXXXXXXXXXXXXXXLWYAGVKEVMLLGQNVNSYN 227 TAFVS+M GCN C++C+VP+T L GV+EV LLGQNVN++ Sbjct: 148 TAFVSIMEGCNKYCTYCVVPYTRGEEVSRPSDDILFEIAQLAAQGVREVNLLGQNVNAWR 207 Query: 228 DTSEVEELEPGKNWQLSEGFSSRCKVKNTGLRFADLLDQLSLEYPEMRFRFTS 386 G+N+ + G FADLL ++ R RFT+ Sbjct: 208 ----------GENYDGTTG------------SFADLLRLVAAIDGIDRIRFTT 238
>YLEA_ECOL6 (P0AEI2) Hypothetical UPF0004 protein yleA| Length = 474 Score = 56.6 bits (135), Expect = 1e-08 Identities = 38/113 (33%), Positives = 52/113 (46%) Frame = +3 Query: 48 TAFVSVMRGCNNMCSFCIVPFTXXXXXXXXXXXXXXXXXXLWYAGVKEVMLLGQNVNSYN 227 TAFVS+M GCN C++C+VP+T L GV+EV LLGQNVN++ Sbjct: 148 TAFVSIMEGCNKYCTYCVVPYTRGEEVSRPSDDILFEIAQLAAQGVREVNLLGQNVNAWR 207 Query: 228 DTSEVEELEPGKNWQLSEGFSSRCKVKNTGLRFADLLDQLSLEYPEMRFRFTS 386 G+N+ + G FADLL ++ R RFT+ Sbjct: 208 ----------GENYDGTTG------------SFADLLRLVAAIDGIDRIRFTT 238
>YLEA_ECO57 (P0AEI3) Hypothetical UPF0004 protein yleA| Length = 474 Score = 56.6 bits (135), Expect = 1e-08 Identities = 38/113 (33%), Positives = 52/113 (46%) Frame = +3 Query: 48 TAFVSVMRGCNNMCSFCIVPFTXXXXXXXXXXXXXXXXXXLWYAGVKEVMLLGQNVNSYN 227 TAFVS+M GCN C++C+VP+T L GV+EV LLGQNVN++ Sbjct: 148 TAFVSIMEGCNKYCTYCVVPYTRGEEVSRPSDDILFEIAQLAAQGVREVNLLGQNVNAWR 207 Query: 228 DTSEVEELEPGKNWQLSEGFSSRCKVKNTGLRFADLLDQLSLEYPEMRFRFTS 386 G+N+ + G FADLL ++ R RFT+ Sbjct: 208 ----------GENYDGTTG------------SFADLLRLVAAIDGIDRIRFTT 238
>Y441_BUCAI (P57516) Hypothetical UPF0004 protein BU441| Length = 439 Score = 56.2 bits (134), Expect = 2e-08 Identities = 26/59 (44%), Positives = 33/59 (55%) Frame = +3 Query: 48 TAFVSVMRGCNNMCSFCIVPFTXXXXXXXXXXXXXXXXXXLWYAGVKEVMLLGQNVNSY 224 TA +S+M GCN CSFC+VP+T L G+KE+ LLGQNVN+Y Sbjct: 147 TADISIMEGCNKYCSFCVVPYTRGNEISRPCDDVLFEISLLAKQGIKEINLLGQNVNAY 205
>Y426_BUCAP (Q8K9C2) Hypothetical UPF0004 protein BUsg426| Length = 439 Score = 56.2 bits (134), Expect = 2e-08 Identities = 26/59 (44%), Positives = 33/59 (55%) Frame = +3 Query: 48 TAFVSVMRGCNNMCSFCIVPFTXXXXXXXXXXXXXXXXXXLWYAGVKEVMLLGQNVNSY 224 TA +S+M GCN CSFC+VP+T L GV+E+ LLGQNVN+Y Sbjct: 147 TASISIMEGCNKYCSFCVVPYTRGHEISRPSDDILLEISILAENGVREINLLGQNVNAY 205
>Y808_RICPR (Q9ZCE8) Hypothetical UPF0004 protein RP808| Length = 445 Score = 52.4 bits (124), Expect = 3e-07 Identities = 23/72 (31%), Positives = 36/72 (50%) Frame = +3 Query: 12 DITPVRISDNSVTAFVSVMRGCNNMCSFCIVPFTXXXXXXXXXXXXXXXXXXLWYAGVKE 191 D P ++ ++F+SV GC+ C+FC+VP+T KE Sbjct: 141 DNLPEQLYPQGASSFISVQEGCDKFCTFCVVPYTRGAEFSRSVEQVYRESLKAVSNDAKE 200 Query: 192 VMLLGQNVNSYN 227 ++LLGQNVN+Y+ Sbjct: 201 IILLGQNVNAYH 212
>Y269_HELPY (P56131) Hypothetical UPF0004 protein HP0269| Length = 437 Score = 51.2 bits (121), Expect = 6e-07 Identities = 34/114 (29%), Positives = 50/114 (43%) Frame = +3 Query: 45 VTAFVSVMRGCNNMCSFCIVPFTXXXXXXXXXXXXXXXXXXLWYAGVKEVMLLGQNVNSY 224 + + +++ GC+ C++CIVP T L G KE+MLLGQNVN+Y Sbjct: 138 IRSLLNISIGCDKKCAYCIVPHTRGKEISIPMDLILKEAEKLANNGTKELMLLGQNVNNY 197 Query: 225 NDTSEVEELEPGKNWQLSEGFSSRCKVKNTGLRFADLLDQLSLEYPEMRFRFTS 386 +R ++ + F+DLLD+LS R RFTS Sbjct: 198 ---------------------GARFSSEHAKVDFSDLLDKLSEIQGIERIRFTS 230
>Y269_HELPJ (Q9ZMG6) Hypothetical UPF0004 protein jhp_0254| Length = 437 Score = 51.2 bits (121), Expect = 6e-07 Identities = 35/114 (30%), Positives = 48/114 (42%) Frame = +3 Query: 45 VTAFVSVMRGCNNMCSFCIVPFTXXXXXXXXXXXXXXXXXXLWYAGVKEVMLLGQNVNSY 224 + + +++ GC+ C++CIVP T L G KE+MLLGQNVN+Y Sbjct: 138 IRSLLNISIGCDKKCAYCIVPHTRGKEISIPMDLILKEAEKLANNGTKELMLLGQNVNNY 197 Query: 225 NDTSEVEELEPGKNWQLSEGFSSRCKVKNTGLRFADLLDQLSLEYPEMRFRFTS 386 E + G F+DLLD+LS R RFTS Sbjct: 198 GVRFSSEHAKVG---------------------FSDLLDKLSEIQGIERIRFTS 230
>YMCB_BACSU (O31778) Hypothetical UPF0004 protein ymcB| Length = 509 Score = 51.2 bits (121), Expect = 6e-07 Identities = 23/71 (32%), Positives = 36/71 (50%) Frame = +3 Query: 27 RISDNSVTAFVSVMRGCNNMCSFCIVPFTXXXXXXXXXXXXXXXXXXLWYAGVKEVMLLG 206 ++ + + +V++M GC+ C++CIVP+T L G KE+ LLG Sbjct: 205 KVRNGKIKGWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEVRRLASEGYKEITLLG 264 Query: 207 QNVNSYNDTSE 239 QNVN+Y E Sbjct: 265 QNVNAYGKDFE 275
>Y2752_MYCBO (P67086) Hypothetical UPF0004 protein Mb2752c| Length = 512 Score = 50.4 bits (119), Expect = 1e-06 Identities = 26/63 (41%), Positives = 33/63 (52%) Frame = +3 Query: 36 DNSVTAFVSVMRGCNNMCSFCIVPFTXXXXXXXXXXXXXXXXXXLWYAGVKEVMLLGQNV 215 +++ A+VS+ GCNN C+FCIVP L GV EV LLGQNV Sbjct: 165 ESAYAAWVSISVGCNNSCTFCIVPSLRGREVDRSPADILAEVRSLVNDGVLEVTLLGQNV 224 Query: 216 NSY 224 N+Y Sbjct: 225 NAY 227
>Y2733_MYCTU (P67085) Hypothetical UPF0004 protein Rv2733c/MT2803| Length = 512 Score = 50.4 bits (119), Expect = 1e-06 Identities = 26/63 (41%), Positives = 33/63 (52%) Frame = +3 Query: 36 DNSVTAFVSVMRGCNNMCSFCIVPFTXXXXXXXXXXXXXXXXXXLWYAGVKEVMLLGQNV 215 +++ A+VS+ GCNN C+FCIVP L GV EV LLGQNV Sbjct: 165 ESAYAAWVSISVGCNNSCTFCIVPSLRGREVDRSPADILAEVRSLVNDGVLEVTLLGQNV 224 Query: 216 NSY 224 N+Y Sbjct: 225 NAY 227
>Y996_SYNY3 (P73127) Hypothetical UPF0004 protein sll0996| Length = 451 Score = 50.4 bits (119), Expect = 1e-06 Identities = 26/71 (36%), Positives = 39/71 (54%) Frame = +3 Query: 12 DITPVRISDNSVTAFVSVMRGCNNMCSFCIVPFTXXXXXXXXXXXXXXXXXXLWYAGVKE 191 DIT R +++V+A+V+++ GCN CS+C+VP L G KE Sbjct: 137 DITKPR-RESTVSAWVNIIYGCNERCSYCVVPNVRGVEQSRTPEAIYGEMEVLAQQGFKE 195 Query: 192 VMLLGQNVNSY 224 V LLGQN+++Y Sbjct: 196 VTLLGQNIDAY 206
>Y989_MYCLE (Q49842) Hypothetical UPF0004 protein ML0989| Length = 517 Score = 50.1 bits (118), Expect = 1e-06 Identities = 26/63 (41%), Positives = 32/63 (50%) Frame = +3 Query: 36 DNSVTAFVSVMRGCNNMCSFCIVPFTXXXXXXXXXXXXXXXXXXLWYAGVKEVMLLGQNV 215 ++ A+VS+ GCNN C+FCIVP L GV EV LLGQNV Sbjct: 161 ESDYAAWVSISVGCNNSCTFCIVPSLRGKEVDRSPADILAEVEALVADGVLEVTLLGQNV 220 Query: 216 NSY 224 N+Y Sbjct: 221 NAY 223
>Y284_AQUAE (O66638) Hypothetical UPF0004 protein aq_284| Length = 440 Score = 47.8 bits (112), Expect = 7e-06 Identities = 22/68 (32%), Positives = 35/68 (51%) Frame = +3 Query: 36 DNSVTAFVSVMRGCNNMCSFCIVPFTXXXXXXXXXXXXXXXXXXLWYAGVKEVMLLGQNV 215 DN A+V++++GC+ C++C+VP T L GV+E+ LLGQNV Sbjct: 145 DNKYCAYVTIIKGCDKNCTYCVVPRTRGKERSRALHSILDEVKRLVDDGVREIHLLGQNV 204 Query: 216 NSYNDTSE 239 ++ E Sbjct: 205 TAWGKDFE 212
>Y16R_MYCIO (Q49573) Hypothetical UPF0004 protein in 16S RNA 5'region| Length = 438 Score = 42.7 bits (99), Expect = 2e-04 Identities = 20/60 (33%), Positives = 27/60 (45%) Frame = +3 Query: 51 AFVSVMRGCNNMCSFCIVPFTXXXXXXXXXXXXXXXXXXLWYAGVKEVMLLGQNVNSYND 230 AF+ + GCN MCS+CI+PF+ L KE++L G N Y D Sbjct: 151 AFIKIQDGCNFMCSYCIIPFSRGRQRSQKMESILEKIKTLVSKXFKEIVLTGVNTAGYLD 210
>Y477_CHLPN (Q9Z874) Hypothetical UPF0004 protein| CPn_0477/CP0277/CPj0477/CpB0496 Length = 421 Score = 42.7 bits (99), Expect = 2e-04 Identities = 19/60 (31%), Positives = 28/60 (46%) Frame = +3 Query: 51 AFVSVMRGCNNMCSFCIVPFTXXXXXXXXXXXXXXXXXXLWYAGVKEVMLLGQNVNSYND 230 AF+ V GCN+ CS+CI+P+ + G +EV++ G NV Y D Sbjct: 137 AFIKVQDGCNSFCSYCIIPYLRGRSVSRPAEKILAEIAGVVDQGYREVVIAGINVGDYCD 196
>Y416_RICPR (Q9ZDB6) Hypothetical UPF0004 protein RP416| Length = 421 Score = 42.7 bits (99), Expect = 2e-04 Identities = 19/63 (30%), Positives = 29/63 (46%) Frame = +3 Query: 36 DNSVTAFVSVMRGCNNMCSFCIVPFTXXXXXXXXXXXXXXXXXXLWYAGVKEVMLLGQNV 215 D AF+ V GC++ C+FCI+P+ L G KEV++ G +V Sbjct: 135 DGKSRAFIQVQNGCDHNCTFCIIPYVRGKSRSIPIGTIVAQVKHLVLKGFKEVVITGVDV 194 Query: 216 NSY 224 +Y Sbjct: 195 TAY 197
>Y1571_PASMU (Q9CKN9) Hypothetical UPF0004 protein PM1571| Length = 446 Score = 42.4 bits (98), Expect = 3e-04 Identities = 24/101 (23%), Positives = 45/101 (44%) Frame = +3 Query: 51 AFVSVMRGCNNMCSFCIVPFTXXXXXXXXXXXXXXXXXXLWYAGVKEVMLLGQNVNSYND 230 A++ + GC++ C+FCI+P L AGVKE++++ Q+ ++Y Sbjct: 140 AYLKISEGCDHRCTFCIIPSMRGDLDSRSITQVLDEAKRLVEAGVKEILVVSQDTSAY-- 197 Query: 231 TSEVEELEPGKNWQLSEGFSSRCKVKNTGLRFADLLDQLSL 353 L+ K Q F + +KN + + L +L + Sbjct: 198 -----ALDRSKEEQNKTVFWNGMPIKNNLISLCEQLGKLGV 233
>YLIG_ECOLI (P0AEI4) Hypothetical UPF0004 protein yliG| Length = 441 Score = 41.6 bits (96), Expect = 5e-04 Identities = 17/58 (29%), Positives = 30/58 (51%) Frame = +3 Query: 51 AFVSVMRGCNNMCSFCIVPFTXXXXXXXXXXXXXXXXXXLWYAGVKEVMLLGQNVNSY 224 A++ + GCN+ C+FCI+P L AGVKE++++ Q+ ++Y Sbjct: 142 AYLKISEGCNHRCTFCIIPSMRGDLVSRPIGEVLSEAKRLVDAGVKEILVISQDTSAY 199
>YLIG_ECO57 (P0AEI5) Hypothetical UPF0004 protein yliG| Length = 441 Score = 41.6 bits (96), Expect = 5e-04 Identities = 17/58 (29%), Positives = 30/58 (51%) Frame = +3 Query: 51 AFVSVMRGCNNMCSFCIVPFTXXXXXXXXXXXXXXXXXXLWYAGVKEVMLLGQNVNSY 224 A++ + GCN+ C+FCI+P L AGVKE++++ Q+ ++Y Sbjct: 142 AYLKISEGCNHRCTFCIIPSMRGDLVSRPIGEVLSEAKRLVDAGVKEILVISQDTSAY 199
>Y285_HELPY (P56130) Hypothetical UPF0004 protein HP0285| Length = 418 Score = 41.6 bits (96), Expect = 5e-04 Identities = 22/73 (30%), Positives = 31/73 (42%) Frame = +3 Query: 6 YADITPVRISDNSVTAFVSVMRGCNNMCSFCIVPFTXXXXXXXXXXXXXXXXXXLWYAGV 185 + D T V AF+ + GC+ C++CI+P L GV Sbjct: 121 HLDTTMVSEFVGKTRAFIKIQEGCDFDCNYCIIPSVRGRARSFEERKILEQVGLLCSKGV 180 Query: 186 KEVMLLGQNVNSY 224 +EV+L G NV SY Sbjct: 181 QEVVLTGTNVGSY 193
>Y285_HELPJ (Q9ZMF0) Hypothetical UPF0004 protein jhp_0270| Length = 418 Score = 41.6 bits (96), Expect = 5e-04 Identities = 22/73 (30%), Positives = 31/73 (42%) Frame = +3 Query: 6 YADITPVRISDNSVTAFVSVMRGCNNMCSFCIVPFTXXXXXXXXXXXXXXXXXXLWYAGV 185 + D T V AF+ + GC+ C++CI+P L GV Sbjct: 121 HLDTTMVSEFVGKTRAFIKIQEGCDFDCNYCIIPSVRGRARSFEERKILEQVGLLCSKGV 180 Query: 186 KEVMLLGQNVNSY 224 +EV+L G NV SY Sbjct: 181 QEVVLTGTNVGSY 193
>Y474_AQUAE (O66772) Hypothetical UPF0004 protein aq_474| Length = 410 Score = 40.8 bits (94), Expect = 8e-04 Identities = 18/60 (30%), Positives = 26/60 (43%) Frame = +3 Query: 45 VTAFVSVMRGCNNMCSFCIVPFTXXXXXXXXXXXXXXXXXXLWYAGVKEVMLLGQNVNSY 224 V F+ V GCN C+FC++P+ L G KEV+L G ++ Y Sbjct: 142 VRPFLKVQEGCNKFCTFCVIPYARGKVRSVDLEKIVHQVKLLAQKGFKEVVLTGTQLSQY 201
>YQEV_BACSU (P54462) Hypothetical UPF0004 protein yqeV| Length = 451 Score = 40.4 bits (93), Expect = 0.001 Identities = 18/60 (30%), Positives = 27/60 (45%) Frame = +3 Query: 51 AFVSVMRGCNNMCSFCIVPFTXXXXXXXXXXXXXXXXXXLWYAGVKEVMLLGQNVNSYND 230 A + + GCNN C+FCI+P+ L AG KE++L G + Y + Sbjct: 145 ASLKIQEGCNNFCTFCIIPWARGLLRSRDPEEVIKQAQQLVDAGYKEIVLTGIHTGGYGE 204
>Y082_SYNY3 (Q55803) Hypothetical UPF0004 protein slr0082| Length = 443 Score = 37.0 bits (84), Expect = 0.011 Identities = 18/62 (29%), Positives = 27/62 (43%) Frame = +3 Query: 39 NSVTAFVSVMRGCNNMCSFCIVPFTXXXXXXXXXXXXXXXXXXLWYAGVKEVMLLGQNVN 218 N A++ V GC+ C+FCI+P L GVKE++L+ Q Sbjct: 142 NEAIAYLRVAEGCDYRCAFCIIPQLRGKQRSRPIESIVAEAEQLASQGVKELILISQITT 201 Query: 219 SY 224 +Y Sbjct: 202 NY 203
>Y849_AQUAE (O67016) Hypothetical UPF0004 protein aq_849| Length = 432 Score = 36.2 bits (82), Expect = 0.020 Identities = 16/58 (27%), Positives = 25/58 (43%) Frame = +3 Query: 51 AFVSVMRGCNNMCSFCIVPFTXXXXXXXXXXXXXXXXXXLWYAGVKEVMLLGQNVNSY 224 A++ + GCN +CSFC +P L GVKE+ ++ Q+ Y Sbjct: 126 AYLKIAEGCNRLCSFCAIPKIRGRHRSRKIEEIVDEAKFLADQGVKEICVVSQDTTYY 183
>Y269_TREPA (O83293) Hypothetical UPF0004 protein TP0269| Length = 482 Score = 35.4 bits (80), Expect = 0.033 Identities = 18/62 (29%), Positives = 26/62 (41%) Frame = +3 Query: 51 AFVSVMRGCNNMCSFCIVPFTXXXXXXXXXXXXXXXXXXLWYAGVKEVMLLGQNVNSYND 230 A + V GCN+ C+FC + F L G+ EV+L G N++ Y Sbjct: 205 ASIKVQDGCNSGCAFCRIRFARGRAVSLETHEVIGRVQALEARGMSEVVLTGVNLSQYRS 264 Query: 231 TS 236 S Sbjct: 265 GS 266
>Y1247_ARCFU (O29021) Hypothetical UPF0004 protein AF1247| Length = 405 Score = 35.0 bits (79), Expect = 0.044 Identities = 18/66 (27%), Positives = 27/66 (40%) Frame = +3 Query: 27 RISDNSVTAFVSVMRGCNNMCSFCIVPFTXXXXXXXXXXXXXXXXXXLWYAGVKEVMLLG 206 R+ +N++ A VS+ GC CSFC F AG +E+ L Sbjct: 109 RLRENAI-AIVSISEGCLGKCSFCATKFARGRLRSFSMDAIVREAERAVRAGYREIQLTS 167 Query: 207 QNVNSY 224 Q+ +Y Sbjct: 168 QDTGAY 173
>Y826_METTH (O26914) Hypothetical UPF0004 protein MTH826| Length = 424 Score = 33.9 bits (76), Expect = 0.097 Identities = 17/72 (23%), Positives = 27/72 (37%), Gaps = 1/72 (1%) Frame = +3 Query: 27 RISDNSVTAFVSVMRGCNNMCSFCIVPFTXXXXXXXXXXXXXXXXXXLWYAGVKEVMLLG 206 R+ N + + + GCN CS+C F +G +E+ L Sbjct: 134 RVRSNPLIHIIPICEGCNGSCSYCCTRFARGRIQSYPSDLIISEAREAVASGCREIQLTA 193 Query: 207 QNVNSYN-DTSE 239 Q+ +Y DT E Sbjct: 194 QDTAAYGVDTGE 205
>YML9_YEAST (Q03208) Hypothetical 40.1 kDa protein in NDI1-ATR1 intergenic| region Length = 357 Score = 29.6 bits (65), Expect = 1.8 Identities = 17/60 (28%), Positives = 29/60 (48%) Frame = -3 Query: 205 PRSITSFTPAYQSSPTSRTTEDTGRDLSLPLVKGTMQNEHILLQPLITDTNAVTELSEIL 26 PRS+ T SP T +D + + + L+ + + LQP+ TN+ T +S+ L Sbjct: 192 PRSVV--TTYKLPSPVHETIDDISKKIIILLISLKFEKNYHFLQPIQLSTNSKTRISKSL 249
>HAT2_USTMA (Q4P553) Histone acetyltransferase type B subunit 2 (EC 2.3.1.48)| Length = 485 Score = 28.5 bits (62), Expect = 4.1 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 3/34 (8%) Frame = -3 Query: 325 KRNPVFFTL---HLLENPSLSCQFLPGSNSSTSE 233 K +P + L H LE PSL+CQ+LP S + Sbjct: 80 KNSPFLYDLVVTHALEWPSLTCQWLPDKESPAGQ 113
>TRDH_CAMPS (Q8QQ34) Transcript release DNA helicase (EC 3.6.1.-)| Length = 493 Score = 28.1 bits (61), Expect = 5.3 Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 2/49 (4%) Frame = +3 Query: 195 MLLGQNVNSYNDTSEVEELEPGKNWQ--LSEGFSSRCKVKNTGLRFADL 335 M GQ+++ +N+ + E+EPG +++ + +GF S VK T L F L Sbjct: 17 MTCGQSLSLFNEDGDFVEVEPGSSFKFLIPKGFYSSPSVK-TSLVFETL 64
>Y1729_PYRAB (Q9UXX9) Hypothetical UPF0004 protein PYRAB17290| Length = 425 Score = 27.7 bits (60), Expect = 7.0 Identities = 15/66 (22%), Positives = 23/66 (34%) Frame = +3 Query: 27 RISDNSVTAFVSVMRGCNNMCSFCIVPFTXXXXXXXXXXXXXXXXXXLWYAGVKEVMLLG 206 R+S +V V + GC N C++C F G KE+ L Sbjct: 132 RLSPRTVYFIVPIAEGCLNACTYCATRFARGVLKSYSPEKIVGWVKWAIKQGYKEIWLSA 191 Query: 207 QNVNSY 224 ++ Y Sbjct: 192 EDTGCY 197
>Y1711_VIBCH (Q9KRD1) UPF0313 protein VC1711| Length = 789 Score = 27.7 bits (60), Expect = 7.0 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 6/39 (15%) Frame = +3 Query: 6 YADITPVRISDNSVTAF------VSVMRGCNNMCSFCIV 104 YA + + D + A+ V++MRGC CSFC + Sbjct: 348 YARVPHPKYGDAKIPAYDMIKTSVNIMRGCFGGCSFCSI 386
>TRDH_CAMPM (Q8V2N7) Transcript release DNA helicase (EC 3.6.1.-)| Length = 493 Score = 27.7 bits (60), Expect = 7.0 Identities = 13/42 (30%), Positives = 26/42 (61%), Gaps = 2/42 (4%) Frame = +3 Query: 195 MLLGQNVNSYNDTSEVEELEPGKNWQ--LSEGFSSRCKVKNT 314 M GQ+++ +N+ + E+EPG +++ + +GF S VK + Sbjct: 17 MTCGQSLSLFNEDGDFVEVEPGSSFKFLIPKGFYSSPSVKTS 58
>YD6C_SCHPO (Q10324) Hypothetical protein C17G8.12 in chromosome I| Length = 608 Score = 27.7 bits (60), Expect = 7.0 Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 2/70 (2%) Frame = -3 Query: 292 LENPS-LSCQFLPGSNSSTSEVSL*LFTF*PRSITSFTPAYQS-SPTSRTTEDTGRDLSL 119 LE PS L+ + P S+S S S+ +I P + S PT R T TG+ + Sbjct: 393 LETPSVLTSSYKPSSSSKVSAKSVSRKPTGAPAIPKLPPKHPSRQPTVRATPSTGKQIEP 452 Query: 118 PLVKGTMQNE 89 P + ++ NE Sbjct: 453 PNDEPSIGNE 462
>FAU_DROME (Q9VGX3) Protein anoxia up-regulated| Length = 619 Score = 27.7 bits (60), Expect = 7.0 Identities = 14/34 (41%), Positives = 19/34 (55%) Frame = -3 Query: 214 TF*PRSITSFTPAYQSSPTSRTTEDTGRDLSLPL 113 T+ P S T++TP+Y SPT+ T R PL Sbjct: 122 TYIPTSYTTYTPSYAYSPTTVTRVYAPRSSLSPL 155
>NARQ_ECOLI (P27896) Nitrate/nitrite sensor protein narQ (EC 2.7.13.3)| Length = 566 Score = 27.3 bits (59), Expect = 9.1 Identities = 10/20 (50%), Positives = 15/20 (75%) Frame = +3 Query: 225 NDTSEVEELEPGKNWQLSEG 284 N+ +E EL G+NW++SEG Sbjct: 277 NEAAEYLELNVGENWRISEG 296
>ZFNL2_ARATH (Q9SQU4) Zinc finger CCCH type domain-containing protein ZFN-like 2| Length = 437 Score = 27.3 bits (59), Expect = 9.1 Identities = 17/45 (37%), Positives = 23/45 (51%) Frame = -3 Query: 280 SLSCQFLPGSNSSTSEVSL*LFTF*PRSITSFTPAYQSSPTSRTT 146 SLS PG+ S S+ T S T++T YQS P+S +T Sbjct: 231 SLSAMPSPGTQPSIGSSSIYGLTPLSPSATAYTGTYQSVPSSNST 275
>TRDH_VARV (P33827) Transcript release DNA helicase (EC 3.6.1.-) (56 kDa| abortive late protein) Length = 493 Score = 27.3 bits (59), Expect = 9.1 Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 2/56 (3%) Frame = +3 Query: 174 YAGVKEVMLLGQNVNSYNDTSEVEELEPGK--NWQLSEGFSSRCKVKNTGLRFADL 335 YA +K++ GQ+++ +N+ + E+EPG + + +GF S VK T L F L Sbjct: 11 YAELKKITC-GQSLSLFNEDGDFVEVEPGSLFKFLIPKGFYSSPSVK-TSLVFETL 64
>Y830_THEMA (Q9WZT7) Hypothetical UPF0004 protein TM0830| Length = 434 Score = 27.3 bits (59), Expect = 9.1 Identities = 12/64 (18%), Positives = 26/64 (40%), Gaps = 1/64 (1%) Frame = +3 Query: 36 DNSVTAFVSVMRGCNNMCSFCIVPFTXXXXXXXX-XXXXXXXXXXLWYAGVKEVMLLGQN 212 ++ +++ V GC+N C++C + + G KE+++ G N Sbjct: 134 EDRTRSYIKVEDGCDNTCTYCAIRLARGTRIRSKPLEIFKEEFAEMVMKGYKEIVITGVN 193 Query: 213 VNSY 224 + Y Sbjct: 194 LGKY 197
>GHRHR_PIG (P34999) Growth hormone-releasing hormone receptor precursor (GHRH| receptor) (GRF receptor) (GRFR) Length = 423 Score = 27.3 bits (59), Expect = 9.1 Identities = 8/19 (42%), Positives = 10/19 (52%) Frame = +2 Query: 149 CPRSW*ALVCWRKRSNASW 205 CPR+W L+CW W Sbjct: 55 CPRTWDGLLCWPTAGPGEW 73
>TRA1_YEAST (P38811) Transcription-associated protein 1 (p400 kDa component of| SAGA) Length = 3744 Score = 27.3 bits (59), Expect = 9.1 Identities = 22/92 (23%), Positives = 37/92 (40%), Gaps = 2/92 (2%) Frame = -2 Query: 296 PAGKSFAELPVFTRL*LLNFRSIIITVYILTKKHYFFYASIPELTNFSDNRRYWA*PLPA 117 P + +LP T L+ F + ++ YI K + F + P+ + RYW L Sbjct: 3264 PFPRKNPKLPENTEKNLVKFSTTLLAPYIRPKFNADFIDNKPDYETYIKRLRYWRRRLEN 3323 Query: 116 SSEGNNAKRAHIVTTPH--N*HERRNRIVRNP 27 + + K V PH N H ++ + P Sbjct: 3324 KLDRASKKENLEVLCPHLSNFHHQKFEDIEIP 3355 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 55,824,115 Number of Sequences: 219361 Number of extensions: 1068785 Number of successful extensions: 3011 Number of sequences better than 10.0: 54 Number of HSP's better than 10.0 without gapping: 2927 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2976 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 1386249648 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)