Clone Name | basd2i14 |
---|---|
Clone Library Name | barley_pub |
>gb|AC137744.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0074L11, complete sequence Length = 180703 Score = 410 bits (207), Expect = e-111 Identities = 342/387 (88%) Strand = Plus / Minus Query: 1 agacttatgctgacatcaccccagttaggatttctgacaattcggttacggcgttcgtgt 60 |||| |||||||||||||||||||||||||| ||||||||||| || || || || || | Sbjct: 61879 agacgtatgctgacatcaccccagttaggatctctgacaattcagtgaccgcatttgtat 61820 Query: 61 cagttatgaggggttgtaacaatatgtgctcgttttgcattgttcccttcactagaggca 120 || ||||||||||||| |||||||||||||| ||||| || ||||| ||||||||||| | Sbjct: 61819 caattatgaggggttgcaacaatatgtgctccttttgtatcgttcctttcactagaggta 61760 Query: 121 gggagaggtcacgcccagtatcttctgttgtccgagaagttggtgagctctggtatgctg 180 |||| ||||| || ||||| || || |||||||||||||||| ||||||||| | || | Sbjct: 61759 gggaaaggtcccgtccagtgtcctcaattgtccgagaagttggggagctctggaaagcag 61700 Query: 181 gcgtaaaagaagtaatgcttcttggtcagaatgtaaacagttataatgatacttctgaag 240 |||| || ||||||||||||||||||||||| |||||||||||||| || |||||||||| Sbjct: 61699 gcgtgaaggaagtaatgcttcttggtcagaacgtaaacagttataacgacacttctgaag 61640 Query: 241 ttgaggagttagagcctggtaaaaactggcagctcagcgaaggattttccagcaggtgca 300 ||||||| ||||| ||||||||||||||| ||||||| ||||| ||||| |||| ||||| Sbjct: 61639 ttgaggaattagaacctggtaaaaactgggagctcagtgaagggttttctagcatgtgca 61580 Query: 301 aagtgaagaatacggggttgcgctttgccgatctcctggatcagttgtctctggaatacc 360 | |||||||||| ||||||||| ||||| ||||||||||||||||| ||| ||||||||| Sbjct: 61579 aggtgaagaatatggggttgcgttttgctgatctcctggatcagttatctttggaatacc 61520 Query: 361 ctgagatgcgattcaggtttacctctc 387 |||||||||| |||||||||||||||| Sbjct: 61519 ctgagatgcggttcaggtttacctctc 61493
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 410 bits (207), Expect = e-111 Identities = 342/387 (88%) Strand = Plus / Minus Query: 1 agacttatgctgacatcaccccagttaggatttctgacaattcggttacggcgttcgtgt 60 |||| |||||||||||||||||||||||||| ||||||||||| || || || || || | Sbjct: 21709826 agacgtatgctgacatcaccccagttaggatctctgacaattcagtgaccgcatttgtat 21709767 Query: 61 cagttatgaggggttgtaacaatatgtgctcgttttgcattgttcccttcactagaggca 120 || ||||||||||||| |||||||||||||| ||||| || ||||| ||||||||||| | Sbjct: 21709766 caattatgaggggttgcaacaatatgtgctccttttgtatcgttcctttcactagaggta 21709707 Query: 121 gggagaggtcacgcccagtatcttctgttgtccgagaagttggtgagctctggtatgctg 180 |||| ||||| || ||||| || || |||||||||||||||| ||||||||| | || | Sbjct: 21709706 gggaaaggtcccgtccagtgtcctcaattgtccgagaagttggggagctctggaaagcag 21709647 Query: 181 gcgtaaaagaagtaatgcttcttggtcagaatgtaaacagttataatgatacttctgaag 240 |||| || ||||||||||||||||||||||| |||||||||||||| || |||||||||| Sbjct: 21709646 gcgtgaaggaagtaatgcttcttggtcagaacgtaaacagttataacgacacttctgaag 21709587 Query: 241 ttgaggagttagagcctggtaaaaactggcagctcagcgaaggattttccagcaggtgca 300 ||||||| ||||| ||||||||||||||| ||||||| ||||| ||||| |||| ||||| Sbjct: 21709586 ttgaggaattagaacctggtaaaaactgggagctcagtgaagggttttctagcatgtgca 21709527 Query: 301 aagtgaagaatacggggttgcgctttgccgatctcctggatcagttgtctctggaatacc 360 | |||||||||| ||||||||| ||||| ||||||||||||||||| ||| ||||||||| Sbjct: 21709526 aggtgaagaatatggggttgcgttttgctgatctcctggatcagttatctttggaatacc 21709467 Query: 361 ctgagatgcgattcaggtttacctctc 387 |||||||||| |||||||||||||||| Sbjct: 21709466 ctgagatgcggttcaggtttacctctc 21709440
>dbj|AK066319.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013067A17, full insert sequence Length = 2156 Score = 410 bits (207), Expect = e-111 Identities = 342/387 (88%) Strand = Plus / Plus Query: 1 agacttatgctgacatcaccccagttaggatttctgacaattcggttacggcgttcgtgt 60 |||| |||||||||||||||||||||||||| ||||||||||| || || || || || | Sbjct: 714 agacgtatgctgacatcaccccagttaggatctctgacaattcagtgaccgcatttgtat 773 Query: 61 cagttatgaggggttgtaacaatatgtgctcgttttgcattgttcccttcactagaggca 120 || ||||||||||||| |||||||||||||| ||||| || ||||| ||||||||||| | Sbjct: 774 caattatgaggggttgcaacaatatgtgctccttttgtatcgttcctttcactagaggta 833 Query: 121 gggagaggtcacgcccagtatcttctgttgtccgagaagttggtgagctctggtatgctg 180 |||| ||||| || ||||| || || |||||||||||||||| ||||||||| | || | Sbjct: 834 gggaaaggtcccgtccagtgtcctcaattgtccgagaagttggggagctctggaaagcag 893 Query: 181 gcgtaaaagaagtaatgcttcttggtcagaatgtaaacagttataatgatacttctgaag 240 |||| || ||||||||||||||||||||||| |||||||||||||| || |||||||||| Sbjct: 894 gcgtgaaggaagtaatgcttcttggtcagaacgtaaacagttataacgacacttctgaag 953 Query: 241 ttgaggagttagagcctggtaaaaactggcagctcagcgaaggattttccagcaggtgca 300 ||||||| ||||| ||||||||||||||| ||||||| ||||| ||||| |||| ||||| Sbjct: 954 ttgaggaattagaacctggtaaaaactgggagctcagtgaagggttttctagcatgtgca 1013 Query: 301 aagtgaagaatacggggttgcgctttgccgatctcctggatcagttgtctctggaatacc 360 | |||||||||| ||||||||| ||||| ||||||||||||||||| ||| ||||||||| Sbjct: 1014 aggtgaagaatatggggttgcgttttgctgatctcctggatcagttatctttggaatacc 1073 Query: 361 ctgagatgcgattcaggtttacctctc 387 |||||||||| |||||||||||||||| Sbjct: 1074 ctgagatgcggttcaggtttacctctc 1100
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 410 bits (207), Expect = e-111 Identities = 342/387 (88%) Strand = Plus / Minus Query: 1 agacttatgctgacatcaccccagttaggatttctgacaattcggttacggcgttcgtgt 60 |||| |||||||||||||||||||||||||| ||||||||||| || || || || || | Sbjct: 22020025 agacgtatgctgacatcaccccagttaggatctctgacaattcagtgaccgcatttgtat 22019966 Query: 61 cagttatgaggggttgtaacaatatgtgctcgttttgcattgttcccttcactagaggca 120 || ||||||||||||| |||||||||||||| ||||| || ||||| ||||||||||| | Sbjct: 22019965 caattatgaggggttgcaacaatatgtgctccttttgtatcgttcctttcactagaggta 22019906 Query: 121 gggagaggtcacgcccagtatcttctgttgtccgagaagttggtgagctctggtatgctg 180 |||| ||||| || ||||| || || |||||||||||||||| ||||||||| | || | Sbjct: 22019905 gggaaaggtcccgtccagtgtcctcaattgtccgagaagttggggagctctggaaagcag 22019846 Query: 181 gcgtaaaagaagtaatgcttcttggtcagaatgtaaacagttataatgatacttctgaag 240 |||| || ||||||||||||||||||||||| |||||||||||||| || |||||||||| Sbjct: 22019845 gcgtgaaggaagtaatgcttcttggtcagaacgtaaacagttataacgacacttctgaag 22019786 Query: 241 ttgaggagttagagcctggtaaaaactggcagctcagcgaaggattttccagcaggtgca 300 ||||||| ||||| ||||||||||||||| ||||||| ||||| ||||| |||| ||||| Sbjct: 22019785 ttgaggaattagaacctggtaaaaactgggagctcagtgaagggttttctagcatgtgca 22019726 Query: 301 aagtgaagaatacggggttgcgctttgccgatctcctggatcagttgtctctggaatacc 360 | |||||||||| ||||||||| ||||| ||||||||||||||||| ||| ||||||||| Sbjct: 22019725 aggtgaagaatatggggttgcgttttgctgatctcctggatcagttatctttggaatacc 22019666 Query: 361 ctgagatgcgattcaggtttacctctc 387 |||||||||| |||||||||||||||| Sbjct: 22019665 ctgagatgcggttcaggtttacctctc 22019639
>dbj|AP006712.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT17E09, TM0627, complete sequence Length = 101220 Score = 79.8 bits (40), Expect = 6e-12 Identities = 61/68 (89%) Strand = Plus / Minus Query: 66 atgaggggttgtaacaatatgtgctcgttttgcattgttcccttcactagaggcagggag 125 ||||||||||| |||||||||||||| ||||| ||||| || |||||||||||||| ||| Sbjct: 84981 atgaggggttgcaacaatatgtgctcattttgtattgtacctttcactagaggcagagag 84922 Query: 126 aggtcacg 133 ||||||| Sbjct: 84921 cggtcacg 84914 Score = 48.1 bits (24), Expect = 0.021 Identities = 45/52 (86%) Strand = Plus / Minus Query: 186 aaagaagtaatgcttcttggtcagaatgtaaacagttataatgatacttctg 237 |||||||||| |||||||| ||||| || ||||| ||||||||||| |||| Sbjct: 84861 aaagaagtaacacttcttggccagaacgtgaacagctataatgatacatctg 84810
>dbj|AB120535.2| Nicotiana tabacum NtCAPL mRNA, complete cds Length = 2160 Score = 75.8 bits (38), Expect = 9e-11 Identities = 65/74 (87%) Strand = Plus / Plus Query: 66 atgaggggttgtaacaatatgtgctcgttttgcattgttcccttcactagaggcagggag 125 ||||||||||| || ||||||||||| || ||||||||||||||||||||||| || || Sbjct: 891 atgaggggttgcaataatatgtgctcattctgcattgttcccttcactagagggagagaa 950 Query: 126 aggtcacgcccagt 139 |||| |||||||| Sbjct: 951 cggtctcgcccagt 964 Score = 54.0 bits (27), Expect = 3e-04 Identities = 42/47 (89%) Strand = Plus / Plus Query: 198 cttcttggtcagaatgtaaacagttataatgatacttctgaagttga 244 |||||||| ||||||||||| || ||||||||||| |||| |||||| Sbjct: 1023 cttcttggccagaatgtaaatagctataatgatacatctggagttga 1069
>gb|BT013845.1| Lycopersicon esculentum clone 132802F, mRNA sequence Length = 2181 Score = 67.9 bits (34), Expect = 2e-08 Identities = 64/74 (86%) Strand = Plus / Plus Query: 66 atgaggggttgtaacaatatgtgctcgttttgcattgttcccttcactagaggcagggag 125 ||||||||||| || |||||||| || || ||||||||||||||||||||||| || || Sbjct: 891 atgaggggttgcaataatatgtgttcattctgcattgttcccttcactagagggagagaa 950 Query: 126 aggtcacgcccagt 139 |||| |||||||| Sbjct: 951 cggtctcgcccagt 964 Score = 40.1 bits (20), Expect = 5.2 Identities = 41/48 (85%) Strand = Plus / Plus Query: 197 gcttcttggtcagaatgtaaacagttataatgatacttctgaagttga 244 |||||| || || |||||||| || ||||||||||| |||| |||||| Sbjct: 1022 gcttctcggccaaaatgtaaatagctataatgatacatctggagttga 1069
>gb|AC136451.9| Medicago truncatula clone mth2-17d19, complete sequence Length = 132473 Score = 61.9 bits (31), Expect = 1e-06 Identities = 52/59 (88%) Strand = Plus / Minus Query: 60 tcagttatgaggggttgtaacaatatgtgctcgttttgcattgttcccttcactagagg 118 ||||| ||||||||||| ||||||||||| |||||||| ||||| || || |||||||| Sbjct: 30446 tcagtgatgaggggttgcaacaatatgtgttcgttttgtattgtaccttttactagagg 30388
>gb|AC097500.3| Homo sapiens BAC clone RP11-335G13 from 2, complete sequence Length = 180215 Score = 44.1 bits (22), Expect = 0.33 Identities = 22/22 (100%) Strand = Plus / Minus Query: 191 agtaatgcttcttggtcagaat 212 |||||||||||||||||||||| Sbjct: 167239 agtaatgcttcttggtcagaat 167218
>dbj|AK132982.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched library, clone:4930542I17 product:unclassifiable, full insert sequence Length = 2311 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 219 agttataatgatacttctgaa 239 ||||||||||||||||||||| Sbjct: 2082 agttataatgatacttctgaa 2102
>gb|AC160415.4| Mus musculus 10 BAC RP24-410I24 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 144561 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 195 atgcttcttggtcagaatgta 215 ||||||||||||||||||||| Sbjct: 67431 atgcttcttggtcagaatgta 67451
>gb|AC129935.8| Mus musculus chromosome 15, clone RP23-269P8, complete sequence Length = 183894 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 219 agttataatgatacttctgaa 239 ||||||||||||||||||||| Sbjct: 122075 agttataatgatacttctgaa 122095
>gb|AC106834.9| Mus musculus chromosome 19, clone RP24-132H7, complete sequence Length = 177277 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 219 agttataatgatacttctgaagtt 242 ||||||||||||| |||||||||| Sbjct: 14585 agttataatgataattctgaagtt 14562
>gb|AC162612.2| Mus musculus chromosome 19, clone RP24-334K20, complete sequence Length = 145561 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 219 agttataatgatacttctgaagtt 242 ||||||||||||| |||||||||| Sbjct: 118399 agttataatgataattctgaagtt 118376
>gb|AC110090.6| Mus musculus BAC clone RP23-27L4 from chromosome 1, complete sequence Length = 218518 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 207 cagaatgtaaacagttataa 226 |||||||||||||||||||| Sbjct: 192008 cagaatgtaaacagttataa 192027
>gb|AC015658.11| Mus musculus chromosome 1, clone RP23-130F18, complete sequence Length = 177016 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 207 cagaatgtaaacagttataa 226 |||||||||||||||||||| Sbjct: 170668 cagaatgtaaacagttataa 170649
>gb|AC131565.1| Homo sapiens chromosome 5 clone RP11-1273L8, complete sequence Length = 181283 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 219 agttataatgatacttctga 238 |||||||||||||||||||| Sbjct: 126931 agttataatgatacttctga 126950
>gb|AC114959.2| Homo sapiens chromosome 5 clone RP11-170L13, complete sequence Length = 163805 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 219 agttataatgatacttctga 238 |||||||||||||||||||| Sbjct: 55535 agttataatgatacttctga 55516
>gb|AC011368.5| Homo sapiens chromosome 5 clone CTB-104K23, complete sequence Length = 113582 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 219 agttataatgatacttctga 238 |||||||||||||||||||| Sbjct: 6693 agttataatgatacttctga 6674
>gb|AC022410.5| Homo sapiens chromosome 5 clone CTB-17K15, complete sequence Length = 68234 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 219 agttataatgatacttctga 238 |||||||||||||||||||| Sbjct: 35063 agttataatgatacttctga 35082
>gb|AC140677.1| Homo sapiens chromosome 5 clone CTC-778L3, complete sequence Length = 121010 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 219 agttataatgatacttctga 238 |||||||||||||||||||| Sbjct: 56472 agttataatgatacttctga 56453
>emb|BX119975.7| Zebrafish DNA sequence from clone CH211-200A16 in linkage group 8, complete sequence Length = 154904 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 255 cctggtaaaaactggcagct 274 |||||||||||||||||||| Sbjct: 130888 cctggtaaaaactggcagct 130869
>gb|AC116475.7| Mus musculus chromosome 8, clone RP23-386N2, complete sequence Length = 184741 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 78 aacaatatgtgctcgttttg 97 |||||||||||||||||||| Sbjct: 84163 aacaatatgtgctcgttttg 84182 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,004,384 Number of Sequences: 3902068 Number of extensions: 3004384 Number of successful extensions: 53978 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 23 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 53919 Number of HSP's gapped (non-prelim): 59 length of query: 387 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 365 effective length of database: 17,147,199,772 effective search space: 6258727916780 effective search space used: 6258727916780 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)