>ZN384_HUMAN (Q8TF68) Zinc finger protein 384 (Nuclear matrix transcription|
           factor 4) (Nuclear matrix protein 4) (CAG repeat protein
           1) (CAS-interacting zinc finger protein)
          Length = 576

 Score = 31.6 bits (70), Expect = 1.9
 Identities = 20/47 (42%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
 Frame = -1

Query: 439 PSPPEKLRGREEERMCPRG--EISDDE*GGWELSLEDDDEHCRHGNT 305
           P PP   RGR+++RM   G  E++D     + LS EDDD+H + G T
Sbjct: 188 PKPP---RGRKKKRMLESGLPEMNDP----YVLSPEDDDDHQKDGKT 227

>TBX6_MOUSE (P70327) T-box transcription factor TBX6 (T-box protein 6)|
          Length = 540

 Score = 31.6 bits (70), Expect = 1.9
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = -2

Query: 546 RTSGRSCARK*RIQQKRKLIGPSPVRVGRCPS 451
           R +GR+C R+   + KRKL GP PV    C S
Sbjct: 272 RENGRNCKRERDARVKRKLRGPEPVATEACGS 303

>ZN384_RAT (Q9EQJ4) Zinc finger protein 384 (Nuclear matrix transcription|
           factor 4) (Nuclear matrix protein 4) (Cas-associated
           zinc finger protein)
          Length = 579

 Score = 30.8 bits (68), Expect = 3.2
 Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
 Frame = -1

Query: 442 TPSPPEKLRGREEERMCPRG--EISDDE*GGWELSLEDDDEHCRHGNT 305
           T +PP+  RGR+++RM   G  E++D     + L+  DDD+H + G T
Sbjct: 185 TVAPPKPPRGRKKKRMLESGLPEMNDP----YVLAPGDDDDHQKDGKT 228


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,639,058
Number of Sequences: 219361
Number of extensions: 1811887
Number of successful extensions: 3946
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3830
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3944
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5424720305
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)