Clone Name | basd2i11 |
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Clone Library Name | barley_pub |
No. | Definition | Score (bits) |
E Value |
1 | ZN384_HUMAN (Q8TF68) Zinc finger protein 384 (Nuclear matrix tra... | 32 | 1.9 | 2 | TBX6_MOUSE (P70327) T-box transcription factor TBX6 (T-box prote... | 32 | 1.9 | 3 | ZN384_RAT (Q9EQJ4) Zinc finger protein 384 (Nuclear matrix trans... | 31 | 3.2 |
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>ZN384_HUMAN (Q8TF68) Zinc finger protein 384 (Nuclear matrix transcription| factor 4) (Nuclear matrix protein 4) (CAG repeat protein 1) (CAS-interacting zinc finger protein) Length = 576 Score = 31.6 bits (70), Expect = 1.9 Identities = 20/47 (42%), Positives = 28/47 (59%), Gaps = 2/47 (4%) Frame = -1 Query: 439 PSPPEKLRGREEERMCPRG--EISDDE*GGWELSLEDDDEHCRHGNT 305 P PP RGR+++RM G E++D + LS EDDD+H + G T Sbjct: 188 PKPP---RGRKKKRMLESGLPEMNDP----YVLSPEDDDDHQKDGKT 227
>TBX6_MOUSE (P70327) T-box transcription factor TBX6 (T-box protein 6)| Length = 540 Score = 31.6 bits (70), Expect = 1.9 Identities = 15/32 (46%), Positives = 19/32 (59%) Frame = -2 Query: 546 RTSGRSCARK*RIQQKRKLIGPSPVRVGRCPS 451 R +GR+C R+ + KRKL GP PV C S Sbjct: 272 RENGRNCKRERDARVKRKLRGPEPVATEACGS 303
>ZN384_RAT (Q9EQJ4) Zinc finger protein 384 (Nuclear matrix transcription| factor 4) (Nuclear matrix protein 4) (Cas-associated zinc finger protein) Length = 579 Score = 30.8 bits (68), Expect = 3.2 Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 2/48 (4%) Frame = -1 Query: 442 TPSPPEKLRGREEERMCPRG--EISDDE*GGWELSLEDDDEHCRHGNT 305 T +PP+ RGR+++RM G E++D + L+ DDD+H + G T Sbjct: 185 TVAPPKPPRGRKKKRMLESGLPEMNDP----YVLAPGDDDDHQKDGKT 228 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 88,639,058 Number of Sequences: 219361 Number of extensions: 1811887 Number of successful extensions: 3946 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 3830 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3944 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5424720305 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)