ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd2i07 |
|---|---|
| Clone Library Name | barley_pub |
>HE_PARLI (P22757) Hatching enzyme precursor (EC 3.4.24.12) (HE) (HEZ)| (Envelysin) (Sea-urchin-hatching proteinase) [Contains: Hatching enzyme 18 kDa form] Length = 587 Score = 33.9 bits (76), Expect = 0.12 Identities = 19/37 (51%), Positives = 22/37 (59%), Gaps = 3/37 (8%) Frame = -2 Query: 217 AARTRRPVT-RSTANR--TTNSCPPGRERPPRRACAG 116 A TRR T R+T R TT + P R PPRRAC+G Sbjct: 346 ATTTRRTTTTRATTTRATTTTTTSPSRPSPPRRACSG 382
>YTXM_BACSU (P23974) Putative esterase ytxM (EC 3.1.-.-)| Length = 274 Score = 32.7 bits (73), Expect = 0.26 Identities = 16/43 (37%), Positives = 26/43 (60%) Frame = +1 Query: 16 DIEELXDNLQLGPKFHLVGFSMGGEIMWSCLKYIPHRLSGVAV 144 D+ E+ D L+L K L+G+SMGG + +S P R+S + + Sbjct: 80 DLAEIFDQLKLH-KVKLIGYSMGGRLAYSFAMTYPERVSALVL 121
>HE_HEMPU (P91953) 50 kDa hatching enzyme precursor (EC 3.4.24.12) (HE) (HEZ)| (Envelysin) (Sea-urchin-hatching proteinase) [Contains: 38 kDa hatching enzyme; 32 kDa hatching enzyme non-specific; 15 kDa peptide] Length = 591 Score = 32.0 bits (71), Expect = 0.45 Identities = 14/31 (45%), Positives = 17/31 (54%) Frame = -2 Query: 208 TRRPVTRSTANRTTNSCPPGRERPPRRACAG 116 TRR T+ +TT PP PPR+AC G Sbjct: 355 TRRTTTQLATTQTTTIRPPTYPTPPRQACTG 385
>CO4A2_HUMAN (P08572) Collagen alpha-2(IV) chain precursor| Length = 1712 Score = 31.2 bits (69), Expect = 0.76 Identities = 16/44 (36%), Positives = 20/44 (45%) Frame = +2 Query: 77 PWAAKSCGAASSTSRTGSPGWPFSARWATIGGPVCRRTCHGTPG 208 P +A G+ T G+PG P + WA GP R G PG Sbjct: 1301 PGSAALPGSKGDTGNPGAPGTPGTKGWAGDSGPQGRPGVFGLPG 1344
>ZNFX1_HUMAN (Q9P2E3) NFX1-type zinc finger-containing protein 1| Length = 1918 Score = 31.2 bits (69), Expect = 0.76 Identities = 19/49 (38%), Positives = 23/49 (46%) Frame = +3 Query: 9 RPRHRGARRQPAAGPQIPPRRLLHGRRNHVELPQVHPAQALRGGRSRPG 155 RPR+ + ++PPR RN P PA ALRGG S PG Sbjct: 11 RPRNSHTNHRGPVDGELPPRA-----RNQANNP---PANALRGGASHPG 51
>ZAR1_HUMAN (Q86SH2) Zygote arrest 1 (Oocyte-specific maternal effect factor)| Length = 424 Score = 30.4 bits (67), Expect = 1.3 Identities = 17/46 (36%), Positives = 22/46 (47%) Frame = +3 Query: 21 RGARRQPAAGPQIPPRRLLHGRRNHVELPQVHPAQALRGGRSRPGG 158 R + QPA GP++PPR G + P Q GR+R GG Sbjct: 250 RASWEQPADGPELPPREAQEGEAAPRSALR-SPGQPPSAGRARDGG 294
>ENV_MLVHO (P21436) Env polyprotein precursor [Contains: Coat protein GP76;| Spike protein p15E] Length = 666 Score = 30.0 bits (66), Expect = 1.7 Identities = 15/39 (38%), Positives = 22/39 (56%) Frame = +1 Query: 97 WSCLKYIPHRLSGVAVLGPVGNYWWSGLPSNVSRDAWYE 213 W CL P GVAV+GP N+ + P+N S D+ ++ Sbjct: 335 WLCLVSSPPYYEGVAVVGPYSNH--TTAPANCSADSQHK 371
>ACOC_RALEU (P27747) Dihydrolipoyllysine-residue acetyltransferase component of| acetoin cleaving system (EC 2.3.1.12) (Acetoin dehydrogenase E2 component) (Dihydrolipoamide acetyltransferase component of acetoin cleaving system) (Fast-migrating protein) ( Length = 373 Score = 30.0 bits (66), Expect = 1.7 Identities = 14/33 (42%), Positives = 19/33 (57%) Frame = +1 Query: 61 HLVGFSMGGEIMWSCLKYIPHRLSGVAVLGPVG 159 H+VG SMGG + P R+ VA++ PVG Sbjct: 203 HVVGHSMGGGVAAQLAVDAPQRVLSVALVSPVG 235
>GUX1_NEUCR (P38676) Exoglucanase 1 precursor (EC 3.2.1.91)| (Exocellobiohydrolase 1) (1,4-beta-cellobiohydrolase) Length = 516 Score = 29.6 bits (65), Expect = 2.2 Identities = 17/39 (43%), Positives = 20/39 (51%) Frame = +2 Query: 56 NSTSSASPWAAKSCGAASSTSRTGSPGWPFSARWATIGG 172 N +SSASP S SSTS +P +A WA GG Sbjct: 454 NPSSSASP--TSSTAKPSSTSTASNPSGTGAAHWAQCGG 490
>ADRB3_CAVPO (Q60483) Beta-3 adrenergic receptor (Beta-3 adrenoceptor) (Beta-3| adrenoreceptor) (Fragment) Length = 351 Score = 29.6 bits (65), Expect = 2.2 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 7/47 (14%) Frame = +2 Query: 53 PNSTSSASPWAAKSCGAASSTSRTGSPGWPFSA-------RWATIGG 172 P+ SSA+PW A ++ + +G PG P++A AT+GG Sbjct: 5 PHENSSAAPWPDTPTLAPNTANTSGLPGVPWAAALAGALLALATVGG 51
>STAU_DROME (P25159) Maternal effect protein staufen| Length = 1026 Score = 29.3 bits (64), Expect = 2.9 Identities = 13/25 (52%), Positives = 15/25 (60%) Frame = +3 Query: 30 RRQPAAGPQIPPRRLLHGRRNHVEL 104 ++QP PQ PP R LH R NH L Sbjct: 44 QQQPPPPPQQPPHRDLHARLNHHHL 68
>ARFD_ARATH (Q9ZTX9) Auxin response factor 4| Length = 788 Score = 29.3 bits (64), Expect = 2.9 Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 2/37 (5%) Frame = +2 Query: 74 SPWAAKSC--GAASSTSRTGSPGWPFSARWATIGGPV 178 SP ++ SC G++SS+S TGS +S W GP+ Sbjct: 38 SPSSSSSCSSGSSSSSSSTGSASSIYSELWHACAGPL 74
>RNE_SYNY3 (P72656) Ribonuclease E homolog (EC 3.1.4.-) (RNase E)| Length = 674 Score = 29.3 bits (64), Expect = 2.9 Identities = 12/29 (41%), Positives = 17/29 (58%) Frame = -2 Query: 214 ARTRRPVTRSTANRTTNSCPPGRERPPRR 128 +R++ P T + T + PP RERP RR Sbjct: 499 SRSKGPSPSPTKEKVTGTAPPRRERPSRR 527
>ARHG6_HUMAN (Q15052) Rho guanine nucleotide exchange factor 6 (Rac/Cdc42| guanine nucleotide exchange factor 6) (PAK-interacting exchange factor alpha) (Alpha-Pix) (COOL-2) Length = 776 Score = 28.9 bits (63), Expect = 3.8 Identities = 15/30 (50%), Positives = 17/30 (56%) Frame = +2 Query: 53 PNSTSSASPWAAKSCGAASSTSRTGSPGWP 142 P S SS S ++ SC A SS S TG P P Sbjct: 550 PASCSSLSKTSSSSCSAHSSFSSTGQPRGP 579
>ACOC_PSEPU (Q59695) Dihydrolipoyllysine-residue acetyltransferase component of| acetoin cleaving system (EC 2.3.1.12) (Acetoin dehydrogenase E2 component) (Dihydrolipoamide acetyltransferase component of acetoin cleaving system) Length = 370 Score = 28.9 bits (63), Expect = 3.8 Identities = 14/44 (31%), Positives = 24/44 (54%) Frame = +1 Query: 28 LXDNLQLGPKFHLVGFSMGGEIMWSCLKYIPHRLSGVAVLGPVG 159 L D+L + K HL G SMGG + + P R++ ++++ G Sbjct: 192 LLDHLDIA-KAHLAGHSMGGAVSLNVAGLAPQRVASLSLIASAG 234
>RPB1_MOUSE (P08775) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)| (RPB1) Length = 1970 Score = 28.9 bits (63), Expect = 3.8 Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 1/58 (1%) Frame = +2 Query: 47 WAPNSTSSASPWAAKSCGAASSTSRTGSPGWPFSARWA-TIGGPVCRRTCHGTPGTSS 217 W+P+ S +P AA +A+S + SPG +S W+ T G P G+PG SS Sbjct: 1531 WSPSVGSGMTPGAAGFSPSAASDASGFSPG--YSPAWSPTPGSP-------GSPGPSS 1579
>RPB1_HUMAN (P24928) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)| (RPB1) Length = 1970 Score = 28.9 bits (63), Expect = 3.8 Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 1/58 (1%) Frame = +2 Query: 47 WAPNSTSSASPWAAKSCGAASSTSRTGSPGWPFSARWA-TIGGPVCRRTCHGTPGTSS 217 W+P+ S +P AA +A+S + SPG +S W+ T G P G+PG SS Sbjct: 1531 WSPSVGSGMTPGAAGFSPSAASDASGFSPG--YSPAWSPTPGSP-------GSPGPSS 1579
>MYO15_MOUSE (Q9QZZ4) Myosin-15 (Myosin XV) (Unconventional myosin-15)| Length = 3511 Score = 28.9 bits (63), Expect = 3.8 Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 7/68 (10%) Frame = +3 Query: 24 GARRQPAAGPQIPPRRLLHGRRNHVELPQVHPAQALRGGRSRP-------GGQLLVVRFA 182 G+RR+P P R L G+ H L + P +LR G +P Q L F+ Sbjct: 757 GSRRRPHLPSPQPSLRSLPGQGYHSPLGPLSPQLSLRRGPFQPPFPPPPRRPQSLREAFS 816 Query: 183 VERVTGRL 206 + R +GRL Sbjct: 817 LRRASGRL 824
>COA2_HUMAN (O00763) Acetyl-CoA carboxylase 2 (EC 6.4.1.2) (ACC-beta)| [Includes: Biotin carboxylase (EC 6.3.4.14)] Length = 2483 Score = 28.9 bits (63), Expect = 3.8 Identities = 11/27 (40%), Positives = 15/27 (55%) Frame = -2 Query: 211 RTRRPVTRSTANRTTNSCPPGRERPPR 131 R + P + R NS PP R++PPR Sbjct: 75 RAQPPTKAQRSGRRRNSLPPSRQKPPR 101
>MBD6_HUMAN (Q96DN6) Methyl-CpG-binding domain protein 6 (Methyl-CpG-binding| protein MBD6) Length = 1003 Score = 28.9 bits (63), Expect = 3.8 Identities = 13/37 (35%), Positives = 18/37 (48%) Frame = +3 Query: 42 AAGPQIPPRRLLHGRRNHVELPQVHPAQALRGGRSRP 152 A P +PP L GRR + P + +LR + RP Sbjct: 330 AQHPPLPPPSTLQGRRPRAQAPSASHSSSLRPSQRRP 366
>ESTE_PSEFL (P22862) Arylesterase (EC 3.1.1.2) (Aryl-ester hydrolase) (PFE)| Length = 271 Score = 28.5 bits (62), Expect = 5.0 Identities = 19/52 (36%), Positives = 32/52 (61%), Gaps = 1/52 (1%) Frame = +1 Query: 4 SIALDIEELXDNLQLGPKFHLVGFSM-GGEIMWSCLKYIPHRLSGVAVLGPV 156 + A DI +L ++L L + LVGFSM GG++ ++ R++G+ +LG V Sbjct: 71 TFADDIAQLIEHLDL-KEVTLVGFSMGGGDVARYIARHGSARVAGLVLLGAV 121
>NOMO3_HUMAN (P69849) Nodal modulator 3 precursor (pM5 protein 3)| Length = 1222 Score = 28.5 bits (62), Expect = 5.0 Identities = 11/28 (39%), Positives = 19/28 (67%) Frame = +1 Query: 13 LDIEELXDNLQLGPKFHLVGFSMGGEIM 96 LD D+L++ P FH++GFS+ G ++ Sbjct: 309 LDFTVEHDSLKIEPVFHVMGFSVTGRVL 336
>NOMO2_HUMAN (Q5JPE7) Nodal modulator 2 precursor (pM5 protein 2)| Length = 1267 Score = 28.5 bits (62), Expect = 5.0 Identities = 11/28 (39%), Positives = 19/28 (67%) Frame = +1 Query: 13 LDIEELXDNLQLGPKFHLVGFSMGGEIM 96 LD D+L++ P FH++GFS+ G ++ Sbjct: 309 LDFTVEHDSLKIEPVFHVMGFSVTGRVL 336
>NOMO1_HUMAN (Q15155) Nodal modulator 1 precursor (pM5)| Length = 1222 Score = 28.5 bits (62), Expect = 5.0 Identities = 11/28 (39%), Positives = 19/28 (67%) Frame = +1 Query: 13 LDIEELXDNLQLGPKFHLVGFSMGGEIM 96 LD D+L++ P FH++GFS+ G ++ Sbjct: 309 LDFTVEHDSLKIEPVFHVMGFSVTGRVL 336
>SRR1L_HUMAN (Q9UH36) SRR1-like protein| Length = 339 Score = 28.5 bits (62), Expect = 5.0 Identities = 17/47 (36%), Positives = 20/47 (42%) Frame = -2 Query: 205 RRPVTRSTANRTTNSCPPGRERPPRRACAGCT*GSST*FRRPWRSRR 65 RRP R A R + P GRE PR A S RR W + + Sbjct: 25 RRPRRREAAPRGREAAPRGREAAPRGPEAEFESDSGVVLRRIWEAEK 71
>HXB3_CHICK (P23682) Homeobox protein Hox-B3 (Chox-2.7)| Length = 399 Score = 28.1 bits (61), Expect = 6.5 Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 2/56 (3%) Frame = +3 Query: 6 HRPRHRGARRQPAAGPQIPPRRLLHGRRNHVELPQVHPAQA--LRGGRSRPGGQLL 167 H P H+ A + PQ+PP + H + PAQ L GG++ PGG L Sbjct: 342 HLPHHQAANMDYSGPPQMPPSQHHGPCEPHPTYTDLWPAQPTHLLGGQN-PGGPKL 396
>COX9_KLULA (Q6CWK9) Cytochrome c oxidase subunit 7A precursor (EC 1.9.3.1)| (Cytochrome c oxidase polypeptide VIIA) Length = 59 Score = 28.1 bits (61), Expect = 6.5 Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 2/28 (7%) Frame = +1 Query: 133 GVAVLGPVGNYWWSGLPSNV--SRDAWY 210 G A+ G + +YWW G N+ R+A+Y Sbjct: 21 GFAIGGAMASYWWWGFHKNIINKREAYY 48
>TDP1_CAEEL (Q22703) Transcription factor dpl-1| Length = 598 Score = 28.1 bits (61), Expect = 6.5 Identities = 15/57 (26%), Positives = 31/57 (54%) Frame = +3 Query: 6 HRPRHRGARRQPAAGPQIPPRRLLHGRRNHVELPQVHPAQALRGGRSRPGGQLLVVR 176 H+P H+ ++ PQ P + G+ + V+ V+PA ++ G + +PG +++ R Sbjct: 467 HQPMHQPVGQRYRVRPQQPQMSHM-GQPHQVQQRVVYPAGSISGHQLQPGQRIVTQR 522
>KCNG2_RAT (Q9QYU3) Potassium voltage-gated channel subfamily G member 2| (Voltage-gated potassium channel subunit Kv6.2) (Cardiac potassium channel subunit) Length = 480 Score = 28.1 bits (61), Expect = 6.5 Identities = 17/42 (40%), Positives = 21/42 (50%) Frame = +3 Query: 93 HVELPQVHPAQALRGGRSRPGGQLLVVRFAVERVTGRLVRAA 218 H E+P P A+RGGR GG+ R + V G VR A Sbjct: 7 HPEVPGAEPGSAVRGGR---GGRGARARHVIINVGGCRVRLA 45
>E2F4_HUMAN (Q16254) Transcription factor E2F4 (E2F-4)| Length = 413 Score = 28.1 bits (61), Expect = 6.5 Identities = 18/61 (29%), Positives = 25/61 (40%), Gaps = 5/61 (8%) Frame = +2 Query: 50 APNSTSSASPWAAKSCGAASSTSRTGSP-----GWPFSARWATIGGPVCRRTCHGTPGTS 214 +P++ S+ P + + SR SP P SA + GP T G PGT Sbjct: 218 SPSAVSTPPPLPKPALAQSQEASRPNSPQLTPTAVPGSAEVQGMAGPAAEITVSGGPGTD 277 Query: 215 S 217 S Sbjct: 278 S 278
>COAA1_BOVIN (P23206) Collagen alpha-1(X) chain precursor| Length = 674 Score = 28.1 bits (61), Expect = 6.5 Identities = 14/33 (42%), Positives = 17/33 (51%) Frame = -3 Query: 174 GPPIVAHRAENGHPGEPVRDVLEAAPHDFAAHG 76 GPP V R ENG PG+P + P + A G Sbjct: 215 GPPGVGKRGENGLPGQPGLKGDQGVPGERGAAG 247
>COAA1_HUMAN (Q03692) Collagen alpha-1(X) chain precursor| Length = 680 Score = 28.1 bits (61), Expect = 6.5 Identities = 11/18 (61%), Positives = 13/18 (72%) Frame = -3 Query: 177 TGPPIVAHRAENGHPGEP 124 +GPP V R ENG PG+P Sbjct: 214 SGPPGVGKRGENGVPGQP 231
>VIRBA_AGRTU (P09783) Protein virB10| Length = 376 Score = 27.7 bits (60), Expect = 8.4 Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 6/45 (13%) Frame = +3 Query: 36 QPAAGPQIP------PRRLLHGRRNHVELPQVHPAQALRGGRSRP 152 Q A P +P P R+ HGR+ H L H A A++G S P Sbjct: 88 QEAVQPTVPQPPRGEPERMSHGRKKHRFL---HIAVAIKGSASAP 129
>BPHD_BURCE (P47229) 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase (EC| 3.7.1.-) Length = 286 Score = 27.7 bits (60), Expect = 8.4 Identities = 16/47 (34%), Positives = 25/47 (53%) Frame = +1 Query: 19 IEELXDNLQLGPKFHLVGFSMGGEIMWSCLKYIPHRLSGVAVLGPVG 159 ++ L D L + + HLVG SMGG + P R+ + ++GP G Sbjct: 94 VKGLMDALDID-RAHLVGNSMGGATALNFALEYPDRIGKLILMGPGG 139
>STK19_HUMAN (P49842) Serine/threonine-protein kinase 19 (EC 2.7.11.1) (Protein| RP1) (Protein G11) Length = 368 Score = 27.7 bits (60), Expect = 8.4 Identities = 15/44 (34%), Positives = 18/44 (40%) Frame = -2 Query: 193 TRSTANRTTNSCPPGRERPPRRACAGCT*GSST*FRRPWRSRRG 62 T+ PP R+R P RAC +R P R RRG Sbjct: 31 TKEVDTNVATGAPPRRQRVPGRACP---------WREPIRGRRG 65
>NEF_HV1MN (P05856) Nef protein (Negative factor) (F-protein) (3'ORF)| [Contains: C-terminal core protein] Length = 207 Score = 27.7 bits (60), Expect = 8.4 Identities = 14/37 (37%), Positives = 16/37 (43%) Frame = -3 Query: 186 RRQTGPPIVAHRAENGHPGEPVRDVLEAAPHDFAAHG 76 +R TG P V R P E D + AA D HG Sbjct: 6 KRVTGWPTVRERMRRAEPAELAADGVGAASRDLEKHG 42
>FOXF2_HUMAN (Q12947) Forkhead box protein F2 (Forkhead-related protein FKHL6)| (Forkhead-related transcription factor 2) (FREAC-2) (Forkhead-related activator 2) Length = 444 Score = 27.7 bits (60), Expect = 8.4 Identities = 12/27 (44%), Positives = 20/27 (74%) Frame = +2 Query: 50 APNSTSSASPWAAKSCGAASSTSRTGS 130 AP +TSS+S ++ SC ++SS+S + S Sbjct: 41 APETTSSSSSSSSASCASSSSSSNSAS 67
>BPHD_PSES1 (P17548) 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase (EC| 3.7.1.-) Length = 277 Score = 27.7 bits (60), Expect = 8.4 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 2/45 (4%) Frame = +1 Query: 55 KFHLVGFSMGGEIMWSCLKYIPHRLSGVAVLGP--VGNYWWSGLP 183 K HLVG SMGG + P R + ++GP +GN ++ +P Sbjct: 105 KAHLVGNSMGGAGALNFALEYPERTGKLILMGPGGLGNSLFTAMP 149 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 36,823,048 Number of Sequences: 219361 Number of extensions: 764039 Number of successful extensions: 3338 Number of sequences better than 10.0: 38 Number of HSP's better than 10.0 without gapping: 3152 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3338 length of database: 80,573,946 effective HSP length: 48 effective length of database: 70,044,618 effective search space used: 1681070832 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
