Clone Name | basd2i07 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_472398.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1035 Score = 236 bits (119), Expect = 2e-59 Identities = 193/218 (88%) Strand = Plus / Plus Query: 1 aagagcatcgccctcgacatcgaggagctcgncgacaacctgcagctgggccccaaattc 60 |||||||| ||||| ||| |||||||||||| ||||||||||||||||||||||| ||| Sbjct: 340 aagagcatagccctggacgtcgaggagctcgcggacaacctgcagctgggccccaagttc 399 Query: 61 cacctcgtcggcttctccatgggcggcgaaatcatgtggagctgcctcaagtacatcccg 120 ||||| | ||||||||||||||||| || ||||||||||||||||||||| ||||| | Sbjct: 400 tacctcatgggcttctccatgggcggagagatcatgtggagctgcctcaagcacatctca 459 Query: 121 cacaggctctccggggtggccgttctcggcccggtgggcaactattggtggtccggtttg 180 ||||||||| ||||||||||| |||| ||||| ||||||||||| ||||||||||| ||| Sbjct: 460 cacaggctcgccggggtggccattcttggccccgtgggcaactactggtggtccggcttg 519 Query: 181 ccgtcgaacgtgtcacgggacgcctggtacgagcagct 218 |||||||||||||| || |||||||| || ||||||| Sbjct: 520 ccgtcgaacgtgtcgtggcacgcctggaaccagcagct 557
>dbj|AK102032.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033081A11, full insert sequence Length = 1293 Score = 236 bits (119), Expect = 2e-59 Identities = 193/218 (88%) Strand = Plus / Plus Query: 1 aagagcatcgccctcgacatcgaggagctcgncgacaacctgcagctgggccccaaattc 60 |||||||| ||||| ||| |||||||||||| ||||||||||||||||||||||| ||| Sbjct: 381 aagagcatagccctggacgtcgaggagctcgcggacaacctgcagctgggccccaagttc 440 Query: 61 cacctcgtcggcttctccatgggcggcgaaatcatgtggagctgcctcaagtacatcccg 120 ||||| | ||||||||||||||||| || ||||||||||||||||||||| ||||| | Sbjct: 441 tacctcatgggcttctccatgggcggagagatcatgtggagctgcctcaagcacatctca 500 Query: 121 cacaggctctccggggtggccgttctcggcccggtgggcaactattggtggtccggtttg 180 ||||||||| ||||||||||| |||| ||||| ||||||||||| ||||||||||| ||| Sbjct: 501 cacaggctcgccggggtggccattcttggccccgtgggcaactactggtggtccggcttg 560 Query: 181 ccgtcgaacgtgtcacgggacgcctggtacgagcagct 218 |||||||||||||| || |||||||| || ||||||| Sbjct: 561 ccgtcgaacgtgtcgtggcacgcctggaaccagcagct 598
>emb|AL662947.3|OSJN00148 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0073L04, complete sequence Length = 143301 Score = 165 bits (83), Expect = 7e-38 Identities = 103/110 (93%) Strand = Plus / Plus Query: 1 aagagcatcgccctcgacatcgaggagctcgncgacaacctgcagctgggccccaaattc 60 |||||||||||||| |||||||||||||||| |||||||||||||||||||||||| ||| Sbjct: 91872 aagagcatcgccctggacatcgaggagctcgccgacaacctgcagctgggccccaagttc 91931 Query: 61 cacctcgtcggcttctccatgggcggcgaaatcatgtggagctgcctcaa 110 ||||| | |||||||||||||||||||| |||||||||||||||||||| Sbjct: 91932 tacctcatgggcttctccatgggcggcgagatcatgtggagctgcctcaa 91981 Score = 141 bits (71), Expect = 1e-30 Identities = 112/126 (88%) Strand = Plus / Plus Query: 1 aagagcatcgccctcgacatcgaggagctcgncgacaacctgcagctgggccccaaattc 60 |||||||| ||||| ||| |||||||||||| ||||||||||||||||||||||| ||| Sbjct: 83460 aagagcatagccctggacgtcgaggagctcgcggacaacctgcagctgggccccaagttc 83519 Query: 61 cacctcgtcggcttctccatgggcggcgaaatcatgtggagctgcctcaagtacatcccg 120 ||||| | ||||||||||||||||| || ||||||||||||||||||||| ||||| | Sbjct: 83520 tacctcatgggcttctccatgggcggagagatcatgtggagctgcctcaagcacatctca 83579 Query: 121 cacagg 126 |||||| Sbjct: 83580 cacagg 83585 Score = 103 bits (52), Expect = 2e-19 Identities = 85/96 (88%) Strand = Plus / Plus Query: 123 caggctctccggggtggccgttctcggcccggtgggcaactattggtggtccggtttgcc 182 ||||||| ||||||||||| |||| ||||| ||||||||||| ||||||||||| ||||| Sbjct: 83677 caggctcgccggggtggccattcttggccccgtgggcaactactggtggtccggcttgcc 83736 Query: 183 gtcgaacgtgtcacgggacgcctggtacgagcagct 218 |||||||||||| || |||||||| || ||||||| Sbjct: 83737 gtcgaacgtgtcgtggcacgcctggaaccagcagct 83772 Score = 87.7 bits (44), Expect = 1e-14 Identities = 65/72 (90%) Strand = Plus / Plus Query: 123 caggctctccggggtggccgttctcggcccggtgggcaactattggtggtccggtttgcc 182 ||||||| ||||||||||| |||| | ||| ||||||||||||||||||||||| ||||| Sbjct: 92110 caggctcgccggggtggccattcttgcccccgtgggcaactattggtggtccggcttgcc 92169 Query: 183 gtcgaacgtgtc 194 ||||||| |||| Sbjct: 92170 gtcgaacatgtc 92181
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 165 bits (83), Expect = 7e-38 Identities = 103/110 (93%) Strand = Plus / Plus Query: 1 aagagcatcgccctcgacatcgaggagctcgncgacaacctgcagctgggccccaaattc 60 |||||||||||||| |||||||||||||||| |||||||||||||||||||||||| ||| Sbjct: 20361239 aagagcatcgccctggacatcgaggagctcgccgacaacctgcagctgggccccaagttc 20361298 Query: 61 cacctcgtcggcttctccatgggcggcgaaatcatgtggagctgcctcaa 110 ||||| | |||||||||||||||||||| |||||||||||||||||||| Sbjct: 20361299 tacctcatgggcttctccatgggcggcgagatcatgtggagctgcctcaa 20361348 Score = 141 bits (71), Expect = 1e-30 Identities = 112/126 (88%) Strand = Plus / Plus Query: 1 aagagcatcgccctcgacatcgaggagctcgncgacaacctgcagctgggccccaaattc 60 |||||||| ||||| ||| |||||||||||| ||||||||||||||||||||||| ||| Sbjct: 20352827 aagagcatagccctggacgtcgaggagctcgcggacaacctgcagctgggccccaagttc 20352886 Query: 61 cacctcgtcggcttctccatgggcggcgaaatcatgtggagctgcctcaagtacatcccg 120 ||||| | ||||||||||||||||| || ||||||||||||||||||||| ||||| | Sbjct: 20352887 tacctcatgggcttctccatgggcggagagatcatgtggagctgcctcaagcacatctca 20352946 Query: 121 cacagg 126 |||||| Sbjct: 20352947 cacagg 20352952 Score = 103 bits (52), Expect = 2e-19 Identities = 85/96 (88%) Strand = Plus / Plus Query: 123 caggctctccggggtggccgttctcggcccggtgggcaactattggtggtccggtttgcc 182 ||||||| ||||||||||| |||| ||||| ||||||||||| ||||||||||| ||||| Sbjct: 20353044 caggctcgccggggtggccattcttggccccgtgggcaactactggtggtccggcttgcc 20353103 Query: 183 gtcgaacgtgtcacgggacgcctggtacgagcagct 218 |||||||||||| || |||||||| || ||||||| Sbjct: 20353104 gtcgaacgtgtcgtggcacgcctggaaccagcagct 20353139 Score = 87.7 bits (44), Expect = 1e-14 Identities = 65/72 (90%) Strand = Plus / Plus Query: 123 caggctctccggggtggccgttctcggcccggtgggcaactattggtggtccggtttgcc 182 ||||||| ||||||||||| |||| | ||| ||||||||||||||||||||||| ||||| Sbjct: 20361477 caggctcgccggggtggccattcttgcccccgtgggcaactattggtggtccggcttgcc 20361536 Query: 183 gtcgaacgtgtc 194 ||||||| |||| Sbjct: 20361537 gtcgaacatgtc 20361548
>dbj|AK119210.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-041-E04, full insert sequence Length = 1405 Score = 139 bits (70), Expect = 4e-30 Identities = 153/181 (84%) Strand = Plus / Plus Query: 14 tcgacatcgaggagctcgncgacaacctgcagctgggccccaaattccacctcgtcggct 73 |||||||||| | ||||| |||| |||||||| |||||||| ||| ||||| |||||| Sbjct: 563 tcgacatcgaagggctcgccgacgggctgcagctcggccccaagttctacctcatcggct 622 Query: 74 tctccatgggcggcgaaatcatgtggagctgcctcaagtacatcccgcacaggctctccg 133 |||||||||||| ||||||||||||||||||||||| ||||||| ||||||||| | | Sbjct: 623 actccatgggcggggaaatcatgtggagctgcctcaaaaacatccctcacaggctcgcgg 682 Query: 134 gggtggccgttctcggcccggtgggcaactattggtggtccggtttgccgtcgaacgtgt 193 ||||| | | || || |||||||| ||||| |||||||| |||| ||||||||||||| Sbjct: 683 gggtgtcaatcctggggccggtggggaactactggtggtcgggttacccgtcgaacgtgt 742 Query: 194 c 194 | Sbjct: 743 c 743
>dbj|AK104452.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-212-H03, full insert sequence Length = 1399 Score = 139 bits (70), Expect = 4e-30 Identities = 153/181 (84%) Strand = Plus / Plus Query: 14 tcgacatcgaggagctcgncgacaacctgcagctgggccccaaattccacctcgtcggct 73 |||||||||| | ||||| |||| |||||||| |||||||| ||| ||||| |||||| Sbjct: 563 tcgacatcgaagggctcgccgacgggctgcagctcggccccaagttctacctcatcggct 622 Query: 74 tctccatgggcggcgaaatcatgtggagctgcctcaagtacatcccgcacaggctctccg 133 |||||||||||| ||||||||||||||||||||||| ||||||| ||||||||| | | Sbjct: 623 actccatgggcggggaaatcatgtggagctgcctcaaaaacatccctcacaggctcgcgg 682 Query: 134 gggtggccgttctcggcccggtgggcaactattggtggtccggtttgccgtcgaacgtgt 193 ||||| | | || || |||||||| ||||| |||||||| |||| ||||||||||||| Sbjct: 683 gggtgtcaatcctggggccggtggggaactactggtggtcgggttacccgtcgaacgtgt 742 Query: 194 c 194 | Sbjct: 743 c 743
>dbj|AK099017.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013119A16, full insert sequence Length = 1391 Score = 139 bits (70), Expect = 4e-30 Identities = 153/181 (84%) Strand = Plus / Plus Query: 14 tcgacatcgaggagctcgncgacaacctgcagctgggccccaaattccacctcgtcggct 73 |||||||||| | ||||| |||| |||||||| |||||||| ||| ||||| |||||| Sbjct: 564 tcgacatcgaagggctcgccgacgggctgcagctcggccccaagttctacctcatcggct 623 Query: 74 tctccatgggcggcgaaatcatgtggagctgcctcaagtacatcccgcacaggctctccg 133 |||||||||||| ||||||||||||||||||||||| ||||||| ||||||||| | | Sbjct: 624 actccatgggcggggaaatcatgtggagctgcctcaaaaacatccctcacaggctcgcgg 683 Query: 134 gggtggccgttctcggcccggtgggcaactattggtggtccggtttgccgtcgaacgtgt 193 ||||| | | || || |||||||| ||||| |||||||| |||| ||||||||||||| Sbjct: 684 gggtgtcaatcctggggccggtggggaactactggtggtcgggttacccgtcgaacgtgt 743 Query: 194 c 194 | Sbjct: 744 c 744
>dbj|AK061527.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-310-D10, full insert sequence Length = 1409 Score = 139 bits (70), Expect = 4e-30 Identities = 153/181 (84%) Strand = Plus / Plus Query: 14 tcgacatcgaggagctcgncgacaacctgcagctgggccccaaattccacctcgtcggct 73 |||||||||| | ||||| |||| |||||||| |||||||| ||| ||||| |||||| Sbjct: 563 tcgacatcgaagggctcgccgacgggctgcagctcggccccaagttctacctcatcggct 622 Query: 74 tctccatgggcggcgaaatcatgtggagctgcctcaagtacatcccgcacaggctctccg 133 |||||||||||| ||||||||||||||||||||||| ||||||| ||||||||| | | Sbjct: 623 actccatgggcggggaaatcatgtggagctgcctcaaaaacatccctcacaggctcgcgg 682 Query: 134 gggtggccgttctcggcccggtgggcaactattggtggtccggtttgccgtcgaacgtgt 193 ||||| | | || || |||||||| ||||| |||||||| |||| ||||||||||||| Sbjct: 683 gggtgtcaatcctggggccggtggggaactactggtggtcgggttacccgtcgaacgtgt 742 Query: 194 c 194 | Sbjct: 743 c 743
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 107 bits (54), Expect = 1e-20 Identities = 98/113 (86%) Strand = Plus / Plus Query: 14 tcgacatcgaggagctcgncgacaacctgcagctgggccccaaattccacctcgtcggct 73 |||||||||| | ||||| |||| |||||||| |||||||| ||| ||||| |||||| Sbjct: 19613844 tcgacatcgaagggctcgccgacgggctgcagctcggccccaagttctacctcatcggct 19613903 Query: 74 tctccatgggcggcgaaatcatgtggagctgcctcaagtacatcccgcacagg 126 |||||||||||| ||||||||||||||||||||||| ||||||| |||||| Sbjct: 19613904 actccatgggcggggaaatcatgtggagctgcctcaaaaacatccctcacagg 19613956 Score = 48.1 bits (24), Expect = 0.011 Identities = 39/44 (88%) Strand = Plus / Plus Query: 151 ccggtgggcaactattggtggtccggtttgccgtcgaacgtgtc 194 |||||||| ||||| |||||||| |||| |||||||||||||| Sbjct: 19614084 ccggtggggaactactggtggtcgggttacccgtcgaacgtgtc 19614127 Score = 40.1 bits (20), Expect = 2.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 40 ctgcagctgggccccaaatt 59 |||||||||||||||||||| Sbjct: 33884229 ctgcagctgggccccaaatt 33884248
>dbj|AP005110.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0605D08 Length = 144340 Score = 107 bits (54), Expect = 1e-20 Identities = 98/113 (86%) Strand = Plus / Plus Query: 14 tcgacatcgaggagctcgncgacaacctgcagctgggccccaaattccacctcgtcggct 73 |||||||||| | ||||| |||| |||||||| |||||||| ||| ||||| |||||| Sbjct: 80130 tcgacatcgaagggctcgccgacgggctgcagctcggccccaagttctacctcatcggct 80189 Query: 74 tctccatgggcggcgaaatcatgtggagctgcctcaagtacatcccgcacagg 126 |||||||||||| ||||||||||||||||||||||| ||||||| |||||| Sbjct: 80190 actccatgggcggggaaatcatgtggagctgcctcaaaaacatccctcacagg 80242 Score = 48.1 bits (24), Expect = 0.011 Identities = 39/44 (88%) Strand = Plus / Plus Query: 151 ccggtgggcaactattggtggtccggtttgccgtcgaacgtgtc 194 |||||||| ||||| |||||||| |||| |||||||||||||| Sbjct: 80370 ccggtggggaactactggtggtcgggttacccgtcgaacgtgtc 80413
>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome Length = 6438405 Score = 44.1 bits (22), Expect = 0.18 Identities = 22/22 (100%) Strand = Plus / Plus Query: 67 gtcggcttctccatgggcggcg 88 |||||||||||||||||||||| Sbjct: 3747350 gtcggcttctccatgggcggcg 3747371
>emb|AL939119.1|SCO939119 Streptomyces coelicolor A3(2) complete genome; segment 16/29 Length = 299050 Score = 44.1 bits (22), Expect = 0.18 Identities = 22/22 (100%) Strand = Plus / Plus Query: 66 cgtcggcttctccatgggcggc 87 |||||||||||||||||||||| Sbjct: 47150 cgtcggcttctccatgggcggc 47171
>ref|NM_190689.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1044 Score = 42.1 bits (21), Expect = 0.70 Identities = 30/33 (90%) Strand = Plus / Plus Query: 96 gtggagctgcctcaagtacatcccgcacaggct 128 ||||||||||||||| |||||||| ||||||| Sbjct: 441 gtggagctgcctcaactacatcccttacaggct 473 Score = 42.1 bits (21), Expect = 0.70 Identities = 26/28 (92%) Strand = Plus / Plus Query: 20 tcgaggagctcgncgacaacctgcagct 47 |||||||||||| |||||| |||||||| Sbjct: 365 tcgaggagctcgccgacaagctgcagct 392
>gb|CP000088.1| Thermobifida fusca YX, complete genome Length = 3642249 Score = 42.1 bits (21), Expect = 0.70 Identities = 21/21 (100%) Strand = Plus / Minus Query: 63 cctcgtcggcttctccatggg 83 ||||||||||||||||||||| Sbjct: 1923575 cctcgtcggcttctccatggg 1923555
>dbj|AK061887.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-041-F10, full insert sequence Length = 1519 Score = 42.1 bits (21), Expect = 0.70 Identities = 30/33 (90%) Strand = Plus / Plus Query: 96 gtggagctgcctcaagtacatcccgcacaggct 128 ||||||||||||||| |||||||| ||||||| Sbjct: 686 gtggagctgcctcaactacatcccttacaggct 718 Score = 42.1 bits (21), Expect = 0.70 Identities = 26/28 (92%) Strand = Plus / Plus Query: 20 tcgaggagctcgncgacaacctgcagct 47 |||||||||||| |||||| |||||||| Sbjct: 610 tcgaggagctcgccgacaagctgcagct 637
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 42.1 bits (21), Expect = 0.70 Identities = 26/28 (92%) Strand = Plus / Plus Query: 20 tcgaggagctcgncgacaacctgcagct 47 |||||||||||| |||||| |||||||| Sbjct: 37149498 tcgaggagctcgccgacaagctgcagct 37149525 Score = 40.1 bits (20), Expect = 2.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 96 gtggagctgcctcaagtacatccc 119 ||||||||||||||| |||||||| Sbjct: 37149574 gtggagctgcctcaactacatccc 37149597
>dbj|AP003794.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0489B03 Length = 150381 Score = 42.1 bits (21), Expect = 0.70 Identities = 26/28 (92%) Strand = Plus / Plus Query: 20 tcgaggagctcgncgacaacctgcagct 47 |||||||||||| |||||| |||||||| Sbjct: 24154 tcgaggagctcgccgacaagctgcagct 24181 Score = 40.1 bits (20), Expect = 2.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 96 gtggagctgcctcaagtacatccc 119 ||||||||||||||| |||||||| Sbjct: 24230 gtggagctgcctcaactacatccc 24253
>dbj|AP003289.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0683F02 Length = 153388 Score = 42.1 bits (21), Expect = 0.70 Identities = 26/28 (92%) Strand = Plus / Plus Query: 20 tcgaggagctcgncgacaacctgcagct 47 |||||||||||| |||||| |||||||| Sbjct: 150639 tcgaggagctcgccgacaagctgcagct 150666 Score = 40.1 bits (20), Expect = 2.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 96 gtggagctgcctcaagtacatccc 119 ||||||||||||||| |||||||| Sbjct: 150715 gtggagctgcctcaactacatccc 150738
>dbj|AK099121.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023038D03, full insert sequence Length = 1567 Score = 42.1 bits (21), Expect = 0.70 Identities = 30/33 (90%) Strand = Plus / Plus Query: 96 gtggagctgcctcaagtacatcccgcacaggct 128 ||||||||||||||| |||||||| ||||||| Sbjct: 662 gtggagctgcctcaactacatcccttacaggct 694 Score = 42.1 bits (21), Expect = 0.70 Identities = 26/28 (92%) Strand = Plus / Plus Query: 20 tcgaggagctcgncgacaacctgcagct 47 |||||||||||| |||||| |||||||| Sbjct: 586 tcgaggagctcgccgacaagctgcagct 613
>dbj|AK072912.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023147H18, full insert sequence Length = 1358 Score = 42.1 bits (21), Expect = 0.70 Identities = 30/33 (90%) Strand = Plus / Plus Query: 96 gtggagctgcctcaagtacatcccgcacaggct 128 ||||||||||||||| |||||||| ||||||| Sbjct: 550 gtggagctgcctcaactacatcccttacaggct 582 Score = 42.1 bits (21), Expect = 0.70 Identities = 26/28 (92%) Strand = Plus / Plus Query: 20 tcgaggagctcgncgacaacctgcagct 47 |||||||||||| |||||| |||||||| Sbjct: 474 tcgaggagctcgccgacaagctgcagct 501
>gb|BC105810.1| Homo sapiens ribosomal protein S15, mRNA (cDNA clone MGC:111130 IMAGE:6744553), complete cds Length = 537 Score = 40.1 bits (20), Expect = 2.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 69 cggcttctccatgggcggcg 88 |||||||||||||||||||| Sbjct: 259 cggcttctccatgggcggcg 240
>ref|XM_512237.1| PREDICTED: Pan troglodytes similar to ribosomal protein S15; rat insulinoma gene (LOC455550), mRNA Length = 550 Score = 40.1 bits (20), Expect = 2.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 69 cggcttctccatgggcggcg 88 |||||||||||||||||||| Sbjct: 299 cggcttctccatgggcggcg 280
>ref|XM_515900.1| PREDICTED: Pan troglodytes similar to ribosomal protein S15; rat insulinoma gene (LOC459733), mRNA Length = 504 Score = 40.1 bits (20), Expect = 2.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 69 cggcttctccatgggcggcg 88 |||||||||||||||||||| Sbjct: 226 cggcttctccatgggcggcg 207
>ref|XM_514280.1| PREDICTED: Pan troglodytes similar to RIKEN cDNA 1810063B05 (LOC457829), mRNA Length = 1989 Score = 40.1 bits (20), Expect = 2.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 69 cggcttctccatgggcggcg 88 |||||||||||||||||||| Sbjct: 883 cggcttctccatgggcggcg 902
>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome Length = 3188609 Score = 40.1 bits (20), Expect = 2.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 5 gcatcgccctcgacatcgag 24 |||||||||||||||||||| Sbjct: 2898940 gcatcgccctcgacatcgag 2898959
>gb|BC080543.1| Homo sapiens cDNA clone IMAGE:5556479, with apparent retained intron Length = 1629 Score = 40.1 bits (20), Expect = 2.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 69 cggcttctccatgggcggcg 88 |||||||||||||||||||| Sbjct: 1361 cggcttctccatgggcggcg 1342
>gb|BC064908.1| Homo sapiens ribosomal protein S15, mRNA (cDNA clone MGC:70657 IMAGE:6053159), complete cds Length = 539 Score = 40.1 bits (20), Expect = 2.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 69 cggcttctccatgggcggcg 88 |||||||||||||||||||| Sbjct: 225 cggcttctccatgggcggcg 206
>ref|NM_001018.3| Homo sapiens ribosomal protein S15 (RPS15), mRNA Length = 531 Score = 40.1 bits (20), Expect = 2.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 69 cggcttctccatgggcggcg 88 |||||||||||||||||||| Sbjct: 281 cggcttctccatgggcggcg 262
>gb|CP000323.1| Psychrobacter cryohalolentis K5, complete genome Length = 3059876 Score = 40.1 bits (20), Expect = 2.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 65 tcgtcggcttctccatgggcggcg 88 ||||||||||||| |||||||||| Sbjct: 2784848 tcgtcggcttctctatgggcggcg 2784871
>emb|AL355472.19| Human DNA sequence from clone RP5-827C21 on chromosome 1 Contains a ribosomal protein S15 (RPS15) pseudogene, three novel genes (LOC388753), the 3' end of the TARBP1 gene for TAR (HIV) RNA binding protein 1 and a CpG island, complete sequence Length = 92628 Score = 40.1 bits (20), Expect = 2.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 69 cggcttctccatgggcggcg 88 |||||||||||||||||||| Sbjct: 29209 cggcttctccatgggcggcg 29228
>emb|AJ248283.1|CNSPAX01 Pyrococcus abyssi complete genome; segment 1/6 Length = 307150 Score = 40.1 bits (20), Expect = 2.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 134 gggtggccgttctcggcccg 153 |||||||||||||||||||| Sbjct: 303681 gggtggccgttctcggcccg 303662
>emb|CR857922.1| Pongo pygmaeus mRNA; cDNA DKFZp469I158 (from clone DKFZp469I158) Length = 677 Score = 40.1 bits (20), Expect = 2.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 69 cggcttctccatgggcggcg 88 |||||||||||||||||||| Sbjct: 242 cggcttctccatgggcggcg 223
>gb|AC027307.5| Homo sapiens chromosome 19 clone CTB-25B13, complete sequence Length = 153570 Score = 40.1 bits (20), Expect = 2.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 69 cggcttctccatgggcggcg 88 |||||||||||||||||||| Sbjct: 29971 cggcttctccatgggcggcg 29952
>emb|CR597356.1| full-length cDNA clone CS0DM004YD13 of Fetal liver of Homo sapiens (human) Length = 468 Score = 40.1 bits (20), Expect = 2.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 69 cggcttctccatgggcggcg 88 |||||||||||||||||||| Sbjct: 217 cggcttctccatgggcggcg 198
>emb|CR593936.1| full-length cDNA clone CS0DA002YL13 of Neuroblastoma of Homo sapiens (human) Length = 467 Score = 40.1 bits (20), Expect = 2.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 69 cggcttctccatgggcggcg 88 |||||||||||||||||||| Sbjct: 217 cggcttctccatgggcggcg 198
>emb|CR592941.1| full-length cDNA clone CS0DC025YD18 of Neuroblastoma Cot 25-normalized of Homo sapiens (human) Length = 611 Score = 40.1 bits (20), Expect = 2.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 69 cggcttctccatgggcggcg 88 |||||||||||||||||||| Sbjct: 360 cggcttctccatgggcggcg 341
>ref|XM_939370.1| PREDICTED: Homo sapiens similar to 40S ribosomal protein S15 (RIG protein) (LOC650283), mRNA Length = 512 Score = 40.1 bits (20), Expect = 2.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 69 cggcttctccatgggcggcg 88 |||||||||||||||||||| Sbjct: 243 cggcttctccatgggcggcg 224
>ref|XM_496442.2| PREDICTED: Homo sapiens similar to 40S ribosomal protein S15 (RIG protein) (LOC440733), mRNA Length = 514 Score = 40.1 bits (20), Expect = 2.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 69 cggcttctccatgggcggcg 88 |||||||||||||||||||| Sbjct: 243 cggcttctccatgggcggcg 224
>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome Length = 4659019 Score = 40.1 bits (20), Expect = 2.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 3 gagcatcgccctcgacatcg 22 |||||||||||||||||||| Sbjct: 2548104 gagcatcgccctcgacatcg 2548123
>gb|AY891970.1| Synthetic construct Homo sapiens clone FLH028831.01L ribosomal protein S15 (RPS15) mRNA, partial cds Length = 438 Score = 40.1 bits (20), Expect = 2.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 69 cggcttctccatgggcggcg 88 |||||||||||||||||||| Sbjct: 219 cggcttctccatgggcggcg 200
>dbj|AP004094.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1695_H09 Length = 114721 Score = 40.1 bits (20), Expect = 2.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 40 ctgcagctgggccccaaatt 59 |||||||||||||||||||| Sbjct: 100807 ctgcagctgggccccaaatt 100826
>dbj|AP003975.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1004_E04 Length = 133621 Score = 40.1 bits (20), Expect = 2.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 40 ctgcagctgggccccaaatt 59 |||||||||||||||||||| Sbjct: 43192 ctgcagctgggccccaaatt 43211
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 40.1 bits (20), Expect = 2.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 37 aacctgcagctgggccccaa 56 |||||||||||||||||||| Sbjct: 2114229 aacctgcagctgggccccaa 2114248
>gb|AE015451.1| Pseudomonas putida KT2440 complete genome Length = 6181863 Score = 40.1 bits (20), Expect = 2.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 68 tcggcttctccatgggcggc 87 |||||||||||||||||||| Sbjct: 4141308 tcggcttctccatgggcggc 4141327
>dbj|AB028044.1| Rhodobacter sphaeroides gene for farnesyl diphosphate synthase, complete cds Length = 1477 Score = 40.1 bits (20), Expect = 2.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 5 gcatcgccctcgacatcgag 24 |||||||||||||||||||| Sbjct: 974 gcatcgccctcgacatcgag 955
>gb|M32405.1|HUMRIGA Human homologue of rat insulinoma gene (rig), exons 1-4 Length = 2862 Score = 40.1 bits (20), Expect = 2.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 69 cggcttctccatgggcggcg 88 |||||||||||||||||||| Sbjct: 2316 cggcttctccatgggcggcg 2297
>gb|J02984.1|HUMIDB Human insulinoma rig-analog mRNA encoding DNA-binding protein, complete cds Length = 498 Score = 40.1 bits (20), Expect = 2.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 69 cggcttctccatgggcggcg 88 |||||||||||||||||||| Sbjct: 248 cggcttctccatgggcggcg 229 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,061,928 Number of Sequences: 3902068 Number of extensions: 1061928 Number of successful extensions: 73707 Number of sequences better than 10.0: 47 Number of HSP's better than 10.0 without gapping: 48 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 72936 Number of HSP's gapped (non-prelim): 767 length of query: 218 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 196 effective length of database: 17,147,199,772 effective search space: 3360851155312 effective search space used: 3360851155312 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)