ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd2i07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_472398.1| Oryza sativa (japonica cultivar-group), predic... 236 2e-59
2dbj|AK102032.1| Oryza sativa (japonica cultivar-group) cDNA clon... 236 2e-59
3emb|AL662947.3|OSJN00148 Oryza sativa genomic DNA, chromosome 4,... 165 7e-38
4dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 165 7e-38
5dbj|AK119210.1| Oryza sativa (japonica cultivar-group) cDNA clon... 139 4e-30
6dbj|AK104452.1| Oryza sativa (japonica cultivar-group) cDNA clon... 139 4e-30
7dbj|AK099017.1| Oryza sativa (japonica cultivar-group) cDNA clon... 139 4e-30
8dbj|AK061527.1| Oryza sativa (japonica cultivar-group) cDNA clon... 139 4e-30
9dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 107 1e-20
10dbj|AP005110.2| Oryza sativa (japonica cultivar-group) genomic D... 107 1e-20
11gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome 44 0.18
12emb|AL939119.1|SCO939119 Streptomyces coelicolor A3(2) complete ... 44 0.18
13ref|NM_190689.1| Oryza sativa (japonica cultivar-group), predic... 42 0.70
14gb|CP000088.1| Thermobifida fusca YX, complete genome 42 0.70
15dbj|AK061887.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 0.70
16dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.70
17dbj|AP003794.4| Oryza sativa (japonica cultivar-group) genomic D... 42 0.70
18dbj|AP003289.3| Oryza sativa (japonica cultivar-group) genomic D... 42 0.70
19dbj|AK099121.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 0.70
20dbj|AK072912.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 0.70
21gb|BC105810.1| Homo sapiens ribosomal protein S15, mRNA (cDNA cl... 40 2.8
22ref|XM_512237.1| PREDICTED: Pan troglodytes similar to ribosomal... 40 2.8
23ref|XM_515900.1| PREDICTED: Pan troglodytes similar to ribosomal... 40 2.8
24ref|XM_514280.1| PREDICTED: Pan troglodytes similar to RIKEN cDN... 40 2.8
25gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, compl... 40 2.8
26gb|BC080543.1| Homo sapiens cDNA clone IMAGE:5556479, with appar... 40 2.8
27gb|BC064908.1| Homo sapiens ribosomal protein S15, mRNA (cDNA cl... 40 2.8
28ref|NM_001018.3| Homo sapiens ribosomal protein S15 (RPS15), mRNA 40 2.8
29gb|CP000323.1| Psychrobacter cryohalolentis K5, complete genome 40 2.8
30emb|AL355472.19| Human DNA sequence from clone RP5-827C21 on chr... 40 2.8
31emb|AJ248283.1|CNSPAX01 Pyrococcus abyssi complete genome; segme... 40 2.8
32emb|CR857922.1| Pongo pygmaeus mRNA; cDNA DKFZp469I158 (from clo... 40 2.8
33gb|AC027307.5| Homo sapiens chromosome 19 clone CTB-25B13, compl... 40 2.8
34emb|CR597356.1| full-length cDNA clone CS0DM004YD13 of Fetal liv... 40 2.8
35emb|CR593936.1| full-length cDNA clone CS0DA002YL13 of Neuroblas... 40 2.8
36emb|CR592941.1| full-length cDNA clone CS0DC025YD18 of Neuroblas... 40 2.8
37ref|XM_939370.1| PREDICTED: Homo sapiens similar to 40S ribosoma... 40 2.8
38ref|XM_496442.2| PREDICTED: Homo sapiens similar to 40S ribosoma... 40 2.8
39dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome 40 2.8
40gb|AY891970.1| Synthetic construct Homo sapiens clone FLH028831.... 40 2.8
41dbj|AP004094.3| Oryza sativa (japonica cultivar-group) genomic D... 40 2.8
42dbj|AP003975.3| Oryza sativa (japonica cultivar-group) genomic D... 40 2.8
43emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,comp... 40 2.8
44gb|AE015451.1| Pseudomonas putida KT2440 complete genome 40 2.8
45dbj|AB028044.1| Rhodobacter sphaeroides gene for farnesyl diphos... 40 2.8
46gb|M32405.1|HUMRIGA Human homologue of rat insulinoma gene (rig)... 40 2.8
47gb|J02984.1|HUMIDB Human insulinoma rig-analog mRNA encoding DNA... 40 2.8 
>ref|XM_472398.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1035

 Score =  236 bits (119), Expect = 2e-59
 Identities = 193/218 (88%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagagcatcgccctcgacatcgaggagctcgncgacaacctgcagctgggccccaaattc 60
           |||||||| ||||| ||| ||||||||||||  ||||||||||||||||||||||| |||
Sbjct: 340 aagagcatagccctggacgtcgaggagctcgcggacaacctgcagctgggccccaagttc 399

                                                                       
Query: 61  cacctcgtcggcttctccatgggcggcgaaatcatgtggagctgcctcaagtacatcccg 120
            ||||| | ||||||||||||||||| || ||||||||||||||||||||| ||||| | 
Sbjct: 400 tacctcatgggcttctccatgggcggagagatcatgtggagctgcctcaagcacatctca 459

                                                                       
Query: 121 cacaggctctccggggtggccgttctcggcccggtgggcaactattggtggtccggtttg 180
           ||||||||| ||||||||||| |||| ||||| ||||||||||| ||||||||||| |||
Sbjct: 460 cacaggctcgccggggtggccattcttggccccgtgggcaactactggtggtccggcttg 519

                                                 
Query: 181 ccgtcgaacgtgtcacgggacgcctggtacgagcagct 218
           ||||||||||||||  || |||||||| || |||||||
Sbjct: 520 ccgtcgaacgtgtcgtggcacgcctggaaccagcagct 557
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>dbj|AK102032.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033081A11, full
           insert sequence
          Length = 1293

 Score =  236 bits (119), Expect = 2e-59
 Identities = 193/218 (88%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagagcatcgccctcgacatcgaggagctcgncgacaacctgcagctgggccccaaattc 60
           |||||||| ||||| ||| ||||||||||||  ||||||||||||||||||||||| |||
Sbjct: 381 aagagcatagccctggacgtcgaggagctcgcggacaacctgcagctgggccccaagttc 440

                                                                       
Query: 61  cacctcgtcggcttctccatgggcggcgaaatcatgtggagctgcctcaagtacatcccg 120
            ||||| | ||||||||||||||||| || ||||||||||||||||||||| ||||| | 
Sbjct: 441 tacctcatgggcttctccatgggcggagagatcatgtggagctgcctcaagcacatctca 500

                                                                       
Query: 121 cacaggctctccggggtggccgttctcggcccggtgggcaactattggtggtccggtttg 180
           ||||||||| ||||||||||| |||| ||||| ||||||||||| ||||||||||| |||
Sbjct: 501 cacaggctcgccggggtggccattcttggccccgtgggcaactactggtggtccggcttg 560

                                                 
Query: 181 ccgtcgaacgtgtcacgggacgcctggtacgagcagct 218
           ||||||||||||||  || |||||||| || |||||||
Sbjct: 561 ccgtcgaacgtgtcgtggcacgcctggaaccagcagct 598
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>emb|AL662947.3|OSJN00148 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0073L04,
             complete sequence
          Length = 143301

 Score =  165 bits (83), Expect = 7e-38
 Identities = 103/110 (93%)
 Strand = Plus / Plus

                                                                         
Query: 1     aagagcatcgccctcgacatcgaggagctcgncgacaacctgcagctgggccccaaattc 60
             |||||||||||||| |||||||||||||||| |||||||||||||||||||||||| |||
Sbjct: 91872 aagagcatcgccctggacatcgaggagctcgccgacaacctgcagctgggccccaagttc 91931

                                                               
Query: 61    cacctcgtcggcttctccatgggcggcgaaatcatgtggagctgcctcaa 110
              ||||| | |||||||||||||||||||| ||||||||||||||||||||
Sbjct: 91932 tacctcatgggcttctccatgggcggcgagatcatgtggagctgcctcaa 91981



 Score =  141 bits (71), Expect = 1e-30
 Identities = 112/126 (88%)
 Strand = Plus / Plus

                                                                         
Query: 1     aagagcatcgccctcgacatcgaggagctcgncgacaacctgcagctgggccccaaattc 60
             |||||||| ||||| ||| ||||||||||||  ||||||||||||||||||||||| |||
Sbjct: 83460 aagagcatagccctggacgtcgaggagctcgcggacaacctgcagctgggccccaagttc 83519

                                                                         
Query: 61    cacctcgtcggcttctccatgggcggcgaaatcatgtggagctgcctcaagtacatcccg 120
              ||||| | ||||||||||||||||| || ||||||||||||||||||||| ||||| | 
Sbjct: 83520 tacctcatgggcttctccatgggcggagagatcatgtggagctgcctcaagcacatctca 83579

                   
Query: 121   cacagg 126
             ||||||
Sbjct: 83580 cacagg 83585



 Score =  103 bits (52), Expect = 2e-19
 Identities = 85/96 (88%)
 Strand = Plus / Plus

                                                                         
Query: 123   caggctctccggggtggccgttctcggcccggtgggcaactattggtggtccggtttgcc 182
             ||||||| ||||||||||| |||| ||||| ||||||||||| ||||||||||| |||||
Sbjct: 83677 caggctcgccggggtggccattcttggccccgtgggcaactactggtggtccggcttgcc 83736

                                                 
Query: 183   gtcgaacgtgtcacgggacgcctggtacgagcagct 218
             ||||||||||||  || |||||||| || |||||||
Sbjct: 83737 gtcgaacgtgtcgtggcacgcctggaaccagcagct 83772



 Score = 87.7 bits (44), Expect = 1e-14
 Identities = 65/72 (90%)
 Strand = Plus / Plus

                                                                         
Query: 123   caggctctccggggtggccgttctcggcccggtgggcaactattggtggtccggtttgcc 182
             ||||||| ||||||||||| |||| | ||| ||||||||||||||||||||||| |||||
Sbjct: 92110 caggctcgccggggtggccattcttgcccccgtgggcaactattggtggtccggcttgcc 92169

                         
Query: 183   gtcgaacgtgtc 194
             ||||||| ||||
Sbjct: 92170 gtcgaacatgtc 92181
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  165 bits (83), Expect = 7e-38
 Identities = 103/110 (93%)
 Strand = Plus / Plus

                                                                            
Query: 1        aagagcatcgccctcgacatcgaggagctcgncgacaacctgcagctgggccccaaattc 60
                |||||||||||||| |||||||||||||||| |||||||||||||||||||||||| |||
Sbjct: 20361239 aagagcatcgccctggacatcgaggagctcgccgacaacctgcagctgggccccaagttc 20361298

                                                                  
Query: 61       cacctcgtcggcttctccatgggcggcgaaatcatgtggagctgcctcaa 110
                 ||||| | |||||||||||||||||||| ||||||||||||||||||||
Sbjct: 20361299 tacctcatgggcttctccatgggcggcgagatcatgtggagctgcctcaa 20361348



 Score =  141 bits (71), Expect = 1e-30
 Identities = 112/126 (88%)
 Strand = Plus / Plus

                                                                            
Query: 1        aagagcatcgccctcgacatcgaggagctcgncgacaacctgcagctgggccccaaattc 60
                |||||||| ||||| ||| ||||||||||||  ||||||||||||||||||||||| |||
Sbjct: 20352827 aagagcatagccctggacgtcgaggagctcgcggacaacctgcagctgggccccaagttc 20352886

                                                                            
Query: 61       cacctcgtcggcttctccatgggcggcgaaatcatgtggagctgcctcaagtacatcccg 120
                 ||||| | ||||||||||||||||| || ||||||||||||||||||||| ||||| | 
Sbjct: 20352887 tacctcatgggcttctccatgggcggagagatcatgtggagctgcctcaagcacatctca 20352946

                      
Query: 121      cacagg 126
                ||||||
Sbjct: 20352947 cacagg 20352952



 Score =  103 bits (52), Expect = 2e-19
 Identities = 85/96 (88%)
 Strand = Plus / Plus

                                                                            
Query: 123      caggctctccggggtggccgttctcggcccggtgggcaactattggtggtccggtttgcc 182
                ||||||| ||||||||||| |||| ||||| ||||||||||| ||||||||||| |||||
Sbjct: 20353044 caggctcgccggggtggccattcttggccccgtgggcaactactggtggtccggcttgcc 20353103

                                                    
Query: 183      gtcgaacgtgtcacgggacgcctggtacgagcagct 218
                ||||||||||||  || |||||||| || |||||||
Sbjct: 20353104 gtcgaacgtgtcgtggcacgcctggaaccagcagct 20353139



 Score = 87.7 bits (44), Expect = 1e-14
 Identities = 65/72 (90%)
 Strand = Plus / Plus

                                                                            
Query: 123      caggctctccggggtggccgttctcggcccggtgggcaactattggtggtccggtttgcc 182
                ||||||| ||||||||||| |||| | ||| ||||||||||||||||||||||| |||||
Sbjct: 20361477 caggctcgccggggtggccattcttgcccccgtgggcaactattggtggtccggcttgcc 20361536

                            
Query: 183      gtcgaacgtgtc 194
                ||||||| ||||
Sbjct: 20361537 gtcgaacatgtc 20361548
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>dbj|AK119210.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-041-E04, full
           insert sequence
          Length = 1405

 Score =  139 bits (70), Expect = 4e-30
 Identities = 153/181 (84%)
 Strand = Plus / Plus

                                                                       
Query: 14  tcgacatcgaggagctcgncgacaacctgcagctgggccccaaattccacctcgtcggct 73
           |||||||||| | ||||| ||||   |||||||| |||||||| ||| ||||| ||||||
Sbjct: 563 tcgacatcgaagggctcgccgacgggctgcagctcggccccaagttctacctcatcggct 622

                                                                       
Query: 74  tctccatgggcggcgaaatcatgtggagctgcctcaagtacatcccgcacaggctctccg 133
            |||||||||||| |||||||||||||||||||||||  ||||||| ||||||||| | |
Sbjct: 623 actccatgggcggggaaatcatgtggagctgcctcaaaaacatccctcacaggctcgcgg 682

                                                                       
Query: 134 gggtggccgttctcggcccggtgggcaactattggtggtccggtttgccgtcgaacgtgt 193
           ||||| |  | || || |||||||| ||||| |||||||| ||||  |||||||||||||
Sbjct: 683 gggtgtcaatcctggggccggtggggaactactggtggtcgggttacccgtcgaacgtgt 742

            
Query: 194 c 194
           |
Sbjct: 743 c 743
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>dbj|AK104452.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-212-H03, full
           insert sequence
          Length = 1399

 Score =  139 bits (70), Expect = 4e-30
 Identities = 153/181 (84%)
 Strand = Plus / Plus

                                                                       
Query: 14  tcgacatcgaggagctcgncgacaacctgcagctgggccccaaattccacctcgtcggct 73
           |||||||||| | ||||| ||||   |||||||| |||||||| ||| ||||| ||||||
Sbjct: 563 tcgacatcgaagggctcgccgacgggctgcagctcggccccaagttctacctcatcggct 622

                                                                       
Query: 74  tctccatgggcggcgaaatcatgtggagctgcctcaagtacatcccgcacaggctctccg 133
            |||||||||||| |||||||||||||||||||||||  ||||||| ||||||||| | |
Sbjct: 623 actccatgggcggggaaatcatgtggagctgcctcaaaaacatccctcacaggctcgcgg 682

                                                                       
Query: 134 gggtggccgttctcggcccggtgggcaactattggtggtccggtttgccgtcgaacgtgt 193
           ||||| |  | || || |||||||| ||||| |||||||| ||||  |||||||||||||
Sbjct: 683 gggtgtcaatcctggggccggtggggaactactggtggtcgggttacccgtcgaacgtgt 742

            
Query: 194 c 194
           |
Sbjct: 743 c 743
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>dbj|AK099017.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013119A16, full
           insert sequence
          Length = 1391

 Score =  139 bits (70), Expect = 4e-30
 Identities = 153/181 (84%)
 Strand = Plus / Plus

                                                                       
Query: 14  tcgacatcgaggagctcgncgacaacctgcagctgggccccaaattccacctcgtcggct 73
           |||||||||| | ||||| ||||   |||||||| |||||||| ||| ||||| ||||||
Sbjct: 564 tcgacatcgaagggctcgccgacgggctgcagctcggccccaagttctacctcatcggct 623

                                                                       
Query: 74  tctccatgggcggcgaaatcatgtggagctgcctcaagtacatcccgcacaggctctccg 133
            |||||||||||| |||||||||||||||||||||||  ||||||| ||||||||| | |
Sbjct: 624 actccatgggcggggaaatcatgtggagctgcctcaaaaacatccctcacaggctcgcgg 683

                                                                       
Query: 134 gggtggccgttctcggcccggtgggcaactattggtggtccggtttgccgtcgaacgtgt 193
           ||||| |  | || || |||||||| ||||| |||||||| ||||  |||||||||||||
Sbjct: 684 gggtgtcaatcctggggccggtggggaactactggtggtcgggttacccgtcgaacgtgt 743

            
Query: 194 c 194
           |
Sbjct: 744 c 744
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>dbj|AK061527.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-310-D10, full
           insert sequence
          Length = 1409

 Score =  139 bits (70), Expect = 4e-30
 Identities = 153/181 (84%)
 Strand = Plus / Plus

                                                                       
Query: 14  tcgacatcgaggagctcgncgacaacctgcagctgggccccaaattccacctcgtcggct 73
           |||||||||| | ||||| ||||   |||||||| |||||||| ||| ||||| ||||||
Sbjct: 563 tcgacatcgaagggctcgccgacgggctgcagctcggccccaagttctacctcatcggct 622

                                                                       
Query: 74  tctccatgggcggcgaaatcatgtggagctgcctcaagtacatcccgcacaggctctccg 133
            |||||||||||| |||||||||||||||||||||||  ||||||| ||||||||| | |
Sbjct: 623 actccatgggcggggaaatcatgtggagctgcctcaaaaacatccctcacaggctcgcgg 682

                                                                       
Query: 134 gggtggccgttctcggcccggtgggcaactattggtggtccggtttgccgtcgaacgtgt 193
           ||||| |  | || || |||||||| ||||| |||||||| ||||  |||||||||||||
Sbjct: 683 gggtgtcaatcctggggccggtggggaactactggtggtcgggttacccgtcgaacgtgt 742

            
Query: 194 c 194
           |
Sbjct: 743 c 743
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  107 bits (54), Expect = 1e-20
 Identities = 98/113 (86%)
 Strand = Plus / Plus

                                                                            
Query: 14       tcgacatcgaggagctcgncgacaacctgcagctgggccccaaattccacctcgtcggct 73
                |||||||||| | ||||| ||||   |||||||| |||||||| ||| ||||| ||||||
Sbjct: 19613844 tcgacatcgaagggctcgccgacgggctgcagctcggccccaagttctacctcatcggct 19613903

                                                                     
Query: 74       tctccatgggcggcgaaatcatgtggagctgcctcaagtacatcccgcacagg 126
                 |||||||||||| |||||||||||||||||||||||  ||||||| ||||||
Sbjct: 19613904 actccatgggcggggaaatcatgtggagctgcctcaaaaacatccctcacagg 19613956



 Score = 48.1 bits (24), Expect = 0.011
 Identities = 39/44 (88%)
 Strand = Plus / Plus

                                                            
Query: 151      ccggtgggcaactattggtggtccggtttgccgtcgaacgtgtc 194
                |||||||| ||||| |||||||| ||||  ||||||||||||||
Sbjct: 19614084 ccggtggggaactactggtggtcgggttacccgtcgaacgtgtc 19614127



 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 40       ctgcagctgggccccaaatt 59
                ||||||||||||||||||||
Sbjct: 33884229 ctgcagctgggccccaaatt 33884248
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>dbj|AP005110.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0605D08
          Length = 144340

 Score =  107 bits (54), Expect = 1e-20
 Identities = 98/113 (86%)
 Strand = Plus / Plus

                                                                         
Query: 14    tcgacatcgaggagctcgncgacaacctgcagctgggccccaaattccacctcgtcggct 73
             |||||||||| | ||||| ||||   |||||||| |||||||| ||| ||||| ||||||
Sbjct: 80130 tcgacatcgaagggctcgccgacgggctgcagctcggccccaagttctacctcatcggct 80189

                                                                  
Query: 74    tctccatgggcggcgaaatcatgtggagctgcctcaagtacatcccgcacagg 126
              |||||||||||| |||||||||||||||||||||||  ||||||| ||||||
Sbjct: 80190 actccatgggcggggaaatcatgtggagctgcctcaaaaacatccctcacagg 80242



 Score = 48.1 bits (24), Expect = 0.011
 Identities = 39/44 (88%)
 Strand = Plus / Plus

                                                         
Query: 151   ccggtgggcaactattggtggtccggtttgccgtcgaacgtgtc 194
             |||||||| ||||| |||||||| ||||  ||||||||||||||
Sbjct: 80370 ccggtggggaactactggtggtcgggttacccgtcgaacgtgtc 80413
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>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome
          Length = 6438405

 Score = 44.1 bits (22), Expect = 0.18
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 67      gtcggcttctccatgggcggcg 88
               ||||||||||||||||||||||
Sbjct: 3747350 gtcggcttctccatgggcggcg 3747371
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>emb|AL939119.1|SCO939119 Streptomyces coelicolor A3(2) complete genome; segment 16/29
          Length = 299050

 Score = 44.1 bits (22), Expect = 0.18
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 66    cgtcggcttctccatgggcggc 87
             ||||||||||||||||||||||
Sbjct: 47150 cgtcggcttctccatgggcggc 47171
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>ref|NM_190689.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1044

 Score = 42.1 bits (21), Expect = 0.70
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                            
Query: 96  gtggagctgcctcaagtacatcccgcacaggct 128
           ||||||||||||||| ||||||||  |||||||
Sbjct: 441 gtggagctgcctcaactacatcccttacaggct 473



 Score = 42.1 bits (21), Expect = 0.70
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 20  tcgaggagctcgncgacaacctgcagct 47
           |||||||||||| |||||| ||||||||
Sbjct: 365 tcgaggagctcgccgacaagctgcagct 392
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>gb|CP000088.1| Thermobifida fusca YX, complete genome
          Length = 3642249

 Score = 42.1 bits (21), Expect = 0.70
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 63      cctcgtcggcttctccatggg 83
               |||||||||||||||||||||
Sbjct: 1923575 cctcgtcggcttctccatggg 1923555
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>dbj|AK061887.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-041-F10, full
           insert sequence
          Length = 1519

 Score = 42.1 bits (21), Expect = 0.70
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                            
Query: 96  gtggagctgcctcaagtacatcccgcacaggct 128
           ||||||||||||||| ||||||||  |||||||
Sbjct: 686 gtggagctgcctcaactacatcccttacaggct 718



 Score = 42.1 bits (21), Expect = 0.70
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 20  tcgaggagctcgncgacaacctgcagct 47
           |||||||||||| |||||| ||||||||
Sbjct: 610 tcgaggagctcgccgacaagctgcagct 637
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 42.1 bits (21), Expect = 0.70
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                            
Query: 20       tcgaggagctcgncgacaacctgcagct 47
                |||||||||||| |||||| ||||||||
Sbjct: 37149498 tcgaggagctcgccgacaagctgcagct 37149525



 Score = 40.1 bits (20), Expect = 2.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 96       gtggagctgcctcaagtacatccc 119
                ||||||||||||||| ||||||||
Sbjct: 37149574 gtggagctgcctcaactacatccc 37149597
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>dbj|AP003794.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0489B03
          Length = 150381

 Score = 42.1 bits (21), Expect = 0.70
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 20    tcgaggagctcgncgacaacctgcagct 47
             |||||||||||| |||||| ||||||||
Sbjct: 24154 tcgaggagctcgccgacaagctgcagct 24181



 Score = 40.1 bits (20), Expect = 2.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 96    gtggagctgcctcaagtacatccc 119
             ||||||||||||||| ||||||||
Sbjct: 24230 gtggagctgcctcaactacatccc 24253
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>dbj|AP003289.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0683F02
          Length = 153388

 Score = 42.1 bits (21), Expect = 0.70
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 20     tcgaggagctcgncgacaacctgcagct 47
              |||||||||||| |||||| ||||||||
Sbjct: 150639 tcgaggagctcgccgacaagctgcagct 150666



 Score = 40.1 bits (20), Expect = 2.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 96     gtggagctgcctcaagtacatccc 119
              ||||||||||||||| ||||||||
Sbjct: 150715 gtggagctgcctcaactacatccc 150738
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>dbj|AK099121.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023038D03, full
           insert sequence
          Length = 1567

 Score = 42.1 bits (21), Expect = 0.70
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                            
Query: 96  gtggagctgcctcaagtacatcccgcacaggct 128
           ||||||||||||||| ||||||||  |||||||
Sbjct: 662 gtggagctgcctcaactacatcccttacaggct 694



 Score = 42.1 bits (21), Expect = 0.70
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 20  tcgaggagctcgncgacaacctgcagct 47
           |||||||||||| |||||| ||||||||
Sbjct: 586 tcgaggagctcgccgacaagctgcagct 613
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>dbj|AK072912.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023147H18, full
           insert sequence
          Length = 1358

 Score = 42.1 bits (21), Expect = 0.70
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                            
Query: 96  gtggagctgcctcaagtacatcccgcacaggct 128
           ||||||||||||||| ||||||||  |||||||
Sbjct: 550 gtggagctgcctcaactacatcccttacaggct 582



 Score = 42.1 bits (21), Expect = 0.70
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 20  tcgaggagctcgncgacaacctgcagct 47
           |||||||||||| |||||| ||||||||
Sbjct: 474 tcgaggagctcgccgacaagctgcagct 501
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>gb|BC105810.1| Homo sapiens ribosomal protein S15, mRNA (cDNA clone MGC:111130
           IMAGE:6744553), complete cds
          Length = 537

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 69  cggcttctccatgggcggcg 88
           ||||||||||||||||||||
Sbjct: 259 cggcttctccatgggcggcg 240
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>ref|XM_512237.1| PREDICTED: Pan troglodytes similar to ribosomal protein S15; rat
           insulinoma gene (LOC455550), mRNA
          Length = 550

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 69  cggcttctccatgggcggcg 88
           ||||||||||||||||||||
Sbjct: 299 cggcttctccatgggcggcg 280
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>ref|XM_515900.1| PREDICTED: Pan troglodytes similar to ribosomal protein S15; rat
           insulinoma gene (LOC459733), mRNA
          Length = 504

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 69  cggcttctccatgggcggcg 88
           ||||||||||||||||||||
Sbjct: 226 cggcttctccatgggcggcg 207
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>ref|XM_514280.1| PREDICTED: Pan troglodytes similar to RIKEN cDNA 1810063B05
           (LOC457829), mRNA
          Length = 1989

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 69  cggcttctccatgggcggcg 88
           ||||||||||||||||||||
Sbjct: 883 cggcttctccatgggcggcg 902
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>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome
          Length = 3188609

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 5       gcatcgccctcgacatcgag 24
               ||||||||||||||||||||
Sbjct: 2898940 gcatcgccctcgacatcgag 2898959
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>gb|BC080543.1| Homo sapiens cDNA clone IMAGE:5556479, with apparent retained intron
          Length = 1629

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 69   cggcttctccatgggcggcg 88
            ||||||||||||||||||||
Sbjct: 1361 cggcttctccatgggcggcg 1342
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>gb|BC064908.1| Homo sapiens ribosomal protein S15, mRNA (cDNA clone MGC:70657
           IMAGE:6053159), complete cds
          Length = 539

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 69  cggcttctccatgggcggcg 88
           ||||||||||||||||||||
Sbjct: 225 cggcttctccatgggcggcg 206
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>ref|NM_001018.3| Homo sapiens ribosomal protein S15 (RPS15), mRNA
          Length = 531

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 69  cggcttctccatgggcggcg 88
           ||||||||||||||||||||
Sbjct: 281 cggcttctccatgggcggcg 262
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>gb|CP000323.1| Psychrobacter cryohalolentis K5, complete genome
          Length = 3059876

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 65      tcgtcggcttctccatgggcggcg 88
               ||||||||||||| ||||||||||
Sbjct: 2784848 tcgtcggcttctctatgggcggcg 2784871
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>emb|AL355472.19| Human DNA sequence from clone RP5-827C21 on chromosome 1 Contains a
             ribosomal protein S15 (RPS15) pseudogene, three novel
             genes (LOC388753), the 3' end of the TARBP1 gene for TAR
             (HIV) RNA binding protein 1 and a CpG island, complete
             sequence
          Length = 92628

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 69    cggcttctccatgggcggcg 88
             ||||||||||||||||||||
Sbjct: 29209 cggcttctccatgggcggcg 29228
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>emb|AJ248283.1|CNSPAX01 Pyrococcus abyssi complete genome; segment 1/6
          Length = 307150

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 134    gggtggccgttctcggcccg 153
              ||||||||||||||||||||
Sbjct: 303681 gggtggccgttctcggcccg 303662
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>emb|CR857922.1| Pongo pygmaeus mRNA; cDNA DKFZp469I158 (from clone DKFZp469I158)
          Length = 677

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 69  cggcttctccatgggcggcg 88
           ||||||||||||||||||||
Sbjct: 242 cggcttctccatgggcggcg 223
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>gb|AC027307.5| Homo sapiens chromosome 19 clone CTB-25B13, complete sequence
          Length = 153570

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 69    cggcttctccatgggcggcg 88
             ||||||||||||||||||||
Sbjct: 29971 cggcttctccatgggcggcg 29952
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>emb|CR597356.1| full-length cDNA clone CS0DM004YD13 of Fetal liver of Homo sapiens
           (human)
          Length = 468

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 69  cggcttctccatgggcggcg 88
           ||||||||||||||||||||
Sbjct: 217 cggcttctccatgggcggcg 198
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>emb|CR593936.1| full-length cDNA clone CS0DA002YL13 of Neuroblastoma of Homo
           sapiens (human)
          Length = 467

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 69  cggcttctccatgggcggcg 88
           ||||||||||||||||||||
Sbjct: 217 cggcttctccatgggcggcg 198
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>emb|CR592941.1| full-length cDNA clone CS0DC025YD18 of Neuroblastoma Cot
           25-normalized of Homo sapiens (human)
          Length = 611

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 69  cggcttctccatgggcggcg 88
           ||||||||||||||||||||
Sbjct: 360 cggcttctccatgggcggcg 341
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>ref|XM_939370.1| PREDICTED: Homo sapiens similar to 40S ribosomal protein S15 (RIG
           protein) (LOC650283), mRNA
          Length = 512

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 69  cggcttctccatgggcggcg 88
           ||||||||||||||||||||
Sbjct: 243 cggcttctccatgggcggcg 224
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>ref|XM_496442.2| PREDICTED: Homo sapiens similar to 40S ribosomal protein S15 (RIG
           protein) (LOC440733), mRNA
          Length = 514

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 69  cggcttctccatgggcggcg 88
           ||||||||||||||||||||
Sbjct: 243 cggcttctccatgggcggcg 224
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>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome
          Length = 4659019

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 3       gagcatcgccctcgacatcg 22
               ||||||||||||||||||||
Sbjct: 2548104 gagcatcgccctcgacatcg 2548123
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>gb|AY891970.1| Synthetic construct Homo sapiens clone FLH028831.01L ribosomal
           protein S15 (RPS15) mRNA, partial cds
          Length = 438

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 69  cggcttctccatgggcggcg 88
           ||||||||||||||||||||
Sbjct: 219 cggcttctccatgggcggcg 200
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>dbj|AP004094.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1695_H09
          Length = 114721

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 40     ctgcagctgggccccaaatt 59
              ||||||||||||||||||||
Sbjct: 100807 ctgcagctgggccccaaatt 100826
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>dbj|AP003975.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1004_E04
          Length = 133621

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 40    ctgcagctgggccccaaatt 59
             ||||||||||||||||||||
Sbjct: 43192 ctgcagctgggccccaaatt 43211
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>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence
          Length = 5888780

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 37      aacctgcagctgggccccaa 56
               ||||||||||||||||||||
Sbjct: 2114229 aacctgcagctgggccccaa 2114248
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>gb|AE015451.1| Pseudomonas putida KT2440 complete genome
          Length = 6181863

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 68      tcggcttctccatgggcggc 87
               ||||||||||||||||||||
Sbjct: 4141308 tcggcttctccatgggcggc 4141327
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>dbj|AB028044.1| Rhodobacter sphaeroides gene for farnesyl diphosphate synthase,
           complete cds
          Length = 1477

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 5   gcatcgccctcgacatcgag 24
           ||||||||||||||||||||
Sbjct: 974 gcatcgccctcgacatcgag 955
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>gb|M32405.1|HUMRIGA Human homologue of rat insulinoma gene (rig), exons 1-4
          Length = 2862

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 69   cggcttctccatgggcggcg 88
            ||||||||||||||||||||
Sbjct: 2316 cggcttctccatgggcggcg 2297
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>gb|J02984.1|HUMIDB Human insulinoma rig-analog mRNA encoding DNA-binding protein,
           complete cds
          Length = 498

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 69  cggcttctccatgggcggcg 88
           ||||||||||||||||||||
Sbjct: 248 cggcttctccatgggcggcg 229


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,061,928
Number of Sequences: 3902068
Number of extensions: 1061928
Number of successful extensions: 73707
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 72936
Number of HSP's gapped (non-prelim): 767
length of query: 218
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 196
effective length of database: 17,147,199,772
effective search space: 3360851155312
effective search space used: 3360851155312
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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