ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd2i04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PTM1_YEAST (P32857) Protein PTM1 precursor 29 3.5
2COX10_YARLI (Q6C0L2) Protoheme IX farnesyltransferase, mitochond... 28 7.9
3ALEUL_ARATH (Q8RWQ9) Thiol protease aleurain-like precursor (EC ... 28 7.9

>PTM1_YEAST (P32857) Protein PTM1 precursor|
          Length = 531

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -2

Query: 283 FFFLLTIAIFISIT-PQLNQTNREQTPTLAALQVSICVAF 167
           FF LL IA+   I  P+LN+T   +     AL  +IC+ F
Sbjct: 280 FFLLLIIALGYGIVYPKLNKTLMRRCQMYGALTYAICIGF 319



to top

>COX10_YARLI (Q6C0L2) Protoheme IX farnesyltransferase, mitochondrial precursor|
           (EC 2.5.1.-) (Heme O synthase)
          Length = 471

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
 Frame = -1

Query: 212 NPNIGSLAGLNMRGLSFQLCI-IQFASI--YWFLFNSFANN*LID*WAF 75
           NP + +  GL    L F LC+ + + ++  +WF+ +S   N  +  WAF
Sbjct: 355 NPGLNARVGLRYALLMFPLCVGLSYYNVTDWWFVLDSSVLNAWMAWWAF 403



to top

>ALEUL_ARATH (Q8RWQ9) Thiol protease aleurain-like precursor (EC 3.4.22.16)|
          Length = 358

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -1

Query: 206 NIGSLAGLNMRGLSFQLCIIQFASIYWFLFNSF 108
           N+  +   N +GLS++L + QFA + W  F  +
Sbjct: 86  NLDLIRSTNKKGLSYKLSLNQFADLTWQEFQRY 118


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,644,849
Number of Sequences: 219361
Number of extensions: 646044
Number of successful extensions: 1168
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1168
length of database: 80,573,946
effective HSP length: 70
effective length of database: 65,218,676
effective search space used: 1565248224
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top