ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd2i03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1HMOC_DROME (P22810) Homeotic protein ocelliless (Protein orthode... 28 4.4
2VCLA_GOSHI (P09799) Vicilin GC72-A precursor (Alpha-globulin A) 28 7.5
3POF3_SCHPO (O74991) F-box/TPR-repeat protein pof3 27 9.8
4FLNB_MOUSE (Q80X90) Filamin-B (FLN-B) (Beta-filamin) (Actin-bind... 27 9.8

>HMOC_DROME (P22810) Homeotic protein ocelliless (Protein orthodenticle)|
          Length = 671

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 17/58 (29%), Positives = 21/58 (36%), Gaps = 3/58 (5%)
 Frame = +2

Query: 8   HHHPSRASCERKCS---HWRDPARKEQCVQQCMRYGLNLXXXXXXXXIERPHAXEVEV 172
           H HPSRA C R+ S    W    R+      C  Y  N         ++R     V V
Sbjct: 535 HRHPSRAPCPRRPSPRTAWITCRRRISTRIWCRIYSSNTAAVAATTTVQRGQVVRVRV 592



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>VCLA_GOSHI (P09799) Vicilin GC72-A precursor (Alpha-globulin A)|
          Length = 605

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 10/23 (43%), Positives = 18/23 (78%), Gaps = 2/23 (8%)
 Frame = +2

Query: 32  CERKCSHWRD--PARKEQCVQQC 94
           C+++C  W++  P RK+QCV++C
Sbjct: 125 CQQRCQ-WQEQRPERKQQCVKEC 146



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>POF3_SCHPO (O74991) F-box/TPR-repeat protein pof3|
          Length = 577

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +2

Query: 20  SRASCERKCSHWRDPARKEQCVQQCMRY 103
           S   C + C HWRD  +KE  +  C+ +
Sbjct: 155 SIVQCMQVCKHWRDCIKKEPSLFCCLDF 182



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>FLNB_MOUSE (Q80X90) Filamin-B (FLN-B) (Beta-filamin) (Actin-binding-like|
           protein) (ABP-280-like protein)
          Length = 2602

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +2

Query: 140 IERPHAXEVEVDDQSNDSCDHK 205
           IE P   ++E DDQ++ SCD K
Sbjct: 586 IEGPSQAKIEYDDQNDGSCDVK 607


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,969,246
Number of Sequences: 219361
Number of extensions: 456373
Number of successful extensions: 1158
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1158
length of database: 80,573,946
effective HSP length: 84
effective length of database: 62,147,622
effective search space used: 1491542928
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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