ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd2i01 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC135258.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0097K08 map C827S, complete sequence Length = 137870 Score = 44.1 bits (22), Expect = 0.52 Identities = 79/98 (80%) Strand = Plus / Plus Query: 65 caggcggacctatggcgccatagcttgtgccacctcagggccatagcactcaggtgtgct 124 ||||| |||||||||||||| ||||| | | |||||| |||||| || ||| | || || Sbjct: 43569 caggccgacctatggcgccacagcttctcctacctcacggccatggcgctccgctgcgcc 43628 Query: 125 gtccagctcggcatccctactgcgattcaccgactcgg 162 | | ||||||||||||| || || || ||||| ||||| Sbjct: 43629 gccaagctcggcatccccaccgccatccaccgcctcgg 43666
>gb|AC147811.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0026P08 map near C827S, complete sequence Length = 148676 Score = 44.1 bits (22), Expect = 0.52 Identities = 79/98 (80%) Strand = Plus / Minus Query: 65 caggcggacctatggcgccatagcttgtgccacctcagggccatagcactcaggtgtgct 124 ||||| |||||||||||||| ||||| | | |||||| |||||| || ||| | || || Sbjct: 52206 caggccgacctatggcgccacagcttctcctacctcacggccatggcgctccgctgcgcc 52147 Query: 125 gtccagctcggcatccctactgcgattcaccgactcgg 162 | | ||||||||||||| || || || ||||| ||||| Sbjct: 52146 gccaagctcggcatccccaccgccatccaccgcctcgg 52109
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 44.1 bits (22), Expect = 0.52 Identities = 79/98 (80%) Strand = Plus / Minus Query: 65 caggcggacctatggcgccatagcttgtgccacctcagggccatagcactcaggtgtgct 124 ||||| |||||||||||||| ||||| | | |||||| |||||| || ||| | || || Sbjct: 7138986 caggccgacctatggcgccacagcttctcctacctcacggccatggcgctccgctgcgcc 7138927 Query: 125 gtccagctcggcatccctactgcgattcaccgactcgg 162 | | ||||||||||||| || || || ||||| ||||| Sbjct: 7138926 gccaagctcggcatccccaccgccatccaccgcctcgg 7138889
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 44.1 bits (22), Expect = 0.52 Identities = 79/98 (80%) Strand = Plus / Minus Query: 65 caggcggacctatggcgccatagcttgtgccacctcagggccatagcactcaggtgtgct 124 ||||| |||||||||||||| ||||| | | |||||| |||||| || ||| | || || Sbjct: 7204957 caggccgacctatggcgccacagcttctcctacctcacggccatggcgctccgctgcgcc 7204898 Query: 125 gtccagctcggcatccctactgcgattcaccgactcgg 162 | | ||||||||||||| || || || ||||| ||||| Sbjct: 7204897 gccaagctcggcatccccaccgccatccaccgcctcgg 7204860
>gb|AC121824.2| Mus musculus BAC clone RP23-467P15 from 18, complete sequence Length = 195027 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 540 tggctgcccatgaccatttggggat 564 ||||| ||||||||||||||||||| Sbjct: 28463 tggcttcccatgaccatttggggat 28439
>dbj|AK161182.1| Mus musculus 0 day neonate head cDNA, RIKEN full-length enriched library, clone:4832408G11 product:erythrocyte protein band 4.1-like 4a, full insert sequence Length = 3778 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 540 tggctgcccatgaccatttggggat 564 ||||| ||||||||||||||||||| Sbjct: 1864 tggcttcccatgaccatttggggat 1888
>gb|AY177404.1| Secale cereale O-methyltransferase mRNA, complete cds Length = 1373 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 413 gctgactggttcaagaaggac 433 ||||||||||||||||||||| Sbjct: 450 gctgactggttcaagaaggac 470
>gb|AC142106.4| Mus musculus BAC clone RP24-180L10 from 1, complete sequence Length = 194634 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 424 caagaaggacatcgcaccaccaccatcac 452 ||||||||||| | ||||||||||||||| Sbjct: 154441 caagaaggacaccccaccaccaccatcac 154469
>gb|AC140367.3| Mus musculus BAC clone RP24-226L19 from 1, complete sequence Length = 183563 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Minus Query: 424 caagaaggacatcgcaccaccaccatcac 452 ||||||||||| | ||||||||||||||| Sbjct: 166052 caagaaggacaccccaccaccaccatcac 166024
>gb|AC140461.4| Mus musculus BAC clone RP23-11M24 from 1, complete sequence Length = 202209 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 523 gatgttccatgaagctttggc 543 ||||||||||||||||||||| Sbjct: 129715 gatgttccatgaagctttggc 129695
>ref|XM_635461.1| Dictyostelium discoideum hypothetical protein (DDB0204579), partial mRNA Length = 1566 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 438 caccaccaccatcaccattt 457 |||||||||||||||||||| Sbjct: 262 caccaccaccatcaccattt 243
>ref|XM_463174.1| Oryza sativa (japonica cultivar-group), mRNA Length = 924 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 436 cgcaccaccaccatcaccat 455 |||||||||||||||||||| Sbjct: 536 cgcaccaccaccatcaccat 555
>gb|DQ158085.1| Streptococcus equi subsp. equi collagen-like protein I (sclI) gene, complete cds Length = 1449 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 401 gccttagggctagctgactg 420 |||||||||||||||||||| Sbjct: 1310 gccttagggctagctgactg 1291
>gb|AY326314.1| Streptococcus equi collagen-like protein 3 (Scl3A) gene, partial cds Length = 1473 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 401 gccttagggctagctgactg 420 |||||||||||||||||||| Sbjct: 1337 gccttagggctagctgactg 1318
>ref|XM_955477.1| Neurospora crassa OR74A hypothetical protein (NCU05608.1) partial mRNA Length = 7530 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 518 gacaagatgttccatgaagc 537 |||||||||||||||||||| Sbjct: 754 gacaagatgttccatgaagc 773
>ref|XM_325462.1| Neurospora crassa OR74A hypothetical protein (NCU05608.1) partial mRNA Length = 7530 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 518 gacaagatgttccatgaagc 537 |||||||||||||||||||| Sbjct: 754 gacaagatgttccatgaagc 773
>ref|XM_452647.1| Kluyveromyces lactis NRRL Y-1140, KLLA0C10054g predicted mRNA Length = 708 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 438 caccaccaccatcaccattt 457 |||||||||||||||||||| Sbjct: 309 caccaccaccatcaccattt 328
>gb|AC156605.13| Mus musculus chromosome 7, clone RP23-305G5, complete sequence Length = 234816 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 438 caccaccaccatcaccattt 457 |||||||||||||||||||| Sbjct: 50207 caccaccaccatcaccattt 50226
>gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, complete genome Length = 5928787 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 76 atggcgccatagcttgtgcc 95 |||||||||||||||||||| Sbjct: 4526138 atggcgccatagcttgtgcc 4526119
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 436 cgcaccaccaccatcaccat 455 |||||||||||||||||||| Sbjct: 22936371 cgcaccaccaccatcaccat 22936390
>gb|AC009055.10| Homo sapiens chromosome 16 clone RP11-256I9, complete sequence Length = 170831 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 438 caccaccaccatcaccattt 457 |||||||||||||||||||| Sbjct: 140495 caccaccaccatcaccattt 140476
>ref|NG_000839.1| Homo sapiens cystatin locus (CST@) on chromosome 20 Length = 477159 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 438 caccaccaccatcaccattt 457 |||||||||||||||||||| Sbjct: 132331 caccaccaccatcaccattt 132312
>gb|AC136972.3| Oryza sativa chromosome 3 BAC OSJNBb0007E22 genomic sequence, complete sequence Length = 184783 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 436 cgcaccaccaccatcaccat 455 |||||||||||||||||||| Sbjct: 138901 cgcaccaccaccatcaccat 138920
>gb|AC004485.2| Homo sapiens BAC clone CTB-118E13 from 7, complete sequence Length = 185516 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 272 tcccctaaggaggggaccta 291 |||||||||||||||||||| Sbjct: 78849 tcccctaaggaggggaccta 78868
>emb|AL591074.10| Human DNA sequence from clone XXyac-60D10 on chromosome 20 Contains the CST5 gene for cystatin D, the CST2 gene for cystatin SA, the CST1 gene for cystatin SN and the CSTP2 gene for cystatin pseudogene 2, complete sequence Length = 203076 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 438 caccaccaccatcaccattt 457 |||||||||||||||||||| Sbjct: 74381 caccaccaccatcaccattt 74400
>emb|AL354868.10| Human DNA sequence from clone RP11-339A7 on chromosome 6 Contains a ribosomal protein L21 (RPL21) pseudogene, complete sequence Length = 164018 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 524 atgttccatgaagctttggctgcc 547 ||||||||| |||||||||||||| Sbjct: 61955 atgttccattaagctttggctgcc 61932
>emb|CR382123.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome C of strain NRRL Y-1140 of Kluyveromyces lactis Length = 1753957 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 438 caccaccaccatcaccattt 457 |||||||||||||||||||| Sbjct: 867785 caccaccaccatcaccattt 867766
>emb|BX950851.1| Erwinia carotovora subsp. atroseptica SCRI1043, complete genome Length = 5064019 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 148 gattcaccgactcggtggca 167 |||||||||||||||||||| Sbjct: 2424476 gattcaccgactcggtggca 2424457
>emb|AL031180.3|SPUNK4 S.pombe chromosome I cosmid c2E11 Length = 31812 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 250 ggccgcgtcaggcgccttag 269 |||||||||||||||||||| Sbjct: 15645 ggccgcgtcaggcgccttag 15626
>emb|AJ242589.1|PFA242589 Plasmodium falciparum sub-1 gene for subtilisin-like protease PfSUB-1 and his tag Length = 2088 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 437 gcaccaccaccatcaccatt 456 |||||||||||||||||||| Sbjct: 2067 gcaccaccaccatcaccatt 2086
>emb|AL683843.9| Mouse DNA sequence from clone RP23-217E1 on chromosome 11 Contains part of the Ranbp17 gene for RAN binding protein 17, an acidic (leucine-rich) nuclear phosphoprotein 32 family, member E (Anp32e) pseudogene and a high mobility group box 1 (Hmgb1) pseudogene, complete sequence Length = 198926 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 440 ccaccaccatcaccatttga 459 |||||||||||||||||||| Sbjct: 23126 ccaccaccatcaccatttga 23145
>gb|BC040984.1| Homo sapiens cDNA clone IMAGE:4801412 Length = 1785 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 438 caccaccaccatcaccattt 457 |||||||||||||||||||| Sbjct: 993 caccaccaccatcaccattt 974
>gb|AC092305.2| Homo sapiens chromosome 19 clone LLNLR-229B1, complete sequence Length = 35935 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 438 caccaccaccatcaccattt 457 |||||||||||||||||||| Sbjct: 21109 caccaccaccatcaccattt 21128
>ref|NM_001019392.1| Schizosaccharomyces pombe 972h- hypothetical protein (SPACUNK4.13c), partial mRNA Length = 1224 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 250 ggccgcgtcaggcgccttag 269 |||||||||||||||||||| Sbjct: 1047 ggccgcgtcaggcgccttag 1028
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 436 cgcaccaccaccatcaccat 455 |||||||||||||||||||| Sbjct: 22929399 cgcaccaccaccatcaccat 22929418
>gb|AC010606.7| Homo sapiens chromosome 19 clone CTB-25J19, complete sequence Length = 105940 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 438 caccaccaccatcaccattt 457 |||||||||||||||||||| Sbjct: 30855 caccaccaccatcaccattt 30836
>gb|AC015979.4|AC015979 Homo sapiens BAC clone RP11-538M13 from Y, complete sequence Length = 22212 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 438 caccaccaccatcaccattt 457 |||||||||||||||||||| Sbjct: 2544 caccaccaccatcaccattt 2525
>gb|AC105109.10| Homo sapiens chromosome 15, clone CTD-2343P13, complete sequence Length = 76158 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 438 caccaccaccatcaccattt 457 |||||||||||||||||||| Sbjct: 63 caccaccaccatcaccattt 82
>gb|AC104020.10| Homo sapiens chromosome 15, clone RP11-369K8, complete sequence Length = 171307 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 438 caccaccaccatcaccattt 457 |||||||||||||||||||| Sbjct: 126873 caccaccaccatcaccattt 126892
>dbj|AB084868.1| Schizosaccharomyces pombe poly A-bearing RNA without long open reading frames, clone:prl56 Length = 1055 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 250 ggccgcgtcaggcgccttag 269 |||||||||||||||||||| Sbjct: 182 ggccgcgtcaggcgccttag 201
>gb|AE015451.1| Pseudomonas putida KT2440 complete genome Length = 6181863 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 50 caactgattcaggcgcaggc 69 |||||||||||||||||||| Sbjct: 4951914 caactgattcaggcgcaggc 4951895
>gb|BC084233.1| Xenopus laevis hypothetical LOC495070, mRNA (cDNA clone MGC:81542 IMAGE:6862770), complete cds Length = 2347 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 264 ccttagcgtcccctaaggag 283 |||||||||||||||||||| Sbjct: 1085 ccttagcgtcccctaaggag 1066
>emb|AL954769.9| Zebrafish DNA sequence from clone CH211-262A21 in linkage group 7, complete sequence Length = 145555 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 438 caccaccaccatcaccattt 457 |||||||||||||||||||| Sbjct: 5438 caccaccaccatcaccattt 5419
>emb|AL683810.10| Mouse DNA sequence from clone RP23-10L18 on chromosome 2, complete sequence Length = 186882 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 437 gcaccaccaccatcaccatt 456 |||||||||||||||||||| Sbjct: 35820 gcaccaccaccatcaccatt 35839
>emb|AL671492.12| Mouse DNA sequence from clone RP23-286H11 on chromosome X, complete sequence Length = 202638 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 436 cgcaccaccaccatcaccat 455 |||||||||||||||||||| Sbjct: 126604 cgcaccaccaccatcaccat 126585
>emb|AL732428.7| Mouse DNA sequence from clone RP23-347P2 on chromosome 2, complete sequence Length = 123627 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 437 gcaccaccaccatcaccatt 456 |||||||||||||||||||| Sbjct: 71474 gcaccaccaccatcaccatt 71455 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,966,504 Number of Sequences: 3902068 Number of extensions: 3966504 Number of successful extensions: 103030 Number of sequences better than 10.0: 46 Number of HSP's better than 10.0 without gapping: 46 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 102666 Number of HSP's gapped (non-prelim): 360 length of query: 598 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 575 effective length of database: 17,143,297,704 effective search space: 9857396179800 effective search space used: 9857396179800 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
