Clone Name | basd2h22 |
---|---|
Clone Library Name | barley_pub |
>emb|BX322614.3| Zebrafish DNA sequence from clone CH211-215G1 in linkage group 16, complete sequence Length = 199783 Score = 44.1 bits (22), Expect = 0.53 Identities = 25/26 (96%) Strand = Plus / Minus Query: 551 gtcatggtgattagtaagtagatgga 576 ||||||||||||||||| |||||||| Sbjct: 18584 gtcatggtgattagtaaatagatgga 18559
>gb|AC147679.13| Canis Familiaris, clone XX-10F3, complete sequence Length = 193944 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 555 tggtgattagtaagtagatggatg 578 ||||||| |||||||||||||||| Sbjct: 64059 tggtgatgagtaagtagatggatg 64082
>gb|AC105256.7| Mus musculus BAC clone RP23-413O13 from chromosome 8, complete sequence Length = 210086 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 528 ttgtaaaccttgtatttgca 547 |||||||||||||||||||| Sbjct: 112000 ttgtaaaccttgtatttgca 112019
>gb|AY150217.1| Ambystoma tigrinum stebbensi virus, complete genome Length = 106332 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 483 tagagaaggccgcttccatt 502 |||||||||||||||||||| Sbjct: 46477 tagagaaggccgcttccatt 46458
>gb|AY166971.1|AY166970S02 Homo sapiens carbamoylphosphate synthetase (CPSI) gene, exon 2; nuclear gene for mitochondrial product Length = 324 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 131 ctgaagaaacacgttgcatg 150 |||||||||||||||||||| Sbjct: 114 ctgaagaaacacgttgcatg 95
>emb|BX294100.11| Zebrafish DNA sequence from clone DKEYP-2G11 in linkage group 12, complete sequence Length = 173405 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 293 gtgtggcaagtggctgtgta 312 |||||||||||||||||||| Sbjct: 49767 gtgtggcaagtggctgtgta 49748
>emb|BX571714.7| Zebrafish DNA sequence from clone DKEY-16L2 in linkage group 3, complete sequence Length = 240105 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 249 gtattcacagtcattcaacaacaa 272 ||||||||| |||||||||||||| Sbjct: 63420 gtattcacaatcattcaacaacaa 63443
>gb|AC104982.7| Homo sapiens chromosome 17, clone RP11-338L22, complete sequence Length = 164107 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 122 ctccaggcactgaagaaaca 141 |||||||||||||||||||| Sbjct: 32861 ctccaggcactgaagaaaca 32880
>emb|BX511164.11| Zebrafish DNA sequence from clone DKEY-63J1 in linkage group 19, complete sequence Length = 214001 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 130 actgaagaaacacgttgcat 149 |||||||||||||||||||| Sbjct: 141812 actgaagaaacacgttgcat 141793 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 130 actgaagaaacacgttgcat 149 |||||||||||||||||||| Sbjct: 138027 actgaagaaacacgttgcat 138008
>gb|AC153820.4| Mus musculus 6 BAC RP23-459L15 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 180996 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 300 aagtggctgtgtaggtcctgtgat 323 |||||||| ||||||||||||||| Sbjct: 130382 aagtggctttgtaggtcctgtgat 130405
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 548 tgagtcatggtgattagtaa 567 |||||||||||||||||||| Sbjct: 7984786 tgagtcatggtgattagtaa 7984767
>gb|AC157213.2| Mus musculus BAC clone RP23-157N5 from chromosome 12, complete sequence Length = 211304 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 4 tgctcccacatcaacttcct 23 |||||||||||||||||||| Sbjct: 119672 tgctcccacatcaacttcct 119653
>dbj|AP003196.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1008C01 Length = 144141 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 548 tgagtcatggtgattagtaa 567 |||||||||||||||||||| Sbjct: 91098 tgagtcatggtgattagtaa 91079
>emb|BX005142.4| Zebrafish DNA sequence from clone CH211-129K16 in linkage group 3, complete sequence Length = 170200 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 249 gtattcacagtcattcaacaacaa 272 ||||||||| |||||||||||||| Sbjct: 147990 gtattcacaatcattcaacaacaa 148013
>gb|AC024913.33| Mus musculus BAC Clone 402k12 RPCI-23, complete sequence Length = 197831 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 300 aagtggctgtgtaggtcctgtgat 323 |||||||| ||||||||||||||| Sbjct: 12146 aagtggctttgtaggtcctgtgat 12123 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,342,765 Number of Sequences: 3902068 Number of extensions: 4342765 Number of successful extensions: 72611 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 15 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 72565 Number of HSP's gapped (non-prelim): 46 length of query: 610 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 587 effective length of database: 17,143,297,704 effective search space: 10063115752248 effective search space used: 10063115752248 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)