ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd2h21
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CY561_PONPY (Q5RCZ2) Cytochrome b561 (Cytochrome b-561) 94 2e-19
2CY561_HUMAN (P49447) Cytochrome b561 (Cytochrome b-561) 93 4e-19
3CY561_PIG (Q95245) Cytochrome b561 (Cytochrome b-561) 93 4e-19
4CY561_BOVIN (P10897) Cytochrome b561 (Cytochrome b-561) 93 4e-19
5CY561_SHEEP (Q95204) Cytochrome b561 (Cytochrome b-561) 92 5e-19
6CY561_MOUSE (Q60720) Cytochrome b561 (Cytochrome b-561) 92 8e-19
7CY561_XENLA (Q91577) Cytochrome b561 (Cytochrome b-561) 86 5e-17
8CY561_CAEEL (P34465) Putative cytochrome b561 (Cytochrome b-561) 72 7e-13
9C56D2_HUMAN (O14569) Cytochrome b561 domain-containing protein 2... 41 0.001
10C56D1_HUMAN (Q8N8Q1) Cytochrome b561 domain-containing protein 1 40 0.004
11C56D2_RAT (Q641Y1) Cytochrome b561 domain-containing protein 2 40 0.004
12C56D2_MOUSE (Q9WUE3) Cytochrome b561 domain-containing protein 2... 40 0.004
13C56D2_BOVIN (Q5E965) Cytochrome b561 domain-containing protein 2 40 0.004
14PTTBC_ECOLI (P36672) PTS system trehalose-specific EIIBC compone... 32 1.0
15YRN9_CAEEL (Q09609) Hypothetical protein R07B1.9 31 1.3
16RPOC_TREDE (Q73JJ8) DNA-directed RNA polymerase beta' chain (EC ... 29 5.0
17MCL1_SCHPO (Q9C107) Minichromosome loss protein 1 29 5.0
18HSP42_YEAST (Q12329) Heat shock protein 42 (42 kDa heat shock pr... 29 5.0
19MIP1_SCHPO (P87141) WD-repeat protein mip1 28 8.6
20CKLF7_HUMAN (Q96FZ5) CKLF-like MARVEL transmembrane domain-conta... 28 8.6
21Y2119_MYCPA (Q73Y38) Hypothetical UPF0324 membrane protein MAP_2119 28 8.6

>CY561_PONPY (Q5RCZ2) Cytochrome b561 (Cytochrome b-561)|
          Length = 251

 Score = 93.6 bits (231), Expect = 2e-19
 Identities = 47/102 (46%), Positives = 64/102 (62%)
 Frame = +1

Query: 85  WCIHFRGGLAFEADNKNLIFNVHPVLMLIGFIILGSEAIMVYKVLPTVNHDTTKLIHLVL 264
           W   +RGG+A+E+D   L FN HP+ M+IG I L  +A++VY+V       TTK++H +L
Sbjct: 34  WLGLYRGGIAWESD---LQFNAHPLCMVIGLIFLQGDALLVYRVFRNEAKRTTKVLHGLL 90

Query: 265 HAIALVLGAVGIYCAFKNHNETGIANLYSLHSWLGIGTISLY 390
           H  ALV+  VG+   F  H + G A+LYSLHSW GI    LY
Sbjct: 91  HIFALVIALVGLVAVFDYHRKEGYADLYSLHSWCGILVFVLY 132



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>CY561_HUMAN (P49447) Cytochrome b561 (Cytochrome b-561)|
          Length = 251

 Score = 92.8 bits (229), Expect = 4e-19
 Identities = 47/102 (46%), Positives = 63/102 (61%)
 Frame = +1

Query: 85  WCIHFRGGLAFEADNKNLIFNVHPVLMLIGFIILGSEAIMVYKVLPTVNHDTTKLIHLVL 264
           W   +RGG+A+E+D   L FN HP+ M+IG I L   A++VY+V       TTK++H +L
Sbjct: 34  WLGLYRGGIAWESD---LQFNAHPLCMVIGLIFLQGNALLVYRVFRNEAKRTTKVLHGLL 90

Query: 265 HAIALVLGAVGIYCAFKNHNETGIANLYSLHSWLGIGTISLY 390
           H  ALV+  VG+   F  H + G A+LYSLHSW GI    LY
Sbjct: 91  HIFALVIALVGLVAVFDYHRKKGYADLYSLHSWCGILVFVLY 132



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>CY561_PIG (Q95245) Cytochrome b561 (Cytochrome b-561)|
          Length = 252

 Score = 92.8 bits (229), Expect = 4e-19
 Identities = 45/102 (44%), Positives = 65/102 (63%)
 Frame = +1

Query: 85  WCIHFRGGLAFEADNKNLIFNVHPVLMLIGFIILGSEAIMVYKVLPTVNHDTTKLIHLVL 264
           W   +RGG+A+E+    L FNVHP+ M+IG + L  +A++VY+V       TTK++H +L
Sbjct: 35  WLGAYRGGIAWESA---LQFNVHPLCMIIGLVFLQGDALLVYRVFRNEAKRTTKILHGLL 91

Query: 265 HAIALVLGAVGIYCAFKNHNETGIANLYSLHSWLGIGTISLY 390
           H +A V+  VG+   F  H + GIA+LYSLHSW GI    L+
Sbjct: 92  HVLAFVIALVGLVAVFDYHRKKGIADLYSLHSWCGILVFVLF 133



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>CY561_BOVIN (P10897) Cytochrome b561 (Cytochrome b-561)|
          Length = 252

 Score = 92.8 bits (229), Expect = 4e-19
 Identities = 44/102 (43%), Positives = 66/102 (64%)
 Frame = +1

Query: 85  WCIHFRGGLAFEADNKNLIFNVHPVLMLIGFIILGSEAIMVYKVLPTVNHDTTKLIHLVL 264
           W   +RGG+A+E+    L FNVHP+ M+IG + L  +A++VY+V       TTK++H +L
Sbjct: 35  WLGMYRGGIAWESA---LQFNVHPLCMIIGLVFLQGDALLVYRVFRNEAKRTTKVLHGLL 91

Query: 265 HAIALVLGAVGIYCAFKNHNETGIANLYSLHSWLGIGTISLY 390
           H  A V+  VG+   F++H + G A+LYSLHSW GI   +L+
Sbjct: 92  HVFAFVIALVGLVAVFEHHRKKGYADLYSLHSWCGILVFALF 133



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>CY561_SHEEP (Q95204) Cytochrome b561 (Cytochrome b-561)|
          Length = 252

 Score = 92.4 bits (228), Expect = 5e-19
 Identities = 44/102 (43%), Positives = 66/102 (64%)
 Frame = +1

Query: 85  WCIHFRGGLAFEADNKNLIFNVHPVLMLIGFIILGSEAIMVYKVLPTVNHDTTKLIHLVL 264
           W   +RGG+A+E+    L FNVHP+ M+IG + L  +A++VY+V       TTK++H +L
Sbjct: 35  WLGMYRGGIAWESA---LQFNVHPLCMVIGLVFLQGDALLVYRVFRNEAKRTTKVLHGLL 91

Query: 265 HAIALVLGAVGIYCAFKNHNETGIANLYSLHSWLGIGTISLY 390
           H  A V+  VG+   F++H + G A+LYSLHSW GI   +L+
Sbjct: 92  HVFAFVIALVGLVAVFEHHRKKGYADLYSLHSWCGILVFALF 133



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>CY561_MOUSE (Q60720) Cytochrome b561 (Cytochrome b-561)|
          Length = 250

 Score = 91.7 bits (226), Expect = 8e-19
 Identities = 45/102 (44%), Positives = 64/102 (62%)
 Frame = +1

Query: 85  WCIHFRGGLAFEADNKNLIFNVHPVLMLIGFIILGSEAIMVYKVLPTVNHDTTKLIHLVL 264
           W   +RGG+A+E+   +L FNVHP+ M+IG I L  +A++VY+V       TTK++H +L
Sbjct: 33  WLGLYRGGIAWES---SLQFNVHPLCMVIGMIFLQGDALLVYRVFRREAKRTTKILHGLL 89

Query: 265 HAIALVLGAVGIYCAFKNHNETGIANLYSLHSWLGIGTISLY 390
           H  A ++  VG+   F  H + G A+LYSLHSW GI    LY
Sbjct: 90  HVFAFIIALVGLVAVFDYHKKKGYADLYSLHSWCGILVFVLY 131



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>CY561_XENLA (Q91577) Cytochrome b561 (Cytochrome b-561)|
          Length = 247

 Score = 85.9 bits (211), Expect = 5e-17
 Identities = 39/85 (45%), Positives = 56/85 (65%)
 Frame = +1

Query: 136 LIFNVHPVLMLIGFIILGSEAIMVYKVLPTVNHDTTKLIHLVLHAIALVLGAVGIYCAFK 315
           L FNVHP+ M++G + L  EA++VY+V       +TK++H VLH +ALV+  VG+   F+
Sbjct: 48  LQFNVHPLCMVLGMVFLCGEALLVYRVFRHETKRSTKILHGVLHIMALVISLVGVIAVFQ 107

Query: 316 NHNETGIANLYSLHSWLGIGTISLY 390
            H   G  ++YSLHSW GI T +LY
Sbjct: 108 YHQANGYPDMYSLHSWCGIVTFTLY 132



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>CY561_CAEEL (P34465) Putative cytochrome b561 (Cytochrome b-561)|
          Length = 266

 Score = 72.0 bits (175), Expect = 7e-13
 Identities = 37/110 (33%), Positives = 55/110 (50%), Gaps = 8/110 (7%)
 Frame = +1

Query: 85  WCIHFRGGLAFEADNKNLIFNVHPVLMLIGFIILGSEAIMVYKVLPTVNHDTTKLIHLVL 264
           W   F  G A+  D  +  FN HP  M++G + L  EA++VY+V        +K +H++L
Sbjct: 42  WMSKFESGFAWNED-PDKEFNYHPTFMIMGMVFLFGEALLVYRVFRNERKKFSKTLHVIL 100

Query: 265 HAIALVLGAVGIYCAFKNH--------NETGIANLYSLHSWLGIGTISLY 390
           H+  LV   + +   F  H        N   I NL SLHSW+G+  + LY
Sbjct: 101 HSCVLVFMLMALKAVFDYHNLHKDPSGNPAPIVNLVSLHSWIGLSVVILY 150



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>C56D2_HUMAN (O14569) Cytochrome b561 domain-containing protein 2 (Putative|
           tumor suppressor protein 101F6)
          Length = 222

 Score = 41.2 bits (95), Expect = 0.001
 Identities = 24/90 (26%), Positives = 46/90 (51%), Gaps = 4/90 (4%)
 Frame = +1

Query: 139 IFNVHPVLMLIGFIILGSEAIMVYKVLPTVNHDTTK----LIHLVLHAIALVLGAVGIYC 306
           +F+ HPVLM + F  L +EA++V+    ++ H  ++      H VL  +AL+   +G+  
Sbjct: 44  LFSWHPVLMSLAFSFLMTEALLVFSPESSLLHSLSRKGRARCHWVLQLLALLCALLGLGL 103

Query: 307 AFKNHNETGIANLYSLHSWLGIGTISLYGI 396
              +  + G A+L + H   G+  +   G+
Sbjct: 104 VILHKEQLGKAHLVTRHGQAGLLAVLWAGL 133



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>C56D1_HUMAN (Q8N8Q1) Cytochrome b561 domain-containing protein 1|
          Length = 229

 Score = 39.7 bits (91), Expect = 0.004
 Identities = 21/85 (24%), Positives = 45/85 (52%), Gaps = 4/85 (4%)
 Frame = +1

Query: 139 IFNVHPVLMLIGFIILGSEAIMVYKVLPTVNHDTTKLIHLVLH----AIALVLGAVGIYC 306
           +F+ HPV M + F +  +EAI+++    ++    ++   + LH     +A++  A+G+  
Sbjct: 51  LFSWHPVFMALAFCLCMAEAILLFSPEHSLFFFCSRKARIRLHWAGQTLAILCAALGLGF 110

Query: 307 AFKNHNETGIANLYSLHSWLGIGTI 381
              +   + + +L S HSW+G  T+
Sbjct: 111 IISSRTRSELPHLVSWHSWVGALTL 135



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>C56D2_RAT (Q641Y1) Cytochrome b561 domain-containing protein 2|
          Length = 222

 Score = 39.7 bits (91), Expect = 0.004
 Identities = 23/90 (25%), Positives = 46/90 (51%), Gaps = 4/90 (4%)
 Frame = +1

Query: 139 IFNVHPVLMLIGFIILGSEAIMVY----KVLPTVNHDTTKLIHLVLHAIALVLGAVGIYC 306
           +F+ HPVLM + F  L +EA++++     +L +++       H VL  +AL+   +G+  
Sbjct: 44  LFSWHPVLMSLAFSFLMTEALLMFSPESSLLRSLSRKVRARCHWVLQLLALLCALLGLGL 103

Query: 307 AFKNHNETGIANLYSLHSWLGIGTISLYGI 396
              +  + G A+L + H   G+  +   G+
Sbjct: 104 VILHKEQLGKAHLATRHGQAGLLAVLWAGL 133



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>C56D2_MOUSE (Q9WUE3) Cytochrome b561 domain-containing protein 2 (Putative|
           tumor suppressor protein 101F6)
          Length = 222

 Score = 39.7 bits (91), Expect = 0.004
 Identities = 23/90 (25%), Positives = 46/90 (51%), Gaps = 4/90 (4%)
 Frame = +1

Query: 139 IFNVHPVLMLIGFIILGSEAIMVY----KVLPTVNHDTTKLIHLVLHAIALVLGAVGIYC 306
           +F+ HPVLM + F  L +EA++++     +L +++       H VL  +AL+   +G+  
Sbjct: 44  LFSWHPVLMSLAFSFLMTEALLMFSPESSLLRSLSRKVRARCHWVLQLLALLCALLGLGL 103

Query: 307 AFKNHNETGIANLYSLHSWLGIGTISLYGI 396
              +  + G A+L + H   G+  +   G+
Sbjct: 104 VILHKEQLGKAHLTTRHGQAGLLAVLWAGL 133



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>C56D2_BOVIN (Q5E965) Cytochrome b561 domain-containing protein 2|
          Length = 222

 Score = 39.7 bits (91), Expect = 0.004
 Identities = 24/90 (26%), Positives = 46/90 (51%), Gaps = 4/90 (4%)
 Frame = +1

Query: 139 IFNVHPVLMLIGFIILGSEAIMVY----KVLPTVNHDTTKLIHLVLHAIALVLGAVGIYC 306
           +F+ HPVLM + F  L +EA++V+     +L +++       H VL  +AL+   +G+  
Sbjct: 44  LFSWHPVLMSLAFSFLMTEALLVFSPESSLLRSLSRKGRARCHWVLQLLALLCALLGLGL 103

Query: 307 AFKNHNETGIANLYSLHSWLGIGTISLYGI 396
              +  + G A+L + H   G+  +   G+
Sbjct: 104 VILHKEQLGKAHLATWHGRAGLLAVLWAGL 133



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>PTTBC_ECOLI (P36672) PTS system trehalose-specific EIIBC component (EIIBC-Tre)|
           (EII-Tre) [Includes: Trehalose-specific
           phosphotransferase enzyme IIB component (EC 2.7.1.69)
           (PTS system trehalose-specific EIIB component);
           Trehalose permease IIC component
          Length = 473

 Score = 31.6 bits (70), Expect = 1.0
 Identities = 15/47 (31%), Positives = 26/47 (55%)
 Frame = +1

Query: 256 LVLHAIALVLGAVGIYCAFKNHNETGIANLYSLHSWLGIGTISLYGI 396
           + L  IA     +GI  + + HNE  I+   ++ +WLG+   ++YGI
Sbjct: 345 IALSNIAQGSAVIGIIISSRKHNEREISVPAAISAWLGVTEPAMYGI 391



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>YRN9_CAEEL (Q09609) Hypothetical protein R07B1.9|
          Length = 770

 Score = 31.2 bits (69), Expect = 1.3
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +1

Query: 259 VLHAIALVLGAVGIYCAFKNHNETGIANLYSLHSWLGIGTISLYG 393
           +L+ I +V G +G Y  ++NH      +LY +   +G  T   YG
Sbjct: 48  LLNFIHVVTGCIGFYSLWRNHGSIVTKSLYLVSFVIGFATAVFYG 92



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>RPOC_TREDE (Q73JJ8) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP|
            beta' subunit) (Transcriptase beta' chain) (RNA
            polymerase beta' subunit)
          Length = 1424

 Score = 29.3 bits (64), Expect = 5.0
 Identities = 14/42 (33%), Positives = 25/42 (59%)
 Frame = -3

Query: 426  KKVKNPNIPLNTI*RNCSYSKPRMQTVQVRNSSFIVILESTV 301
            K+V + NI +  +  N  Y   + QT+++RN S +V+ E+ V
Sbjct: 989  KEVLSENIAIAEVRDNIIYLTGQEQTIEIRNGSEVVVKENDV 1030



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>MCL1_SCHPO (Q9C107) Minichromosome loss protein 1|
          Length = 815

 Score = 29.3 bits (64), Expect = 5.0
 Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
 Frame = -3

Query: 405 IPLNTI*RNCSYSKPRMQTVQVRNSSFIVILESTVYP-DRTEHKRNSM 265
           IP NT   + S S P ++ +Q+RN  F+ +LE ++   D TE ++ S+
Sbjct: 702 IPCNTNNPDASTSVPVLEELQLRNKLFLTLLEDSIGDGDVTEDEKISI 749



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>HSP42_YEAST (Q12329) Heat shock protein 42 (42 kDa heat shock protein)|
          Length = 375

 Score = 29.3 bits (64), Expect = 5.0
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -3

Query: 222 RKYLVYHYSFTAKNNKANQHKNRMN 148
           R+Y  Y++  TA+NN+ NQ  N +N
Sbjct: 119 RRYPSYYHCNTARNNRTNQQANSLN 143



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>MIP1_SCHPO (P87141) WD-repeat protein mip1|
          Length = 1313

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = +1

Query: 247 LIHLVLHAIALVLGAVGIYCAFKNHNETGIANLYSLHSWLGIGTISLY 390
           L H   H + +   +  I+   KN+ +    +LY L SWLG   I +Y
Sbjct: 206 LFHYNGHGVPMPTASGEIWVFNKNYTQYIPVSLYDLQSWLGAPCIYVY 253



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>CKLF7_HUMAN (Q96FZ5) CKLF-like MARVEL transmembrane domain-containing protein 7|
           (Chemokine-like factor superfamily member 7)
          Length = 175

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 13/66 (19%), Positives = 38/66 (57%)
 Frame = +1

Query: 139 IFNVHPVLMLIGFIILGSEAIMVYKVLPTVNHDTTKLIHLVLHAIALVLGAVGIYCAFKN 318
           +  +  ++M++ F ++       Y+VL  ++   ++L+H ++  + L++ +  I  A K+
Sbjct: 79  VVTICDLIMILAFYLV--HLFRFYRVLTCISWPLSELLHYLIGTLLLLIAS--IVAASKS 134

Query: 319 HNETGI 336
           +N++G+
Sbjct: 135 YNQSGL 140



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>Y2119_MYCPA (Q73Y38) Hypothetical UPF0324 membrane protein MAP_2119|
          Length = 412

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 3/80 (3%)
 Frame = +1

Query: 157 VLMLIGFIILGSEAIMVYKVLPTVNHDTTKLIHLVLHAIAL---VLGAVGIYCAFKNHNE 327
           +L+LIG  +LG  A + +  L    H T   I  VL AI +   +   VG++  F+    
Sbjct: 69  ILLLIGVGVLGKYAQIWWNALAKHEHWTVPDIEYVLWAIVIGLVITNTVGLHPIFR---- 124

Query: 328 TGIANLYSLHSWLGIGTISL 387
                + +   WL  G ++L
Sbjct: 125 ---PGVLTYEFWLKAGIVAL 141


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,494,777
Number of Sequences: 219361
Number of extensions: 948649
Number of successful extensions: 2538
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 2509
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2535
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2909956200
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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