ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd2h21 |
|---|---|
| Clone Library Name | barley_pub |
>CY561_PONPY (Q5RCZ2) Cytochrome b561 (Cytochrome b-561)| Length = 251 Score = 93.6 bits (231), Expect = 2e-19 Identities = 47/102 (46%), Positives = 64/102 (62%) Frame = +1 Query: 85 WCIHFRGGLAFEADNKNLIFNVHPVLMLIGFIILGSEAIMVYKVLPTVNHDTTKLIHLVL 264 W +RGG+A+E+D L FN HP+ M+IG I L +A++VY+V TTK++H +L Sbjct: 34 WLGLYRGGIAWESD---LQFNAHPLCMVIGLIFLQGDALLVYRVFRNEAKRTTKVLHGLL 90 Query: 265 HAIALVLGAVGIYCAFKNHNETGIANLYSLHSWLGIGTISLY 390 H ALV+ VG+ F H + G A+LYSLHSW GI LY Sbjct: 91 HIFALVIALVGLVAVFDYHRKEGYADLYSLHSWCGILVFVLY 132
>CY561_HUMAN (P49447) Cytochrome b561 (Cytochrome b-561)| Length = 251 Score = 92.8 bits (229), Expect = 4e-19 Identities = 47/102 (46%), Positives = 63/102 (61%) Frame = +1 Query: 85 WCIHFRGGLAFEADNKNLIFNVHPVLMLIGFIILGSEAIMVYKVLPTVNHDTTKLIHLVL 264 W +RGG+A+E+D L FN HP+ M+IG I L A++VY+V TTK++H +L Sbjct: 34 WLGLYRGGIAWESD---LQFNAHPLCMVIGLIFLQGNALLVYRVFRNEAKRTTKVLHGLL 90 Query: 265 HAIALVLGAVGIYCAFKNHNETGIANLYSLHSWLGIGTISLY 390 H ALV+ VG+ F H + G A+LYSLHSW GI LY Sbjct: 91 HIFALVIALVGLVAVFDYHRKKGYADLYSLHSWCGILVFVLY 132
>CY561_PIG (Q95245) Cytochrome b561 (Cytochrome b-561)| Length = 252 Score = 92.8 bits (229), Expect = 4e-19 Identities = 45/102 (44%), Positives = 65/102 (63%) Frame = +1 Query: 85 WCIHFRGGLAFEADNKNLIFNVHPVLMLIGFIILGSEAIMVYKVLPTVNHDTTKLIHLVL 264 W +RGG+A+E+ L FNVHP+ M+IG + L +A++VY+V TTK++H +L Sbjct: 35 WLGAYRGGIAWESA---LQFNVHPLCMIIGLVFLQGDALLVYRVFRNEAKRTTKILHGLL 91 Query: 265 HAIALVLGAVGIYCAFKNHNETGIANLYSLHSWLGIGTISLY 390 H +A V+ VG+ F H + GIA+LYSLHSW GI L+ Sbjct: 92 HVLAFVIALVGLVAVFDYHRKKGIADLYSLHSWCGILVFVLF 133
>CY561_BOVIN (P10897) Cytochrome b561 (Cytochrome b-561)| Length = 252 Score = 92.8 bits (229), Expect = 4e-19 Identities = 44/102 (43%), Positives = 66/102 (64%) Frame = +1 Query: 85 WCIHFRGGLAFEADNKNLIFNVHPVLMLIGFIILGSEAIMVYKVLPTVNHDTTKLIHLVL 264 W +RGG+A+E+ L FNVHP+ M+IG + L +A++VY+V TTK++H +L Sbjct: 35 WLGMYRGGIAWESA---LQFNVHPLCMIIGLVFLQGDALLVYRVFRNEAKRTTKVLHGLL 91 Query: 265 HAIALVLGAVGIYCAFKNHNETGIANLYSLHSWLGIGTISLY 390 H A V+ VG+ F++H + G A+LYSLHSW GI +L+ Sbjct: 92 HVFAFVIALVGLVAVFEHHRKKGYADLYSLHSWCGILVFALF 133
>CY561_SHEEP (Q95204) Cytochrome b561 (Cytochrome b-561)| Length = 252 Score = 92.4 bits (228), Expect = 5e-19 Identities = 44/102 (43%), Positives = 66/102 (64%) Frame = +1 Query: 85 WCIHFRGGLAFEADNKNLIFNVHPVLMLIGFIILGSEAIMVYKVLPTVNHDTTKLIHLVL 264 W +RGG+A+E+ L FNVHP+ M+IG + L +A++VY+V TTK++H +L Sbjct: 35 WLGMYRGGIAWESA---LQFNVHPLCMVIGLVFLQGDALLVYRVFRNEAKRTTKVLHGLL 91 Query: 265 HAIALVLGAVGIYCAFKNHNETGIANLYSLHSWLGIGTISLY 390 H A V+ VG+ F++H + G A+LYSLHSW GI +L+ Sbjct: 92 HVFAFVIALVGLVAVFEHHRKKGYADLYSLHSWCGILVFALF 133
>CY561_MOUSE (Q60720) Cytochrome b561 (Cytochrome b-561)| Length = 250 Score = 91.7 bits (226), Expect = 8e-19 Identities = 45/102 (44%), Positives = 64/102 (62%) Frame = +1 Query: 85 WCIHFRGGLAFEADNKNLIFNVHPVLMLIGFIILGSEAIMVYKVLPTVNHDTTKLIHLVL 264 W +RGG+A+E+ +L FNVHP+ M+IG I L +A++VY+V TTK++H +L Sbjct: 33 WLGLYRGGIAWES---SLQFNVHPLCMVIGMIFLQGDALLVYRVFRREAKRTTKILHGLL 89 Query: 265 HAIALVLGAVGIYCAFKNHNETGIANLYSLHSWLGIGTISLY 390 H A ++ VG+ F H + G A+LYSLHSW GI LY Sbjct: 90 HVFAFIIALVGLVAVFDYHKKKGYADLYSLHSWCGILVFVLY 131
>CY561_XENLA (Q91577) Cytochrome b561 (Cytochrome b-561)| Length = 247 Score = 85.9 bits (211), Expect = 5e-17 Identities = 39/85 (45%), Positives = 56/85 (65%) Frame = +1 Query: 136 LIFNVHPVLMLIGFIILGSEAIMVYKVLPTVNHDTTKLIHLVLHAIALVLGAVGIYCAFK 315 L FNVHP+ M++G + L EA++VY+V +TK++H VLH +ALV+ VG+ F+ Sbjct: 48 LQFNVHPLCMVLGMVFLCGEALLVYRVFRHETKRSTKILHGVLHIMALVISLVGVIAVFQ 107 Query: 316 NHNETGIANLYSLHSWLGIGTISLY 390 H G ++YSLHSW GI T +LY Sbjct: 108 YHQANGYPDMYSLHSWCGIVTFTLY 132
>CY561_CAEEL (P34465) Putative cytochrome b561 (Cytochrome b-561)| Length = 266 Score = 72.0 bits (175), Expect = 7e-13 Identities = 37/110 (33%), Positives = 55/110 (50%), Gaps = 8/110 (7%) Frame = +1 Query: 85 WCIHFRGGLAFEADNKNLIFNVHPVLMLIGFIILGSEAIMVYKVLPTVNHDTTKLIHLVL 264 W F G A+ D + FN HP M++G + L EA++VY+V +K +H++L Sbjct: 42 WMSKFESGFAWNED-PDKEFNYHPTFMIMGMVFLFGEALLVYRVFRNERKKFSKTLHVIL 100 Query: 265 HAIALVLGAVGIYCAFKNH--------NETGIANLYSLHSWLGIGTISLY 390 H+ LV + + F H N I NL SLHSW+G+ + LY Sbjct: 101 HSCVLVFMLMALKAVFDYHNLHKDPSGNPAPIVNLVSLHSWIGLSVVILY 150
>C56D2_HUMAN (O14569) Cytochrome b561 domain-containing protein 2 (Putative| tumor suppressor protein 101F6) Length = 222 Score = 41.2 bits (95), Expect = 0.001 Identities = 24/90 (26%), Positives = 46/90 (51%), Gaps = 4/90 (4%) Frame = +1 Query: 139 IFNVHPVLMLIGFIILGSEAIMVYKVLPTVNHDTTK----LIHLVLHAIALVLGAVGIYC 306 +F+ HPVLM + F L +EA++V+ ++ H ++ H VL +AL+ +G+ Sbjct: 44 LFSWHPVLMSLAFSFLMTEALLVFSPESSLLHSLSRKGRARCHWVLQLLALLCALLGLGL 103 Query: 307 AFKNHNETGIANLYSLHSWLGIGTISLYGI 396 + + G A+L + H G+ + G+ Sbjct: 104 VILHKEQLGKAHLVTRHGQAGLLAVLWAGL 133
>C56D1_HUMAN (Q8N8Q1) Cytochrome b561 domain-containing protein 1| Length = 229 Score = 39.7 bits (91), Expect = 0.004 Identities = 21/85 (24%), Positives = 45/85 (52%), Gaps = 4/85 (4%) Frame = +1 Query: 139 IFNVHPVLMLIGFIILGSEAIMVYKVLPTVNHDTTKLIHLVLH----AIALVLGAVGIYC 306 +F+ HPV M + F + +EAI+++ ++ ++ + LH +A++ A+G+ Sbjct: 51 LFSWHPVFMALAFCLCMAEAILLFSPEHSLFFFCSRKARIRLHWAGQTLAILCAALGLGF 110 Query: 307 AFKNHNETGIANLYSLHSWLGIGTI 381 + + + +L S HSW+G T+ Sbjct: 111 IISSRTRSELPHLVSWHSWVGALTL 135
>C56D2_RAT (Q641Y1) Cytochrome b561 domain-containing protein 2| Length = 222 Score = 39.7 bits (91), Expect = 0.004 Identities = 23/90 (25%), Positives = 46/90 (51%), Gaps = 4/90 (4%) Frame = +1 Query: 139 IFNVHPVLMLIGFIILGSEAIMVY----KVLPTVNHDTTKLIHLVLHAIALVLGAVGIYC 306 +F+ HPVLM + F L +EA++++ +L +++ H VL +AL+ +G+ Sbjct: 44 LFSWHPVLMSLAFSFLMTEALLMFSPESSLLRSLSRKVRARCHWVLQLLALLCALLGLGL 103 Query: 307 AFKNHNETGIANLYSLHSWLGIGTISLYGI 396 + + G A+L + H G+ + G+ Sbjct: 104 VILHKEQLGKAHLATRHGQAGLLAVLWAGL 133
>C56D2_MOUSE (Q9WUE3) Cytochrome b561 domain-containing protein 2 (Putative| tumor suppressor protein 101F6) Length = 222 Score = 39.7 bits (91), Expect = 0.004 Identities = 23/90 (25%), Positives = 46/90 (51%), Gaps = 4/90 (4%) Frame = +1 Query: 139 IFNVHPVLMLIGFIILGSEAIMVY----KVLPTVNHDTTKLIHLVLHAIALVLGAVGIYC 306 +F+ HPVLM + F L +EA++++ +L +++ H VL +AL+ +G+ Sbjct: 44 LFSWHPVLMSLAFSFLMTEALLMFSPESSLLRSLSRKVRARCHWVLQLLALLCALLGLGL 103 Query: 307 AFKNHNETGIANLYSLHSWLGIGTISLYGI 396 + + G A+L + H G+ + G+ Sbjct: 104 VILHKEQLGKAHLTTRHGQAGLLAVLWAGL 133
>C56D2_BOVIN (Q5E965) Cytochrome b561 domain-containing protein 2| Length = 222 Score = 39.7 bits (91), Expect = 0.004 Identities = 24/90 (26%), Positives = 46/90 (51%), Gaps = 4/90 (4%) Frame = +1 Query: 139 IFNVHPVLMLIGFIILGSEAIMVY----KVLPTVNHDTTKLIHLVLHAIALVLGAVGIYC 306 +F+ HPVLM + F L +EA++V+ +L +++ H VL +AL+ +G+ Sbjct: 44 LFSWHPVLMSLAFSFLMTEALLVFSPESSLLRSLSRKGRARCHWVLQLLALLCALLGLGL 103 Query: 307 AFKNHNETGIANLYSLHSWLGIGTISLYGI 396 + + G A+L + H G+ + G+ Sbjct: 104 VILHKEQLGKAHLATWHGRAGLLAVLWAGL 133
>PTTBC_ECOLI (P36672) PTS system trehalose-specific EIIBC component (EIIBC-Tre)| (EII-Tre) [Includes: Trehalose-specific phosphotransferase enzyme IIB component (EC 2.7.1.69) (PTS system trehalose-specific EIIB component); Trehalose permease IIC component Length = 473 Score = 31.6 bits (70), Expect = 1.0 Identities = 15/47 (31%), Positives = 26/47 (55%) Frame = +1 Query: 256 LVLHAIALVLGAVGIYCAFKNHNETGIANLYSLHSWLGIGTISLYGI 396 + L IA +GI + + HNE I+ ++ +WLG+ ++YGI Sbjct: 345 IALSNIAQGSAVIGIIISSRKHNEREISVPAAISAWLGVTEPAMYGI 391
>YRN9_CAEEL (Q09609) Hypothetical protein R07B1.9| Length = 770 Score = 31.2 bits (69), Expect = 1.3 Identities = 14/45 (31%), Positives = 23/45 (51%) Frame = +1 Query: 259 VLHAIALVLGAVGIYCAFKNHNETGIANLYSLHSWLGIGTISLYG 393 +L+ I +V G +G Y ++NH +LY + +G T YG Sbjct: 48 LLNFIHVVTGCIGFYSLWRNHGSIVTKSLYLVSFVIGFATAVFYG 92
>RPOC_TREDE (Q73JJ8) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1424 Score = 29.3 bits (64), Expect = 5.0 Identities = 14/42 (33%), Positives = 25/42 (59%) Frame = -3 Query: 426 KKVKNPNIPLNTI*RNCSYSKPRMQTVQVRNSSFIVILESTV 301 K+V + NI + + N Y + QT+++RN S +V+ E+ V Sbjct: 989 KEVLSENIAIAEVRDNIIYLTGQEQTIEIRNGSEVVVKENDV 1030
>MCL1_SCHPO (Q9C107) Minichromosome loss protein 1| Length = 815 Score = 29.3 bits (64), Expect = 5.0 Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 1/48 (2%) Frame = -3 Query: 405 IPLNTI*RNCSYSKPRMQTVQVRNSSFIVILESTVYP-DRTEHKRNSM 265 IP NT + S S P ++ +Q+RN F+ +LE ++ D TE ++ S+ Sbjct: 702 IPCNTNNPDASTSVPVLEELQLRNKLFLTLLEDSIGDGDVTEDEKISI 749
>HSP42_YEAST (Q12329) Heat shock protein 42 (42 kDa heat shock protein)| Length = 375 Score = 29.3 bits (64), Expect = 5.0 Identities = 11/25 (44%), Positives = 17/25 (68%) Frame = -3 Query: 222 RKYLVYHYSFTAKNNKANQHKNRMN 148 R+Y Y++ TA+NN+ NQ N +N Sbjct: 119 RRYPSYYHCNTARNNRTNQQANSLN 143
>MIP1_SCHPO (P87141) WD-repeat protein mip1| Length = 1313 Score = 28.5 bits (62), Expect = 8.6 Identities = 15/48 (31%), Positives = 23/48 (47%) Frame = +1 Query: 247 LIHLVLHAIALVLGAVGIYCAFKNHNETGIANLYSLHSWLGIGTISLY 390 L H H + + + I+ KN+ + +LY L SWLG I +Y Sbjct: 206 LFHYNGHGVPMPTASGEIWVFNKNYTQYIPVSLYDLQSWLGAPCIYVY 253
>CKLF7_HUMAN (Q96FZ5) CKLF-like MARVEL transmembrane domain-containing protein 7| (Chemokine-like factor superfamily member 7) Length = 175 Score = 28.5 bits (62), Expect = 8.6 Identities = 13/66 (19%), Positives = 38/66 (57%) Frame = +1 Query: 139 IFNVHPVLMLIGFIILGSEAIMVYKVLPTVNHDTTKLIHLVLHAIALVLGAVGIYCAFKN 318 + + ++M++ F ++ Y+VL ++ ++L+H ++ + L++ + I A K+ Sbjct: 79 VVTICDLIMILAFYLV--HLFRFYRVLTCISWPLSELLHYLIGTLLLLIAS--IVAASKS 134 Query: 319 HNETGI 336 +N++G+ Sbjct: 135 YNQSGL 140
>Y2119_MYCPA (Q73Y38) Hypothetical UPF0324 membrane protein MAP_2119| Length = 412 Score = 28.5 bits (62), Expect = 8.6 Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 3/80 (3%) Frame = +1 Query: 157 VLMLIGFIILGSEAIMVYKVLPTVNHDTTKLIHLVLHAIAL---VLGAVGIYCAFKNHNE 327 +L+LIG +LG A + + L H T I VL AI + + VG++ F+ Sbjct: 69 ILLLIGVGVLGKYAQIWWNALAKHEHWTVPDIEYVLWAIVIGLVITNTVGLHPIFR---- 124 Query: 328 TGIANLYSLHSWLGIGTISL 387 + + WL G ++L Sbjct: 125 ---PGVLTYEFWLKAGIVAL 141 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 51,494,777 Number of Sequences: 219361 Number of extensions: 948649 Number of successful extensions: 2538 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 2509 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2535 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2909956200 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
