Clone Name | basd2h16 |
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Clone Library Name | barley_pub |
No. | Definition | Score (bits) |
E Value |
1 | TAR1_YEAST (Q8TGM6) Protein TAR1 (Transcript antisense to riboso... | 43 | 7e-04 | 2 | TAR1_KLULA (Q6CQE5) Protein TAR1 | 41 | 0.003 | 3 | PHF8_MOUSE (Q80TJ7) PHD finger protein 8 | 30 | 7.7 |
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>TAR1_YEAST (Q8TGM6) Protein TAR1 (Transcript antisense to ribosomal RNA| protein 1) Length = 124 Score = 43.1 bits (100), Expect = 7e-04 Identities = 24/59 (40%), Positives = 33/59 (55%) Frame = -2 Query: 539 ESPAHSSTGTRSEITFPSHCLGAQHGFTFYFTTHWGFFSPFPHGTTSLSVTQEYLALQG 363 +SP H R++ T + FT++FT FFS F H T SLSV+++YLAL G Sbjct: 3 DSPTHKEQ--RAQNTMSDQMPFPFNNFTYFFTLFSKFFSSFHHCTCSLSVSRQYLALDG 59
>TAR1_KLULA (Q6CQE5) Protein TAR1| Length = 109 Score = 41.2 bits (95), Expect = 0.003 Identities = 19/35 (54%), Positives = 25/35 (71%) Frame = -2 Query: 467 HGFTFYFTTHWGFFSPFPHGTTSLSVTQEYLALQG 363 + FT++FT FFS F H T SLSV+++YLAL G Sbjct: 10 NNFTYFFTLFSKFFSSFHHCTCSLSVSRQYLALDG 44
>PHF8_MOUSE (Q80TJ7) PHD finger protein 8| Length = 1023 Score = 29.6 bits (65), Expect = 7.7 Identities = 14/31 (45%), Positives = 21/31 (67%) Frame = -2 Query: 578 PVGSVPLTKATAYESPAHSSTGTRSEITFPS 486 P GS+PLTK PAHS++ + S+++ PS Sbjct: 462 PAGSIPLTK------PAHSTSVSMSKLSLPS 486 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 91,301,601 Number of Sequences: 219361 Number of extensions: 1899258 Number of successful extensions: 3912 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 3792 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3907 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5824436538 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)