ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd2h15
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1GSH1_NEUCR (Q8X0X0) Glutamate--cysteine ligase (EC 6.3.2.2) (Gam... 31 2.0
2FBX15_MACFA (Q9GKV7) F-box only protein 15 31 2.6
3THET_THEVU (P04072) Thermitase (EC 3.4.21.66) 31 2.6
4HORN_HUMAN (Q86YZ3) Hornerin 30 4.5
5TNR12_MOUSE (Q9CR75) Tumor necrosis factor receptor superfamily ... 30 4.5
6PEX6_PENCH (Q9HG03) Peroxisomal biogenesis factor 6 (Peroxin-6) 30 5.9
7CATA_BRUSU (Q8FWU0) Catalase (EC 1.11.1.6) 30 5.9
8CATA_BRUME (P0A326) Catalase (EC 1.11.1.6) 30 5.9
9CATA_BRUAB (P0A327) Catalase (EC 1.11.1.6) 30 5.9
10KR412_HUMAN (Q9BQ66) Keratin-associated protein 4-12 (Keratin-as... 30 5.9
11VGLM_HHV6U (Q04630) Glycoprotein M 30 5.9
12UBP25_HUMAN (Q9UHP3) Ubiquitin carboxyl-terminal hydrolase 25 (E... 29 7.7
13YX1_CVHSA (P59632) Hypothetical protein X1 (ORF3) (Orf3a) 29 7.7
14KRA43_HUMAN (Q9BYR4) Keratin-associated protein 4-3 (Keratin-ass... 29 7.7
15UBP25_MOUSE (P57080) Ubiquitin carboxyl-terminal hydrolase 25 (E... 29 7.7
16RTN2_HUMAN (O75298) Reticulon-2 (Neuroendocrine-specific protein... 29 10.0
17POL2_BRAV (Q9YK98) RNA2 polyprotein (P2) [Contains: P2A protein;... 29 10.0
18NOP14_YARLI (Q6C2F4) Probable nucleolar complex protein 14 29 10.0
19CHD8_HUMAN (Q9HCK8) Chromodomain-helicase-DNA-binding protein 8 ... 29 10.0

>GSH1_NEUCR (Q8X0X0) Glutamate--cysteine ligase (EC 6.3.2.2)|
           (Gamma-glutamylcysteine synthetase) (Gamma-ECS) (GCS)
          Length = 728

 Score = 31.2 bits (69), Expect = 2.0
 Identities = 16/35 (45%), Positives = 19/35 (54%)
 Frame = -1

Query: 348 HPVTGVATRTTIPKILSPGSWTVSQYPTPKPSARS 244
           HP+T     TT P+I SPG +T   YP   P  RS
Sbjct: 155 HPIT----LTTFPRIGSPGVFTEPSYPVSGPKLRS 185



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>FBX15_MACFA (Q9GKV7) F-box only protein 15|
          Length = 434

 Score = 30.8 bits (68), Expect = 2.6
 Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
 Frame = -3

Query: 541 LDLYDCSRITVLAMRWFKKPLFPRLRWLGL--RGSLNRIMVDALVKTRPFLRLAC 383
           L   D   +T + M W+K P   RLRW  L  + +L+ + V  ++     +R+ C
Sbjct: 163 LSTLDLCGVTPVFMDWYKTPTKHRLRWHSLIAKYNLSHLTVSTMIGCDRLIRIFC 217



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>THET_THEVU (P04072) Thermitase (EC 3.4.21.66)|
          Length = 279

 Score = 30.8 bits (68), Expect = 2.6
 Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
 Frame = -1

Query: 330 ATRTTIPKILSPGSWTVSQYPTPKPSARSNAA-AWPYAAVSHVCLPQKGRNSSH 172
           +T  ++  + +PGSW  S YPT   ++ S  + A P+ A     L  +GR++S+
Sbjct: 194 STYGSVVDVAAPGSWIYSTYPTSTYASLSGTSMATPHVAGVAGLLASQGRSASN 247



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>HORN_HUMAN (Q86YZ3) Hornerin|
          Length = 2850

 Score = 30.0 bits (66), Expect = 4.5
 Identities = 27/108 (25%), Positives = 38/108 (35%), Gaps = 3/108 (2%)
 Frame = +3

Query: 90  HGTGT*GNVTARKYSLSGNTTRDQHKIDESCFDPSGASKHGS-QQHRAKLPHYSSLMVSA 266
           HG+G+  + +   Y      T    + +      SG SKHGS   H +    + S    A
Sbjct: 325 HGSGSSYSYSRGHYESGSGQTSGFGQHESGSGQSSGYSKHGSGSGHSSSQGQHGSTSGQA 384

Query: 267 SDTG--SPSNCQGXXXXXXXXXWRHQSPDVSRYGVPSSSPPHARRKKG 404
           S +G    S+ Q           RH S           SP H +R  G
Sbjct: 385 SSSGQHGSSSRQSSSYGQHESASRHSSGRGQHSSGSGQSPGHGQRGSG 432



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>TNR12_MOUSE (Q9CR75) Tumor necrosis factor receptor superfamily member 12A|
           precursor (Fibroblast growth factor-inducible
           immediate-early response protein 14) (FGF-inducible 14)
           (Fibroblast growth factor-regulated protein 2)
           (Tweak-receptor) (TweakR)
          Length = 129

 Score = 30.0 bits (66), Expect = 4.5
 Identities = 18/51 (35%), Positives = 26/51 (50%)
 Frame = -3

Query: 484 PLFPRLRWLGLRGSLNRIMVDALVKTRPFLRLACGGEELGTPYRDTSGDWC 332
           P   RL W  L G+L+ ++V ALV +    R     E+  TP  +T G+ C
Sbjct: 72  PAHFRLLWPILGGALSLVLVLALVSSFLVWRRCRRREKFTTPIEETGGEGC 122



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>PEX6_PENCH (Q9HG03) Peroxisomal biogenesis factor 6 (Peroxin-6)|
          Length = 1459

 Score = 29.6 bits (65), Expect = 5.9
 Identities = 19/62 (30%), Positives = 28/62 (45%)
 Frame = +3

Query: 345 DVSRYGVPSSSPPHARRKKGRVLTRASTMILFKLPLSPSHRSLGNNGFLNHRIASTVILL 524
           D  +YG  S  P   RR+ G+      T I  +L L P  R  G  G L+  +A+ +   
Sbjct: 2   DFEQYGQSSQQPRQRRRRAGKRRLNNKTPIAARLALDPQLR--GKVGILSEDLANDLFQQ 59

Query: 525 QS 530
           Q+
Sbjct: 60  QA 61



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>CATA_BRUSU (Q8FWU0) Catalase (EC 1.11.1.6)|
          Length = 498

 Score = 29.6 bits (65), Expect = 5.9
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = -1

Query: 384 VAARSWGLHTGTHPVTGVATRTTIPKILSPGSWT 283
           V A+ WG + GT  +TG  +R T  K+L PG+ T
Sbjct: 53  VHAKGWGAY-GTLTITGDISRYTKAKVLQPGAQT 85



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>CATA_BRUME (P0A326) Catalase (EC 1.11.1.6)|
          Length = 498

 Score = 29.6 bits (65), Expect = 5.9
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = -1

Query: 384 VAARSWGLHTGTHPVTGVATRTTIPKILSPGSWT 283
           V A+ WG + GT  +TG  +R T  K+L PG+ T
Sbjct: 53  VHAKGWGAY-GTLTITGDISRYTKAKVLQPGAQT 85



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>CATA_BRUAB (P0A327) Catalase (EC 1.11.1.6)|
          Length = 498

 Score = 29.6 bits (65), Expect = 5.9
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = -1

Query: 384 VAARSWGLHTGTHPVTGVATRTTIPKILSPGSWT 283
           V A+ WG + GT  +TG  +R T  K+L PG+ T
Sbjct: 53  VHAKGWGAY-GTLTITGDISRYTKAKVLQPGAQT 85



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>KR412_HUMAN (Q9BQ66) Keratin-associated protein 4-12 (Keratin-associated|
           protein 4.12) (Ultrahigh sulfur keratin-associated
           protein 4.12)
          Length = 201

 Score = 29.6 bits (65), Expect = 5.9
 Identities = 15/44 (34%), Positives = 19/44 (43%)
 Frame = -2

Query: 155 SCCITG*AIFSCCYISSCACSVCMWQTFVVTSCYVCCVQILDVI 24
           SCCI+     SCC  S C    C+       SC+  C +   VI
Sbjct: 144 SCCISSSCCPSCCESSCCRPCCCLRPVCGRVSCHTTCYRPTCVI 187



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>VGLM_HHV6U (Q04630) Glycoprotein M|
          Length = 344

 Score = 29.6 bits (65), Expect = 5.9
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = -3

Query: 178 LSSILCWSLVVLPDKLYFLAVTFPHVPVPCA 86
           L SI+C +L  +   +Y +A+ FP++  PCA
Sbjct: 15  LVSIICAALSFINVTVYLIAINFPNLGFPCA 45



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>UBP25_HUMAN (Q9UHP3) Ubiquitin carboxyl-terminal hydrolase 25 (EC 3.1.2.15)|
           (Ubiquitin thioesterase 25)
           (Ubiquitin-specific-processing protease 25)
           (Deubiquitinating enzyme 25) (USP on chromosome 21)
          Length = 1087

 Score = 29.3 bits (64), Expect = 7.7
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = +1

Query: 259 FRRRILAHRPTARAQDLRNRRPRGDTSHRMCPGM 360
           FRR +L ++P + AQDL    PR    HR  P M
Sbjct: 193 FRRLVLNYKPPSNAQDL----PRNQKEHRNLPFM 222



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>YX1_CVHSA (P59632) Hypothetical protein X1 (ORF3) (Orf3a)|
          Length = 274

 Score = 29.3 bits (64), Expect = 7.7
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = -1

Query: 177 SHQSCVGLLLYYRISYIFLLLHFLMCLFRVHVANICCYIMLCMLC 43
           SH   V   +  +  Y++ L++FL C+      N C  IM C LC
Sbjct: 92  SHLLLVAAGMEAQFLYLYALIYFLQCI------NACRIIMRCWLC 130



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>KRA43_HUMAN (Q9BYR4) Keratin-associated protein 4-3 (Keratin-associated protein|
           4.3) (Ultrahigh sulfur keratin-associated protein 4.3)
           (Fragment)
          Length = 98

 Score = 29.3 bits (64), Expect = 7.7
 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 6/43 (13%)
 Frame = -2

Query: 155 SCCITG*AIFSCCYIS----SCACSVCMWQTFVVTSCY--VCC 45
           SCCI+     SCC  S    SC  + C   +  ++SCY   CC
Sbjct: 6   SCCISSCCRPSCCISSCCKPSCCQTTCCRPSCCISSCYRPQCC 48



 Score = 28.9 bits (63), Expect = 10.0
 Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 6/43 (13%)
 Frame = -2

Query: 155 SCCITG*AIFSCCYIS----SCACSVCMWQTFVVTSCY--VCC 45
           SCC     I SCC+ S    SC C      T   T+C+  +CC
Sbjct: 51  SCCRPACCISSCCHPSCCVSSCRCPFSCPTTCCRTTCFHPICC 93



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>UBP25_MOUSE (P57080) Ubiquitin carboxyl-terminal hydrolase 25 (EC 3.1.2.15)|
           (Ubiquitin thioesterase 25)
           (Ubiquitin-specific-processing protease 25)
           (Deubiquitinating enzyme 25) (mUSP25)
          Length = 1055

 Score = 29.3 bits (64), Expect = 7.7
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = +1

Query: 259 FRRRILAHRPTARAQDLRNRRPRGDTSHRMCPGM 360
           FRR +L ++P + AQDL    PR    HR  P M
Sbjct: 193 FRRLVLNYKPPSNAQDL----PRNQKEHRNLPFM 222



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>RTN2_HUMAN (O75298) Reticulon-2 (Neuroendocrine-specific protein-like 1)|
           (NSP-like protein 1) (NSPLI)
          Length = 545

 Score = 28.9 bits (63), Expect = 10.0
 Identities = 28/107 (26%), Positives = 47/107 (43%), Gaps = 10/107 (9%)
 Frame = -1

Query: 333 VATRTTIPKI-LSPGSWT----VSQYPTPKPSARSNAAAWPYAAVSHVCLPQKGRNSSHQ 169
           +A   T+P + LSP  WT    V + PTP          W  +  S   +P     +   
Sbjct: 284 LAVYKTVPILELSPPLWTAIGWVQRGPTPPTPVLRVLLKWAKSPRSSG-VPSLSLGADMG 342

Query: 168 SCVGLLLYYRIS----YIFL-LLHFLMCLFRVHVANICCYIMLCMLC 43
           S V  LLY++ +     +F  L+  L+CL    + ++  ++ L +LC
Sbjct: 343 SKVADLLYWKDTRTSGVVFTGLMVSLLCLLHFSIVSVAAHLALLLLC 389



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>POL2_BRAV (Q9YK98) RNA2 polyprotein (P2) [Contains: P2A protein; Movement|
           protein (MP); Coat protein (CP)]
          Length = 1626

 Score = 28.9 bits (63), Expect = 10.0
 Identities = 26/72 (36%), Positives = 33/72 (45%), Gaps = 10/72 (13%)
 Frame = -1

Query: 414 LKPVLSCVW--HVAARSWGLHTGTHPVTGVATRTTIP--------KILSPGSWTVSQYPT 265
           LKPV+SCV   H   R W LH  + P  GV T T +P         +LSP S  +S+   
Sbjct: 350 LKPVVSCVQSVHAKVRDW-LH--SQPEVGV-TNTKVPLVLPEVCLGVLSPPS--LSEEIV 403

Query: 264 PKPSARSNAAAW 229
             P   S +  W
Sbjct: 404 DNPQETSQSGIW 415



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>NOP14_YARLI (Q6C2F4) Probable nucleolar complex protein 14|
          Length = 832

 Score = 28.9 bits (63), Expect = 10.0
 Identities = 23/92 (25%), Positives = 36/92 (39%), Gaps = 2/92 (2%)
 Frame = -3

Query: 325 EDDDSEDLEPWQLDGEPVSDAETISEE*CGSXXXXXXXXXXXXXEGSKQLSSILCWSLVV 146
           EDDD ED+E  ++D +     +   +E                   SK  SS L ++  +
Sbjct: 376 EDDDDEDVEIHEVDEDEDESGDKSGDE-------SGEEETTKSEPASKSSSSTLAYTFPI 428

Query: 145 LPDKLYFLAVT--FPHVPVPCACGKHLLLHHA 56
                 FL  T  +P   +P    +  +LHHA
Sbjct: 429 PKSHKMFLETTSAYPLDQLPTIIDRINVLHHA 460



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>CHD8_HUMAN (Q9HCK8) Chromodomain-helicase-DNA-binding protein 8 (EC 3.6.1.-)|
            (ATP-dependent helicase CHD8) (CHD-8) (Helicase with SNF2
            domain 1)
          Length = 2302

 Score = 28.9 bits (63), Expect = 10.0
 Identities = 21/65 (32%), Positives = 31/65 (47%)
 Frame = -1

Query: 405  VLSCVWHVAARSWGLHTGTHPVTGVATRTTIPKILSPGSWTVSQYPTPKPSARSNAAAWP 226
            VLS  W  + RS  + TG   + G          L+PG +  S  PTP+ S+ ++ A   
Sbjct: 1892 VLSGKWPSSRRSQEMVTGG--ILGPGNHLLDSPSLTPGEYGDSPVPTPRSSSAASMAEEE 1949

Query: 225  YAAVS 211
             +AVS
Sbjct: 1950 ASAVS 1954


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 89,499,939
Number of Sequences: 219361
Number of extensions: 2047577
Number of successful extensions: 6644
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 5984
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6575
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4430660157
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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