ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd2h15 |
|---|---|
| Clone Library Name | barley_pub |
>GSH1_NEUCR (Q8X0X0) Glutamate--cysteine ligase (EC 6.3.2.2)| (Gamma-glutamylcysteine synthetase) (Gamma-ECS) (GCS) Length = 728 Score = 31.2 bits (69), Expect = 2.0 Identities = 16/35 (45%), Positives = 19/35 (54%) Frame = -1 Query: 348 HPVTGVATRTTIPKILSPGSWTVSQYPTPKPSARS 244 HP+T TT P+I SPG +T YP P RS Sbjct: 155 HPIT----LTTFPRIGSPGVFTEPSYPVSGPKLRS 185
>FBX15_MACFA (Q9GKV7) F-box only protein 15| Length = 434 Score = 30.8 bits (68), Expect = 2.6 Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 2/55 (3%) Frame = -3 Query: 541 LDLYDCSRITVLAMRWFKKPLFPRLRWLGL--RGSLNRIMVDALVKTRPFLRLAC 383 L D +T + M W+K P RLRW L + +L+ + V ++ +R+ C Sbjct: 163 LSTLDLCGVTPVFMDWYKTPTKHRLRWHSLIAKYNLSHLTVSTMIGCDRLIRIFC 217
>THET_THEVU (P04072) Thermitase (EC 3.4.21.66)| Length = 279 Score = 30.8 bits (68), Expect = 2.6 Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 1/54 (1%) Frame = -1 Query: 330 ATRTTIPKILSPGSWTVSQYPTPKPSARSNAA-AWPYAAVSHVCLPQKGRNSSH 172 +T ++ + +PGSW S YPT ++ S + A P+ A L +GR++S+ Sbjct: 194 STYGSVVDVAAPGSWIYSTYPTSTYASLSGTSMATPHVAGVAGLLASQGRSASN 247
>HORN_HUMAN (Q86YZ3) Hornerin| Length = 2850 Score = 30.0 bits (66), Expect = 4.5 Identities = 27/108 (25%), Positives = 38/108 (35%), Gaps = 3/108 (2%) Frame = +3 Query: 90 HGTGT*GNVTARKYSLSGNTTRDQHKIDESCFDPSGASKHGS-QQHRAKLPHYSSLMVSA 266 HG+G+ + + Y T + + SG SKHGS H + + S A Sbjct: 325 HGSGSSYSYSRGHYESGSGQTSGFGQHESGSGQSSGYSKHGSGSGHSSSQGQHGSTSGQA 384 Query: 267 SDTG--SPSNCQGXXXXXXXXXWRHQSPDVSRYGVPSSSPPHARRKKG 404 S +G S+ Q RH S SP H +R G Sbjct: 385 SSSGQHGSSSRQSSSYGQHESASRHSSGRGQHSSGSGQSPGHGQRGSG 432
>TNR12_MOUSE (Q9CR75) Tumor necrosis factor receptor superfamily member 12A| precursor (Fibroblast growth factor-inducible immediate-early response protein 14) (FGF-inducible 14) (Fibroblast growth factor-regulated protein 2) (Tweak-receptor) (TweakR) Length = 129 Score = 30.0 bits (66), Expect = 4.5 Identities = 18/51 (35%), Positives = 26/51 (50%) Frame = -3 Query: 484 PLFPRLRWLGLRGSLNRIMVDALVKTRPFLRLACGGEELGTPYRDTSGDWC 332 P RL W L G+L+ ++V ALV + R E+ TP +T G+ C Sbjct: 72 PAHFRLLWPILGGALSLVLVLALVSSFLVWRRCRRREKFTTPIEETGGEGC 122
>PEX6_PENCH (Q9HG03) Peroxisomal biogenesis factor 6 (Peroxin-6)| Length = 1459 Score = 29.6 bits (65), Expect = 5.9 Identities = 19/62 (30%), Positives = 28/62 (45%) Frame = +3 Query: 345 DVSRYGVPSSSPPHARRKKGRVLTRASTMILFKLPLSPSHRSLGNNGFLNHRIASTVILL 524 D +YG S P RR+ G+ T I +L L P R G G L+ +A+ + Sbjct: 2 DFEQYGQSSQQPRQRRRRAGKRRLNNKTPIAARLALDPQLR--GKVGILSEDLANDLFQQ 59 Query: 525 QS 530 Q+ Sbjct: 60 QA 61
>CATA_BRUSU (Q8FWU0) Catalase (EC 1.11.1.6)| Length = 498 Score = 29.6 bits (65), Expect = 5.9 Identities = 15/34 (44%), Positives = 21/34 (61%) Frame = -1 Query: 384 VAARSWGLHTGTHPVTGVATRTTIPKILSPGSWT 283 V A+ WG + GT +TG +R T K+L PG+ T Sbjct: 53 VHAKGWGAY-GTLTITGDISRYTKAKVLQPGAQT 85
>CATA_BRUME (P0A326) Catalase (EC 1.11.1.6)| Length = 498 Score = 29.6 bits (65), Expect = 5.9 Identities = 15/34 (44%), Positives = 21/34 (61%) Frame = -1 Query: 384 VAARSWGLHTGTHPVTGVATRTTIPKILSPGSWT 283 V A+ WG + GT +TG +R T K+L PG+ T Sbjct: 53 VHAKGWGAY-GTLTITGDISRYTKAKVLQPGAQT 85
>CATA_BRUAB (P0A327) Catalase (EC 1.11.1.6)| Length = 498 Score = 29.6 bits (65), Expect = 5.9 Identities = 15/34 (44%), Positives = 21/34 (61%) Frame = -1 Query: 384 VAARSWGLHTGTHPVTGVATRTTIPKILSPGSWT 283 V A+ WG + GT +TG +R T K+L PG+ T Sbjct: 53 VHAKGWGAY-GTLTITGDISRYTKAKVLQPGAQT 85
>KR412_HUMAN (Q9BQ66) Keratin-associated protein 4-12 (Keratin-associated| protein 4.12) (Ultrahigh sulfur keratin-associated protein 4.12) Length = 201 Score = 29.6 bits (65), Expect = 5.9 Identities = 15/44 (34%), Positives = 19/44 (43%) Frame = -2 Query: 155 SCCITG*AIFSCCYISSCACSVCMWQTFVVTSCYVCCVQILDVI 24 SCCI+ SCC S C C+ SC+ C + VI Sbjct: 144 SCCISSSCCPSCCESSCCRPCCCLRPVCGRVSCHTTCYRPTCVI 187
>VGLM_HHV6U (Q04630) Glycoprotein M| Length = 344 Score = 29.6 bits (65), Expect = 5.9 Identities = 12/31 (38%), Positives = 20/31 (64%) Frame = -3 Query: 178 LSSILCWSLVVLPDKLYFLAVTFPHVPVPCA 86 L SI+C +L + +Y +A+ FP++ PCA Sbjct: 15 LVSIICAALSFINVTVYLIAINFPNLGFPCA 45
>UBP25_HUMAN (Q9UHP3) Ubiquitin carboxyl-terminal hydrolase 25 (EC 3.1.2.15)| (Ubiquitin thioesterase 25) (Ubiquitin-specific-processing protease 25) (Deubiquitinating enzyme 25) (USP on chromosome 21) Length = 1087 Score = 29.3 bits (64), Expect = 7.7 Identities = 15/34 (44%), Positives = 19/34 (55%) Frame = +1 Query: 259 FRRRILAHRPTARAQDLRNRRPRGDTSHRMCPGM 360 FRR +L ++P + AQDL PR HR P M Sbjct: 193 FRRLVLNYKPPSNAQDL----PRNQKEHRNLPFM 222
>YX1_CVHSA (P59632) Hypothetical protein X1 (ORF3) (Orf3a)| Length = 274 Score = 29.3 bits (64), Expect = 7.7 Identities = 15/45 (33%), Positives = 22/45 (48%) Frame = -1 Query: 177 SHQSCVGLLLYYRISYIFLLLHFLMCLFRVHVANICCYIMLCMLC 43 SH V + + Y++ L++FL C+ N C IM C LC Sbjct: 92 SHLLLVAAGMEAQFLYLYALIYFLQCI------NACRIIMRCWLC 130
>KRA43_HUMAN (Q9BYR4) Keratin-associated protein 4-3 (Keratin-associated protein| 4.3) (Ultrahigh sulfur keratin-associated protein 4.3) (Fragment) Length = 98 Score = 29.3 bits (64), Expect = 7.7 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 6/43 (13%) Frame = -2 Query: 155 SCCITG*AIFSCCYIS----SCACSVCMWQTFVVTSCY--VCC 45 SCCI+ SCC S SC + C + ++SCY CC Sbjct: 6 SCCISSCCRPSCCISSCCKPSCCQTTCCRPSCCISSCYRPQCC 48 Score = 28.9 bits (63), Expect = 10.0 Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 6/43 (13%) Frame = -2 Query: 155 SCCITG*AIFSCCYIS----SCACSVCMWQTFVVTSCY--VCC 45 SCC I SCC+ S SC C T T+C+ +CC Sbjct: 51 SCCRPACCISSCCHPSCCVSSCRCPFSCPTTCCRTTCFHPICC 93
>UBP25_MOUSE (P57080) Ubiquitin carboxyl-terminal hydrolase 25 (EC 3.1.2.15)| (Ubiquitin thioesterase 25) (Ubiquitin-specific-processing protease 25) (Deubiquitinating enzyme 25) (mUSP25) Length = 1055 Score = 29.3 bits (64), Expect = 7.7 Identities = 15/34 (44%), Positives = 19/34 (55%) Frame = +1 Query: 259 FRRRILAHRPTARAQDLRNRRPRGDTSHRMCPGM 360 FRR +L ++P + AQDL PR HR P M Sbjct: 193 FRRLVLNYKPPSNAQDL----PRNQKEHRNLPFM 222
>RTN2_HUMAN (O75298) Reticulon-2 (Neuroendocrine-specific protein-like 1)| (NSP-like protein 1) (NSPLI) Length = 545 Score = 28.9 bits (63), Expect = 10.0 Identities = 28/107 (26%), Positives = 47/107 (43%), Gaps = 10/107 (9%) Frame = -1 Query: 333 VATRTTIPKI-LSPGSWT----VSQYPTPKPSARSNAAAWPYAAVSHVCLPQKGRNSSHQ 169 +A T+P + LSP WT V + PTP W + S +P + Sbjct: 284 LAVYKTVPILELSPPLWTAIGWVQRGPTPPTPVLRVLLKWAKSPRSSG-VPSLSLGADMG 342 Query: 168 SCVGLLLYYRIS----YIFL-LLHFLMCLFRVHVANICCYIMLCMLC 43 S V LLY++ + +F L+ L+CL + ++ ++ L +LC Sbjct: 343 SKVADLLYWKDTRTSGVVFTGLMVSLLCLLHFSIVSVAAHLALLLLC 389
>POL2_BRAV (Q9YK98) RNA2 polyprotein (P2) [Contains: P2A protein; Movement| protein (MP); Coat protein (CP)] Length = 1626 Score = 28.9 bits (63), Expect = 10.0 Identities = 26/72 (36%), Positives = 33/72 (45%), Gaps = 10/72 (13%) Frame = -1 Query: 414 LKPVLSCVW--HVAARSWGLHTGTHPVTGVATRTTIP--------KILSPGSWTVSQYPT 265 LKPV+SCV H R W LH + P GV T T +P +LSP S +S+ Sbjct: 350 LKPVVSCVQSVHAKVRDW-LH--SQPEVGV-TNTKVPLVLPEVCLGVLSPPS--LSEEIV 403 Query: 264 PKPSARSNAAAW 229 P S + W Sbjct: 404 DNPQETSQSGIW 415
>NOP14_YARLI (Q6C2F4) Probable nucleolar complex protein 14| Length = 832 Score = 28.9 bits (63), Expect = 10.0 Identities = 23/92 (25%), Positives = 36/92 (39%), Gaps = 2/92 (2%) Frame = -3 Query: 325 EDDDSEDLEPWQLDGEPVSDAETISEE*CGSXXXXXXXXXXXXXEGSKQLSSILCWSLVV 146 EDDD ED+E ++D + + +E SK SS L ++ + Sbjct: 376 EDDDDEDVEIHEVDEDEDESGDKSGDE-------SGEEETTKSEPASKSSSSTLAYTFPI 428 Query: 145 LPDKLYFLAVT--FPHVPVPCACGKHLLLHHA 56 FL T +P +P + +LHHA Sbjct: 429 PKSHKMFLETTSAYPLDQLPTIIDRINVLHHA 460
>CHD8_HUMAN (Q9HCK8) Chromodomain-helicase-DNA-binding protein 8 (EC 3.6.1.-)| (ATP-dependent helicase CHD8) (CHD-8) (Helicase with SNF2 domain 1) Length = 2302 Score = 28.9 bits (63), Expect = 10.0 Identities = 21/65 (32%), Positives = 31/65 (47%) Frame = -1 Query: 405 VLSCVWHVAARSWGLHTGTHPVTGVATRTTIPKILSPGSWTVSQYPTPKPSARSNAAAWP 226 VLS W + RS + TG + G L+PG + S PTP+ S+ ++ A Sbjct: 1892 VLSGKWPSSRRSQEMVTGG--ILGPGNHLLDSPSLTPGEYGDSPVPTPRSSSAASMAEEE 1949 Query: 225 YAAVS 211 +AVS Sbjct: 1950 ASAVS 1954 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 89,499,939 Number of Sequences: 219361 Number of extensions: 2047577 Number of successful extensions: 6644 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 5984 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6575 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4430660157 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
