ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd2h14 |
|---|---|
| Clone Library Name | barley_pub |
>FLUG_EMENI (P38094) Protein fluG| Length = 865 Score = 52.0 bits (123), Expect = 5e-07 Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 5/74 (6%) Frame = +1 Query: 127 ARYAELRRAVEETAVVDAHAHNLVDTASS-----FPFLRCFSEADGDALAFAPHSLSFKR 291 A + LR ++ ++D HAHNL+ +++ +PF + SEA G ALA AP +LSF R Sbjct: 2 ATLSSLRHLIQTHPLIDNHAHNLLSQSAACKYAKYPFEQIISEAQGVALANAPSTLSFHR 61 Query: 292 SLKDIAALYGCEAS 333 + +A LY +S Sbjct: 62 AASQLATLYQSSSS 75
>LRC47_HUMAN (Q8N1G4) Leucine-rich repeat-containing protein 47| Length = 583 Score = 32.7 bits (73), Expect = 0.34 Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 1/71 (1%) Frame = +1 Query: 91 EA*ASDRRRSMEARYAELRRAVEETAVVDAHAH-NLVDTASSFPFLRCFSEADGDALAFA 267 EA A + R ++ E R+ + +V H + +L+D ++P C +ADGD ++F Sbjct: 406 EAKAKELVRQLQLEAEEQRKQKKRQSVSGLHRYLHLLDGNENYP---CLVDADGDVISFP 462 Query: 268 PHSLSFKRSLK 300 P + S K +K Sbjct: 463 PITNSEKTKVK 473
>LRC47_MOUSE (Q505F5) Leucine-rich repeat-containing protein 47| Length = 581 Score = 32.0 bits (71), Expect = 0.58 Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 1/71 (1%) Frame = +1 Query: 91 EA*ASDRRRSMEARYAELRRAVEETAVVDAHAH-NLVDTASSFPFLRCFSEADGDALAFA 267 EA A + R ++ E R+ + +V H + +L+D ++P C +A+GD ++F Sbjct: 405 EAKAKELVRQLQLEAEEQRKQKKRQSVSGLHRYLHLLDGKENYP---CLVDAEGDVISFP 461 Query: 268 PHSLSFKRSLK 300 P + S K +K Sbjct: 462 PITNSEKTKIK 472
>CSD_BACHD (Q9K7A0) Probable cysteine desulfurase (EC 2.8.1.7)| Length = 406 Score = 30.8 bits (68), Expect = 1.3 Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 4/69 (5%) Frame = +1 Query: 154 VEETAVVDAHAHN---LVDTASSFPFLRC-FSEADGDALAFAPHSLSFKRSLKDIAALYG 321 V+E A + AH H LVD A S P ++ E D AF+ H ++ I LYG Sbjct: 181 VKEIAEI-AHRHGAIMLVDGAQSAPHMKIDVQELGCDFFAFSGHKMAGPTG---IGVLYG 236 Query: 322 CEASLEKVE 348 +A LEK+E Sbjct: 237 KKAHLEKME 245
>RNF25_HUMAN (Q96BH1) RING finger protein 25 (EC 6.3.2.-)| Length = 459 Score = 30.8 bits (68), Expect = 1.3 Identities = 19/42 (45%), Positives = 23/42 (54%) Frame = +2 Query: 14 RKXRSGFRTVKQEGAAPGKSPSTPRLKRERATGGGAWRPGTR 139 R+ R R + +G PG S PRL R G GA+RPGTR Sbjct: 412 RRTRDCVRWERSKGRTPGSS--YPRLPR----GQGAYRPGTR 447
>TAF4_HUMAN (O00268) Transcription initiation factor TFIID subunit 4| (Transcription initiation factor TFIID 135 kDa subunit) (TAF(II)135) (TAFII-135) (TAFII135) (TAFII-130) (TAFII130) Length = 1085 Score = 29.6 bits (65), Expect = 2.9 Identities = 14/28 (50%), Positives = 15/28 (53%) Frame = +2 Query: 59 APGKSPSTPRLKRERATGGGAWRPGTRS 142 APG +P P R R GGG RPG S Sbjct: 82 APGAAPEPPPAGRARPGGGGPQRPGPPS 109
>IF2_DESVH (Q72ER1) Translation initiation factor IF-2| Length = 1079 Score = 28.5 bits (62), Expect = 6.4 Identities = 16/35 (45%), Positives = 18/35 (51%) Frame = +3 Query: 3 RGRHAXTVRVSARSNKKAPPPENLPALPG*SVSER 107 R RH R SAR+ KAP E A+P S ER Sbjct: 71 RRRHRDGDRASARAEAKAPEQEATAAMPETSAPER 105
>DRS1_GIBZE (Q4I830) ATP-dependent RNA helicase DRS1 (EC 3.6.1.-)| Length = 796 Score = 28.5 bits (62), Expect = 6.4 Identities = 14/33 (42%), Positives = 16/33 (48%) Frame = +2 Query: 44 KQEGAAPGKSPSTPRLKRERATGGGAWRPGTRS 142 K+ G K LK+ RA GGG WR G S Sbjct: 719 KKTGKLSNKDKKRLDLKQLRAEGGGEWRKGKNS 751
>TAT_HV2D1 (P17759) TAT protein (Transactivating regulatory protein)| Length = 130 Score = 28.5 bits (62), Expect = 6.4 Identities = 15/44 (34%), Positives = 23/44 (52%) Frame = +1 Query: 49 RRRRPRKISQHSPAEA*ASDRRRSMEARYAELRRAVEETAVVDA 180 RRR PRK H P + S R+ +++ + ++ ET VV A Sbjct: 82 RRRTPRKTKTHPPPASDKSISTRTGDSQPTKKQKKTPETTVVSA 125
>TPIS_MYCPE (Q8EW34) Triosephosphate isomerase (EC 5.3.1.1) (TIM)| (Triose-phosphate isomerase) Length = 250 Score = 28.1 bits (61), Expect = 8.3 Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 2/43 (4%) Frame = +1 Query: 286 KRSLKDIAALYGCEASLEKVEEFRKSQGLSS--IGSKCFQAAN 408 K++++ + LYG + + EEF K + ++ +GS C +A N Sbjct: 198 KQAVESLVVLYGGSVNDKNAEEFFKQKNINGALVGSFCLKAEN 240
>RHO_MICLU (P52154) Transcription termination factor rho (EC 3.6.1.-)| (ATP-dependent helicase rho) Length = 690 Score = 28.1 bits (61), Expect = 8.3 Identities = 16/39 (41%), Positives = 21/39 (53%) Frame = +1 Query: 52 RRRPRKISQHSPAEA*ASDRRRSMEARYAELRRAVEETA 168 RRR R+ + A A A D + EAR A+ +A ETA Sbjct: 95 RRRSRRADADTSAPAAAQDGQPQAEAREAQTEQAPRETA 133
>CYK3_YEAST (Q07533) Cytokinesis protein 3| Length = 885 Score = 28.1 bits (61), Expect = 8.3 Identities = 24/100 (24%), Positives = 43/100 (43%), Gaps = 7/100 (7%) Frame = +1 Query: 106 DRRRSMEARYAELRRAVEETAVVD---AHAHNLVDTA----SSFPFLRCFSEADGDALAF 264 D ++ + E R ++EE ++ +++ L D+A +SF + FS + A Sbjct: 227 DNQKFYDGFIPEKRYSLEEDSISSGLFSNSQYLNDSACSSENSFALMSDFSATSAGSFAR 286 Query: 265 APHSLSFKRSLKDIAALYGCEASLEKVEEFRKSQGLSSIG 384 ++ SF SL+ GC + +EF S S G Sbjct: 287 HKYAQSFSDSLQRSQNANGCSTKINDSQEFGDSNASSRNG 326
>EUTR_ECOLI (P36547) HTH-type transcriptional regulator eutR (Ethanolamine| operon regulatory protein) Length = 350 Score = 28.1 bits (61), Expect = 8.3 Identities = 13/51 (25%), Positives = 25/51 (49%), Gaps = 2/51 (3%) Frame = -1 Query: 413 DILAAWKHFEPIDDSP--WDFLNSSTFSSEASQPYKAAMSLRLLLKEREWG 267 ++++ W + D+ W F + F+++ Q + SL L + REWG Sbjct: 300 ELISPWSQSMTVKDAAMQWGFWHLGQFATDYQQLFSEKPSLTLHQRMREWG 350 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 45,722,891 Number of Sequences: 219361 Number of extensions: 670720 Number of successful extensions: 2872 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 2786 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2871 length of database: 80,573,946 effective HSP length: 100 effective length of database: 58,637,846 effective search space used: 2169600302 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
