ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd2h14
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1FLUG_EMENI (P38094) Protein fluG 52 5e-07
2LRC47_HUMAN (Q8N1G4) Leucine-rich repeat-containing protein 47 33 0.34
3LRC47_MOUSE (Q505F5) Leucine-rich repeat-containing protein 47 32 0.58
4CSD_BACHD (Q9K7A0) Probable cysteine desulfurase (EC 2.8.1.7) 31 1.3
5RNF25_HUMAN (Q96BH1) RING finger protein 25 (EC 6.3.2.-) 31 1.3
6TAF4_HUMAN (O00268) Transcription initiation factor TFIID subuni... 30 2.9
7IF2_DESVH (Q72ER1) Translation initiation factor IF-2 28 6.4
8DRS1_GIBZE (Q4I830) ATP-dependent RNA helicase DRS1 (EC 3.6.1.-) 28 6.4
9TAT_HV2D1 (P17759) TAT protein (Transactivating regulatory protein) 28 6.4
10TPIS_MYCPE (Q8EW34) Triosephosphate isomerase (EC 5.3.1.1) (TIM)... 28 8.3
11RHO_MICLU (P52154) Transcription termination factor rho (EC 3.6.... 28 8.3
12CYK3_YEAST (Q07533) Cytokinesis protein 3 28 8.3
13EUTR_ECOLI (P36547) HTH-type transcriptional regulator eutR (Eth... 28 8.3

>FLUG_EMENI (P38094) Protein fluG|
          Length = 865

 Score = 52.0 bits (123), Expect = 5e-07
 Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 5/74 (6%)
 Frame = +1

Query: 127 ARYAELRRAVEETAVVDAHAHNLVDTASS-----FPFLRCFSEADGDALAFAPHSLSFKR 291
           A  + LR  ++   ++D HAHNL+  +++     +PF +  SEA G ALA AP +LSF R
Sbjct: 2   ATLSSLRHLIQTHPLIDNHAHNLLSQSAACKYAKYPFEQIISEAQGVALANAPSTLSFHR 61

Query: 292 SLKDIAALYGCEAS 333
           +   +A LY   +S
Sbjct: 62  AASQLATLYQSSSS 75



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>LRC47_HUMAN (Q8N1G4) Leucine-rich repeat-containing protein 47|
          Length = 583

 Score = 32.7 bits (73), Expect = 0.34
 Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
 Frame = +1

Query: 91  EA*ASDRRRSMEARYAELRRAVEETAVVDAHAH-NLVDTASSFPFLRCFSEADGDALAFA 267
           EA A +  R ++    E R+  +  +V   H + +L+D   ++P   C  +ADGD ++F 
Sbjct: 406 EAKAKELVRQLQLEAEEQRKQKKRQSVSGLHRYLHLLDGNENYP---CLVDADGDVISFP 462

Query: 268 PHSLSFKRSLK 300
           P + S K  +K
Sbjct: 463 PITNSEKTKVK 473



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>LRC47_MOUSE (Q505F5) Leucine-rich repeat-containing protein 47|
          Length = 581

 Score = 32.0 bits (71), Expect = 0.58
 Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
 Frame = +1

Query: 91  EA*ASDRRRSMEARYAELRRAVEETAVVDAHAH-NLVDTASSFPFLRCFSEADGDALAFA 267
           EA A +  R ++    E R+  +  +V   H + +L+D   ++P   C  +A+GD ++F 
Sbjct: 405 EAKAKELVRQLQLEAEEQRKQKKRQSVSGLHRYLHLLDGKENYP---CLVDAEGDVISFP 461

Query: 268 PHSLSFKRSLK 300
           P + S K  +K
Sbjct: 462 PITNSEKTKIK 472



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>CSD_BACHD (Q9K7A0) Probable cysteine desulfurase (EC 2.8.1.7)|
          Length = 406

 Score = 30.8 bits (68), Expect = 1.3
 Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
 Frame = +1

Query: 154 VEETAVVDAHAHN---LVDTASSFPFLRC-FSEADGDALAFAPHSLSFKRSLKDIAALYG 321
           V+E A + AH H    LVD A S P ++    E   D  AF+ H ++       I  LYG
Sbjct: 181 VKEIAEI-AHRHGAIMLVDGAQSAPHMKIDVQELGCDFFAFSGHKMAGPTG---IGVLYG 236

Query: 322 CEASLEKVE 348
            +A LEK+E
Sbjct: 237 KKAHLEKME 245



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>RNF25_HUMAN (Q96BH1) RING finger protein 25 (EC 6.3.2.-)|
          Length = 459

 Score = 30.8 bits (68), Expect = 1.3
 Identities = 19/42 (45%), Positives = 23/42 (54%)
 Frame = +2

Query: 14  RKXRSGFRTVKQEGAAPGKSPSTPRLKRERATGGGAWRPGTR 139
           R+ R   R  + +G  PG S   PRL R    G GA+RPGTR
Sbjct: 412 RRTRDCVRWERSKGRTPGSS--YPRLPR----GQGAYRPGTR 447



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>TAF4_HUMAN (O00268) Transcription initiation factor TFIID subunit 4|
           (Transcription initiation factor TFIID 135 kDa subunit)
           (TAF(II)135) (TAFII-135) (TAFII135) (TAFII-130)
           (TAFII130)
          Length = 1085

 Score = 29.6 bits (65), Expect = 2.9
 Identities = 14/28 (50%), Positives = 15/28 (53%)
 Frame = +2

Query: 59  APGKSPSTPRLKRERATGGGAWRPGTRS 142
           APG +P  P   R R  GGG  RPG  S
Sbjct: 82  APGAAPEPPPAGRARPGGGGPQRPGPPS 109



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>IF2_DESVH (Q72ER1) Translation initiation factor IF-2|
          Length = 1079

 Score = 28.5 bits (62), Expect = 6.4
 Identities = 16/35 (45%), Positives = 18/35 (51%)
 Frame = +3

Query: 3   RGRHAXTVRVSARSNKKAPPPENLPALPG*SVSER 107
           R RH    R SAR+  KAP  E   A+P  S  ER
Sbjct: 71  RRRHRDGDRASARAEAKAPEQEATAAMPETSAPER 105



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>DRS1_GIBZE (Q4I830) ATP-dependent RNA helicase DRS1 (EC 3.6.1.-)|
          Length = 796

 Score = 28.5 bits (62), Expect = 6.4
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = +2

Query: 44  KQEGAAPGKSPSTPRLKRERATGGGAWRPGTRS 142
           K+ G    K      LK+ RA GGG WR G  S
Sbjct: 719 KKTGKLSNKDKKRLDLKQLRAEGGGEWRKGKNS 751



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>TAT_HV2D1 (P17759) TAT protein (Transactivating regulatory protein)|
          Length = 130

 Score = 28.5 bits (62), Expect = 6.4
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +1

Query: 49  RRRRPRKISQHSPAEA*ASDRRRSMEARYAELRRAVEETAVVDA 180
           RRR PRK   H P  +  S   R+ +++  + ++   ET VV A
Sbjct: 82  RRRTPRKTKTHPPPASDKSISTRTGDSQPTKKQKKTPETTVVSA 125



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>TPIS_MYCPE (Q8EW34) Triosephosphate isomerase (EC 5.3.1.1) (TIM)|
           (Triose-phosphate isomerase)
          Length = 250

 Score = 28.1 bits (61), Expect = 8.3
 Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
 Frame = +1

Query: 286 KRSLKDIAALYGCEASLEKVEEFRKSQGLSS--IGSKCFQAAN 408
           K++++ +  LYG   + +  EEF K + ++   +GS C +A N
Sbjct: 198 KQAVESLVVLYGGSVNDKNAEEFFKQKNINGALVGSFCLKAEN 240



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>RHO_MICLU (P52154) Transcription termination factor rho (EC 3.6.1.-)|
           (ATP-dependent helicase rho)
          Length = 690

 Score = 28.1 bits (61), Expect = 8.3
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = +1

Query: 52  RRRPRKISQHSPAEA*ASDRRRSMEARYAELRRAVEETA 168
           RRR R+    + A A A D +   EAR A+  +A  ETA
Sbjct: 95  RRRSRRADADTSAPAAAQDGQPQAEAREAQTEQAPRETA 133



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>CYK3_YEAST (Q07533) Cytokinesis protein 3|
          Length = 885

 Score = 28.1 bits (61), Expect = 8.3
 Identities = 24/100 (24%), Positives = 43/100 (43%), Gaps = 7/100 (7%)
 Frame = +1

Query: 106 DRRRSMEARYAELRRAVEETAVVD---AHAHNLVDTA----SSFPFLRCFSEADGDALAF 264
           D ++  +    E R ++EE ++     +++  L D+A    +SF  +  FS     + A 
Sbjct: 227 DNQKFYDGFIPEKRYSLEEDSISSGLFSNSQYLNDSACSSENSFALMSDFSATSAGSFAR 286

Query: 265 APHSLSFKRSLKDIAALYGCEASLEKVEEFRKSQGLSSIG 384
             ++ SF  SL+      GC   +   +EF  S   S  G
Sbjct: 287 HKYAQSFSDSLQRSQNANGCSTKINDSQEFGDSNASSRNG 326



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>EUTR_ECOLI (P36547) HTH-type transcriptional regulator eutR (Ethanolamine|
           operon regulatory protein)
          Length = 350

 Score = 28.1 bits (61), Expect = 8.3
 Identities = 13/51 (25%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = -1

Query: 413 DILAAWKHFEPIDDSP--WDFLNSSTFSSEASQPYKAAMSLRLLLKEREWG 267
           ++++ W     + D+   W F +   F+++  Q +    SL L  + REWG
Sbjct: 300 ELISPWSQSMTVKDAAMQWGFWHLGQFATDYQQLFSEKPSLTLHQRMREWG 350


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,722,891
Number of Sequences: 219361
Number of extensions: 670720
Number of successful extensions: 2872
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 2786
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2871
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2169600302
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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