ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd2h14 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_196818.1| Oryza sativa (japonica cultivar-group) putative glutamine synthetase (OSJNBa0018F16.4), mRNA Length = 2739 Score = 242 bits (122), Expect = 7e-61 Identities = 213/240 (88%), Gaps = 5/240 (2%) Strand = Plus / Plus Query: 121 atggaggccaggtacgcggagctgcgacgcgcggtggaggagacggcggtggtggacgcg 180 |||||| ||| |||||||| |||||| ||||||| ||||||| |||||| |||||||||| Sbjct: 7 atggagtccaagtacgcggcgctgcggcgcgcggcggaggaggcggcggcggtggacgcg 66 Query: 181 cacgcgcacaacctcgtcgac-acggcgtcctccttccccttcctccgctgcttctccga 239 ||||||||||||||||||| | ||||| ||| | |||||||||||||||||||||||||| Sbjct: 67 cacgcgcacaacctcgtcgccgacggc-tccgcgttccccttcctccgctgcttctccga 125 Query: 240 ggccgacggcg---acgcgctcgccttcgctccccactccctctccttcaagagaagcct 296 |||||||| || |||| |||||| ||||||||||| |||||||||||||||||||||| Sbjct: 126 ggccgacgccgccgacgccctcgccctcgctccccacaccctctccttcaagagaagcct 185 Query: 297 caaggacatcgccgccttgtacggctgtgaagcctcacttgagaaggtggaagagttcag 356 | ||||||||| || |||||| ||||||||| ||||||||||||||||| |||||||| Sbjct: 186 gagggacatcgctgcattgtacaactgtgaagcttcacttgagaaggtggaggagttcag 245
>dbj|AK099882.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013111O16, full insert sequence Length = 3106 Score = 242 bits (122), Expect = 7e-61 Identities = 213/240 (88%), Gaps = 5/240 (2%) Strand = Plus / Plus Query: 121 atggaggccaggtacgcggagctgcgacgcgcggtggaggagacggcggtggtggacgcg 180 |||||| ||| |||||||| |||||| ||||||| ||||||| |||||| |||||||||| Sbjct: 162 atggagtccaagtacgcggcgctgcggcgcgcggcggaggaggcggcggcggtggacgcg 221 Query: 181 cacgcgcacaacctcgtcgac-acggcgtcctccttccccttcctccgctgcttctccga 239 ||||||||||||||||||| | ||||| ||| | |||||||||||||||||||||||||| Sbjct: 222 cacgcgcacaacctcgtcgccgacggc-tccgcgttccccttcctccgctgcttctccga 280 Query: 240 ggccgacggcg---acgcgctcgccttcgctccccactccctctccttcaagagaagcct 296 |||||||| || |||| |||||| ||||||||||| |||||||||||||||||||||| Sbjct: 281 ggccgacgccgccgacgccctcgccctcgctccccacaccctctccttcaagagaagcct 340 Query: 297 caaggacatcgccgccttgtacggctgtgaagcctcacttgagaaggtggaagagttcag 356 | ||||||||| || |||||| ||||||||| ||||||||||||||||| |||||||| Sbjct: 341 gagggacatcgctgcattgtacaactgtgaagcttcacttgagaaggtggaggagttcag 400
>dbj|AK066867.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013075P13, full insert sequence Length = 2900 Score = 242 bits (122), Expect = 7e-61 Identities = 213/240 (88%), Gaps = 5/240 (2%) Strand = Plus / Plus Query: 121 atggaggccaggtacgcggagctgcgacgcgcggtggaggagacggcggtggtggacgcg 180 |||||| ||| |||||||| |||||| ||||||| ||||||| |||||| |||||||||| Sbjct: 148 atggagtccaagtacgcggcgctgcggcgcgcggcggaggaggcggcggcggtggacgcg 207 Query: 181 cacgcgcacaacctcgtcgac-acggcgtcctccttccccttcctccgctgcttctccga 239 ||||||||||||||||||| | ||||| ||| | |||||||||||||||||||||||||| Sbjct: 208 cacgcgcacaacctcgtcgccgacggc-tccgcgttccccttcctccgctgcttctccga 266 Query: 240 ggccgacggcg---acgcgctcgccttcgctccccactccctctccttcaagagaagcct 296 |||||||| || |||| |||||| ||||||||||| |||||||||||||||||||||| Sbjct: 267 ggccgacgccgccgacgccctcgccctcgctccccacaccctctccttcaagagaagcct 326 Query: 297 caaggacatcgccgccttgtacggctgtgaagcctcacttgagaaggtggaagagttcag 356 | ||||||||| || |||||| ||||||||| ||||||||||||||||| |||||||| Sbjct: 327 gagggacatcgctgcattgtacaactgtgaagcttcacttgagaaggtggaggagttcag 386
>gb|AC025905.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone nbxb0018F16, complete sequence Length = 179157 Score = 170 bits (86), Expect = 2e-39 Identities = 153/172 (88%), Gaps = 5/172 (2%) Strand = Plus / Plus Query: 121 atggaggccaggtacgcggagctgcgacgcgcggtggaggagacggcggtggtggacgcg 180 |||||| ||| |||||||| |||||| ||||||| ||||||| |||||| |||||||||| Sbjct: 51706 atggagtccaagtacgcggcgctgcggcgcgcggcggaggaggcggcggcggtggacgcg 51765 Query: 181 cacgcgcacaacctcgtcgac-acggcgtcctccttccccttcctccgctgcttctccga 239 ||||||||||||||||||| | ||||| ||| | |||||||||||||||||||||||||| Sbjct: 51766 cacgcgcacaacctcgtcgccgacggc-tccgcgttccccttcctccgctgcttctccga 51824 Query: 240 ggccga---cggcgacgcgctcgccttcgctccccactccctctccttcaag 288 |||||| || |||||| |||||| ||||||||||| |||||||||||||| Sbjct: 51825 ggccgacgccgccgacgccctcgccctcgctccccacaccctctccttcaag 51876 Score = 75.8 bits (38), Expect = 1e-10 Identities = 62/70 (88%) Strand = Plus / Plus Query: 287 agagaagcctcaaggacatcgccgccttgtacggctgtgaagcctcacttgagaaggtgg 346 |||||||||| | ||||||||| || |||||| ||||||||| |||||||||||||||| Sbjct: 52935 agagaagcctgagggacatcgctgcattgtacaactgtgaagcttcacttgagaaggtgg 52994 Query: 347 aagagttcag 356 | |||||||| Sbjct: 52995 aggagttcag 53004
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 170 bits (86), Expect = 2e-39 Identities = 153/172 (88%), Gaps = 5/172 (2%) Strand = Plus / Plus Query: 121 atggaggccaggtacgcggagctgcgacgcgcggtggaggagacggcggtggtggacgcg 180 |||||| ||| |||||||| |||||| ||||||| ||||||| |||||| |||||||||| Sbjct: 16172817 atggagtccaagtacgcggcgctgcggcgcgcggcggaggaggcggcggcggtggacgcg 16172876 Query: 181 cacgcgcacaacctcgtcgac-acggcgtcctccttccccttcctccgctgcttctccga 239 ||||||||||||||||||| | ||||| ||| | |||||||||||||||||||||||||| Sbjct: 16172877 cacgcgcacaacctcgtcgccgacggc-tccgcgttccccttcctccgctgcttctccga 16172935 Query: 240 ggccga---cggcgacgcgctcgccttcgctccccactccctctccttcaag 288 |||||| || |||||| |||||| ||||||||||| |||||||||||||| Sbjct: 16172936 ggccgacgccgccgacgccctcgccctcgctccccacaccctctccttcaag 16172987 Score = 75.8 bits (38), Expect = 1e-10 Identities = 62/70 (88%) Strand = Plus / Plus Query: 287 agagaagcctcaaggacatcgccgccttgtacggctgtgaagcctcacttgagaaggtgg 346 |||||||||| | ||||||||| || |||||| ||||||||| |||||||||||||||| Sbjct: 16174046 agagaagcctgagggacatcgctgcattgtacaactgtgaagcttcacttgagaaggtgg 16174105 Query: 347 aagagttcag 356 | |||||||| Sbjct: 16174106 aggagttcag 16174115 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 153 ggtggaggagacggcggtgg 172 |||||||||||||||||||| Sbjct: 21552460 ggtggaggagacggcggtgg 21552441
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 170 bits (86), Expect = 2e-39 Identities = 153/172 (88%), Gaps = 5/172 (2%) Strand = Plus / Plus Query: 121 atggaggccaggtacgcggagctgcgacgcgcggtggaggagacggcggtggtggacgcg 180 |||||| ||| |||||||| |||||| ||||||| ||||||| |||||| |||||||||| Sbjct: 16181058 atggagtccaagtacgcggcgctgcggcgcgcggcggaggaggcggcggcggtggacgcg 16181117 Query: 181 cacgcgcacaacctcgtcgac-acggcgtcctccttccccttcctccgctgcttctccga 239 ||||||||||||||||||| | ||||| ||| | |||||||||||||||||||||||||| Sbjct: 16181118 cacgcgcacaacctcgtcgccgacggc-tccgcgttccccttcctccgctgcttctccga 16181176 Query: 240 ggccga---cggcgacgcgctcgccttcgctccccactccctctccttcaag 288 |||||| || |||||| |||||| ||||||||||| |||||||||||||| Sbjct: 16181177 ggccgacgccgccgacgccctcgccctcgctccccacaccctctccttcaag 16181228 Score = 75.8 bits (38), Expect = 1e-10 Identities = 62/70 (88%) Strand = Plus / Plus Query: 287 agagaagcctcaaggacatcgccgccttgtacggctgtgaagcctcacttgagaaggtgg 346 |||||||||| | ||||||||| || |||||| ||||||||| |||||||||||||||| Sbjct: 16182287 agagaagcctgagggacatcgctgcattgtacaactgtgaagcttcacttgagaaggtgg 16182346 Query: 347 aagagttcag 356 | |||||||| Sbjct: 16182347 aggagttcag 16182356 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 153 ggtggaggagacggcggtgg 172 |||||||||||||||||||| Sbjct: 21564123 ggtggaggagacggcggtgg 21564104
>ref|NM_115178.4| Arabidopsis thaliana glutamate-ammonia ligase AT3G53180 mRNA, complete cds Length = 2939 Score = 46.1 bits (23), Expect = 0.090 Identities = 50/59 (84%) Strand = Plus / Plus Query: 232 ttctccgaggccgacggcgacgcgctcgccttcgctccccactccctctccttcaagag 290 ||||||||||| | ||||||||| | |||||||||| || || |||||||||||||| Sbjct: 280 ttctccgaggctgccggcgacgctttaaccttcgctcctcattctctctccttcaagag 338
>emb|AJ632270.1| Actinoplanes teichomyceticus teicoplanin gene cluster Length = 89976 Score = 46.1 bits (23), Expect = 0.090 Identities = 23/23 (100%) Strand = Plus / Plus Query: 162 gacggcggtggtggacgcgcacg 184 ||||||||||||||||||||||| Sbjct: 18949 gacggcggtggtggacgcgcacg 18971
>emb|AJ605139.1| Actinoplanes teichomyceticus gene cluster for biosynthesis of glycopeptide antibiotic teicoplanin Length = 89713 Score = 46.1 bits (23), Expect = 0.090 Identities = 23/23 (100%) Strand = Plus / Plus Query: 162 gacggcggtggtggacgcgcacg 184 ||||||||||||||||||||||| Sbjct: 25556 gacggcggtggtggacgcgcacg 25578
>gb|AY062678.1| Arabidopsis thaliana nodulin / glutamate-ammonia ligase-like protein (At3g53180; T4D2.110) mRNA, complete cds Length = 3033 Score = 46.1 bits (23), Expect = 0.090 Identities = 50/59 (84%) Strand = Plus / Plus Query: 232 ttctccgaggccgacggcgacgcgctcgccttcgctccccactccctctccttcaagag 290 ||||||||||| | ||||||||| | |||||||||| || || |||||||||||||| Sbjct: 168 ttctccgaggctgccggcgacgctttaaccttcgctcctcattctctctccttcaagag 226
>emb|BX823285.1|CNS0A7UD Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS1ZD11 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 2795 Score = 46.1 bits (23), Expect = 0.090 Identities = 50/59 (84%) Strand = Plus / Plus Query: 232 ttctccgaggccgacggcgacgcgctcgccttcgctccccactccctctccttcaagag 290 ||||||||||| | ||||||||| | |||||||||| || || |||||||||||||| Sbjct: 234 ttctccgaggctgccggcgacgctttaaccttcgctcctcattctctctccttcaagag 292
>ref|XM_467460.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1281 Score = 44.1 bits (22), Expect = 0.35 Identities = 25/26 (96%) Strand = Plus / Plus Query: 151 gcggtggaggagacggcggtggtgga 176 ||||||||||||||||||| |||||| Sbjct: 1238 gcggtggaggagacggcggcggtgga 1263
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 44.1 bits (22), Expect = 0.35 Identities = 22/22 (100%) Strand = Plus / Minus Query: 245 acggcgacgcgctcgccttcgc 266 |||||||||||||||||||||| Sbjct: 4651417 acggcgacgcgctcgccttcgc 4651396
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 44.1 bits (22), Expect = 0.35 Identities = 25/26 (96%) Strand = Plus / Plus Query: 151 gcggtggaggagacggcggtggtgga 176 ||||||||||||||||||| |||||| Sbjct: 29678364 gcggtggaggagacggcggcggtgga 29678389 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 151 gcggtggaggagacggcggtggtgg 175 |||||||||||| |||||||||||| Sbjct: 1015740 gcggtggaggaggcggcggtggtgg 1015764 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 246 cggcgacgcgctcgccttcg 265 |||||||||||||||||||| Sbjct: 26050166 cggcgacgcgctcgccttcg 26050185
>dbj|AP004047.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1191_G08 Length = 172832 Score = 44.1 bits (22), Expect = 0.35 Identities = 25/26 (96%) Strand = Plus / Plus Query: 151 gcggtggaggagacggcggtggtgga 176 ||||||||||||||||||| |||||| Sbjct: 47343 gcggtggaggagacggcggcggtgga 47368
>ref|XM_463896.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1967 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 151 gcggtggaggagacggcggtggtgg 175 |||||||||||| |||||||||||| Sbjct: 1534 gcggtggaggaggcggcggtggtgg 1558
>ref|NM_183955.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1794 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 151 gcggtggaggagacggcggtggtgg 175 |||||||||||| |||||||||||| Sbjct: 1456 gcggtggaggaggcggcggtggtgg 1480
>gb|AY022748.1| Oryza sativa microsatellite MRG5073 containing (CCT)X8, genomic sequence Length = 224 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 151 gcggtggaggagacggcggtggtgg 175 |||||||||||| |||||||||||| Sbjct: 201 gcggtggaggaggcggcggtggtgg 177
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 241 gccgacggcgacgcgctcgccttcg 265 |||||||||||| |||||||||||| Sbjct: 3000587 gccgacggcgacacgctcgccttcg 3000563
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 241 gccgacggcgacgcgctcgccttcg 265 |||||||||||| |||||||||||| Sbjct: 47627 gccgacggcgacacgctcgccttcg 47651
>gb|AY523973.1|AY523972S2 Azospirillum brasilense plasmid 90 MDa, partial sequence Length = 67651 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 158 aggagacggcggtggtggacg 178 ||||||||||||||||||||| Sbjct: 57305 aggagacggcggtggtggacg 57325
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 241 gccgacggcgacgcgctcgccttcg 265 |||||||||||| |||||||||||| Sbjct: 3893229 gccgacggcgacacgctcgccttcg 3893253
>emb|AL939116.1|SCO939116 Streptomyces coelicolor A3(2) complete genome; segment 13/29 Length = 293050 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 242 ccgacggcgacgcgctcgccttcgc 266 |||||||||||| |||||||||||| Sbjct: 6532 ccgacggcgacgggctcgccttcgc 6508
>emb|AL132958.1|ATT4D2 Arabidopsis thaliana DNA chromosome 3, BAC clone T4D2 Length = 92611 Score = 42.1 bits (21), Expect = 1.4 Identities = 48/57 (84%) Strand = Plus / Plus Query: 232 ttctccgaggccgacggcgacgcgctcgccttcgctccccactccctctccttcaag 288 ||||||||||| | ||||||||| | |||||||||| || || |||||||||||| Sbjct: 31241 ttctccgaggctgccggcgacgctttaaccttcgctcctcattctctctccttcaag 31297
>gb|AC114147.5| Rattus norvegicus BAC CH230-144F3 (Children's Hospital Oakland Research Institute Rat (BN/SsNHsd/MCW) BAC library) complete sequence Length = 214988 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 209 cctccttccccttcctccgctgcttctcc 237 |||||||||||||||||||| ||||||| Sbjct: 189054 cctccttccccttcctccgcctcttctcc 189082
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 236 ccgaggccgacggcgacgcgc 256 ||||||||||||||||||||| Sbjct: 18181461 ccgaggccgacggcgacgcgc 18181481
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 151 gcggtggaggagacggcggtggtgg 175 |||||||||||| |||||||||||| Sbjct: 13524303 gcggtggaggaggcggcggtggtgg 13524327
>dbj|AP003329.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1045F02 Length = 215378 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 151 gcggtggaggagacggcggtggtgg 175 |||||||||||| |||||||||||| Sbjct: 78263 gcggtggaggaggcggcggtggtgg 78287
>gb|AC122335.4| Mus musculus BAC clone RP23-350F7 from chromosome 10, complete sequence Length = 193300 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 206 cgtcctccttccccttcctcc 226 ||||||||||||||||||||| Sbjct: 111062 cgtcctccttccccttcctcc 111082
>dbj|AP005851.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBb0088N06 Length = 123454 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 151 gcggtggaggagacggcggtggtgg 175 |||||||||||| |||||||||||| Sbjct: 4448 gcggtggaggaggcggcggtggtgg 4472
>dbj|AP005759.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0556A05 Length = 158189 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 236 ccgaggccgacggcgacgcgc 256 ||||||||||||||||||||| Sbjct: 30185 ccgaggccgacggcgacgcgc 30205
>dbj|AP004084.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1217_F02 Length = 118822 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 151 gcggtggaggagacggcggtggtgg 175 |||||||||||| |||||||||||| Sbjct: 87159 gcggtggaggaggcggcggtggtgg 87183
>dbj|AK070181.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023043H21, full insert sequence Length = 1967 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 151 gcggtggaggagacggcggtggtgg 175 |||||||||||| |||||||||||| Sbjct: 1534 gcggtggaggaggcggcggtggtgg 1558
>emb|AM055943.1| Toxoplasma gondii, strain RH, genomic DNA chromosome Ib Length = 2013089 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 338 agaaggtggaagagttcagga 358 ||||||||||||||||||||| Sbjct: 1706507 agaaggtggaagagttcagga 1706487
>dbj|AK063921.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-123-B10, full insert sequence Length = 2024 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 151 gcggtggaggagacggcggtggtgg 175 |||||||||||| |||||||||||| Sbjct: 1527 gcggtggaggaggcggcggtggtgg 1551
>ref|XM_467036.1| Oryza sativa (japonica cultivar-group), mRNA Length = 791 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 246 cggcgacgcgctcgccttcg 265 |||||||||||||||||||| Sbjct: 146 cggcgacgcgctcgccttcg 165
>ref|NM_197738.1| Oryza sativa (japonica cultivar-group) unknown protein (OSJNBa0042H09.9), mRNA Length = 1150 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 153 ggtggaggagacggcggtgg 172 |||||||||||||||||||| Sbjct: 174 ggtggaggagacggcggtgg 193
>gb|AC124228.16| Mus musculus chromosome 5, clone RP23-345O14, complete sequence Length = 219244 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 283 ttcaagagaagcctcaagga 302 |||||||||||||||||||| Sbjct: 146851 ttcaagagaagcctcaagga 146832
>gb|AC120986.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1781_H11, complete sequence Length = 204649 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 153 ggtggaggagacggcggtgg 172 |||||||||||||||||||| Sbjct: 159853 ggtggaggagacggcggtgg 159872
>gb|AC120990.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0040E06, complete sequence Length = 160907 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 153 ggtggaggagacggcggtgg 172 |||||||||||||||||||| Sbjct: 12363 ggtggaggagacggcggtgg 12382
>gb|AC137751.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0014E11, complete sequence Length = 199348 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 156 ggaggagacggcggtggtgg 175 |||||||||||||||||||| Sbjct: 158458 ggaggagacggcggtggtgg 158477
>ref|XM_754743.1| Ustilago maydis 521 hypothetical protein (UM03689.1) partial mRNA Length = 783 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 387 gaaatgcttccaagctgcca 406 |||||||||||||||||||| Sbjct: 375 gaaatgcttccaagctgcca 356
>ref|XM_539850.1| PREDICTED: Canis familiaris similar to taste receptor, type 2, member 41 (LOC482734), mRNA Length = 927 Score = 40.1 bits (20), Expect = 5.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 338 agaaggtggaagagttcaggaagtccca 365 ||||||||| ||||||||||||||||| Sbjct: 292 agaaggtggccgagttcaggaagtccca 265
>gb|AC124171.3| Mus musculus BAC clone RP23-167E23 from chromosome 13, complete sequence Length = 198242 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 266 ctccccactccctctccttc 285 |||||||||||||||||||| Sbjct: 173682 ctccccactccctctccttc 173663
>gb|AC124465.6| Mus musculus BAC clone RP24-156M16 from chromosome 13, complete sequence Length = 169973 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 266 ctccccactccctctccttc 285 |||||||||||||||||||| Sbjct: 130597 ctccccactccctctccttc 130616
>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence Length = 4895836 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 238 gaggccgacggcgacgcgctcgcc 261 ||||||| |||||||||||||||| Sbjct: 3731979 gaggccggcggcgacgcgctcgcc 3732002
>emb|AL939131.1|SCO939131 Streptomyces coelicolor A3(2) complete genome; segment 28/29 Length = 303550 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 238 gaggccgacggcgacgcgctcgcc 261 ||||||||||| |||||||||||| Sbjct: 132615 gaggccgacggtgacgcgctcgcc 132592
>emb|AL663007.2|OSJN00206 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0054B09, complete sequence Length = 146506 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 153 ggtggaggagacggcggtggtgga 176 |||||||||| ||||||||||||| Sbjct: 62908 ggtggaggagccggcggtggtgga 62931
>emb|AL662955.3|OSJN00158 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0019J05, complete sequence Length = 185211 Score = 40.1 bits (20), Expect = 5.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 149 gcgcggtggaggagacggcggtggtgga 176 |||||||||||| | ||||||||||||| Sbjct: 47263 gcgcggtggaggggccggcggtggtgga 47236
>emb|AL606506.11| Mouse DNA sequence from clone RP23-11A24 on chromosome 11 Contains a novel pseudogene and two CpG islands, complete sequence Length = 213971 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 266 ctccccactccctctccttc 285 |||||||||||||||||||| Sbjct: 686 ctccccactccctctccttc 705
>emb|AL671969.39| Mouse DNA sequence from clone RP23-339O7 on chromosome 11 Contains part of a novel gene and the Nmu2r gene for neuromedin U receptor 2, complete sequence Length = 118473 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 266 ctccccactccctctccttc 285 |||||||||||||||||||| Sbjct: 117159 ctccccactccctctccttc 117178
>gb|AC079874.21| Oryza sativa chromosome 10 BAC OSJNBa0042H09 genomic sequence, complete sequence Length = 144191 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 153 ggtggaggagacggcggtgg 172 |||||||||||||||||||| Sbjct: 57597 ggtggaggagacggcggtgg 57616
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 153 ggtggaggagacggcggtggtgga 176 |||||||||| ||||||||||||| Sbjct: 14225143 ggtggaggagccggcggtggtgga 14225166 Score = 40.1 bits (20), Expect = 5.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 149 gcgcggtggaggagacggcggtggtgga 176 |||||||||||| | ||||||||||||| Sbjct: 12222382 gcgcggtggaggggccggcggtggtgga 12222355
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 156 ggaggagacggcggtggtgg 175 |||||||||||||||||||| Sbjct: 25029410 ggaggagacggcggtggtgg 25029429
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 153 ggtggaggagacggcggtgg 172 |||||||||||||||||||| Sbjct: 28079688 ggtggaggagacggcggtgg 28079707
>gb|AC108865.3| Homo sapiens BAC clone RP11-11N5 from 4, complete sequence Length = 102733 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 266 ctccccactccctctccttc 285 |||||||||||||||||||| Sbjct: 22861 ctccccactccctctccttc 22880
>dbj|AP004839.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0519A12 Length = 156676 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 246 cggcgacgcgctcgccttcg 265 |||||||||||||||||||| Sbjct: 57612 cggcgacgcgctcgccttcg 57631
>dbj|AP005306.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0030D07 Length = 133321 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 246 cggcgacgcgctcgccttcg 265 |||||||||||||||||||| Sbjct: 114039 cggcgacgcgctcgccttcg 114058
>dbj|AK109732.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-146-C03, full insert sequence Length = 1258 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 153 ggtggaggagacggcggtgg 172 |||||||||||||||||||| Sbjct: 412 ggtggaggagacggcggtgg 431
>dbj|AK067828.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013120N01, full insert sequence Length = 790 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 246 cggcgacgcgctcgccttcg 265 |||||||||||||||||||| Sbjct: 145 cggcgacgcgctcgccttcg 164
>gb|AY615520.1| Chlamydomonas reinhardtii intraflagellar transport protein 172 (FLA11) mRNA, complete cds Length = 5904 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 293 gcctcaaggacatcgccgcc 312 |||||||||||||||||||| Sbjct: 4784 gcctcaaggacatcgccgcc 4803
>gb|AY105108.1| Zea mays PCO063262 mRNA sequence Length = 2090 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 151 gcggtggaggagacggcggtggtg 174 ||||||||||||| |||||||||| Sbjct: 204 gcggtggaggagaaggcggtggtg 227
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 238 gaggccgacggcgacgcgctcgcc 261 ||||||||||| |||||||||||| Sbjct: 387177 gaggccgacggtgacgcgctcgcc 387154
>emb|AJ890364.1| Emiliania huxleyi virus 86 isolate EhV86 Length = 407339 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 153 ggtggaggagacggcggtggtgga 176 ||||||||||| |||||||||||| Sbjct: 307994 ggtggaggagatggcggtggtgga 307971 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 153 ggtggaggagacggcggtggtgga 176 ||||||||||| |||||||||||| Sbjct: 307460 ggtggaggagatggcggtggtgga 307437
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 156 ggaggagacggcggtggtgg 175 |||||||||||||||||||| Sbjct: 25341000 ggaggagacggcggtggtgg 25341019
>dbj|AB249697.1| Canis familiaris DNA for bitter taste receptor, complete cds, clone: Cafa-T2R41 Length = 927 Score = 40.1 bits (20), Expect = 5.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 338 agaaggtggaagagttcaggaagtccca 365 ||||||||| ||||||||||||||||| Sbjct: 292 agaaggtggccgagttcaggaagtccca 265
>emb|AL672229.12| Mouse DNA sequence from clone RP23-335A6 on chromosome 17, complete sequence Length = 187977 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 260 ccttcgctccccactccctc 279 |||||||||||||||||||| Sbjct: 66877 ccttcgctccccactccctc 66896
>emb|AL844586.5| Mouse DNA sequence from clone RP23-259N17 on chromosome 2, complete sequence Length = 181467 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 207 gtcctccttccccttcctcc 226 |||||||||||||||||||| Sbjct: 145210 gtcctccttccccttcctcc 145229 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 207 gtcctccttccccttcctcc 226 |||||||||||||||||||| Sbjct: 145184 gtcctccttccccttcctcc 145203 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 207 gtcctccttccccttcctcc 226 |||||||||||||||||||| Sbjct: 145158 gtcctccttccccttcctcc 145177 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 207 gtcctccttccccttcctcc 226 |||||||||||||||||||| Sbjct: 145080 gtcctccttccccttcctcc 145099 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 207 gtcctccttccccttcctcc 226 |||||||||||||||||||| Sbjct: 145054 gtcctccttccccttcctcc 145073 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 207 gtcctccttccccttcctcc 226 |||||||||||||||||||| Sbjct: 144976 gtcctccttccccttcctcc 144995 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 207 gtcctccttccccttcctcc 226 |||||||||||||||||||| Sbjct: 144950 gtcctccttccccttcctcc 144969 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 207 gtcctccttccccttcctcc 226 |||||||||||||||||||| Sbjct: 144546 gtcctccttccccttcctcc 144565 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 207 gtcctccttccccttcctcc 226 |||||||||||||||||||| Sbjct: 144520 gtcctccttccccttcctcc 144539 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 207 gtcctccttccccttcctcc 226 |||||||||||||||||||| Sbjct: 144494 gtcctccttccccttcctcc 144513 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 207 gtcctccttccccttcctcc 226 |||||||||||||||||||| Sbjct: 144468 gtcctccttccccttcctcc 144487
>dbj|AB022673.1| Oryza sativa (japonica cultivar-group) rpl12-1 gene for chloroplast ribosomal protein L12, complete cds Length = 1944 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 153 ggtggaggagacggcggtgg 172 |||||||||||||||||||| Sbjct: 518 ggtggaggagacggcggtgg 499 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,215,872 Number of Sequences: 3902068 Number of extensions: 3215872 Number of successful extensions: 78012 Number of sequences better than 10.0: 69 Number of HSP's better than 10.0 without gapping: 72 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 76451 Number of HSP's gapped (non-prelim): 1549 length of query: 413 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 391 effective length of database: 17,147,199,772 effective search space: 6704555110852 effective search space used: 6704555110852 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
