ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd2h12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Y922_METJA (Q58332) Hypothetical protein MJ0922 39 0.012
2Y100_METJA (Q57564) Hypothetical protein MJ0100 38 0.026
3IMDH_METJA (Q59011) Inosine-5'-monophosphate dehydrogenase (EC 1... 36 0.076
4Y1426_METJA (Q58821) Hypothetical protein MJ1426 36 0.076
5IMDH_MYCLE (Q49729) Inosine-5'-monophosphate dehydrogenase (EC 1... 34 0.38
6IMDH_HELPY (P56088) Inosine-5'-monophosphate dehydrogenase (EC 1... 32 1.4
7IMDH_HELPJ (Q9ZL14) Inosine-5'-monophosphate dehydrogenase (EC 1... 32 1.4
8VGLX_EHV1B (P28968) Glycoprotein X precursor 32 1.9
9IMDH_MYCTU (P65167) Inosine-5'-monophosphate dehydrogenase (EC 1... 32 1.9
10IMDH_MYCBO (P65168) Inosine-5'-monophosphate dehydrogenase (EC 1... 32 1.9
11T3RE_SALTY (P40815) Type III restriction-modification system Sty... 32 1.9
12YBP3_ACIAM (P32987) Hypothetical 17.7 kDa protein in bps2 3'regi... 31 2.4
13IMDH_BACHD (Q9KGN8) Inosine-5'-monophosphate dehydrogenase (EC 1... 30 4.2
14STUB_DROME (Q05319) Serine proteinase stubble (EC 3.4.21.-) (Pro... 30 5.4
15PORB_METJA (Q57714) Pyruvate synthase subunit porB (EC 1.2.7.1) ... 30 5.4
16Y1404_METJA (Q58799) Hypothetical protein MJ1404 30 7.1
17PORB_METTH (O27771) Pyruvate synthase subunit porB (EC 1.2.7.1) ... 29 9.3

>Y922_METJA (Q58332) Hypothetical protein MJ0922|
          Length = 138

 Score = 38.9 bits (89), Expect = 0.012
 Identities = 26/97 (26%), Positives = 45/97 (46%), Gaps = 6/97 (6%)
 Frame = +2

Query: 323 DQHRGALLREAMSTPVLMATADQALVEVEGHF--QLVSGLPVVDSARRCVGVVVKSD--- 487
           D  +   +++ M+  V+ A   + +VE         +S LPV+D   + +G+V  +D   
Sbjct: 3   DTLKNIKVKDVMTKNVITAKRHEGVVEAFEKMLKYKISSLPVIDDENKVIGIVTTTDIGY 62

Query: 488 -RARASHGSRTKIADVMTSPAITLSCDKTVTDAAALM 595
              R  +   T I DVMT   IT+  D ++ +A   M
Sbjct: 63  NLIRDKYTLETTIGDVMTKDVITIHEDASILEAIKKM 99



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>Y100_METJA (Q57564) Hypothetical protein MJ0100|
          Length = 509

 Score = 37.7 bits (86), Expect = 0.026
 Identities = 24/89 (26%), Positives = 46/89 (51%), Gaps = 2/89 (2%)
 Frame = +2

Query: 341 LLREAMSTPVLMATADQALVEVEGHF--QLVSGLPVVDSARRCVGVVVKSDRARASHGSR 514
           L+++ +S P + A ++ +++E         ++ LP+VD   + VG++   D A+A   ++
Sbjct: 389 LVKDILSKPPITAHSNISIMEAAKILIKHNINHLPIVDEHGKLVGIITSWDIAKALAQNK 448

Query: 515 TKIADVMTSPAITLSCDKTVTDAAALMLK 601
             I ++MT   IT   D+ V   A  M K
Sbjct: 449 KTIEEIMTRNVITAHEDEPVDHVAIKMSK 477



 Score = 34.3 bits (77), Expect = 0.29
 Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
 Frame = +2

Query: 344 LREAMSTPVLMATADQAL--VEVEGHFQLVSGLPVVDSARRCVGVVVKSDRARASHGSR 514
           + E M+  V+ A  D+ +  V ++     +SG+PVVD  RR VG+V   D +R   G +
Sbjct: 451 IEEIMTRNVITAHEDEPVDHVAIKMSKYNISGVPVVDDYRRVVGIVTSEDISRLFGGKK 509



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>IMDH_METJA (Q59011) Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205) (IMP|
           dehydrogenase) (IMPDH) (IMPD)
          Length = 496

 Score = 36.2 bits (82), Expect = 0.076
 Identities = 20/57 (35%), Positives = 29/57 (50%)
 Frame = +2

Query: 425 VSGLPVVDSARRCVGVVVKSDRARASHGSRTKIADVMTSPAITLSCDKTVTDAAALM 595
           +SGLPVVD+  + VG++   D  +A      K+ DVMT   +    D    +A  LM
Sbjct: 121 ISGLPVVDNEDKLVGIITHRD-VKAIEDKTKKVKDVMTKDVVCAKEDVEEEEALELM 176



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>Y1426_METJA (Q58821) Hypothetical protein MJ1426|
          Length = 168

 Score = 36.2 bits (82), Expect = 0.076
 Identities = 30/125 (24%), Positives = 52/125 (41%), Gaps = 38/125 (30%)
 Frame = +2

Query: 341 LLREAMSTPVLMATADQALVEVEGHFQL--VSGLPVVDSARRCVGVVVKSDRARA----- 499
           L+++ M  P+++   D  L++V   F+   +SG PV++   + VG++ +SD  +      
Sbjct: 16  LIKDIMKKPIVVYE-DNDLIDVIRLFRKNKISGAPVLNKDGKLVGIISESDIVKTIVTHN 74

Query: 500 -------------------------------SHGSRTKIADVMTSPAITLSCDKTVTDAA 586
                                           +  +TK+ DVMT   I    D T+ DAA
Sbjct: 75  EDLNLILPSPLDLIELPLKTALKIEEFMEDLKNALKTKVRDVMTRKVIVAKPDMTINDAA 134

Query: 587 ALMLK 601
            LM+K
Sbjct: 135 KLMVK 139



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>IMDH_MYCLE (Q49729) Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205) (IMP|
           dehydrogenase) (IMPDH) (IMPD)
          Length = 529

 Score = 33.9 bits (76), Expect = 0.38
 Identities = 18/60 (30%), Positives = 31/60 (51%)
 Frame = +2

Query: 425 VSGLPVVDSARRCVGVVVKSDRARASHGSRTKIADVMTSPAITLSCDKTVTDAAALMLKK 604
           +SGLPVVD +    G++   D  R       ++A+VMT   +  + +    DAA  +L++
Sbjct: 154 ISGLPVVDDSGALAGIITNRD-MRFEVDQSKQVAEVMTKTPLITAAEGVSADAALGLLRR 212



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>IMDH_HELPY (P56088) Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205) (IMP|
           dehydrogenase) (IMPDH) (IMPD)
          Length = 481

 Score = 32.0 bits (71), Expect = 1.4
 Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = +2

Query: 425 VSGLPVVDSARRCVGVVVKSDRARASHGSRTKIADVMTS-PAITLSCDKTVTDAAALMLK 601
           +SG+PVVD     +G++   D  R       K+ DVMT  P +T     ++ +A+ LM K
Sbjct: 117 ISGVPVVDDKGLLIGILTNRD-VRFETDLSKKVGDVMTKMPLVTAHVGISLDEASDLMHK 175



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>IMDH_HELPJ (Q9ZL14) Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205) (IMP|
           dehydrogenase) (IMPDH) (IMPD)
          Length = 481

 Score = 32.0 bits (71), Expect = 1.4
 Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = +2

Query: 425 VSGLPVVDSARRCVGVVVKSDRARASHGSRTKIADVMTS-PAITLSCDKTVTDAAALMLK 601
           +SG+PVVD     +G++   D  R       K+ DVMT  P +T     ++ +A+ LM K
Sbjct: 117 ISGVPVVDDKGLLIGILTNRD-VRFETDLSKKVGDVMTKMPLVTAHVGISLDEASDLMHK 175



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>VGLX_EHV1B (P28968) Glycoprotein X precursor|
          Length = 797

 Score = 31.6 bits (70), Expect = 1.9
 Identities = 28/91 (30%), Positives = 36/91 (39%), Gaps = 7/91 (7%)
 Frame = -1

Query: 585 AASVTVLSHDSVIAGDVITSAIFVLDPCEALARSLLTTTPTHRRALSTTGRP---DTSWK 415
           AA+ T  +  +       T+A        A   +  TTT     A +TTG P    TS  
Sbjct: 212 AATTTAATTTAATTSSATTAATTTAATTTAATTTAATTTAATTTAATTTGSPTSGSTSTT 271

Query: 414 CPSTST----SAWSAVAISTGVDMASRRSAP 334
             STST    +A SA   ST    A+  S P
Sbjct: 272 GASTSTPSASTATSATPTSTSTSAAATTSTP 302



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>IMDH_MYCTU (P65167) Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205) (IMP|
           dehydrogenase) (IMPDH) (IMPD)
          Length = 529

 Score = 31.6 bits (70), Expect = 1.9
 Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 3/84 (3%)
 Frame = +2

Query: 356 MSTPVLMATADQALVEVEG---HFQLVSGLPVVDSARRCVGVVVKSDRARASHGSRTKIA 526
           M T  +    D  L +V+     F+ +SGLPVVD     VG++   D  R       ++A
Sbjct: 129 MVTDPVTCRPDNTLAQVDALCARFR-ISGLPVVDDDGALVGIITNRD-MRFEVDQSKQVA 186

Query: 527 DVMTSPAITLSCDKTVTDAAALML 598
           +VMT  A  ++  + V+ +AAL L
Sbjct: 187 EVMTK-APLITAQEGVSASAALGL 209



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>IMDH_MYCBO (P65168) Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205) (IMP|
           dehydrogenase) (IMPDH) (IMPD)
          Length = 529

 Score = 31.6 bits (70), Expect = 1.9
 Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 3/84 (3%)
 Frame = +2

Query: 356 MSTPVLMATADQALVEVEG---HFQLVSGLPVVDSARRCVGVVVKSDRARASHGSRTKIA 526
           M T  +    D  L +V+     F+ +SGLPVVD     VG++   D  R       ++A
Sbjct: 129 MVTDPVTCRPDNTLAQVDALCARFR-ISGLPVVDDDGALVGIITNRD-MRFEVDQSKQVA 186

Query: 527 DVMTSPAITLSCDKTVTDAAALML 598
           +VMT  A  ++  + V+ +AAL L
Sbjct: 187 EVMTK-APLITAQEGVSASAALGL 209



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>T3RE_SALTY (P40815) Type III restriction-modification system StyLTI enzyme res|
           (EC 3.1.21.5)
          Length = 990

 Score = 31.6 bits (70), Expect = 1.9
 Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +2

Query: 167 GSGLRLGLDENPDAIISGEWPENFS-LLSYDD 259
           G GLRL +DEN   +   EWP   S L+ YD+
Sbjct: 534 GRGLRLPVDENGHRVHQEEWPSRLSFLIGYDE 565



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>YBP3_ACIAM (P32987) Hypothetical 17.7 kDa protein in bps2 3'region (ORF3)|
          Length = 164

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
 Frame = +2

Query: 380 TADQALVEVEGHFQLVSGLPVVDSARRCVGVVVKSD--RARASHGSRTKIADVMTSPAIT 553
           T  +A  E++ H   +  L V+DS  R VG++ + D  +A ++    + +   MT     
Sbjct: 21  TIAEAAKEMKEHN--LGSLVVIDSQNRVVGIITERDIVKAASNRDIDSPVEKYMTKDVKG 78

Query: 554 LSCDKTVTDAAALML 598
           ++ D  VTDA  +ML
Sbjct: 79  VTEDTEVTDALDIML 93



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>IMDH_BACHD (Q9KGN8) Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205) (IMP|
           dehydrogenase) (IMPDH) (IMPD)
          Length = 485

 Score = 30.4 bits (67), Expect = 4.2
 Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = +2

Query: 425 VSGLPVVDSARRCVGVVVKSDRARASHGSRTKIADVMTSP-AITLSCDKTVTDAAALMLK 601
           +SG+P+VD  ++ VG++   D  R      T I DVMT    +T     T+ +A  ++ K
Sbjct: 120 ISGVPIVDEDQKLVGILTNRD-LRFIEDYSTLIDDVMTKENLVTAPVGTTLKEAEEILQK 178



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>STUB_DROME (Q05319) Serine proteinase stubble (EC 3.4.21.-) (Protein|
           stubble-stubbloid) [Contains: Serine proteinase stubble
           non-catalytic chain; Serine proteinase stubble catalytic
           chain]
          Length = 787

 Score = 30.0 bits (66), Expect = 5.4
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = -1

Query: 477 TTTPTHRRALSTTGRPDTSWKCPSTSTSAWSAVAISTGVDMASR 346
           TTTPT     +TT +P   ++ P+T+TS+ S    S+     +R
Sbjct: 426 TTTPTTTTRRTTTNKPTRPYQRPTTATSSSSTSTTSSKTPTTTR 469



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>PORB_METJA (Q57714) Pyruvate synthase subunit porB (EC 1.2.7.1) (Pyruvate|
           oxidoreductase beta chain) (POR) (Pyruvic-ferredoxin
           oxidoreductase beta subunit)
          Length = 298

 Score = 30.0 bits (66), Expect = 5.4
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = -1

Query: 489 RSLLTTTPTHRRALSTTGRPDTSWKCPSTSTSAWSAVAISTGVDMA 352
           +  + T  T    + TT  P+TSW+ P   T+  +A A ++G++ A
Sbjct: 37  KDTIITNATGCLEVMTTPYPETSWRVPWIHTAFENAAATASGIEAA 82



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>Y1404_METJA (Q58799) Hypothetical protein MJ1404|
          Length = 421

 Score = 29.6 bits (65), Expect = 7.1
 Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
 Frame = +2

Query: 437 PVVDSARRCVGVVVKSD-RARASHGS---RTKIADVMTSPAITLSCDKTVTDAAALM 595
           P+V++  + VG++   D  ARA+       TK+  +MT   IT++ + ++  A ALM
Sbjct: 103 PIVNNVGKMVGIITDYDIMARAAKSKIMKDTKVTKIMTRNVITINENDSIGKARALM 159



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>PORB_METTH (O27771) Pyruvate synthase subunit porB (EC 1.2.7.1) (Pyruvate|
           oxidoreductase beta chain) (POR) (Pyruvic-ferredoxin
           oxidoreductase beta subunit)
          Length = 288

 Score = 29.3 bits (64), Expect = 9.3
 Identities = 13/50 (26%), Positives = 28/50 (56%)
 Frame = -1

Query: 501 EALARSLLTTTPTHRRALSTTGRPDTSWKCPSTSTSAWSAVAISTGVDMA 352
           + L ++ +  + T    + TT  P+T+W+ P    +  +A A+++GV+ A
Sbjct: 30  KVLGKNTVAVSSTGCLEVITTPYPETAWRIPWIHVAFENAAAVASGVERA 79


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,239,201
Number of Sequences: 219361
Number of extensions: 879860
Number of successful extensions: 2753
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 2621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2745
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5367617986
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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