ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd2h12 |
|---|---|
| Clone Library Name | barley_pub |
>Y922_METJA (Q58332) Hypothetical protein MJ0922| Length = 138 Score = 38.9 bits (89), Expect = 0.012 Identities = 26/97 (26%), Positives = 45/97 (46%), Gaps = 6/97 (6%) Frame = +2 Query: 323 DQHRGALLREAMSTPVLMATADQALVEVEGHF--QLVSGLPVVDSARRCVGVVVKSD--- 487 D + +++ M+ V+ A + +VE +S LPV+D + +G+V +D Sbjct: 3 DTLKNIKVKDVMTKNVITAKRHEGVVEAFEKMLKYKISSLPVIDDENKVIGIVTTTDIGY 62 Query: 488 -RARASHGSRTKIADVMTSPAITLSCDKTVTDAAALM 595 R + T I DVMT IT+ D ++ +A M Sbjct: 63 NLIRDKYTLETTIGDVMTKDVITIHEDASILEAIKKM 99
>Y100_METJA (Q57564) Hypothetical protein MJ0100| Length = 509 Score = 37.7 bits (86), Expect = 0.026 Identities = 24/89 (26%), Positives = 46/89 (51%), Gaps = 2/89 (2%) Frame = +2 Query: 341 LLREAMSTPVLMATADQALVEVEGHF--QLVSGLPVVDSARRCVGVVVKSDRARASHGSR 514 L+++ +S P + A ++ +++E ++ LP+VD + VG++ D A+A ++ Sbjct: 389 LVKDILSKPPITAHSNISIMEAAKILIKHNINHLPIVDEHGKLVGIITSWDIAKALAQNK 448 Query: 515 TKIADVMTSPAITLSCDKTVTDAAALMLK 601 I ++MT IT D+ V A M K Sbjct: 449 KTIEEIMTRNVITAHEDEPVDHVAIKMSK 477 Score = 34.3 bits (77), Expect = 0.29 Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 2/59 (3%) Frame = +2 Query: 344 LREAMSTPVLMATADQAL--VEVEGHFQLVSGLPVVDSARRCVGVVVKSDRARASHGSR 514 + E M+ V+ A D+ + V ++ +SG+PVVD RR VG+V D +R G + Sbjct: 451 IEEIMTRNVITAHEDEPVDHVAIKMSKYNISGVPVVDDYRRVVGIVTSEDISRLFGGKK 509
>IMDH_METJA (Q59011) Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205) (IMP| dehydrogenase) (IMPDH) (IMPD) Length = 496 Score = 36.2 bits (82), Expect = 0.076 Identities = 20/57 (35%), Positives = 29/57 (50%) Frame = +2 Query: 425 VSGLPVVDSARRCVGVVVKSDRARASHGSRTKIADVMTSPAITLSCDKTVTDAAALM 595 +SGLPVVD+ + VG++ D +A K+ DVMT + D +A LM Sbjct: 121 ISGLPVVDNEDKLVGIITHRD-VKAIEDKTKKVKDVMTKDVVCAKEDVEEEEALELM 176
>Y1426_METJA (Q58821) Hypothetical protein MJ1426| Length = 168 Score = 36.2 bits (82), Expect = 0.076 Identities = 30/125 (24%), Positives = 52/125 (41%), Gaps = 38/125 (30%) Frame = +2 Query: 341 LLREAMSTPVLMATADQALVEVEGHFQL--VSGLPVVDSARRCVGVVVKSDRARA----- 499 L+++ M P+++ D L++V F+ +SG PV++ + VG++ +SD + Sbjct: 16 LIKDIMKKPIVVYE-DNDLIDVIRLFRKNKISGAPVLNKDGKLVGIISESDIVKTIVTHN 74 Query: 500 -------------------------------SHGSRTKIADVMTSPAITLSCDKTVTDAA 586 + +TK+ DVMT I D T+ DAA Sbjct: 75 EDLNLILPSPLDLIELPLKTALKIEEFMEDLKNALKTKVRDVMTRKVIVAKPDMTINDAA 134 Query: 587 ALMLK 601 LM+K Sbjct: 135 KLMVK 139
>IMDH_MYCLE (Q49729) Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205) (IMP| dehydrogenase) (IMPDH) (IMPD) Length = 529 Score = 33.9 bits (76), Expect = 0.38 Identities = 18/60 (30%), Positives = 31/60 (51%) Frame = +2 Query: 425 VSGLPVVDSARRCVGVVVKSDRARASHGSRTKIADVMTSPAITLSCDKTVTDAAALMLKK 604 +SGLPVVD + G++ D R ++A+VMT + + + DAA +L++ Sbjct: 154 ISGLPVVDDSGALAGIITNRD-MRFEVDQSKQVAEVMTKTPLITAAEGVSADAALGLLRR 212
>IMDH_HELPY (P56088) Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205) (IMP| dehydrogenase) (IMPDH) (IMPD) Length = 481 Score = 32.0 bits (71), Expect = 1.4 Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 1/60 (1%) Frame = +2 Query: 425 VSGLPVVDSARRCVGVVVKSDRARASHGSRTKIADVMTS-PAITLSCDKTVTDAAALMLK 601 +SG+PVVD +G++ D R K+ DVMT P +T ++ +A+ LM K Sbjct: 117 ISGVPVVDDKGLLIGILTNRD-VRFETDLSKKVGDVMTKMPLVTAHVGISLDEASDLMHK 175
>IMDH_HELPJ (Q9ZL14) Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205) (IMP| dehydrogenase) (IMPDH) (IMPD) Length = 481 Score = 32.0 bits (71), Expect = 1.4 Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 1/60 (1%) Frame = +2 Query: 425 VSGLPVVDSARRCVGVVVKSDRARASHGSRTKIADVMTS-PAITLSCDKTVTDAAALMLK 601 +SG+PVVD +G++ D R K+ DVMT P +T ++ +A+ LM K Sbjct: 117 ISGVPVVDDKGLLIGILTNRD-VRFETDLSKKVGDVMTKMPLVTAHVGISLDEASDLMHK 175
>VGLX_EHV1B (P28968) Glycoprotein X precursor| Length = 797 Score = 31.6 bits (70), Expect = 1.9 Identities = 28/91 (30%), Positives = 36/91 (39%), Gaps = 7/91 (7%) Frame = -1 Query: 585 AASVTVLSHDSVIAGDVITSAIFVLDPCEALARSLLTTTPTHRRALSTTGRP---DTSWK 415 AA+ T + + T+A A + TTT A +TTG P TS Sbjct: 212 AATTTAATTTAATTSSATTAATTTAATTTAATTTAATTTAATTTAATTTGSPTSGSTSTT 271 Query: 414 CPSTST----SAWSAVAISTGVDMASRRSAP 334 STST +A SA ST A+ S P Sbjct: 272 GASTSTPSASTATSATPTSTSTSAAATTSTP 302
>IMDH_MYCTU (P65167) Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205) (IMP| dehydrogenase) (IMPDH) (IMPD) Length = 529 Score = 31.6 bits (70), Expect = 1.9 Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 3/84 (3%) Frame = +2 Query: 356 MSTPVLMATADQALVEVEG---HFQLVSGLPVVDSARRCVGVVVKSDRARASHGSRTKIA 526 M T + D L +V+ F+ +SGLPVVD VG++ D R ++A Sbjct: 129 MVTDPVTCRPDNTLAQVDALCARFR-ISGLPVVDDDGALVGIITNRD-MRFEVDQSKQVA 186 Query: 527 DVMTSPAITLSCDKTVTDAAALML 598 +VMT A ++ + V+ +AAL L Sbjct: 187 EVMTK-APLITAQEGVSASAALGL 209
>IMDH_MYCBO (P65168) Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205) (IMP| dehydrogenase) (IMPDH) (IMPD) Length = 529 Score = 31.6 bits (70), Expect = 1.9 Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 3/84 (3%) Frame = +2 Query: 356 MSTPVLMATADQALVEVEG---HFQLVSGLPVVDSARRCVGVVVKSDRARASHGSRTKIA 526 M T + D L +V+ F+ +SGLPVVD VG++ D R ++A Sbjct: 129 MVTDPVTCRPDNTLAQVDALCARFR-ISGLPVVDDDGALVGIITNRD-MRFEVDQSKQVA 186 Query: 527 DVMTSPAITLSCDKTVTDAAALML 598 +VMT A ++ + V+ +AAL L Sbjct: 187 EVMTK-APLITAQEGVSASAALGL 209
>T3RE_SALTY (P40815) Type III restriction-modification system StyLTI enzyme res| (EC 3.1.21.5) Length = 990 Score = 31.6 bits (70), Expect = 1.9 Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 1/32 (3%) Frame = +2 Query: 167 GSGLRLGLDENPDAIISGEWPENFS-LLSYDD 259 G GLRL +DEN + EWP S L+ YD+ Sbjct: 534 GRGLRLPVDENGHRVHQEEWPSRLSFLIGYDE 565
>YBP3_ACIAM (P32987) Hypothetical 17.7 kDa protein in bps2 3'region (ORF3)| Length = 164 Score = 31.2 bits (69), Expect = 2.4 Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 2/75 (2%) Frame = +2 Query: 380 TADQALVEVEGHFQLVSGLPVVDSARRCVGVVVKSD--RARASHGSRTKIADVMTSPAIT 553 T +A E++ H + L V+DS R VG++ + D +A ++ + + MT Sbjct: 21 TIAEAAKEMKEHN--LGSLVVIDSQNRVVGIITERDIVKAASNRDIDSPVEKYMTKDVKG 78 Query: 554 LSCDKTVTDAAALML 598 ++ D VTDA +ML Sbjct: 79 VTEDTEVTDALDIML 93
>IMDH_BACHD (Q9KGN8) Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205) (IMP| dehydrogenase) (IMPDH) (IMPD) Length = 485 Score = 30.4 bits (67), Expect = 4.2 Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 1/60 (1%) Frame = +2 Query: 425 VSGLPVVDSARRCVGVVVKSDRARASHGSRTKIADVMTSP-AITLSCDKTVTDAAALMLK 601 +SG+P+VD ++ VG++ D R T I DVMT +T T+ +A ++ K Sbjct: 120 ISGVPIVDEDQKLVGILTNRD-LRFIEDYSTLIDDVMTKENLVTAPVGTTLKEAEEILQK 178
>STUB_DROME (Q05319) Serine proteinase stubble (EC 3.4.21.-) (Protein| stubble-stubbloid) [Contains: Serine proteinase stubble non-catalytic chain; Serine proteinase stubble catalytic chain] Length = 787 Score = 30.0 bits (66), Expect = 5.4 Identities = 15/44 (34%), Positives = 24/44 (54%) Frame = -1 Query: 477 TTTPTHRRALSTTGRPDTSWKCPSTSTSAWSAVAISTGVDMASR 346 TTTPT +TT +P ++ P+T+TS+ S S+ +R Sbjct: 426 TTTPTTTTRRTTTNKPTRPYQRPTTATSSSSTSTTSSKTPTTTR 469
>PORB_METJA (Q57714) Pyruvate synthase subunit porB (EC 1.2.7.1) (Pyruvate| oxidoreductase beta chain) (POR) (Pyruvic-ferredoxin oxidoreductase beta subunit) Length = 298 Score = 30.0 bits (66), Expect = 5.4 Identities = 14/46 (30%), Positives = 25/46 (54%) Frame = -1 Query: 489 RSLLTTTPTHRRALSTTGRPDTSWKCPSTSTSAWSAVAISTGVDMA 352 + + T T + TT P+TSW+ P T+ +A A ++G++ A Sbjct: 37 KDTIITNATGCLEVMTTPYPETSWRVPWIHTAFENAAATASGIEAA 82
>Y1404_METJA (Q58799) Hypothetical protein MJ1404| Length = 421 Score = 29.6 bits (65), Expect = 7.1 Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 4/57 (7%) Frame = +2 Query: 437 PVVDSARRCVGVVVKSD-RARASHGS---RTKIADVMTSPAITLSCDKTVTDAAALM 595 P+V++ + VG++ D ARA+ TK+ +MT IT++ + ++ A ALM Sbjct: 103 PIVNNVGKMVGIITDYDIMARAAKSKIMKDTKVTKIMTRNVITINENDSIGKARALM 159
>PORB_METTH (O27771) Pyruvate synthase subunit porB (EC 1.2.7.1) (Pyruvate| oxidoreductase beta chain) (POR) (Pyruvic-ferredoxin oxidoreductase beta subunit) Length = 288 Score = 29.3 bits (64), Expect = 9.3 Identities = 13/50 (26%), Positives = 28/50 (56%) Frame = -1 Query: 501 EALARSLLTTTPTHRRALSTTGRPDTSWKCPSTSTSAWSAVAISTGVDMA 352 + L ++ + + T + TT P+T+W+ P + +A A+++GV+ A Sbjct: 30 KVLGKNTVAVSSTGCLEVITTPYPETAWRIPWIHVAFENAAAVASGVERA 79 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 57,239,201 Number of Sequences: 219361 Number of extensions: 879860 Number of successful extensions: 2753 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 2621 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2745 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5367617986 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
