ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd2h09 |
|---|---|
| Clone Library Name | barley_pub |
>gb|M55447.1|BLYRCAA2 Hordeum vulgare rubisco activase (RcaA2) mRNA, complete cds Length = 1709 Score = 920 bits (464), Expect = 0.0 Identities = 480/484 (99%), Gaps = 1/484 (0%) Strand = Plus / Plus Query: 1 ggcagcggagaacatcgacgagaagaggaacaccgacaagtggaagggtcttgcgtacga 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 282 ggcagcggagaacatcgacgagaagaggaacaccgacaagtggaagggtcttgctaccga 341 Query: 61 tatctccgacgaccagcaggacatcaccagagggaagggcatcgtggactcgctcttcca 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 342 tatctccgacgaccagcaggacatcaccagagggaagggcatcgtggactcgctcttcca 401 Query: 121 ggcgcccacgggcgacggcacccacgaggccgtcctcagctcctacgagtacgtcagcca 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 402 ggcgcccacgggcgacggcacccacgaggccgtcctcagctcctacgagtacgtcagcca 461 Query: 181 gggcctgcggaagtacgacttcgacaacaccatgggaggcttctacatcgctcctgcttt 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 462 gggcctgcggaagtacgacttcgacaacaccatgggaggcttctacatcgctcctgcttt 521 Query: 241 catggacaagcttgttgtccatctctccaaaaacttcatgaccctgcccaacatcaagat 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 522 catggacaagcttgttgtccatctctccaaaaacttcatgaccctgcccaacatcaagat 581 Query: 301 cccactcatcttgggtatctggggaggcaagggtcaaggaaaatcattccagtgtgagct 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 582 cccactcatcttgggtatctggggaggcaagggtcaaggaaaatcattccagtgtgagct 641 Query: 361 tgtgttcgccaagatgggcatcaaccccatcatgatgagtgccggagagctgggagagtg 420 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 642 tgtgttcgccaagatgggcatcaaccccatcatgatgagtgccggagagct-ggagagtg 700 Query: 421 ggaacgctggagagccagccaagctcatcaggcagcggtaccgtgaggctgcagacatga 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 701 ggaacgctggagagccagccaagctcatcaggcagcggtaccgtgaggctgcagacatga 760 Query: 481 tcaa 484 |||| Sbjct: 761 tcaa 764
>gb|M55446.1|BLYRCAA1 Hordeum vulgare rubisco activase (RcaA1) mRNA, 3' end Length = 1394 Score = 920 bits (464), Expect = 0.0 Identities = 480/484 (99%), Gaps = 1/484 (0%) Strand = Plus / Plus Query: 1 ggcagcggagaacatcgacgagaagaggaacaccgacaagtggaagggtcttgcgtacga 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 27 ggcagcggagaacatcgacgagaagaggaacaccgacaagtggaagggtcttgctaccga 86 Query: 61 tatctccgacgaccagcaggacatcaccagagggaagggcatcgtggactcgctcttcca 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 87 tatctccgacgaccagcaggacatcaccagagggaagggcatcgtggactcgctcttcca 146 Query: 121 ggcgcccacgggcgacggcacccacgaggccgtcctcagctcctacgagtacgtcagcca 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 147 ggcgcccacgggcgacggcacccacgaggccgtcctcagctcctacgagtacgtcagcca 206 Query: 181 gggcctgcggaagtacgacttcgacaacaccatgggaggcttctacatcgctcctgcttt 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 207 gggcctgcggaagtacgacttcgacaacaccatgggaggcttctacatcgctcctgcttt 266 Query: 241 catggacaagcttgttgtccatctctccaaaaacttcatgaccctgcccaacatcaagat 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 267 catggacaagcttgttgtccatctctccaaaaacttcatgaccctgcccaacatcaagat 326 Query: 301 cccactcatcttgggtatctggggaggcaagggtcaaggaaaatcattccagtgtgagct 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 327 cccactcatcttgggtatctggggaggcaagggtcaaggaaaatcattccagtgtgagct 386 Query: 361 tgtgttcgccaagatgggcatcaaccccatcatgatgagtgccggagagctgggagagtg 420 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 387 tgtgttcgccaagatgggcatcaaccccatcatgatgagtgccggagagct-ggagagtg 445 Query: 421 ggaacgctggagagccagccaagctcatcaggcagcggtaccgtgaggctgcagacatga 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 446 ggaacgctggagagccagccaagctcatcaggcagcggtaccgtgaggctgcagacatga 505 Query: 481 tcaa 484 |||| Sbjct: 506 tcaa 509
>gb|BC029790.1| Homo sapiens, clone IMAGE:5192697, mRNA Length = 1643 Score = 833 bits (420), Expect = 0.0 Identities = 469/484 (96%), Gaps = 1/484 (0%) Strand = Plus / Plus Query: 1 ggcagcggagaacatcgacgagaagaggaacaccgacaagtggaagggtcttgcgtacga 60 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 202 ggcagcggaaaacatcgacgagaagaggaacaccgacaagtggaagggtcttgcgtacga 261 Query: 61 tatctccgacgaccagcaggacatcaccagagggaagggcatcgtggactcgctcttcca 120 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 262 tatctccgacgaccagcaggacatcaccagagggaagggcatcgtggactccctcttcca 321 Query: 121 ggcgcccacgggcgacggcacccacgaggccgtcctcagctcctacgagtacgtcagcca 180 ||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 322 ggcgcccactggcgacggcacccacgaggccgtcctcagctcatacgagtacgtcagcca 381 Query: 181 gggcctgcggaagtacgacttcgacaacaccatgggaggcttctacatcgctcctgcttt 240 ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 382 gggactcaagaagtacgacttcgacaacaccatgggaggcttctacatcgctcctgcttt 441 Query: 241 catggacaagcttgttgtccatctctccaaaaacttcatgaccctgcccaacatcaagat 300 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 442 catggacaagcttgttgtccatctctccaagaacttcatgaccctgcccaacatcaagat 501 Query: 301 cccactcatcttgggtatctggggaggcaagggtcaaggaaaatcattccagtgtgagct 360 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 502 cccactcatcttgggtatctggggaggcaagggtcaaggaaaatccttccagtgtgagct 561 Query: 361 tgtgttcgccaagatgggcatcaaccccatcatgatgagtgccggagagctgggagagtg 420 ||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| Sbjct: 562 tgtcttcgccaagatgggcatcaacccaatcatgatgagtgccggagagct-ggagagtg 620 Query: 421 ggaacgctggagagccagccaagctcatcaggcagcggtaccgtgaggctgcagacatga 480 | ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 621 gcaacgccggagagccagccaagctcatcaggcagcggtaccgtgaggctgcagacatga 680 Query: 481 tcaa 484 |||| Sbjct: 681 tcaa 684
>gb|AY312573.1| Deschampsia antarctica Rubisco activase alpha form precursor (RCA1) mRNA, complete cds; nuclear gene for chloroplast product Length = 1616 Score = 638 bits (322), Expect = e-180 Identities = 419/450 (93%), Gaps = 1/450 (0%) Strand = Plus / Plus Query: 35 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 94 |||||||||||||| || || ||||||||||||||||||||||||||||||||||| || Sbjct: 257 gacaagtggaagggcctcgcctacgatatctccgacgaccagcaggacatcaccaggggt 316 Query: 95 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 154 ||||| ||||| ||||| || ||||||||||||| |||||| |||||||||||||||||| Sbjct: 317 aagggtatcgtcgactccctgttccaggcgcccatgggcgatggcacccacgaggccgtc 376 Query: 155 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 214 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 377 ctcagctcctacgagtacgtcagccagggcctcaagaagtacgacttcgacaacaccatg 436 Query: 215 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 274 ||||||||||||||||| || ||||||||||||||||| |||||||| |||||||| ||| Sbjct: 437 ggaggcttctacatcgccccggctttcatggacaagctcgttgtccacctctccaagaac 496 Query: 275 ttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggt 334 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 497 ttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggaaagggt 556 Query: 335 caaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatg 394 || || ||||| ||||||||||||||||| ||||||||||||||||||||||| |||||| Sbjct: 557 caggggaaatccttccagtgtgagcttgtcttcgccaagatgggcatcaacccaatcatg 616 Query: 395 atgagtgccggagagctgggagagtgggaacgctggagagccagccaagctcatcaggca 454 ||||||||||||||||| |||||| || ||||| |||||||||||||||||||||||||| Sbjct: 617 atgagtgccggagagct-ggagagcggcaacgccggagagccagccaagctcatcaggca 675 Query: 455 gcggtaccgtgaggctgcagacatgatcaa 484 ||||||||| ||||| |||||||||||||| Sbjct: 676 gcggtaccgcgaggccgcagacatgatcaa 705
>gb|AY312574.1| Deschampsia antarctica Rubisco activase beta form precursor (RCA2) mRNA, complete cds; nuclear gene for chloroplast product Length = 1646 Score = 618 bits (312), Expect = e-174 Identities = 416/450 (92%), Gaps = 1/450 (0%) Strand = Plus / Plus Query: 35 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 94 |||||||||||||| || || ||||||||||||||||||||||||||||||||||| || Sbjct: 247 gacaagtggaagggcctcgcctacgatatctccgacgaccagcaggacatcaccaggggt 306 Query: 95 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 154 ||||| ||||| ||||| | ||||||||||||| |||||| || ||||||||||||||| Sbjct: 307 aagggtatcgtcgactccttgttccaggcgcccatgggcgatggnacccacgaggccgtc 366 Query: 155 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 214 |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 367 ctcagctcntacgagtacgtcagccagggcctcaagaagtacgacttcgacaacaccatg 426 Query: 215 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 274 ||||||||||||||||| || ||||||||||||||||| |||||||| |||||||| ||| Sbjct: 427 ggaggcttctacatcgccccggctttcatggacaagctcgttgtccacctctccaagaac 486 Query: 275 ttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggt 334 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 487 ttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggaaagggt 546 Query: 335 caaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatg 394 || || ||||| ||||||||||||||||| ||||||||||||||||||||||| |||||| Sbjct: 547 caggggaaatccttccagtgtgagcttgtcttcgccaagatgggcatcaacccaatcatg 606 Query: 395 atgagtgccggagagctgggagagtgggaacgctggagagccagccaagctcatcaggca 454 ||||||||||||||||| |||||| || ||||| |||||||||||||||||||||||||| Sbjct: 607 atgagtgccggagagct-ggagagcggcaacgccggagagccagccaagctcatcaggca 665 Query: 455 gcggtaccgtgaggctgcagacatgatcaa 484 ||||||||| ||||| |||||||||||||| Sbjct: 666 gcggtaccgcgaggccgcagacatgatcaa 695
>gb|M55449.1|BLYRCABG Hordeum vulgare subsp. vulgare ribulose 1,5-bisphosphate carboxylase activase (RcaB) gene, complete cds; and ribulose 1,5-bisphosphate carboxylase activase (RcaA) gene, alternatively spliced, complete cds Length = 8766 Score = 575 bits (290), Expect = e-161 Identities = 296/298 (99%) Strand = Plus / Plus Query: 1 ggcagcggagaacatcgacgagaagaggaacaccgacaagtggaagggtcttgcgtacga 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5623 ggcagcggagaacatcgacgagaagaggaacaccgacaagtggaagggtcttgcgtacga 5682 Query: 61 tatctccgacgaccagcaggacatcaccagagggaagggcatcgtggactcgctcttcca 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5683 tatctccgacgaccagcaggacatcaccagagggaagggcatcgtggactcgctcttcca 5742 Query: 121 ggcgcccacgggcgacggcacccacgaggccgtcctcagctcctacgagtacgtcagcca 180 |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5743 ggcgcccacggggcacggcacccacgaggccgtcctcagctcctacgagtacgtcagcca 5802 Query: 181 gggcctgcggaagtacgacttcgacaacaccatgggaggcttctacatcgctcctgcttt 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5803 gggcctgcggaagtacgacttcgacaacaccatgggaggcttctacatcgctcctgcttt 5862 Query: 241 catggacaagcttgttgtccatctctccaaaaacttcatgaccctgcccaacatcaag 298 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5863 catggacaagcttgttgtccatctctccaaaaacttcatgaccctgcccaacatcaag 5920 Score = 410 bits (207), Expect = e-111 Identities = 387/445 (86%), Gaps = 4/445 (0%) Strand = Plus / Plus Query: 40 gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 99 |||||||||||| || ||||| ||||| |||||||||||||||||||| | ||||| || Sbjct: 2939 gtggaagggtctggcctacgacatctcggacgaccagcaggacatcactcgggggaaagg 2998 Query: 100 catcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtcctcag 159 |||||||||||| || |||||||| |||| |||||||||||||||||||||| |||| || Sbjct: 2999 catcgtggactccctgttccaggcccccatgggcgacggcacccacgaggccatcctaag 3058 Query: 160 ctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatgggagg 219 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || Sbjct: 3059 ctcctacgagtacatcagccagggcctgcggaagtacgacttcgacaacaccatggacgg 3118 Query: 220 cttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcat 279 | |||||||| || || |||||||||||||| | ||||| ||| |||| |||||||| Sbjct: 3119 gctgtacatcgcgccggcattcatggacaagctcatcgtccacctcgccaagaacttcat 3178 Query: 280 gaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaagg 339 ||| || |||||||||||| | || |||||| |||||||||||||||||||||| || || Sbjct: 3179 gacactccccaacatcaaggttcctctcatcctgggtatctggggaggcaagggacaggg 3238 Query: 340 aaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatgatgag 399 || || |||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 3239 caagtcgttccagtgtgagctggtgttcgccaagatgggcatcaaccccatcatgatgag 3298 Query: 400 tgccggagagctgggagagtgggaacgctggagagccagccaagctcatcaggcagcggt 459 ||||| ||||| |||||| || ||| || ||||| |||||||| ||| ||||| ||| Sbjct: 3299 cgccggtgagct-ggagagcggcaac---ggcgagccggccaagctgatccggcagaggt 3354 Query: 460 accgtgaggctgcagacatgatcaa 484 |||| ||||| || ||||| ||||| Sbjct: 3355 accgcgaggcggccgacattatcaa 3379 Score = 182 bits (92), Expect = 7e-43 Identities = 99/100 (99%), Gaps = 1/100 (1%) Strand = Plus / Plus Query: 385 ccccatcatgatgagtgccggagagctgggagagtgggaacgctggagagccagccaagc 444 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 6408 ccccatcatgatgagtgccggagagctgg-agagtgggaacgctggagagccagccaagc 6466 Query: 445 tcatcaggcagcggtaccgtgaggctgcagacatgatcaa 484 |||||||||||||||||||||||||||||||||||||||| Sbjct: 6467 tcatcaggcagcggtaccgtgaggctgcagacatgatcaa 6506 Score = 174 bits (88), Expect = 2e-40 Identities = 88/88 (100%) Strand = Plus / Plus Query: 297 agatcccactcatcttgggtatctggggaggcaagggtcaaggaaaatcattccagtgtg 356 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6070 agatcccactcatcttgggtatctggggaggcaagggtcaaggaaaatcattccagtgtg 6129 Query: 357 agcttgtgttcgccaagatgggcatcaa 384 |||||||||||||||||||||||||||| Sbjct: 6130 agcttgtgttcgccaagatgggcatcaa 6157
>dbj|AB110180.1| Oryza sativa (japonica cultivar-group) mRNA for ribulose-bisphosphate carboxylase activase large isoform precursor protein, complete cds, clone: 13YPR038 Length = 1558 Score = 535 bits (270), Expect = e-149 Identities = 406/450 (90%), Gaps = 1/450 (0%) Strand = Plus / Plus Query: 35 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 94 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 204 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 263 Query: 95 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 154 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 264 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 323 Query: 155 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 214 |||||||||||||||||| |||||||||| || | | |||||||||||||||||||||| Sbjct: 324 ctcagctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatg 383 Query: 215 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 274 ||||||||||||||||| |||||||||||||||||||| || ||||| ||||||| ||| Sbjct: 384 ggaggcttctacatcgcccctgctttcatggacaagctcgtcgtccacatctccaagaac 443 Query: 275 ttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggt 334 ||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||| Sbjct: 444 ttcatgaccctccccaacatcaaggtcccactcatcctgggtatctggggaggcaagggt 503 Query: 335 caaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatg 394 || |||||||| |||||||||||||| || |||||||||||||| ||||||||||||||| Sbjct: 504 cagggaaaatccttccagtgtgagctcgtcttcgccaagatggggatcaaccccatcatg 563 Query: 395 atgagtgccggagagctgggagagtgggaacgctggagagccagccaagctcatcaggca 454 ||||| ||||||||||| |||||| || ||||| |||||||| || ||||| |||||||| Sbjct: 564 atgagcgccggagagct-ggagagcggcaacgccggagagccggcgaagctgatcaggca 622 Query: 455 gcggtaccgtgaggctgcagacatgatcaa 484 ||||||||||||||| |||||||| ||||| Sbjct: 623 gcggtaccgtgaggcggcagacatcatcaa 652
>dbj|AK064986.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001C24, full insert sequence Length = 1680 Score = 535 bits (270), Expect = e-149 Identities = 406/450 (90%), Gaps = 1/450 (0%) Strand = Plus / Plus Query: 35 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 94 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 241 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 300 Query: 95 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 154 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 301 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 360 Query: 155 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 214 |||||||||||||||||| |||||||||| || | | |||||||||||||||||||||| Sbjct: 361 ctcagctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatg 420 Query: 215 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 274 ||||||||||||||||| |||||||||||||||||||| || ||||| ||||||| ||| Sbjct: 421 ggaggcttctacatcgcccctgctttcatggacaagctcgtcgtccacatctccaagaac 480 Query: 275 ttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggt 334 ||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||| Sbjct: 481 ttcatgaccctccccaacatcaaggtcccactcatcctgggtatctggggaggcaagggt 540 Query: 335 caaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatg 394 || |||||||| |||||||||||||| || |||||||||||||| ||||||||||||||| Sbjct: 541 cagggaaaatccttccagtgtgagctcgtcttcgccaagatggggatcaaccccatcatg 600 Query: 395 atgagtgccggagagctgggagagtgggaacgctggagagccagccaagctcatcaggca 454 ||||| ||||||||||| |||||| || ||||| |||||||| || ||||| |||||||| Sbjct: 601 atgagcgccggagagct-ggagagcggcaacgccggagagccggcgaagctgatcaggca 659 Query: 455 gcggtaccgtgaggctgcagacatgatcaa 484 ||||||||||||||| |||||||| ||||| Sbjct: 660 gcggtaccgtgaggcggcagacatcatcaa 689
>dbj|AK060847.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-E04, full insert sequence Length = 1691 Score = 535 bits (270), Expect = e-149 Identities = 406/450 (90%), Gaps = 1/450 (0%) Strand = Plus / Plus Query: 35 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 94 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 240 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 299 Query: 95 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 154 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 300 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 359 Query: 155 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 214 |||||||||||||||||| |||||||||| || | | |||||||||||||||||||||| Sbjct: 360 ctcagctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatg 419 Query: 215 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 274 ||||||||||||||||| |||||||||||||||||||| || ||||| ||||||| ||| Sbjct: 420 ggaggcttctacatcgcccctgctttcatggacaagctcgtcgtccacatctccaagaac 479 Query: 275 ttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggt 334 ||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||| Sbjct: 480 ttcatgaccctccccaacatcaaggtcccactcatcctgggtatctggggaggcaagggt 539 Query: 335 caaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatg 394 || |||||||| |||||||||||||| || |||||||||||||| ||||||||||||||| Sbjct: 540 cagggaaaatccttccagtgtgagctcgtcttcgccaagatggggatcaaccccatcatg 599 Query: 395 atgagtgccggagagctgggagagtgggaacgctggagagccagccaagctcatcaggca 454 ||||| ||||||||||| |||||| || ||||| |||||||| || ||||| |||||||| Sbjct: 600 atgagcgccggagagct-ggagagcggcaacgccggagagccggcgaagctgatcaggca 658 Query: 455 gcggtaccgtgaggctgcagacatgatcaa 484 ||||||||||||||| |||||||| ||||| Sbjct: 659 gcggtaccgtgaggcggcagacatcatcaa 688
>dbj|AK060841.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-D05, full insert sequence Length = 1470 Score = 535 bits (270), Expect = e-149 Identities = 406/450 (90%), Gaps = 1/450 (0%) Strand = Plus / Plus Query: 35 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 94 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 24 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 83 Query: 95 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 154 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 84 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 143 Query: 155 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 214 |||||||||||||||||| |||||||||| || | | |||||||||||||||||||||| Sbjct: 144 ctcagctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatg 203 Query: 215 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 274 ||||||||||||||||| |||||||||||||||||||| || ||||| ||||||| ||| Sbjct: 204 ggaggcttctacatcgcccctgctttcatggacaagctcgtcgtccacatctccaagaac 263 Query: 275 ttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggt 334 ||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||| Sbjct: 264 ttcatgaccctccccaacatcaaggtcccactcatcctgggtatctggggaggcaagggt 323 Query: 335 caaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatg 394 || |||||||| |||||||||||||| || |||||||||||||| ||||||||||||||| Sbjct: 324 cagggaaaatccttccagtgtgagctcgtcttcgccaagatggggatcaaccccatcatg 383 Query: 395 atgagtgccggagagctgggagagtgggaacgctggagagccagccaagctcatcaggca 454 ||||| ||||||||||| |||||| || ||||| |||||||| || ||||| |||||||| Sbjct: 384 atgagcgccggagagct-ggagagcggcaacgccggagagccggcgaagctgatcaggca 442 Query: 455 gcggtaccgtgaggctgcagacatgatcaa 484 ||||||||||||||| |||||||| ||||| Sbjct: 443 gcggtaccgtgaggcggcagacatcatcaa 472
>dbj|AB034748.1| Oryza sativa OsrcaA2 mRNA for RuBisCO activase small isoform precursor, complete cds Length = 1706 Score = 535 bits (270), Expect = e-149 Identities = 406/450 (90%), Gaps = 1/450 (0%) Strand = Plus / Plus Query: 35 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 94 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 245 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 304 Query: 95 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 154 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 305 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 364 Query: 155 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 214 |||||||||||||||||| |||||||||| || | | |||||||||||||||||||||| Sbjct: 365 ctcagctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatg 424 Query: 215 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 274 ||||||||||||||||| |||||||||||||||||||| || ||||| ||||||| ||| Sbjct: 425 ggaggcttctacatcgcccctgctttcatggacaagctcgtcgtccacatctccaagaac 484 Query: 275 ttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggt 334 ||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||| Sbjct: 485 ttcatgaccctccccaacatcaaggtcccactcatcctgggtatctggggaggcaagggt 544 Query: 335 caaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatg 394 || |||||||| |||||||||||||| || |||||||||||||| ||||||||||||||| Sbjct: 545 cagggaaaatccttccagtgtgagctcgtcttcgccaagatggggatcaaccccatcatg 604 Query: 395 atgagtgccggagagctgggagagtgggaacgctggagagccagccaagctcatcaggca 454 ||||| ||||||||||| |||||| || ||||| |||||||| || ||||| |||||||| Sbjct: 605 atgagcgccggagagct-ggagagcggcaacgccggagagccggcgaagctgatcaggca 663 Query: 455 gcggtaccgtgaggctgcagacatgatcaa 484 ||||||||||||||| |||||||| ||||| Sbjct: 664 gcggtaccgtgaggcggcagacatcatcaa 693
>dbj|AB034698.1| Oryza sativa OsrcaA1 mRNA for RuBisCO activase large isoform precursor, complete cds Length = 1623 Score = 535 bits (270), Expect = e-149 Identities = 406/450 (90%), Gaps = 1/450 (0%) Strand = Plus / Plus Query: 35 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 94 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 239 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 298 Query: 95 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 154 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 299 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 358 Query: 155 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 214 |||||||||||||||||| |||||||||| || | | |||||||||||||||||||||| Sbjct: 359 ctcagctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatg 418 Query: 215 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 274 ||||||||||||||||| |||||||||||||||||||| || ||||| ||||||| ||| Sbjct: 419 ggaggcttctacatcgcccctgctttcatggacaagctcgtcgtccacatctccaagaac 478 Query: 275 ttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggt 334 ||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||| Sbjct: 479 ttcatgaccctccccaacatcaaggtcccactcatcctgggtatctggggaggcaagggt 538 Query: 335 caaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatg 394 || |||||||| |||||||||||||| || |||||||||||||| ||||||||||||||| Sbjct: 539 cagggaaaatccttccagtgtgagctcgtcttcgccaagatggggatcaaccccatcatg 598 Query: 395 atgagtgccggagagctgggagagtgggaacgctggagagccagccaagctcatcaggca 454 ||||| ||||||||||| |||||| || ||||| |||||||| || ||||| |||||||| Sbjct: 599 atgagcgccggagagct-ggagagcggcaacgccggagagccggcgaagctgatcaggca 657 Query: 455 gcggtaccgtgaggctgcagacatgatcaa 484 ||||||||||||||| |||||||| ||||| Sbjct: 658 gcggtaccgtgaggcggcagacatcatcaa 687
>dbj|AK119513.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-F01, full insert sequence Length = 1721 Score = 527 bits (266), Expect = e-146 Identities = 405/450 (90%), Gaps = 1/450 (0%) Strand = Plus / Plus Query: 35 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 94 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 252 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 311 Query: 95 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 154 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 312 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 371 Query: 155 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 214 |||||||||||||||||| |||||||||| || | | |||||||||||||||||||||| Sbjct: 372 ctcagctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatg 431 Query: 215 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 274 ||||||||||||||||| |||||||||||||||||||| || ||||| ||||||| ||| Sbjct: 432 ggaggcttctacatcgcccctgctttcatggacaagctcgtcgtccacatctccaagaac 491 Query: 275 ttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggt 334 ||||||||||| |||||||||||| ||||||||| | ||||||||||||||||||||||| Sbjct: 492 ttcatgaccctccccaacatcaaggtcccactcaccctgggtatctggggaggcaagggt 551 Query: 335 caaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatg 394 || |||||||| |||||||||||||| || |||||||||||||| ||||||||||||||| Sbjct: 552 cagggaaaatccttccagtgtgagctcgtcttcgccaagatggggatcaaccccatcatg 611 Query: 395 atgagtgccggagagctgggagagtgggaacgctggagagccagccaagctcatcaggca 454 ||||| ||||||||||| |||||| || ||||| |||||||| || ||||| |||||||| Sbjct: 612 atgagcgccggagagct-ggagagcggcaacgccggagagccggcgaagctgatcaggca 670 Query: 455 gcggtaccgtgaggctgcagacatgatcaa 484 ||||||||||||||| |||||||| ||||| Sbjct: 671 gcggtaccgtgaggcggcagacatcatcaa 700
>gb|U74321.1|OSU74321 Oryza sativa ribulose-1,5-bisphosphate carboxylase/oxygenase activase (rca) mRNA, complete cds Length = 1675 Score = 515 bits (260), Expect = e-143 Identities = 404/450 (89%), Gaps = 4/450 (0%) Strand = Plus / Plus Query: 35 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 94 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 212 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 271 Query: 95 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 154 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 272 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 331 Query: 155 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 214 |||||||||||||||||| |||||||||| || | | |||||||||||||||||||||| Sbjct: 332 ctcagctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatg 391 Query: 215 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 274 ||||||||||||||||| ||| |||||||||||||||| || ||||| ||||||| ||| Sbjct: 392 ggaggcttctacatcgccccttctttcatggacaagctcgtcgtccacatctccaagaac 451 Query: 275 ttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggt 334 ||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||| Sbjct: 452 ttcatgaccctccccaacatcaaggtcccactcatcctgggtatctggggaggcaagggt 511 Query: 335 caaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatg 394 || |||||||| |||||||||||||| || |||||||||||||| ||||||||||||||| Sbjct: 512 cagggaaaatccttccagtgtgagctcgtcttcgccaagatggggatcaaccccatcatg 571 Query: 395 atgagtgccggagagctgggagagtgggaacgctggagagccagccaagctcatcaggca 454 ||||| ||||||||||| |||||| || ||| |||||||| |||||||| |||||||| Sbjct: 572 atgagcgccggagagct-ggagagcggcaac---ggagagccggccaagctgatcaggca 627 Query: 455 gcggtaccgtgaggctgcagacatgatcaa 484 ||||||||||||||| |||||||| ||||| Sbjct: 628 gcggtaccgtgaggcggcagacatcatcaa 657
>gb|AF251264.1|AF251264 Triticum aestivum ribulose bisphosphate carboxylase activase B (RcaB) mRNA, complete cds; nuclear gene for chloroplast product Length = 1525 Score = 446 bits (225), Expect = e-122 Identities = 391/445 (87%), Gaps = 1/445 (0%) Strand = Plus / Plus Query: 40 gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 99 |||||||||||| || ||||| |||||||| ||||||||||||||||| || ||||| || Sbjct: 217 gtggaagggtctcgcttacgacatctccgatgaccagcaggacatcacgagggggaaagg 276 Query: 100 catcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtcctcag 159 |||||||||||| || |||||||| |||| |||||||||||||||||||||| |||| || Sbjct: 277 catcgtggactccctgttccaggcccccatgggcgacggcacccacgaggccatcctgag 336 Query: 160 ctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatgggagg 219 ||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| || Sbjct: 337 ctcctacgagtacatcagccagggcctgcgcaagtacgacttcgacaacaccatggacgg 396 Query: 220 cttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcat 279 | |||||||| || || |||||||||||||| | ||||| ||| |||| |||||||| Sbjct: 397 gctgtacatcgccccggcgttcatggacaagctcatcgtccacctcgccaagaacttcat 456 Query: 280 gaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaagg 339 ||| || |||||||||||| |||| |||||| |||||||||||||||||||||| || || Sbjct: 457 gacactccccaacatcaaggtccctctcatcctgggtatctggggaggcaagggacaggg 516 Query: 340 aaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatgatgag 399 || || |||||||| ||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 517 caagtcgttccagtgcgagctggtgttcgccaagatgggcatcaaccccatcatgatgag 576 Query: 400 tgccggagagctgggagagtgggaacgctggagagccagccaagctcatcaggcagcggt 459 ||||||||||| |||||| || ||||| || ||||| |||||||| ||| ||||| ||| Sbjct: 577 cgccggagagct-ggagagcggcaacgccggcgagccggccaagctgatccggcagaggt 635 Query: 460 accgtgaggctgcagacatgatcaa 484 |||| |||||||| ||||| ||||| Sbjct: 636 accgcgaggctgccgacattatcaa 660
>gb|M55448.1|BLYRCAB Hordeum vulgare rubisco activase (RcaB) mRNA, complete cds Length = 1656 Score = 410 bits (207), Expect = e-111 Identities = 387/445 (86%), Gaps = 4/445 (0%) Strand = Plus / Plus Query: 40 gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 99 |||||||||||| || ||||| ||||| |||||||||||||||||||| | ||||| || Sbjct: 370 gtggaagggtctggcctacgacatctcggacgaccagcaggacatcactcgggggaaagg 429 Query: 100 catcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtcctcag 159 |||||||||||| || |||||||| |||| |||||||||||||||||||||| |||| || Sbjct: 430 catcgtggactccctgttccaggcccccatgggcgacggcacccacgaggccatcctaag 489 Query: 160 ctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatgggagg 219 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || Sbjct: 490 ctcctacgagtacatcagccagggcctgcggaagtacgacttcgacaacaccatggacgg 549 Query: 220 cttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcat 279 | |||||||| || || |||||||||||||| | ||||| ||| |||| |||||||| Sbjct: 550 gctgtacatcgcgccggcattcatggacaagctcatcgtccacctcgccaagaacttcat 609 Query: 280 gaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaagg 339 ||| || |||||||||||| | || |||||| |||||||||||||||||||||| || || Sbjct: 610 gacactccccaacatcaaggttcctctcatcctgggtatctggggaggcaagggacaggg 669 Query: 340 aaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatgatgag 399 || || |||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 670 caagtcgttccagtgtgagctggtgttcgccaagatgggcatcaaccccatcatgatgag 729 Query: 400 tgccggagagctgggagagtgggaacgctggagagccagccaagctcatcaggcagcggt 459 ||||| ||||| |||||| || ||| || ||||| |||||||| ||| ||||| ||| Sbjct: 730 cgccggtgagct-ggagagcggcaac---ggcgagccggccaagctgatccggcagaggt 785 Query: 460 accgtgaggctgcagacatgatcaa 484 |||| ||||| || ||||| ||||| Sbjct: 786 accgcgaggcggccgacattatcaa 810
>dbj|AK104332.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-F04, full insert sequence Length = 1682 Score = 400 bits (202), Expect = e-108 Identities = 296/326 (90%), Gaps = 1/326 (0%) Strand = Plus / Plus Query: 159 gctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatgggag 218 |||||||||||||| |||||||||| || | | |||||||||||||||||||||||||| Sbjct: 327 gctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatgggag 386 Query: 219 gcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttca 278 ||||||||||||| |||||||||||||||||||| || ||||| ||||||| ||||||| Sbjct: 387 gcttctacatcgcccctgctttcatggacaagctcgtcgtccacatctccaagaacttca 446 Query: 279 tgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaag 338 ||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||||| | Sbjct: 447 tgaccctccccaacatcaaggtcccactcatcctgggtatctggggaggcaagggtcagg 506 Query: 339 gaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatgatga 398 ||||||| |||||||||||||| || |||||||||||||| ||||||||||||||||||| Sbjct: 507 gaaaatccttccagtgtgagctcgtcttcgccaagatggggatcaaccccatcatgatga 566 Query: 399 gtgccggagagctgggagagtgggaacgctggagagccagccaagctcatcaggcagcgg 458 | ||||||||||| |||||| || ||||| |||||||| || ||||| |||||||||||| Sbjct: 567 gcgccggagagct-ggagagcggcaacgccggagagccggcgaagctgatcaggcagcgg 625 Query: 459 taccgtgaggctgcagacatgatcaa 484 ||||||||||| |||||||| ||||| Sbjct: 626 taccgtgaggcggcagacatcatcaa 651 Score = 89.7 bits (45), Expect = 8e-15 Identities = 78/89 (87%) Strand = Plus / Plus Query: 35 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 94 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 240 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 299 Query: 95 aagggcatcgtggactcgctcttccaggc 123 ||||| |||| ||||| || |||||||| Sbjct: 300 aagggtttcgtcgactcccttttccaggc 328
>gb|AF084478.3| Zea mays ribulose-1,5-bisphosphate carboxylase/oxygenase activase precursor (rca1) mRNA, complete cds Length = 1424 Score = 331 bits (167), Expect = 1e-87 Identities = 369/435 (84%), Gaps = 1/435 (0%) Strand = Plus / Plus Query: 35 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 94 |||| ||||||||| || || ||||| ||||| ||||||||||||||||||||||| || Sbjct: 213 gacaggtggaagggcctggcctacgacatctcggacgaccagcaggacatcaccaggggc 272 Query: 95 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 154 |||||| |||| ||| |||||||||||||| | ||| ||||||||||||| ||||| Sbjct: 273 aagggcctcgtcgacaacctcttccaggcgcctatgggggacggcacccacgtcgccgtg 332 Query: 155 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 214 |||||||||||||| ||| |||||||||||| | ||| |||||||||||| ||| Sbjct: 333 ctcagctcctacgactacatcagccagggccaaaagtcttacaacttcgacaacatgatg 392 Query: 215 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 274 | ||||||||||| || | |||||||||||||| || ||||| |||||||| ||| Sbjct: 393 gatggcttctacatagccaagggcttcatggacaagctcgtcgtccacctctccaagaac 452 Query: 275 ttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggt 334 |||||||||||||| ||||||||| | || |||||| ||||||||||||||||||| || Sbjct: 453 ttcatgaccctgccaaacatcaaggttcccctcatcctgggtatctggggaggcaaaggc 512 Query: 335 caaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatg 394 || |||||||| ||||| || ||||| || ||||||||||||||||||| |||||||||| Sbjct: 513 cagggaaaatcgttccaatgcgagctggtcttcgccaagatgggcatcacccccatcatg 572 Query: 395 atgagtgccggagagctgggagagtgggaacgctggagagccagccaagctcatcaggca 454 ||||| ||||| ||||| |||||| || ||||| |||||||| ||||||||||||||||| Sbjct: 573 atgagcgccggcgagct-ggagagcggcaacgccggagagcccgccaagctcatcaggca 631 Query: 455 gcggtaccgtgaggc 469 ||| ||||||||||| Sbjct: 632 gcgctaccgtgaggc 646
>gb|AF338240.1|AF338240 Zantedeschia aethiopica rubisco activase (rca4) mRNA, partial cds Length = 1674 Score = 319 bits (161), Expect = 5e-84 Identities = 351/413 (84%), Gaps = 1/413 (0%) Strand = Plus / Plus Query: 71 gaccagcaggacatcaccagagggaagggcatcgtggactcgctcttccaggcgcccacg 130 |||||||||||||||||||| ||||||||||| || ||||| || |||||||| |||| | Sbjct: 235 gaccagcaggacatcaccagggggaagggcatggtcgactccctgttccaggctcccatg 294 Query: 131 ggcgacggcacccacgaggccgtcctcagctcctacgagtacgtcagccagggcctgcgg 190 |||||||| |||||| | ||||||| ||||||||||||||| ||||| || || || Sbjct: 295 ggcgacggaacccacaaccccgtcctgagctcctacgagtacatcagcaccggtctccgc 354 Query: 191 aagtacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaag 250 || | |||| ||||||||| || || || ||||||||||| || |||||||||||| Sbjct: 355 tcgttcaacttggacaacaccgtgaatggtttatacatcgctccggccttcatggacaag 414 Query: 251 cttgttgtccatctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatc 310 ||||| || || || |||| |||||||||| | |||||||||||||||| || ||||| Sbjct: 415 cttgtcgttcacatcaccaagaacttcatgaacttgcccaacatcaagattcctctcatt 474 Query: 311 ttgggtatctggggaggcaagggtcaaggaaaatcattccagtgtgagcttgtgttcgcc 370 |||||||||||||||||||| |||||||| ||||| ||||| ||||| |||||||||||| Sbjct: 475 ttgggtatctggggaggcaaaggtcaagggaaatccttccaatgtgaacttgtgttcgcc 534 Query: 371 aagatgggcatcaaccccatcatgatgagtgccggagagctgggagagtgggaacgctgg 430 |||||||| |||||||||||||||||||| ||||| ||||| |||||| || ||||| || Sbjct: 535 aagatgggaatcaaccccatcatgatgagcgccggtgagct-ggagagcggcaacgccgg 593 Query: 431 agagccagccaagctcatcaggcagcggtaccgtgaggctgcagacatgatca 483 |||||| || ||||| ||| ||||||||||||||||||| || ||||| |||| Sbjct: 594 agagccggcgaagctgatccggcagcggtaccgtgaggccgccgacatcatca 646
>gb|AF338239.1|AF338239 Zantedeschia aethiopica rubisco activase (rca3) mRNA, partial cds Length = 1494 Score = 319 bits (161), Expect = 5e-84 Identities = 351/413 (84%), Gaps = 1/413 (0%) Strand = Plus / Plus Query: 71 gaccagcaggacatcaccagagggaagggcatcgtggactcgctcttccaggcgcccacg 130 |||||||||||||||||||| ||||||||||| || ||||| || |||||||| |||| | Sbjct: 98 gaccagcaggacatcaccagggggaagggcatggtcgactccctgttccaggctcccatg 157 Query: 131 ggcgacggcacccacgaggccgtcctcagctcctacgagtacgtcagccagggcctgcgg 190 |||||||| |||||| | ||||||| ||||||||||||||| ||||| || || || Sbjct: 158 ggcgacggaacccacaaccccgtcctgagctcctacgagtacatcagcaccggtctccgc 217 Query: 191 aagtacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaag 250 || | |||| ||||||||| || || || ||||||||||| || |||||||||||| Sbjct: 218 tcgttcaacttggacaacaccgtgaatggtttatacatcgctccggccttcatggacaag 277 Query: 251 cttgttgtccatctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatc 310 ||||| || || || |||| |||||||||| | |||||||||||||||| || ||||| Sbjct: 278 cttgtcgttcacatcaccaagaacttcatgaacttgcccaacatcaagattcctctcatt 337 Query: 311 ttgggtatctggggaggcaagggtcaaggaaaatcattccagtgtgagcttgtgttcgcc 370 |||||||||||||||||||| |||||||| ||||| ||||| ||||| |||||||||||| Sbjct: 338 ttgggtatctggggaggcaaaggtcaagggaaatccttccaatgtgaacttgtgttcgcc 397 Query: 371 aagatgggcatcaaccccatcatgatgagtgccggagagctgggagagtgggaacgctgg 430 |||||||| |||||||||||||||||||| ||||| ||||| |||||| || ||||| || Sbjct: 398 aagatgggaatcaaccccatcatgatgagcgccggtgagct-ggagagcggcaacgccgg 456 Query: 431 agagccagccaagctcatcaggcagcggtaccgtgaggctgcagacatgatca 483 |||||| || ||||| ||| ||||||||||||||||||| || ||||| |||| Sbjct: 457 agagccggcgaagctgatccggcagcggtaccgtgaggccgccgacatcatca 509
>gb|AF338237.1|AF338237 Zantedeschia aethiopica rubisco activase (rca1) mRNA, partial cds Length = 1597 Score = 311 bits (157), Expect = 1e-81 Identities = 350/413 (84%), Gaps = 1/413 (0%) Strand = Plus / Plus Query: 71 gaccagcaggacatcaccagagggaagggcatcgtggactcgctcttccaggcgcccacg 130 |||||||||||||||||||| ||||||||||| || ||||| || |||||||| |||| | Sbjct: 128 gaccagcaggacatcaccagggggaagggcatggtcgactccctgttccaggctcccatg 187 Query: 131 ggcgacggcacccacgaggccgtcctcagctcctacgagtacgtcagccagggcctgcgg 190 |||||||| |||||| | ||||||| ||||||||||||||| ||||| || || || Sbjct: 188 ggcgacggaacccacaaccccgtcctgagctcctacgagtacatcagcaccggtctccgc 247 Query: 191 aagtacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaag 250 || | |||| ||||||||| || || || ||||||||||| || |||||||||||| Sbjct: 248 tcgttcaacttggacaacaccgtgaatggtttatacatcgctccggccttcatggacaag 307 Query: 251 cttgttgtccatctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatc 310 ||||| || || || |||| |||||||||| | |||||||||||||||| || ||||| Sbjct: 308 cttgtcgttcacatcaccaagaacttcatgaacttgcccaacatcaagattcctctcatt 367 Query: 311 ttgggtatctggggaggcaagggtcaaggaaaatcattccagtgtgagcttgtgttcgcc 370 |||||||||||||||||||| ||||| || ||||| ||||| ||||| |||||||||||| Sbjct: 368 ttgggtatctggggaggcaaaggtcaggggaaatccttccaatgtgaacttgtgttcgcc 427 Query: 371 aagatgggcatcaaccccatcatgatgagtgccggagagctgggagagtgggaacgctgg 430 |||||||| |||||||||||||||||||| ||||| ||||| |||||| || ||||| || Sbjct: 428 aagatgggaatcaaccccatcatgatgagcgccggtgagct-ggagagcggcaacgccgg 486 Query: 431 agagccagccaagctcatcaggcagcggtaccgtgaggctgcagacatgatca 483 |||||| || ||||| ||| ||||||||||||||||||| || ||||| |||| Sbjct: 487 agagccggcgaagctgatccggcagcggtaccgtgaggccgccgacatcatca 539
>gb|AY110044.1| Zea mays CL1146_1 mRNA sequence Length = 1750 Score = 272 bits (137), Expect = 1e-69 Identities = 359/435 (82%), Gaps = 1/435 (0%) Strand = Plus / Plus Query: 35 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 94 |||| ||||||||| || || ||||| ||||| ||||||||||||||||||||||| || Sbjct: 213 gacaggtggaagggcctggcctacgacatctcggacgaccagcaggacatcaccaggggc 272 Query: 95 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 154 |||||| |||| ||| |||||||||||||| | |||||||||||| ||||| Sbjct: 273 aagggcctcgtcgacaacctcttccaggcgcctatnnnnnacggcacccacgtcgccgtg 332 Query: 155 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 214 |||||||||||||| ||| |||||||||||| | ||| |||||||||||| ||| Sbjct: 333 ctcagctcctacgactacatcagccagggccaaaagtcttacaacttcgacaacatgatg 392 Query: 215 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 274 | ||||||||||| || | |||||||||||||| || ||||| |||||||| ||| Sbjct: 393 gatggcttctacatagccaagggcttcatggacaagctcgtcgtccacctctccaagaac 452 Query: 275 ttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggt 334 |||||||||||||| ||||||||| | || |||||| |||||||| ||||||||| || Sbjct: 453 ttcatgaccctgccaaacatcaaggttcccctcatcctgggtatcgtgggaggcaaaggc 512 Query: 335 caaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatg 394 || |||||||| ||||| || ||||| || ||||||||||||||||||| |||||| Sbjct: 513 cagggaaaatcgttccaatgcgagctggtcttcgccaagatgggcatcannnnnatcatg 572 Query: 395 atgagtgccggagagctgggagagtgggaacgctggagagccagccaagctcatcaggca 454 ||||| ||||| ||||| |||||| || ||||| |||||||| ||||||||||||||||| Sbjct: 573 atgagcgccggcgagct-ggagagcggcaacgccggagagcccgccaagctcatcaggca 631 Query: 455 gcggtaccgtgaggc 469 ||| ||||||||||| Sbjct: 632 gcgctaccgtgaggc 646
>gb|AC137064.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0003C04 map S10003, complete sequence Length = 119238 Score = 270 bits (136), Expect = 4e-69 Identities = 178/192 (92%) Strand = Plus / Minus Query: 193 gtacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaagct 252 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 109435 gtacgacttcgacaacaccatgggaggcttctacatcgcccctgctttcatggacaagct 109376 Query: 253 tgttgtccatctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatctt 312 || ||||| ||||||| |||||||||||||| |||||||||||| ||||||||||| | Sbjct: 109375 cgtcgtccacatctccaagaacttcatgaccctccccaacatcaaggtcccactcatcct 109316 Query: 313 gggtatctggggaggcaagggtcaaggaaaatcattccagtgtgagcttgtgttcgccaa 372 |||||||||||||||||||||||| |||||||| |||||||||||||| || |||||||| Sbjct: 109315 gggtatctggggaggcaagggtcagggaaaatccttccagtgtgagctcgtcttcgccaa 109256 Query: 373 gatgggcatcaa 384 |||||| ||||| Sbjct: 109255 gatggggatcaa 109244 Score = 176 bits (89), Expect = 4e-41 Identities = 134/149 (89%) Strand = Plus / Minus Query: 35 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 94 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 109706 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 109647 Query: 95 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 154 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 109646 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 109587 Query: 155 ctcagctcctacgagtacgtcagccaggg 183 |||||||||||||||||| |||||||||| Sbjct: 109586 ctcagctcctacgagtacctcagccaggg 109558 Score = 125 bits (63), Expect = 1e-25 Identities = 99/111 (89%) Strand = Plus / Minus Query: 40 gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 99 ||||||||| || |||||||| ||||||||||||||||||||||||||||| |||||||| Sbjct: 113205 gtggaagggactcgcgtacgacatctccgacgaccagcaggacatcaccagggggaaggg 113146 Query: 100 catcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggc 150 | |||| ||||| || |||||||| |||| ||| || |||||||||||||| Sbjct: 113145 cctcgtcgactccctgttccaggctcccatgggtgatggcacccacgaggc 113095 Score = 111 bits (56), Expect = 2e-21 Identities = 90/100 (90%), Gaps = 1/100 (1%) Strand = Plus / Minus Query: 385 ccccatcatgatgagtgccggagagctgggagagtgggaacgctggagagccagccaagc 444 ||||||||||||||| ||||||||||||| |||| || ||||| |||||||| || |||| Sbjct: 109158 ccccatcatgatgagcgccggagagctgg-agagcggcaacgccggagagccggcgaagc 109100 Query: 445 tcatcaggcagcggtaccgtgaggctgcagacatgatcaa 484 | ||||||||||||||||||||||| |||||||| ||||| Sbjct: 109099 tgatcaggcagcggtaccgtgaggcggcagacatcatcaa 109060 Score = 56.0 bits (28), Expect = 1e-04 Identities = 49/56 (87%) Strand = Plus / Minus Query: 429 ggagagccagccaagctcatcaggcagcggtaccgtgaggctgcagacatgatcaa 484 |||||||| || ||||| ||| ||||||||||||| ||||| || ||||||||||| Sbjct: 112778 ggagagcccgcgaagctgatccggcagcggtaccgcgaggcggcggacatgatcaa 112723 Score = 44.1 bits (22), Expect = 0.42 Identities = 34/38 (89%) Strand = Plus / Minus Query: 347 ttccagtgtgagcttgtgttcgccaagatgggcatcaa 384 ||||||||||| || || |||||||||||||| ||||| Sbjct: 112906 ttccagtgtgatctcgtcttcgccaagatggggatcaa 112869
>gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0026K20 map S10559, complete sequence Length = 115996 Score = 270 bits (136), Expect = 4e-69 Identities = 178/192 (92%) Strand = Plus / Minus Query: 193 gtacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaagct 252 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 31312 gtacgacttcgacaacaccatgggaggcttctacatcgcccctgctttcatggacaagct 31253 Query: 253 tgttgtccatctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatctt 312 || ||||| ||||||| |||||||||||||| |||||||||||| ||||||||||| | Sbjct: 31252 cgtcgtccacatctccaagaacttcatgaccctccccaacatcaaggtcccactcatcct 31193 Query: 313 gggtatctggggaggcaagggtcaaggaaaatcattccagtgtgagcttgtgttcgccaa 372 |||||||||||||||||||||||| |||||||| |||||||||||||| || |||||||| Sbjct: 31192 gggtatctggggaggcaagggtcagggaaaatccttccagtgtgagctcgtcttcgccaa 31133 Query: 373 gatgggcatcaa 384 |||||| ||||| Sbjct: 31132 gatggggatcaa 31121 Score = 176 bits (89), Expect = 4e-41 Identities = 134/149 (89%) Strand = Plus / Minus Query: 35 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 94 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 31583 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 31524 Query: 95 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 154 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 31523 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 31464 Query: 155 ctcagctcctacgagtacgtcagccaggg 183 |||||||||||||||||| |||||||||| Sbjct: 31463 ctcagctcctacgagtacctcagccaggg 31435 Score = 125 bits (63), Expect = 1e-25 Identities = 99/111 (89%) Strand = Plus / Minus Query: 40 gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 99 ||||||||| || |||||||| ||||||||||||||||||||||||||||| |||||||| Sbjct: 35082 gtggaagggactcgcgtacgacatctccgacgaccagcaggacatcaccagggggaaggg 35023 Query: 100 catcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggc 150 | |||| ||||| || |||||||| |||| ||| || |||||||||||||| Sbjct: 35022 cctcgtcgactccctgttccaggctcccatgggtgatggcacccacgaggc 34972 Score = 111 bits (56), Expect = 2e-21 Identities = 90/100 (90%), Gaps = 1/100 (1%) Strand = Plus / Minus Query: 385 ccccatcatgatgagtgccggagagctgggagagtgggaacgctggagagccagccaagc 444 ||||||||||||||| ||||||||||||| |||| || ||||| |||||||| || |||| Sbjct: 31035 ccccatcatgatgagcgccggagagctgg-agagcggcaacgccggagagccggcgaagc 30977 Query: 445 tcatcaggcagcggtaccgtgaggctgcagacatgatcaa 484 | ||||||||||||||||||||||| |||||||| ||||| Sbjct: 30976 tgatcaggcagcggtaccgtgaggcggcagacatcatcaa 30937 Score = 56.0 bits (28), Expect = 1e-04 Identities = 49/56 (87%) Strand = Plus / Minus Query: 429 ggagagccagccaagctcatcaggcagcggtaccgtgaggctgcagacatgatcaa 484 |||||||| || ||||| ||| ||||||||||||| ||||| || ||||||||||| Sbjct: 34655 ggagagcccgcgaagctgatccggcagcggtaccgcgaggcggcggacatgatcaa 34600 Score = 44.1 bits (22), Expect = 0.42 Identities = 34/38 (89%) Strand = Plus / Minus Query: 347 ttccagtgtgagcttgtgttcgccaagatgggcatcaa 384 ||||||||||| || || |||||||||||||| ||||| Sbjct: 34783 ttccagtgtgatctcgtcttcgccaagatggggatcaa 34746
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 270 bits (136), Expect = 4e-69 Identities = 178/192 (92%) Strand = Plus / Minus Query: 193 gtacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaagct 252 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 28304574 gtacgacttcgacaacaccatgggaggcttctacatcgcccctgctttcatggacaagct 28304515 Query: 253 tgttgtccatctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatctt 312 || ||||| ||||||| |||||||||||||| |||||||||||| ||||||||||| | Sbjct: 28304514 cgtcgtccacatctccaagaacttcatgaccctccccaacatcaaggtcccactcatcct 28304455 Query: 313 gggtatctggggaggcaagggtcaaggaaaatcattccagtgtgagcttgtgttcgccaa 372 |||||||||||||||||||||||| |||||||| |||||||||||||| || |||||||| Sbjct: 28304454 gggtatctggggaggcaagggtcagggaaaatccttccagtgtgagctcgtcttcgccaa 28304395 Query: 373 gatgggcatcaa 384 |||||| ||||| Sbjct: 28304394 gatggggatcaa 28304383 Score = 176 bits (89), Expect = 4e-41 Identities = 134/149 (89%) Strand = Plus / Minus Query: 35 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 94 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 28304845 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 28304786 Query: 95 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 154 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 28304785 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 28304726 Query: 155 ctcagctcctacgagtacgtcagccaggg 183 |||||||||||||||||| |||||||||| Sbjct: 28304725 ctcagctcctacgagtacctcagccaggg 28304697 Score = 125 bits (63), Expect = 1e-25 Identities = 99/111 (89%) Strand = Plus / Minus Query: 40 gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 99 ||||||||| || |||||||| ||||||||||||||||||||||||||||| |||||||| Sbjct: 28308344 gtggaagggactcgcgtacgacatctccgacgaccagcaggacatcaccagggggaaggg 28308285 Query: 100 catcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggc 150 | |||| ||||| || |||||||| |||| ||| || |||||||||||||| Sbjct: 28308284 cctcgtcgactccctgttccaggctcccatgggtgatggcacccacgaggc 28308234 Score = 111 bits (56), Expect = 2e-21 Identities = 90/100 (90%), Gaps = 1/100 (1%) Strand = Plus / Minus Query: 385 ccccatcatgatgagtgccggagagctgggagagtgggaacgctggagagccagccaagc 444 ||||||||||||||| ||||||||||||| |||| || ||||| |||||||| || |||| Sbjct: 28304297 ccccatcatgatgagcgccggagagctgg-agagcggcaacgccggagagccggcgaagc 28304239 Query: 445 tcatcaggcagcggtaccgtgaggctgcagacatgatcaa 484 | ||||||||||||||||||||||| |||||||| ||||| Sbjct: 28304238 tgatcaggcagcggtaccgtgaggcggcagacatcatcaa 28304199 Score = 56.0 bits (28), Expect = 1e-04 Identities = 49/56 (87%) Strand = Plus / Minus Query: 429 ggagagccagccaagctcatcaggcagcggtaccgtgaggctgcagacatgatcaa 484 |||||||| || ||||| ||| ||||||||||||| ||||| || ||||||||||| Sbjct: 28307917 ggagagcccgcgaagctgatccggcagcggtaccgcgaggcggcggacatgatcaa 28307862 Score = 44.1 bits (22), Expect = 0.42 Identities = 34/38 (89%) Strand = Plus / Minus Query: 347 ttccagtgtgagcttgtgttcgccaagatgggcatcaa 384 ||||||||||| || || |||||||||||||| ||||| Sbjct: 28308045 ttccagtgtgatctcgtcttcgccaagatggggatcaa 28308008
>gb|AF329934.1|AF329934 Gossypium hirsutum ribulose-1,5-bisphosphate carboxylase/oxygenase activase 1 mRNA, complete cds Length = 1559 Score = 270 bits (136), Expect = 4e-69 Identities = 368/444 (82%), Gaps = 1/444 (0%) Strand = Plus / Plus Query: 41 tggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaagggc 100 |||||||||||||| || ||||||||||| ||||| || ||||| ||||||||||| || Sbjct: 280 tggaagggtcttgcttatgatatctccgatgaccaacaagacattaccagagggaaaggt 339 Query: 101 atcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtcctcagc 160 || || ||||| | ||||| || |||| | ||| || || ||| | || ||| | ||| Sbjct: 340 atggtcgactcattgttccaagctcccatgaacgatggtactcactatgctgtcatgagc 399 Query: 161 tcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatgggaggc 220 ||||| |||||| | ||||| ||||| || | |||||||| ||||||| ||||| || Sbjct: 400 tcctatgagtacattagccaaggccttcgcacatacgacttggacaacaacatggatgga 459 Query: 221 ttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatg 280 |||||||| || || ||||||||||||||||||||||| || || |||| |||| |||| Sbjct: 460 ttctacattgccccagctttcatggacaagcttgttgttcacatcaccaagaactacatg 519 Query: 281 accctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaagga 340 ||||| || ||||| ||| | || || ||||||||||| ||||||||||| ||||||||| Sbjct: 520 acccttcctaacattaaggttcctcttatcttgggtatttggggaggcaaaggtcaagga 579 Query: 341 aaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatgatgagt 400 ||||| ||||| ||||||||||| || ||||||||||| ||||||||||| ||||||||| Sbjct: 580 aaatctttccaatgtgagcttgtctttgccaagatgggaatcaaccccattatgatgagt 639 Query: 401 gccggagagctgggagagtgggaacgctggagagccagccaagctcatcaggcagcggta 460 |||||||| | ||| ||||||||||| ||||| ||||||||| | |||||||| |||| Sbjct: 640 gccggaga-attggaaagtgggaacgccggagaaccagccaagttgatcaggcaaaggta 698 Query: 461 ccgtgaggctgcagacatgatcaa 484 ||||||||| || ||||| ||||| Sbjct: 699 ccgtgaggccgccgacattatcaa 722
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 270 bits (136), Expect = 4e-69 Identities = 178/192 (92%) Strand = Plus / Minus Query: 193 gtacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaagct 252 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 28287023 gtacgacttcgacaacaccatgggaggcttctacatcgcccctgctttcatggacaagct 28286964 Query: 253 tgttgtccatctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatctt 312 || ||||| ||||||| |||||||||||||| |||||||||||| ||||||||||| | Sbjct: 28286963 cgtcgtccacatctccaagaacttcatgaccctccccaacatcaaggtcccactcatcct 28286904 Query: 313 gggtatctggggaggcaagggtcaaggaaaatcattccagtgtgagcttgtgttcgccaa 372 |||||||||||||||||||||||| |||||||| |||||||||||||| || |||||||| Sbjct: 28286903 gggtatctggggaggcaagggtcagggaaaatccttccagtgtgagctcgtcttcgccaa 28286844 Query: 373 gatgggcatcaa 384 |||||| ||||| Sbjct: 28286843 gatggggatcaa 28286832 Score = 176 bits (89), Expect = 4e-41 Identities = 134/149 (89%) Strand = Plus / Minus Query: 35 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 94 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 28287294 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 28287235 Query: 95 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 154 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 28287234 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 28287175 Query: 155 ctcagctcctacgagtacgtcagccaggg 183 |||||||||||||||||| |||||||||| Sbjct: 28287174 ctcagctcctacgagtacctcagccaggg 28287146 Score = 125 bits (63), Expect = 1e-25 Identities = 99/111 (89%) Strand = Plus / Minus Query: 40 gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 99 ||||||||| || |||||||| ||||||||||||||||||||||||||||| |||||||| Sbjct: 28290793 gtggaagggactcgcgtacgacatctccgacgaccagcaggacatcaccagggggaaggg 28290734 Query: 100 catcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggc 150 | |||| ||||| || |||||||| |||| ||| || |||||||||||||| Sbjct: 28290733 cctcgtcgactccctgttccaggctcccatgggtgatggcacccacgaggc 28290683 Score = 111 bits (56), Expect = 2e-21 Identities = 90/100 (90%), Gaps = 1/100 (1%) Strand = Plus / Minus Query: 385 ccccatcatgatgagtgccggagagctgggagagtgggaacgctggagagccagccaagc 444 ||||||||||||||| ||||||||||||| |||| || ||||| |||||||| || |||| Sbjct: 28286746 ccccatcatgatgagcgccggagagctgg-agagcggcaacgccggagagccggcgaagc 28286688 Query: 445 tcatcaggcagcggtaccgtgaggctgcagacatgatcaa 484 | ||||||||||||||||||||||| |||||||| ||||| Sbjct: 28286687 tgatcaggcagcggtaccgtgaggcggcagacatcatcaa 28286648 Score = 56.0 bits (28), Expect = 1e-04 Identities = 49/56 (87%) Strand = Plus / Minus Query: 429 ggagagccagccaagctcatcaggcagcggtaccgtgaggctgcagacatgatcaa 484 |||||||| || ||||| ||| ||||||||||||| ||||| || ||||||||||| Sbjct: 28290366 ggagagcccgcgaagctgatccggcagcggtaccgcgaggcggcggacatgatcaa 28290311 Score = 44.1 bits (22), Expect = 0.42 Identities = 34/38 (89%) Strand = Plus / Minus Query: 347 ttccagtgtgagcttgtgttcgccaagatgggcatcaa 384 ||||||||||| || || |||||||||||||| ||||| Sbjct: 28290494 ttccagtgtgatctcgtcttcgccaagatggggatcaa 28290457
>gb|AF338238.1|AF338238 Zantedeschia aethiopica rubisco activase (rca2) mRNA, partial cds Length = 1436 Score = 246 bits (124), Expect = 6e-62 Identities = 227/260 (87%), Gaps = 1/260 (0%) Strand = Plus / Plus Query: 224 tacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatgacc 283 ||||||||||| || ||||||||||||||||| || || || |||| |||||||||| | Sbjct: 87 tacatcgctccggccttcatggacaagcttgtcgttcacatcaccaagaacttcatgaac 146 Query: 284 ctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaaggaaaa 343 |||||||||||||||| || ||||| |||||||||||||||||||| ||||| || ||| Sbjct: 147 ttgcccaacatcaagattcctctcattttgggtatctggggaggcaaaggtcaggggaaa 206 Query: 344 tcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatgatgagtgcc 403 || ||||| ||||| |||||||||||||||||||| |||||||||||||||||||| ||| Sbjct: 207 tccttccaatgtgaacttgtgttcgccaagatgggaatcaaccccatcatgatgagcgcc 266 Query: 404 ggagagctgggagagtgggaacgctggagagccagccaagctcatcaggcagcggtaccg 463 || ||||| |||||| || ||||| |||||||| || ||||| ||| ||||||||||||| Sbjct: 267 ggtgagct-ggagagcggcaacgccggagagccggcgaagctgatccggcagcggtaccg 325 Query: 464 tgaggctgcagacatgatca 483 |||||| || ||||| |||| Sbjct: 326 tgaggccgccgacatcatca 345
>gb|AF305876.2| Zea mays ribulose 1,5-bisphosphate carboxylase/oxygenase activase precursor, mRNA, partial cds Length = 1336 Score = 244 bits (123), Expect = 2e-61 Identities = 205/231 (88%), Gaps = 1/231 (0%) Strand = Plus / Plus Query: 239 ttcatggacaagcttgttgtccatctctccaaaaacttcatgaccctgcccaacatcaag 298 |||||||||||||| || ||||| |||||||| ||||||||||||||||| ||||||||| Sbjct: 22 ttcatggacaagctcgtcgtccacctctccaagaacttcatgaccctgccaaacatcaag 81 Query: 299 atcccactcatcttgggtatctggggaggcaagggtcaaggaaaatcattccagtgtgag 358 | || |||||| ||||||||||||||||||| || || |||||||| ||||| || ||| Sbjct: 82 gttcccctcatcctgggtatctggggaggcaaaggccagggaaaatcgttccaatgcgag 141 Query: 359 cttgtgttcgccaagatgggcatcaaccccatcatgatgagtgccggagagctgggagag 418 || || ||||||||||||||||||| ||||||||||||||| ||||| ||||| |||||| Sbjct: 142 ctggtcttcgccaagatgggcatcacccccatcatgatgagcgccggcgagct-ggagag 200 Query: 419 tgggaacgctggagagccagccaagctcatcaggcagcggtaccgtgaggc 469 || ||||| |||||||| |||||||||||||||||||| ||||||||||| Sbjct: 201 cggcaacgccggagagcccgccaagctcatcaggcagcgctaccgtgaggc 251
>gb|DQ233255.1| Gossypium hirsutum ribulose-1,5-bisphosphate carboxylase/oxygenase activase alpha 2 mRNA, complete cds Length = 1433 Score = 242 bits (122), Expect = 9e-61 Identities = 243/282 (86%), Gaps = 1/282 (0%) Strand = Plus / Plus Query: 203 gacaacaccatgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccat 262 ||||||| ||||| || |||||||| |||||||| |||||||||||||||||||| || Sbjct: 256 gacaacaacatggatggtttctacattgctcctgcattcatggacaagcttgttgttcac 315 Query: 263 ctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctgg 322 || |||| ||||||||| |||| || ||||| ||| | || || ||||||||||| ||| Sbjct: 316 atcaccaagaacttcatgtccctccctaacattaaggttcctctaatcttgggtatttgg 375 Query: 323 ggaggcaagggtcaaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatc 382 |||||||| |||||||||||||| ||||| |||||||||||||| ||||||||||| ||| Sbjct: 376 ggaggcaaaggtcaaggaaaatctttccaatgtgagcttgtgtttgccaagatgggtatc 435 Query: 383 aaccccatcatgatgagtgccggagagctgggagagtgggaacgctggagagccagccaa 442 |||||||||||||||||||||||||| || ||| ||||| ||||| || || |||||||| Sbjct: 436 aaccccatcatgatgagtgccggagaact-ggaaagtggaaacgccggtgaaccagccaa 494 Query: 443 gctcatcaggcagcggtaccgtgaggctgcagacatgatcaa 484 | | |||||||| |||||||||| ||||| ||||| ||||| Sbjct: 495 gttgatcaggcaaaggtaccgtgaagctgccgacataatcaa 536
>ref|NM_179989.1| Arabidopsis thaliana RCA (RUBISCO ACTIVASE) AT2G39730 (RCA) transcript variant AT2G39730.2 mRNA, complete cds Length = 1815 Score = 232 bits (117), Expect = 9e-58 Identities = 280/333 (84%), Gaps = 1/333 (0%) Strand = Plus / Plus Query: 152 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 211 ||||| ||||| ||||| ||||| ||||| ||||| || ||||| |||| ||||||| Sbjct: 496 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 555 Query: 212 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 271 |||| || || ||||| ||||||||||||||||||||||||||||| || || |||| Sbjct: 556 atggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaag 615 Query: 272 aacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaag 331 |||||| |||| ||||| ||||||||| | ||||| || |||||||| ||||||||||| Sbjct: 616 aacttcttgactctgcctaacatcaaggttccacttattttgggtatatggggaggcaaa 675 Query: 332 ggtcaaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatc 391 |||||||| ||||| ||||||||||||||||| | ||||||||||| |||||||| ||| Sbjct: 676 ggtcaaggtaaatccttccagtgtgagcttgtcatggccaagatgggtatcaacccaatc 735 Query: 392 atgatgagtgccggagagctgggagagtgggaacgctggagagccagccaagctcatcag 451 ||||||||||| |||||||| |||||||| ||||| ||||| || || ||||| ||| | Sbjct: 736 atgatgagtgctggagagct-tgagagtggaaacgcaggagaacccgcaaagcttatccg 794 Query: 452 gcagcggtaccgtgaggctgcagacatgatcaa 484 ||| ||||||||||||| || ||| ||||||| Sbjct: 795 tcagaggtaccgtgaggcagctgacttgatcaa 827
>ref|NM_179990.1| Arabidopsis thaliana RCA (RUBISCO ACTIVASE) AT2G39730 (RCA) transcript variant AT2G39730.3 mRNA, complete cds Length = 1928 Score = 232 bits (117), Expect = 9e-58 Identities = 280/333 (84%), Gaps = 1/333 (0%) Strand = Plus / Plus Query: 152 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 211 ||||| ||||| ||||| ||||| ||||| ||||| || ||||| |||| ||||||| Sbjct: 496 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 555 Query: 212 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 271 |||| || || ||||| ||||||||||||||||||||||||||||| || || |||| Sbjct: 556 atggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaag 615 Query: 272 aacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaag 331 |||||| |||| ||||| ||||||||| | ||||| || |||||||| ||||||||||| Sbjct: 616 aacttcttgactctgcctaacatcaaggttccacttattttgggtatatggggaggcaaa 675 Query: 332 ggtcaaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatc 391 |||||||| ||||| ||||||||||||||||| | ||||||||||| |||||||| ||| Sbjct: 676 ggtcaaggtaaatccttccagtgtgagcttgtcatggccaagatgggtatcaacccaatc 735 Query: 392 atgatgagtgccggagagctgggagagtgggaacgctggagagccagccaagctcatcag 451 ||||||||||| |||||||| |||||||| ||||| ||||| || || ||||| ||| | Sbjct: 736 atgatgagtgctggagagct-tgagagtggaaacgcaggagaacccgcaaagcttatccg 794 Query: 452 gcagcggtaccgtgaggctgcagacatgatcaa 484 ||| ||||||||||||| || ||| ||||||| Sbjct: 795 tcagaggtaccgtgaggcagctgacttgatcaa 827
>ref|NM_129531.2| Arabidopsis thaliana RCA (RUBISCO ACTIVASE) AT2G39730 (RCA) transcript variant AT2G39730.1 mRNA, complete cds Length = 1833 Score = 232 bits (117), Expect = 9e-58 Identities = 280/333 (84%), Gaps = 1/333 (0%) Strand = Plus / Plus Query: 152 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 211 ||||| ||||| ||||| ||||| ||||| ||||| || ||||| |||| ||||||| Sbjct: 525 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 584 Query: 212 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 271 |||| || || ||||| ||||||||||||||||||||||||||||| || || |||| Sbjct: 585 atggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaag 644 Query: 272 aacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaag 331 |||||| |||| ||||| ||||||||| | ||||| || |||||||| ||||||||||| Sbjct: 645 aacttcttgactctgcctaacatcaaggttccacttattttgggtatatggggaggcaaa 704 Query: 332 ggtcaaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatc 391 |||||||| ||||| ||||||||||||||||| | ||||||||||| |||||||| ||| Sbjct: 705 ggtcaaggtaaatccttccagtgtgagcttgtcatggccaagatgggtatcaacccaatc 764 Query: 392 atgatgagtgccggagagctgggagagtgggaacgctggagagccagccaagctcatcag 451 ||||||||||| |||||||| |||||||| ||||| ||||| || || ||||| ||| | Sbjct: 765 atgatgagtgctggagagct-tgagagtggaaacgcaggagaacccgcaaagcttatccg 823 Query: 452 gcagcggtaccgtgaggctgcagacatgatcaa 484 ||| ||||||||||||| || ||| ||||||| Sbjct: 824 tcagaggtaccgtgaggcagctgacttgatcaa 856
>gb|BT000710.1| Arabidopsis thaliana clone RAFL09-90-K08 (R19890) unknown protein (At2g39730) mRNA, complete cds Length = 1697 Score = 232 bits (117), Expect = 9e-58 Identities = 280/333 (84%), Gaps = 1/333 (0%) Strand = Plus / Plus Query: 152 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 211 ||||| ||||| ||||| ||||| ||||| ||||| || ||||| |||| ||||||| Sbjct: 407 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 466 Query: 212 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 271 |||| || || ||||| ||||||||||||||||||||||||||||| || || |||| Sbjct: 467 atggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaag 526 Query: 272 aacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaag 331 |||||| |||| ||||| ||||||||| | ||||| || |||||||| ||||||||||| Sbjct: 527 aacttcttgactctgcctaacatcaaggttccacttattttgggtatatggggaggcaaa 586 Query: 332 ggtcaaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatc 391 |||||||| ||||| ||||||||||||||||| | ||||||||||| |||||||| ||| Sbjct: 587 ggtcaaggtaaatccttccagtgtgagcttgtcatggccaagatgggtatcaacccaatc 646 Query: 392 atgatgagtgccggagagctgggagagtgggaacgctggagagccagccaagctcatcag 451 ||||||||||| |||||||| |||||||| ||||| ||||| || || ||||| ||| | Sbjct: 647 atgatgagtgctggagagct-tgagagtggaaacgcaggagaacccgcaaagcttatccg 705 Query: 452 gcagcggtaccgtgaggctgcagacatgatcaa 484 ||| ||||||||||||| || ||| ||||||| Sbjct: 706 tcagaggtaccgtgaggcagctgacttgatcaa 738
>gb|BT000613.1| Arabidopsis thaliana Rubsico activase (At2g39730/T5I7.3) mRNA, complete cds Length = 1425 Score = 232 bits (117), Expect = 9e-58 Identities = 280/333 (84%), Gaps = 1/333 (0%) Strand = Plus / Plus Query: 152 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 211 ||||| ||||| ||||| ||||| ||||| ||||| || ||||| |||| ||||||| Sbjct: 322 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 381 Query: 212 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 271 |||| || || ||||| ||||||||||||||||||||||||||||| || || |||| Sbjct: 382 atggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaag 441 Query: 272 aacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaag 331 |||||| |||| ||||| ||||||||| | ||||| || |||||||| ||||||||||| Sbjct: 442 aacttcttgactctgcctaacatcaaggttccacttattttgggtatatggggaggcaaa 501 Query: 332 ggtcaaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatc 391 |||||||| ||||| ||||||||||||||||| | ||||||||||| |||||||| ||| Sbjct: 502 ggtcaaggtaaatccttccagtgtgagcttgtcatggccaagatgggtatcaacccaatc 561 Query: 392 atgatgagtgccggagagctgggagagtgggaacgctggagagccagccaagctcatcag 451 ||||||||||| |||||||| |||||||| ||||| ||||| || || ||||| ||| | Sbjct: 562 atgatgagtgctggagagct-tgagagtggaaacgcaggagaacccgcaaagcttatccg 620 Query: 452 gcagcggtaccgtgaggctgcagacatgatcaa 484 ||| ||||||||||||| || ||| ||||||| Sbjct: 621 tcagaggtaccgtgaggcagctgacttgatcaa 653
>gb|AY056108.1| Arabidopsis thaliana At2g39730/T5I7.3_ mRNA, complete cds Length = 1674 Score = 232 bits (117), Expect = 9e-58 Identities = 280/333 (84%), Gaps = 1/333 (0%) Strand = Plus / Plus Query: 152 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 211 ||||| ||||| ||||| ||||| ||||| ||||| || ||||| |||| ||||||| Sbjct: 410 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 469 Query: 212 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 271 |||| || || ||||| ||||||||||||||||||||||||||||| || || |||| Sbjct: 470 atggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaag 529 Query: 272 aacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaag 331 |||||| |||| ||||| ||||||||| | ||||| || |||||||| ||||||||||| Sbjct: 530 aacttcttgactctgcctaacatcaaggttccacttattttgggtatatggggaggcaaa 589 Query: 332 ggtcaaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatc 391 |||||||| ||||| ||||||||||||||||| | ||||||||||| |||||||| ||| Sbjct: 590 ggtcaaggtaaatccttccagtgtgagcttgtcatggccaagatgggtatcaacccaatc 649 Query: 392 atgatgagtgccggagagctgggagagtgggaacgctggagagccagccaagctcatcag 451 ||||||||||| |||||||| |||||||| ||||| ||||| || || ||||| ||| | Sbjct: 650 atgatgagtgctggagagct-tgagagtggaaacgcaggagaacccgcaaagcttatccg 708 Query: 452 gcagcggtaccgtgaggctgcagacatgatcaa 484 ||| ||||||||||||| || ||| ||||||| Sbjct: 709 tcagaggtaccgtgaggcagctgacttgatcaa 741
>gb|AY052703.1| Arabidopsis thaliana At2g39730/T5I7.3 mRNA, complete cds Length = 1693 Score = 232 bits (117), Expect = 9e-58 Identities = 280/333 (84%), Gaps = 1/333 (0%) Strand = Plus / Plus Query: 152 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 211 ||||| ||||| ||||| ||||| ||||| ||||| || ||||| |||| ||||||| Sbjct: 399 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 458 Query: 212 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 271 |||| || || ||||| ||||||||||||||||||||||||||||| || || |||| Sbjct: 459 atggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaag 518 Query: 272 aacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaag 331 |||||| |||| ||||| ||||||||| | ||||| || |||||||| ||||||||||| Sbjct: 519 aacttcttgactctgcctaacatcaaggttccacttattttgggtatatggggaggcaaa 578 Query: 332 ggtcaaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatc 391 |||||||| ||||| ||||||||||||||||| | ||||||||||| |||||||| ||| Sbjct: 579 ggtcaaggtaaatccttccagtgtgagcttgtcatggccaagatgggtatcaacccaatc 638 Query: 392 atgatgagtgccggagagctgggagagtgggaacgctggagagccagccaagctcatcag 451 ||||||||||| |||||||| |||||||| ||||| ||||| || || ||||| ||| | Sbjct: 639 atgatgagtgctggagagct-tgagagtggaaacgcaggagaacccgcaaagcttatccg 697 Query: 452 gcagcggtaccgtgaggctgcagacatgatcaa 484 ||| ||||||||||||| || ||| ||||||| Sbjct: 698 tcagaggtaccgtgaggcagctgacttgatcaa 730
>gb|AY052290.1| Arabidopsis thaliana At2g39730/T5I7.3 mRNA, complete cds Length = 1655 Score = 232 bits (117), Expect = 9e-58 Identities = 280/333 (84%), Gaps = 1/333 (0%) Strand = Plus / Plus Query: 152 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 211 ||||| ||||| ||||| ||||| ||||| ||||| || ||||| |||| ||||||| Sbjct: 407 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 466 Query: 212 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 271 |||| || || ||||| ||||||||||||||||||||||||||||| || || |||| Sbjct: 467 atggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaag 526 Query: 272 aacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaag 331 |||||| |||| ||||| ||||||||| | ||||| || |||||||| ||||||||||| Sbjct: 527 aacttcttgactctgcctaacatcaaggttccacttattttgggtatatggggaggcaaa 586 Query: 332 ggtcaaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatc 391 |||||||| ||||| ||||||||||||||||| | ||||||||||| |||||||| ||| Sbjct: 587 ggtcaaggtaaatccttccagtgtgagcttgtcatggccaagatgggtatcaacccaatc 646 Query: 392 atgatgagtgccggagagctgggagagtgggaacgctggagagccagccaagctcatcag 451 ||||||||||| |||||||| |||||||| ||||| ||||| || || ||||| ||| | Sbjct: 647 atgatgagtgctggagagct-tgagagtggaaacgcaggagaacccgcaaagcttatccg 705 Query: 452 gcagcggtaccgtgaggctgcagacatgatcaa 484 ||| ||||||||||||| || ||| ||||||| Sbjct: 706 tcagaggtaccgtgaggcagctgacttgatcaa 738
>gb|AF325049.2|AF325049 Arabidopsis thaliana At2g39730 (At2g39730/T5I7.3) mRNA, complete cds Length = 1674 Score = 232 bits (117), Expect = 9e-58 Identities = 280/333 (84%), Gaps = 1/333 (0%) Strand = Plus / Plus Query: 152 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 211 ||||| ||||| ||||| ||||| ||||| ||||| || ||||| |||| ||||||| Sbjct: 410 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 469 Query: 212 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 271 |||| || || ||||| ||||||||||||||||||||||||||||| || || |||| Sbjct: 470 atggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaag 529 Query: 272 aacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaag 331 |||||| |||| ||||| ||||||||| | ||||| || |||||||| ||||||||||| Sbjct: 530 aacttcttgactctgcctaacatcaaggttccacttattttgggtatatggggaggcaaa 589 Query: 332 ggtcaaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatc 391 |||||||| ||||| ||||||||||||||||| | ||||||||||| |||||||| ||| Sbjct: 590 ggtcaaggtaaatccttccagtgtgagcttgtcatggccaagatgggtatcaacccaatc 649 Query: 392 atgatgagtgccggagagctgggagagtgggaacgctggagagccagccaagctcatcag 451 ||||||||||| |||||||| |||||||| ||||| ||||| || || ||||| ||| | Sbjct: 650 atgatgagtgctggagagct-tgagagtggaaacgcaggagaacccgcaaagcttatccg 708 Query: 452 gcagcggtaccgtgaggctgcagacatgatcaa 484 ||| ||||||||||||| || ||| ||||||| Sbjct: 709 tcagaggtaccgtgaggcagctgacttgatcaa 741
>gb|AY088487.1| Arabidopsis thaliana clone 7114 mRNA, complete sequence Length = 1787 Score = 232 bits (117), Expect = 9e-58 Identities = 280/333 (84%), Gaps = 1/333 (0%) Strand = Plus / Plus Query: 152 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 211 ||||| ||||| ||||| ||||| ||||| ||||| || ||||| |||| ||||||| Sbjct: 525 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 584 Query: 212 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 271 |||| || || ||||| ||||||||||||||||||||||||||||| || || |||| Sbjct: 585 atggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaag 644 Query: 272 aacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaag 331 |||||| |||| ||||| ||||||||| | ||||| || |||||||| ||||||||||| Sbjct: 645 aacttcttgactctgcctaacatcaaggttccacttattttgggtatatggggaggcaaa 704 Query: 332 ggtcaaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatc 391 |||||||| ||||| ||||||||||||||||| | ||||||||||| |||||||| ||| Sbjct: 705 ggtcaaggtaaatccttccagtgtgagcttgtcatggccaagatgggtatcaacccaatc 764 Query: 392 atgatgagtgccggagagctgggagagtgggaacgctggagagccagccaagctcatcag 451 ||||||||||| |||||||| |||||||| ||||| ||||| || || ||||| ||| | Sbjct: 765 atgatgagtgctggagagct-tgagagtggaaacgcaggagaacccgcaaagcttatccg 823 Query: 452 gcagcggtaccgtgaggctgcagacatgatcaa 484 ||| ||||||||||||| || ||| ||||||| Sbjct: 824 tcagaggtaccgtgaggcagctgacttgatcaa 856
>gb|AF329935.1|AF329935 Gossypium hirsutum ribulose-1,5-bisphosphate carboxylase/oxygenase activase 2 mRNA, partial cds Length = 1462 Score = 226 bits (114), Expect = 5e-56 Identities = 241/282 (85%), Gaps = 1/282 (0%) Strand = Plus / Plus Query: 203 gacaacaccatgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccat 262 ||||||| ||||| || ||||||||||||||||| |||||||||||||||||||| || Sbjct: 257 gacaacaacatggatggtttctacatcgctcctgcattcatggacaagcttgttgttcac 316 Query: 263 ctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctgg 322 || ||| ||||||||| |||| || ||||| ||| | || || ||| ||||||| ||| Sbjct: 317 atcagcaagaacttcatgtccctccctaacattaaggttcctctaatcctgggtatttgg 376 Query: 323 ggaggcaagggtcaaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatc 382 |||||||| |||||||||||||| ||||| |||||||||||||| ||||||||||| ||| Sbjct: 377 ggaggcaaaggtcaaggaaaatctttccaatgtgagcttgtgtttgccaagatgggtatc 436 Query: 383 aaccccatcatgatgagtgccggagagctgggagagtgggaacgctggagagccagccaa 442 |||||||||||||||||||||||||| || ||| ||||| ||||| || || |||||||| Sbjct: 437 aaccccatcatgatgagtgccggagaact-ggaaagtggaaacgccggtgaaccagccaa 495 Query: 443 gctcatcaggcagcggtaccgtgaggctgcagacatgatcaa 484 | | |||||||| |||||||||| || || ||||| ||||| Sbjct: 496 gttgatcaggcaaaggtaccgtgaagccgccgacataatcaa 537
>gb|AY312576.1| Larrea tridentata Rubisco activase beta form precursor (RCA2) mRNA, complete cds; nuclear gene for chloroplast product Length = 1694 Score = 224 bits (113), Expect = 2e-55 Identities = 249/293 (84%), Gaps = 1/293 (0%) Strand = Plus / Plus Query: 192 agtacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaagc 251 ||||| |||| ||||||| ||||| || |||||||| || || || ||||||||||||| Sbjct: 431 agtacaacttggacaacaacatggacggtttctacatagcaccagccttcatggacaagc 490 Query: 252 ttgttgtccatctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatct 311 |||| ||||| || |||| |||||| ||| || || ||||||||||| || || |||| Sbjct: 491 ttgtcgtccacatcaccaagaacttcttgagtctccctaacatcaagattcctctgatct 550 Query: 312 tgggtatctggggaggcaagggtcaaggaaaatcattccagtgtgagcttgtgttcgcca 371 ||||||||||||||||||| |||||||||||||| ||||| ||||| ||||| || |||| Sbjct: 551 tgggtatctggggaggcaaaggtcaaggaaaatctttccaatgtgaacttgtttttgcca 610 Query: 372 agatgggcatcaaccccatcatgatgagtgccggagagctgggagagtgggaacgctgga 431 ||||||| ||||||||||||||||||||||| |||||||| ||| ||||| || || ||| Sbjct: 611 agatgggaatcaaccccatcatgatgagtgctggagagct-ggaaagtggaaatgcagga 669 Query: 432 gagccagccaagctcatcaggcagcggtaccgtgaggctgcagacatgatcaa 484 || || |||||||| |||||||| |||||||||| ||||| ||||| ||||| Sbjct: 670 gaacctgccaagctgatcaggcaaaggtaccgtgaagctgctgacattatcaa 722
>gb|AF047352.1|AF047352 Datisca glomerata rubisco activase precursor, mRNA, complete cds Length = 1634 Score = 222 bits (112), Expect = 8e-55 Identities = 227/264 (85%), Gaps = 1/264 (0%) Strand = Plus / Plus Query: 221 ttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatg 280 |||||||| ||||| |||||||||||||||||||| || || || |||||||||||||| Sbjct: 476 ttctacatagctccagctttcatggacaagcttgtcgttcacatcaccaaaaacttcatg 535 Query: 281 accctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaagga 340 || || |||||||| ||| | || ||||| ||||||||||||||||| || |||||||| Sbjct: 536 actctccccaacataaaggttcctctcattttgggtatctggggaggtaaaggtcaaggt 595 Query: 341 aaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatgatgagt 400 ||||| ||||||||||||||||| || ||||||||||| ||||||||||||||||||||| Sbjct: 596 aaatctttccagtgtgagcttgtctttgccaagatgggaatcaaccccatcatgatgagt 655 Query: 401 gccggagagctgggagagtgggaacgctggagagccagccaagctcatcaggcagcggta 460 |||||||| | |||||| || ||||| |||||||| || ||| | |||||||| |||| Sbjct: 656 gccggaga-attggagagcggcaacgcaggagagcccgcgaagttgatcaggcaacggtg 714 Query: 461 ccgtgaggctgcagacatgatcaa 484 |||||||| || ||||| ||||| Sbjct: 715 tcgtgaggcggccgacatcatcaa 738
>gb|J03610.1|SPIRBCO Spinach rubisco activase mRNA, complete cds Length = 1832 Score = 222 bits (112), Expect = 8e-55 Identities = 224/260 (86%), Gaps = 1/260 (0%) Strand = Plus / Plus Query: 222 tctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatga 281 ||||||| || ||||| || ||||||||||||||||| || || |||| |||||| ||| Sbjct: 630 tctacattgcccctgcctttatggacaagcttgttgttcacatcaccaagaacttcttga 689 Query: 282 ccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaaggaa 341 | |||||||||||||||| ||||||||||||||| | |||||||||||||||||||| | Sbjct: 690 acttgcccaacatcaagataccactcatcttgggtgtttggggaggcaagggtcaaggta 749 Query: 342 aatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatgatgagtg 401 |||| ||||| ||||||||||||||||||||| | || || ||||||||||||||||||| Sbjct: 750 aatccttccaatgtgagcttgtgttcgccaagttaggaataaaccccatcatgatgagtg 809 Query: 402 ccggagagctgggagagtgggaacgctggagagccagccaagctcatcaggcagcggtac 461 ||||||| | ||| ||||| || || ||||||||||| ||| | |||||||| ||||| Sbjct: 810 ccggaga-attggaaagtggaaatgcaggagagccagctaagttgatcaggcaaaggtac 868 Query: 462 cgtgaggctgcagacatgat 481 |||||||| |||||| |||| Sbjct: 869 cgtgaggcagcagacttgat 888
>gb|AY117142.1| Chenopodium quinoa rubisco activase (rca) mRNA, complete cds Length = 1809 Score = 212 bits (107), Expect = 8e-52 Identities = 222/259 (85%), Gaps = 1/259 (0%) Strand = Plus / Plus Query: 220 cttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcat 279 ||||||||| || ||| |||||||||||||| ||||||| || || |||| |||| | | Sbjct: 514 cttctacattgccccttctttcatggacaagattgttgttcacatcaccaagaactactt 573 Query: 280 gaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaagg 339 || | |||| ||||||||| | || || ||||||||||| ||||||||||| |||||||| Sbjct: 574 gaacttgcctaacatcaaggttcccctgatcttgggtatttggggaggcaaaggtcaagg 633 Query: 340 aaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatgatgag 399 ||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 634 taaatccttccaatgtgagcttgtgttcgccaagatgggaatcaaccccatcatgatgag 693 Query: 400 tgccggagagctgggagagtgggaacgctggagagccagccaagctcatcaggcagcggt 459 ||| ||||| | ||| ||||| ||||| ||||||||||| ||| | |||||||| ||| Sbjct: 694 tgcgggaga-attggaaagtggaaacgcaggagagccagcaaagttgatcaggcaaaggt 752 Query: 460 accgtgaggctgcagacat 478 |||||||||| |||||||| Sbjct: 753 accgtgaggcagcagacat 771
>gb|AF126870.2|AF126870 Vigna radiata rubisco activase (Rca) mRNA, complete cds; nuclear gene for chloroplast product Length = 1671 Score = 212 bits (107), Expect = 8e-52 Identities = 219/255 (85%), Gaps = 1/255 (0%) Strand = Plus / Plus Query: 221 ttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatg 280 |||||||| ||||||||||| |||||||||||||||| || || |||| ||||||||| Sbjct: 469 ttctacattgctcctgcttttctggacaagcttgttgttcacatcaccaagaacttcatg 528 Query: 281 accctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaagga 340 ||| |||||||||||||| | || ||||| | |||||||||||||||||||| |||||| Sbjct: 529 accttgcccaacatcaaggttcctctcattcttggtatctggggaggcaagggacaagga 588 Query: 341 aaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatgatgagt 400 || || ||||| ||||||||||| || ||||||||||| ||||||||||||||||||||| Sbjct: 589 aagtctttccaatgtgagcttgtctttgccaagatgggaatcaaccccatcatgatgagt 648 Query: 401 gccggagagctgggagagtgggaacgctggagagccagccaagctcatcaggcagcggta 460 || |||||| | ||| ||||| || || ||||||||||| || | ||||||||| | || Sbjct: 649 gctggagag-ttggaaagtggaaatgccggagagccagcaaaattgatcaggcagagata 707 Query: 461 ccgtgaggctgcaga 475 |||||| |||||||| Sbjct: 708 ccgtgaagctgcaga 722 Score = 54.0 bits (27), Expect = 4e-04 Identities = 51/59 (86%) Strand = Plus / Plus Query: 41 tggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 99 ||||||||||| || ||||||||||| || ||||| || |||||||| || |||||||| Sbjct: 295 tggaagggtctggcctacgatatctctgatgaccaacaagacatcacaagggggaaggg 353
>gb|U35111.1|NTU35111 Nicotiana tabacum rubisco activase precursor (Rca) mRNA, complete cds Length = 1674 Score = 212 bits (107), Expect = 8e-52 Identities = 240/283 (84%), Gaps = 1/283 (0%) Strand = Plus / Plus Query: 161 tcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatgggaggc 220 |||||||| ||||||||||| || || || ||||| |||| ||||||| ||| || Sbjct: 396 tcctacgaatacgtcagccaaggtcttcgccagtacaacttggacaacaagttggacgga 455 Query: 221 ttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatg 280 |||||||||||||||||||||||||||||||||||||| || || |||| |||||| || Sbjct: 456 ttctacatcgctcctgctttcatggacaagcttgttgttcacatcaccaagaacttcttg 515 Query: 281 accctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaagga 340 | |||||||||||||| | ||||| ||||||||||||||||||||||| |||||||| Sbjct: 516 aaattgcccaacatcaaggttccacttatcttgggtatctggggaggcaaaggtcaaggc 575 Query: 341 aaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatgatgagt 400 ||||||||||||||||| ||||| ||| |||||||| ||||||||||| ||||||||| Sbjct: 576 aaatcattccagtgtgaacttgtcttcagaaagatgggaatcaaccccattatgatgagt 635 Query: 401 gccggagagctgggagagtgggaacgctggagagccagccaag 443 || ||||| | ||| ||||| || || ||||||||||||||| Sbjct: 636 gctggaga-attggaaagtggaaatgcaggagagccagccaag 677
>gb|AY312575.1| Larrea tridentata Rubisco activase alpha form precursor (RCA1) mRNA, complete cds; nuclear gene for chloroplast product Length = 1724 Score = 204 bits (103), Expect = 2e-49 Identities = 224/263 (85%), Gaps = 1/263 (0%) Strand = Plus / Plus Query: 192 agtacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaagc 251 ||||| |||| ||||||| ||||| || |||||||| || || || ||||||||||||| Sbjct: 431 agtacaacttggacaacaacatggacggtttctacatagcaccagccttcatggacaagc 490 Query: 252 ttgttgtccatctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatct 311 |||| ||||| || |||| |||||| ||| || || ||||||||||| || || |||| Sbjct: 491 ttgtcgtccacatcaccaagaacttcttgagtctccctaacatcaagattcctctgatct 550 Query: 312 tgggtatctggggaggcaagggtcaaggaaaatcattccagtgtgagcttgtgttcgcca 371 ||||||||||||||||||| |||||||||||||| ||||| ||||| ||||| || |||| Sbjct: 551 tgggtatctggggaggcaaaggtcaaggaaaatctttccaatgtgaacttgtttttgcca 610 Query: 372 agatgggcatcaaccccatcatgatgagtgccggagagctgggagagtgggaacgctgga 431 ||||||| ||||||||||||||||||||||| |||||||| ||| ||||| || || ||| Sbjct: 611 agatgggaatcaaccccatcatgatgagtgctggagagct-ggaaagtggaaatgcagga 669 Query: 432 gagccagccaagctcatcaggca 454 ||||| || ||||| |||||||| Sbjct: 670 gagcccgcaaagctgatcaggca 692
>gb|AF041068.1|AF041068 Phaseolus vulgaris rubisco activase (Rca1) mRNA, complete cds Length = 1627 Score = 190 bits (96), Expect = 3e-45 Identities = 211/248 (85%), Gaps = 1/248 (0%) Strand = Plus / Plus Query: 192 agtacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaagc 251 ||||| |||| ||||||| || || || |||||||| ||||| ||||| ||||||||| Sbjct: 436 agtacaactttgacaacatcaaggatggtttctacattgctccagcttttttggacaagc 495 Query: 252 ttgttgtccatctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatct 311 ||||||| || || |||| |||||||||||| |||||||||||||| | || ||||| Sbjct: 496 ttgttgttcacatcgccaagaacttcatgaccttgcccaacatcaaggttcctctcattc 555 Query: 312 tgggtatctggggaggcaagggtcaaggaaaatcattccagtgtgagcttgtgttcgcca 371 | ||| |||||||||||||||| ||||||||||| ||||| ||||||||||| || |||| Sbjct: 556 ttggtgtctggggaggcaagggacaaggaaaatctttccaatgtgagcttgtctttgcca 615 Query: 372 agatgggcatcaaccccatcatgatgagtgccggagagctgggagagtgggaacgctgga 431 ||||||| ||||||||||||||||||||||| |||||| | ||| ||||| || || ||| Sbjct: 616 agatgggaatcaaccccatcatgatgagtgctggagag-ttggaaagtggaaatgccgga 674 Query: 432 gagccagc 439 |||||||| Sbjct: 675 gagccagc 682
>emb|Z14980.1|NTRCAJQ4 N.tabacum Rca gene for ribulose bisphosphate carboxylase activase (pJQ4) Length = 1655 Score = 182 bits (92), Expect = 7e-43 Identities = 164/188 (87%) Strand = Plus / Plus Query: 221 ttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatg 280 ||||||||||||||| |||||||||||||||||||||| || || |||| |||||| || Sbjct: 426 ttctacatcgctccttctttcatggacaagcttgttgttcacatcaccaagaacttcttg 485 Query: 281 accctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaagga 340 | |||||||||||||| | |||||||| |||||| ||||||||||||| |||||||| Sbjct: 486 aaattgcccaacatcaaggttccactcattttgggtgtctggggaggcaaaggtcaaggt 545 Query: 341 aaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatgatgagt 400 ||||| ||||||||||||||||| ||| |||||||| |||||||| || ||||||||| Sbjct: 546 aaatctttccagtgtgagcttgtcttcagaaagatgggaatcaaccctattatgatgagt 605 Query: 401 gccggaga 408 |||||||| Sbjct: 606 gccggaga 613
>emb|X14212.1|ATRCA Arabidopsis thaliana mRNA for rubisco activase Length = 1652 Score = 180 bits (91), Expect = 3e-42 Identities = 238/283 (84%), Gaps = 3/283 (1%) Strand = Plus / Plus Query: 152 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 211 ||||| ||||| ||||| ||||| ||||| ||||| || ||||| |||| ||||||| Sbjct: 391 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 450 Query: 212 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 271 |||| || || ||||| ||||||||||||||||||||||||||||| || || |||| Sbjct: 451 atggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaag 510 Query: 272 aacttcatgaccctgcccaacatcaagatcccactcatcttgggtatct-ggggaggcaa 330 |||||| |||| ||||| ||||||||| | ||||| || ||||| ||| |||||||||| Sbjct: 511 aacttcttgactctgcctaacatcaaggttccacttattttgggc-tctcggggaggcaa 569 Query: 331 gggtcaaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccat 390 |||||||| ||||| ||||||||||||||||| | ||||||||||| |||||||| || Sbjct: 570 aggtcaaggtaaatccttccagtgtgagcttgtcatggccaagatgggtatcaacccaat 629 Query: 391 catgatgagtgccggagagctgggagagtgggaacgctggaga 433 |||||||||||| |||||||| |||||||| ||||| ||||| Sbjct: 630 catgatgagtgctggagagct-tgagagtggaaacgcaggaga 671
>gb|AF037361.1|AF037361 Lycopersicon pennellii rubisco activase mRNA, complete cds Length = 1656 Score = 180 bits (91), Expect = 3e-42 Identities = 166/191 (86%) Strand = Plus / Plus Query: 218 ggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttc 277 ||||||||||| || ||||||||||||||||| |||||||| || || |||| |||||| Sbjct: 434 ggcttctacattgcccctgctttcatggacaaacttgttgttcacatcaccaagaacttc 493 Query: 278 atgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaa 337 |||| |||||||||||||| | ||||||||||||||| | ||||||||||| |||||| Sbjct: 494 ttgacattgcccaacatcaaggttccactcatcttgggtgtatggggaggcaaaggtcaa 553 Query: 338 ggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatgatg 397 || ||||||||||| ||||||||||| ||| |||||||| ||||||||||| |||||| Sbjct: 554 ggtaaatcattccaatgtgagcttgtcttcagaaagatgggaatcaaccccattatgatg 613 Query: 398 agtgccggaga 408 ||||| ||||| Sbjct: 614 agtgctggaga 624
>emb|Z21794.1|MDRBSCACA M.domestica ribulose-1,5-bisphosphate carboxylase/oxygenase activase mRNA Length = 1853 Score = 163 bits (82), Expect = 7e-37 Identities = 212/254 (83%), Gaps = 1/254 (0%) Strand = Plus / Plus Query: 230 gctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatgaccctgccc 289 ||||| ||||| ||||||||||||||||| || || |||| |||||||||||||| || Sbjct: 485 gctcccgcttttatggacaagcttgttgttcacatcaccaagaacttcatgacccttcct 544 Query: 290 aacatcaagatcccactcatcttgggtatctggggaggcaagggtcaaggaaaatcattc 349 ||||| ||| | || |||||||||||||| ||||||||||| ||||| || || || ||| Sbjct: 545 aacatgaaggttcctctcatcttgggtatttggggaggcaaaggtcagggcaagtctttc 604 Query: 350 cagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatgatgagtgccggagag 409 ||||| |||||||| || ||||||||| | |||| ||| |||||||||||||||||||| Sbjct: 605 cagtgcgagcttgtctttgccaagatgagaatcagccctatcatgatgagtgccggaga- 663 Query: 410 ctgggagagtgggaacgctggagagccagccaagctcatcaggcagcggtaccgtgaggc 469 | ||| ||||| ||||| ||||| || || ||||| |||||||| |||||||||| || Sbjct: 664 attggaaagtggaaacgcaggagaacccgcgaagctgatcaggcaaaggtaccgtgaagc 723 Query: 470 tgcagacatgatca 483 || ||||| |||| Sbjct: 724 agccgacattatca 737 Score = 56.0 bits (28), Expect = 1e-04 Identities = 52/60 (86%) Strand = Plus / Plus Query: 64 ctccgacgaccagcaggacatcaccagagggaagggcatcgtggactcgctcttccaggc 123 |||||||||||| || |||||||| ||||| ||||| | |||||||| ||||||||||| Sbjct: 319 ctccgacgaccaacaagacatcacaagaggaaagggtaaggtggactccctcttccaggc 378
>gb|BT012795.1| Lycopersicon esculentum clone 113794R, mRNA sequence Length = 1519 Score = 159 bits (80), Expect = 1e-35 Identities = 161/188 (85%) Strand = Plus / Plus Query: 221 ttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatg 280 |||||||||||||||||||||||||||||||||||||| || || |||| |||||| | Sbjct: 473 ttctacatcgctcctgctttcatggacaagcttgttgttcacatcaccaagaacttctta 532 Query: 281 accctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaagga 340 || |||||||||||||| | ||||| || |||||| | |||||||| || |||||||| Sbjct: 533 acgttgcccaacatcaaggttccacttattttgggtgtttggggaggaaaaggtcaaggt 592 Query: 341 aaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatgatgagt 400 ||||||||||| ||||||||||| ||| |||||||| |||||||| || ||||||||| Sbjct: 593 aaatcattccaatgtgagcttgtcttcagaaagatgggaatcaacccaattatgatgagt 652 Query: 401 gccggaga 408 || ||||| Sbjct: 653 gctggaga 660
>emb|AJ271896.1|PHA271896 Pinus halepensis partial mRNA for rubisco activase (rca gene) Length = 678 Score = 149 bits (75), Expect = 1e-32 Identities = 156/183 (85%) Strand = Plus / Plus Query: 223 ctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatgac 282 |||||| ||||||||||| ||||||||||||||||| || |||| ||||||||||||| Sbjct: 156 ctacattgctcctgcttttatggacaagcttgttgttcacatctcgaaaaacttcatgaa 215 Query: 283 cctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaaggaaa 342 | |||| ||||||||| | || ||||| | ||||| ||||||||||||||||||||||| Sbjct: 216 cttgcctaacatcaaggttcctctcattcttggtatttggggaggcaagggtcaaggaaa 275 Query: 343 atcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatgatgagtgc 402 || ||||| ||||||||||| || || || |||| |||||||| || ||||||||||| Sbjct: 276 gtccttccaatgtgagcttgtatttgcaaaattgggaatcaacccaattatgatgagtgc 335 Query: 403 cgg 405 ||| Sbjct: 336 cgg 338
>gb|S45033.1| rubisco activase, ribulosebisphosphate carboxylase/oxygenase activase {alternatively spliced} [spinach, Genomic, 3691 nt] Length = 3691 Score = 105 bits (53), Expect = 1e-19 Identities = 71/77 (92%) Strand = Plus / Plus Query: 297 agatcccactcatcttgggtatctggggaggcaagggtcaaggaaaatcattccagtgtg 356 |||| ||||||||||||||| | |||||||||||||||||||| ||||| ||||| |||| Sbjct: 2238 agataccactcatcttgggtgtttggggaggcaagggtcaaggtaaatccttccaatgtg 2297 Query: 357 agcttgtgttcgccaag 373 ||||||||||||||||| Sbjct: 2298 agcttgtgttcgccaag 2314 Score = 73.8 bits (37), Expect = 5e-10 Identities = 83/97 (85%), Gaps = 1/97 (1%) Strand = Plus / Plus Query: 385 ccccatcatgatgagtgccggagagctgggagagtgggaacgctggagagccagccaagc 444 |||||||||||||||||||||||| ||| | ||||| || || ||||||||||| ||| Sbjct: 2421 ccccatcatgatgagtgccggagaattggaa-agtggaaatgcaggagagccagctaagt 2479 Query: 445 tcatcaggcagcggtaccgtgaggctgcagacatgat 481 | |||||||| ||||||||||||| |||||| |||| Sbjct: 2480 tgatcaggcaaaggtaccgtgaggcagcagacttgat 2516 Score = 61.9 bits (31), Expect = 2e-06 Identities = 67/79 (84%) Strand = Plus / Plus Query: 220 cttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcat 279 ||||||||| || ||||| || ||||||||||||||||| || || |||| |||||| | Sbjct: 2067 cttctacattgcccctgcctttatggacaagcttgttgttcacatcaccaagaacttctt 2126 Query: 280 gaccctgcccaacatcaag 298 || | |||||||||||||| Sbjct: 2127 gaacttgcccaacatcaag 2145
>gb|AF114155.1|AF114155 Artemisia annua ribulose-1,5-bisphosphate carboxylase/oxygenase activase pseudogene, partial sequence Length = 472 Score = 97.6 bits (49), Expect = 3e-17 Identities = 122/141 (86%), Gaps = 4/141 (2%) Strand = Plus / Plus Query: 329 aagggtcaaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaacccc 388 ||||||||||||||||| ||||| ||||| ||||| || ||||||||||| |||| || Sbjct: 1 aagggtcaaggaaaatctttccaatgtgaacttgtttttgccaagatgggaatcactcct 60 Query: 389 atcatgatgagtgccggagagctgggagagtgggaacgctggagagccagccaagctcat 448 |||||||||||||||||||| | || ||| |||||||| |||||||||| |||||||| Sbjct: 61 atcatgatgagtgccggaga-attagaaagt-ggaacgct-gagagccagctaagctcat 117 Query: 449 caggcagcggtaccgtgaggc 469 ||| |||| |||||||||||| Sbjct: 118 cagacagc-gtaccgtgaggc 137
>gb|AF052424.1|AF052424 Datisca glomerata rubisco activase precursor, gene, partial cds Length = 1216 Score = 95.6 bits (48), Expect = 1e-16 Identities = 72/80 (90%) Strand = Plus / Plus Query: 305 ctcatcttgggtatctggggaggcaagggtcaaggaaaatcattccagtgtgagcttgtg 364 ||||| ||||||||||||||||| || |||||||| ||||| ||||||||||||||||| Sbjct: 186 ctcattttgggtatctggggaggtaaaggtcaaggtaaatctttccagtgtgagcttgtc 245 Query: 365 ttcgccaagatgggcatcaa 384 || ||||||||||| ||||| Sbjct: 246 tttgccaagatgggaatcaa 265 Score = 67.9 bits (34), Expect = 3e-08 Identities = 55/62 (88%) Strand = Plus / Plus Query: 221 ttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatg 280 |||||||| ||||| |||||||||||||||||||| || || || |||||||||||||| Sbjct: 6 ttctacatagctccagctttcatggacaagcttgtcgttcacatcaccaaaaacttcatg 65 Query: 281 ac 282 || Sbjct: 66 ac 67 Score = 63.9 bits (32), Expect = 5e-07 Identities = 84/100 (84%), Gaps = 1/100 (1%) Strand = Plus / Plus Query: 385 ccccatcatgatgagtgccggagagctgggagagtgggaacgctggagagccagccaagc 444 |||||||||||||||||||||||| | |||||| || ||||| |||||||| || ||| Sbjct: 467 ccccatcatgatgagtgccggaga-attggagagcggcaacgcaggagagcccgcgaagt 525 Query: 445 tcatcaggcagcggtaccgtgaggctgcagacatgatcaa 484 | |||||||| |||| |||||||| || ||||| ||||| Sbjct: 526 tgatcaggcaacggtgtcgtgaggcggccgacatcatcaa 565
>gb|AY130300.1| Medicago sativa rubisco activase (Rca) mRNA, partial cds Length = 1063 Score = 91.7 bits (46), Expect = 2e-15 Identities = 73/82 (89%) Strand = Plus / Plus Query: 330 agggtcaaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaacccca 389 |||| ||||||||||| ||||| ||||||||| || ||||||||||| |||||||||| Sbjct: 7 agggacaaggaaaatctttccaagctgagcttgtctttgccaagatgggaatcaacccca 66 Query: 390 tcatgatgagtgccggagagct 411 ||||||||||||| |||||||| Sbjct: 67 tcatgatgagtgctggagagct 88
>gb|AC003000.3| Arabidopsis thaliana chromosome 2 clone T5I7 map CIC10A06, complete sequence Length = 92624 Score = 85.7 bits (43), Expect = 1e-13 Identities = 73/83 (87%) Strand = Plus / Minus Query: 302 ccactcatcttgggtatctggggaggcaagggtcaaggaaaatcattccagtgtgagctt 361 ||||| || |||||||| ||||||||||| |||||||| ||||| ||||||||||||||| Sbjct: 14733 ccacttattttgggtatatggggaggcaaaggtcaaggtaaatccttccagtgtgagctt 14674 Query: 362 gtgttcgccaagatgggcatcaa 384 || | ||||||||||| ||||| Sbjct: 14673 gtcatggccaagatgggtatcaa 14651 Score = 77.8 bits (39), Expect = 3e-11 Identities = 66/75 (88%) Strand = Plus / Minus Query: 224 tacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatgacc 283 ||||| ||||||||||||||||||||||||||||| || || |||| |||||| |||| Sbjct: 14910 tacattgctcctgctttcatggacaagcttgttgttcacatcaccaagaacttcttgact 14851 Query: 284 ctgcccaacatcaag 298 ||||| ||||||||| Sbjct: 14850 ctgcctaacatcaag 14836 Score = 63.9 bits (32), Expect = 5e-07 Identities = 81/96 (84%), Gaps = 1/96 (1%) Strand = Plus / Minus Query: 389 atcatgatgagtgccggagagctgggagagtgggaacgctggagagccagccaagctcat 448 |||||||||||||| |||||||| | ||||||| ||||| ||||| || || ||||| || Sbjct: 14555 atcatgatgagtgctggagagcttg-agagtggaaacgcaggagaacccgcaaagcttat 14497 Query: 449 caggcagcggtaccgtgaggctgcagacatgatcaa 484 | | ||| ||||||||||||| || ||| ||||||| Sbjct: 14496 ccgtcagaggtaccgtgaggcagctgacttgatcaa 14461
>emb|X67674.1|CSRUBAC C.sativus mRNA for rubisco activase Length = 2031 Score = 85.7 bits (43), Expect = 1e-13 Identities = 109/131 (83%) Strand = Plus / Plus Query: 272 aacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaag 331 |||||| ||||||| || ||||| ||| | || ||||| ||||| | |||||||| || Sbjct: 522 aacttcttgaccctcccgaacattaaggttcctctcattctgggtgtttggggaggtaaa 581 Query: 332 ggtcaaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatc 391 ||||||||||| || ||||||||||| ||||| || || |||||||| |||||||| || Sbjct: 582 ggtcaaggaaagtctttccagtgtgaacttgtatttgctaagatgggaatcaaccctatt 641 Query: 392 atgatgagtgc 402 ||||||||||| Sbjct: 642 atgatgagtgc 652
>gb|M86720.1|ATHRBCOALP Arabidopisis thaliana ribulose bisphosphate carboxylase/oxygenase activase (rca) gene, complete cds Length = 3974 Score = 85.7 bits (43), Expect = 1e-13 Identities = 73/83 (87%) Strand = Plus / Plus Query: 302 ccactcatcttgggtatctggggaggcaagggtcaaggaaaatcattccagtgtgagctt 361 ||||| || |||||||| ||||||||||| |||||||| ||||| ||||||||||||||| Sbjct: 2550 ccacttattttgggtatatggggaggcaaaggtcaaggtaaatccttccagtgtgagctt 2609 Query: 362 gtgttcgccaagatgggcatcaa 384 || | ||||||||||| ||||| Sbjct: 2610 gtcatggccaagatgggtatcaa 2632 Score = 77.8 bits (39), Expect = 3e-11 Identities = 66/75 (88%) Strand = Plus / Plus Query: 224 tacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatgacc 283 ||||| ||||||||||||||||||||||||||||| || || |||| |||||| |||| Sbjct: 2373 tacattgctcctgctttcatggacaagcttgttgttcacatcaccaagaacttcttgact 2432 Query: 284 ctgcccaacatcaag 298 ||||| ||||||||| Sbjct: 2433 ctgcctaacatcaag 2447 Score = 63.9 bits (32), Expect = 5e-07 Identities = 81/96 (84%), Gaps = 1/96 (1%) Strand = Plus / Plus Query: 389 atcatgatgagtgccggagagctgggagagtgggaacgctggagagccagccaagctcat 448 |||||||||||||| |||||||| | ||||||| ||||| ||||| || || ||||| || Sbjct: 2728 atcatgatgagtgctggagagcttg-agagtggaaacgcaggagaacccgcaaagcttat 2786 Query: 449 caggcagcggtaccgtgaggctgcagacatgatcaa 484 | | ||| ||||||||||||| || ||| ||||||| Sbjct: 2787 ccgtcagaggtaccgtgaggcagctgacttgatcaa 2822
>gb|AC135233.19| Medicago truncatula clone mth2-14c14, complete sequence Length = 108028 Score = 79.8 bits (40), Expect = 8e-12 Identities = 76/88 (86%) Strand = Plus / Minus Query: 296 aagatcccactcatcttgggtatctggggaggcaagggtcaaggaaaatcattccagtgt 355 ||||| || ||||| ||||| || ||||||||||| ||||||||||| ||||| || ||| Sbjct: 7541 aagattcctctcatattgggcatttggggaggcaaaggtcaaggaaagtcatttcaatgt 7482 Query: 356 gagcttgtgttcgccaagatgggcatca 383 |||||||| || ||||||||||| |||| Sbjct: 7481 gagcttgtatttgccaagatgggaatca 7454
>gb|AC130652.27| Medicago truncatula clone mth1-1k12, complete sequence Length = 105218 Score = 77.8 bits (39), Expect = 3e-11 Identities = 63/71 (88%) Strand = Plus / Minus Query: 314 ggtatctggggaggcaagggtcaaggaaaatcattccagtgtgagcttgtgttcgccaag 373 |||||||||||||| || |||||||||||||| ||||| ||||||||| || |||||| Sbjct: 104933 ggtatctggggaggtaaaggtcaaggaaaatctttccaagctgagcttgtctttgccaag 104874 Query: 374 atgggcatcaa 384 ||||||||||| Sbjct: 104873 atgggcatcaa 104863
>gb|AC129090.22| Medicago truncatula clone mth2-14i8, complete sequence Length = 163160 Score = 77.8 bits (39), Expect = 3e-11 Identities = 63/71 (88%) Strand = Plus / Minus Query: 314 ggtatctggggaggcaagggtcaaggaaaatcattccagtgtgagcttgtgttcgccaag 373 |||||||||||||| || |||||||||||||| ||||| ||||||||| || |||||| Sbjct: 83958 ggtatctggggaggtaaaggtcaaggaaaatctttccaagctgagcttgtctttgccaag 83899 Query: 374 atgggcatcaa 384 ||||||||||| Sbjct: 83898 atgggcatcaa 83888 Score = 56.0 bits (28), Expect = 1e-04 Identities = 49/56 (87%) Strand = Plus / Minus Query: 203 gacaacaccatgggaggcttctacatcgctcctgctttcatggacaagcttgttgt 258 ||||||||||||| || || ||||| || |||||||| ||||||||||||||||| Sbjct: 84295 gacaacaccatggatggtttttacattgcacctgcttttatggacaagcttgttgt 84240
>emb|Y10657.1|CLRCAGENE C.littorale rca gene Length = 2513 Score = 65.9 bits (33), Expect = 1e-07 Identities = 102/125 (81%) Strand = Plus / Plus Query: 218 ggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttc 277 |||||||||||| ||||||||||| |||| ||| | ||||| | |||| |||||| Sbjct: 1128 ggcttctacatctctcctgctttcctggataagatgaccatccatgttgccaagaacttc 1187 Query: 278 atgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaa 337 ||| ||||||||| |||||| | || |||||| ||||||||||||| |||||||| || Sbjct: 1188 atggacctgcccaagatcaaggttcccctcatcctgggtatctggggtggcaagggccag 1247 Query: 338 ggaaa 342 ||||| Sbjct: 1248 ggaaa 1252 Score = 48.1 bits (24), Expect = 0.027 Identities = 79/96 (82%), Gaps = 1/96 (1%) Strand = Plus / Plus Query: 375 tgggcatcaaccccatcatgatgagtgccggagagctgggagagtgggaacgctggagag 434 ||||||||| ||||||| | ||| |||||| ||||||| || ||| ||||| || ||| Sbjct: 1443 tgggcatcagccccatcgtcatgtctgccggtgagctgg-agtctggtaacgccggtgag 1501 Query: 435 ccagccaagctcatcaggcagcggtaccgtgaggct 470 || |||||||||||| | ||||| ||||| |||||| Sbjct: 1502 cccgccaagctcatccgccagcgctaccgcgaggct 1537
>gb|M62962.1|CRERBCOA C.reinhardtii ribulose 1,5-bisphosphate carboxylase/oxygenase activase mRNA, complete cds Length = 1693 Score = 54.0 bits (27), Expect = 4e-04 Identities = 57/67 (85%) Strand = Plus / Plus Query: 267 ccaaaaacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggag 326 |||| ||||||||| ||||||||| |||||| | || ||||| ||||||||||||| | Sbjct: 406 ccaagaacttcatggacctgcccaagatcaaggtgcccctcattctgggtatctggggtg 465 Query: 327 gcaaggg 333 ||||||| Sbjct: 466 gcaaggg 472
>gb|AY461703.1| Chlamydomonas reinhardtii rubisco activase (Rca) gene, complete cds Length = 4500 Score = 46.1 bits (23), Expect = 0.11 Identities = 44/51 (86%) Strand = Plus / Plus Query: 283 cctgcccaacatcaagatcccactcatcttgggtatctggggaggcaaggg 333 ||||||||| |||||| | || ||||| ||||||||||||| |||||||| Sbjct: 1634 cctgcccaagatcaaggtgcccctcattctgggtatctggggtggcaaggg 1684
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Minus Query: 66 ccgacgaccagcaggacatcacc 88 ||||||||||||||||||||||| Sbjct: 1452088 ccgacgaccagcaggacatcacc 1452066
>gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome Length = 5650368 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Minus Query: 108 actcgctcttccaggcgcccac 129 |||||||||||||||||||||| Sbjct: 2553524 actcgctcttccaggcgcccac 2553503
>gb|DQ430613.1| Sorghum propinquum locus S10003 genomic sequence Length = 619 Score = 44.1 bits (22), Expect = 0.42 Identities = 80/98 (81%), Gaps = 1/98 (1%) Strand = Plus / Plus Query: 385 ccccatcatgatgagtgccggagagctgggagagtgggaacgctggagagccagccaagc 444 ||||||| ||||||| ||||| ||||| | |||| || ||||| || ||||| || |||| Sbjct: 109 ccccatcgtgatgagcgccggcgagctag-agagcggcaacgccggtgagccggcgaagc 167 Query: 445 tcatcaggcagcggtaccgtgaggctgcagacatgatc 482 | ||| | ||||| ||||||||||| || ||| ||||| Sbjct: 168 tgatccgtcagcgctaccgtgaggccgcggacctgatc 205
>gb|DQ430612.1| Sorghum bicolor voucher PI585454 locus S10003 genomic sequence Length = 637 Score = 44.1 bits (22), Expect = 0.42 Identities = 80/98 (81%), Gaps = 1/98 (1%) Strand = Plus / Plus Query: 385 ccccatcatgatgagtgccggagagctgggagagtgggaacgctggagagccagccaagc 444 ||||||| ||||||| ||||| ||||| | |||| || ||||| || ||||| || |||| Sbjct: 127 ccccatcgtgatgagcgccggcgagctag-agagcggcaacgccggtgagccggcgaagc 185 Query: 445 tcatcaggcagcggtaccgtgaggctgcagacatgatc 482 | ||| | ||||| ||||||||||| || ||| ||||| Sbjct: 186 tgatccgtcagcgctaccgtgaggccgcggacctgatc 223
>gb|DQ430611.1| Sorghum bicolor voucher PI267539 locus S10003 genomic sequence Length = 633 Score = 44.1 bits (22), Expect = 0.42 Identities = 80/98 (81%), Gaps = 1/98 (1%) Strand = Plus / Plus Query: 385 ccccatcatgatgagtgccggagagctgggagagtgggaacgctggagagccagccaagc 444 ||||||| ||||||| ||||| ||||| | |||| || ||||| || ||||| || |||| Sbjct: 123 ccccatcgtgatgagcgccggcgagctag-agagcggcaacgccggtgagccggcgaagc 181 Query: 445 tcatcaggcagcggtaccgtgaggctgcagacatgatc 482 | ||| | ||||| ||||||||||| || ||| ||||| Sbjct: 182 tgatccgtcagcgctaccgtgaggccgcggacctgatc 219
>gb|DQ430610.1| Sorghum bicolor voucher PI267408 locus S10003 genomic sequence Length = 635 Score = 44.1 bits (22), Expect = 0.42 Identities = 80/98 (81%), Gaps = 1/98 (1%) Strand = Plus / Plus Query: 385 ccccatcatgatgagtgccggagagctgggagagtgggaacgctggagagccagccaagc 444 ||||||| ||||||| ||||| ||||| | |||| || ||||| || ||||| || |||| Sbjct: 125 ccccatcgtgatgagcgccggcgagctag-agagcggcaacgccggtgagccggcgaagc 183 Query: 445 tcatcaggcagcggtaccgtgaggctgcagacatgatc 482 | ||| | ||||| ||||||||||| || ||| ||||| Sbjct: 184 tgatccgtcagcgctaccgtgaggccgcggacctgatc 221
>gb|DQ430609.1| Sorghum bicolor voucher PI221607 locus S10003 genomic sequence Length = 635 Score = 44.1 bits (22), Expect = 0.42 Identities = 80/98 (81%), Gaps = 1/98 (1%) Strand = Plus / Plus Query: 385 ccccatcatgatgagtgccggagagctgggagagtgggaacgctggagagccagccaagc 444 ||||||| ||||||| ||||| ||||| | |||| || ||||| || ||||| || |||| Sbjct: 125 ccccatcgtgatgagcgccggcgagctag-agagcggcaacgccggtgagccggcgaagc 183 Query: 445 tcatcaggcagcggtaccgtgaggctgcagacatgatc 482 | ||| | ||||| ||||||||||| || ||| ||||| Sbjct: 184 tgatccgtcagcgctaccgtgaggccgcggacctgatc 221
>gb|DQ430608.1| Sorghum bicolor voucher PI152702 locus S10003 genomic sequence Length = 639 Score = 44.1 bits (22), Expect = 0.42 Identities = 80/98 (81%), Gaps = 1/98 (1%) Strand = Plus / Plus Query: 385 ccccatcatgatgagtgccggagagctgggagagtgggaacgctggagagccagccaagc 444 ||||||| ||||||| ||||| ||||| | |||| || ||||| || ||||| || |||| Sbjct: 129 ccccatcgtgatgagcgccggcgagctag-agagcggcaacgccggtgagccggcgaagc 187 Query: 445 tcatcaggcagcggtaccgtgaggctgcagacatgatc 482 | ||| | ||||| ||||||||||| || ||| ||||| Sbjct: 188 tgatccgtcagcgctaccgtgaggccgcggacctgatc 225
>gb|DQ430607.1| Sorghum bicolor voucher NSL92371 locus S10003 genomic sequence Length = 633 Score = 44.1 bits (22), Expect = 0.42 Identities = 80/98 (81%), Gaps = 1/98 (1%) Strand = Plus / Plus Query: 385 ccccatcatgatgagtgccggagagctgggagagtgggaacgctggagagccagccaagc 444 ||||||| ||||||| ||||| ||||| | |||| || ||||| || ||||| || |||| Sbjct: 123 ccccatcgtgatgagcgccggcgagctag-agagcggcaacgccggtgagccggcgaagc 181 Query: 445 tcatcaggcagcggtaccgtgaggctgcagacatgatc 482 | ||| | ||||| ||||||||||| || ||| ||||| Sbjct: 182 tgatccgtcagcgctaccgtgaggccgcggacctgatc 219
>gb|DQ430606.1| Sorghum bicolor voucher NSL77217 locus S10003 genomic sequence Length = 635 Score = 44.1 bits (22), Expect = 0.42 Identities = 80/98 (81%), Gaps = 1/98 (1%) Strand = Plus / Plus Query: 385 ccccatcatgatgagtgccggagagctgggagagtgggaacgctggagagccagccaagc 444 ||||||| ||||||| ||||| ||||| | |||| || ||||| || ||||| || |||| Sbjct: 125 ccccatcgtgatgagcgccggcgagctag-agagcggcaacgccggtgagccggcgaagc 183 Query: 445 tcatcaggcagcggtaccgtgaggctgcagacatgatc 482 | ||| | ||||| ||||||||||| || ||| ||||| Sbjct: 184 tgatccgtcagcgctaccgtgaggccgcggacctgatc 221
>gb|DQ430605.1| Sorghum bicolor voucher NSL77034 locus S10003 genomic sequence Length = 633 Score = 44.1 bits (22), Expect = 0.42 Identities = 80/98 (81%), Gaps = 1/98 (1%) Strand = Plus / Plus Query: 385 ccccatcatgatgagtgccggagagctgggagagtgggaacgctggagagccagccaagc 444 ||||||| ||||||| ||||| ||||| | |||| || ||||| || ||||| || |||| Sbjct: 123 ccccatcgtgatgagcgccggcgagctag-agagcggcaacgccggtgagccggcgaagc 181 Query: 445 tcatcaggcagcggtaccgtgaggctgcagacatgatc 482 | ||| | ||||| ||||||||||| || ||| ||||| Sbjct: 182 tgatccgtcagcgctaccgtgaggccgcggacctgatc 219
>gb|DQ430604.1| Sorghum bicolor voucher NSL56174 locus S10003 genomic sequence Length = 627 Score = 44.1 bits (22), Expect = 0.42 Identities = 80/98 (81%), Gaps = 1/98 (1%) Strand = Plus / Plus Query: 385 ccccatcatgatgagtgccggagagctgggagagtgggaacgctggagagccagccaagc 444 ||||||| ||||||| ||||| ||||| | |||| || ||||| || ||||| || |||| Sbjct: 117 ccccatcgtgatgagcgccggcgagctag-agagcggcaacgccggtgagccggcgaagc 175 Query: 445 tcatcaggcagcggtaccgtgaggctgcagacatgatc 482 | ||| | ||||| ||||||||||| || ||| ||||| Sbjct: 176 tgatccgtcagcgctaccgtgaggcggcggacctgatc 213
>gb|DQ430603.1| Sorghum bicolor voucher NSL56003 locus S10003 genomic sequence Length = 635 Score = 44.1 bits (22), Expect = 0.42 Identities = 80/98 (81%), Gaps = 1/98 (1%) Strand = Plus / Plus Query: 385 ccccatcatgatgagtgccggagagctgggagagtgggaacgctggagagccagccaagc 444 ||||||| ||||||| ||||| ||||| | |||| || ||||| || ||||| || |||| Sbjct: 125 ccccatcgtgatgagcgccggcgagctag-agagcggcaacgccggtgagccggcgaagc 183 Query: 445 tcatcaggcagcggtaccgtgaggctgcagacatgatc 482 | ||| | ||||| ||||||||||| || ||| ||||| Sbjct: 184 tgatccgtcagcgctaccgtgaggccgcggacctgatc 221
>gb|DQ430602.1| Sorghum bicolor voucher NSL55243 locus S10003 genomic sequence Length = 635 Score = 44.1 bits (22), Expect = 0.42 Identities = 80/98 (81%), Gaps = 1/98 (1%) Strand = Plus / Plus Query: 385 ccccatcatgatgagtgccggagagctgggagagtgggaacgctggagagccagccaagc 444 ||||||| ||||||| ||||| ||||| | |||| || ||||| || ||||| || |||| Sbjct: 125 ccccatcgtgatgagcgccggcgagctag-agagcggcaacgccggtgagccggcgaagc 183 Query: 445 tcatcaggcagcggtaccgtgaggctgcagacatgatc 482 | ||| | ||||| ||||||||||| || ||| ||||| Sbjct: 184 tgatccgtcagcgctaccgtgaggccgcggacctgatc 221
>gb|DQ430601.1| Sorghum bicolor voucher NSL51365 locus S10003 genomic sequence Length = 635 Score = 44.1 bits (22), Expect = 0.42 Identities = 80/98 (81%), Gaps = 1/98 (1%) Strand = Plus / Plus Query: 385 ccccatcatgatgagtgccggagagctgggagagtgggaacgctggagagccagccaagc 444 ||||||| ||||||| ||||| ||||| | |||| || ||||| || ||||| || |||| Sbjct: 125 ccccatcgtgatgagcgccggcgagctag-agagcggcaacgccggtgagccggcgaagc 183 Query: 445 tcatcaggcagcggtaccgtgaggctgcagacatgatc 482 | ||| | ||||| ||||||||||| || ||| ||||| Sbjct: 184 tgatccgtcagcgctaccgtgaggccgcggacctgatc 221
>gb|DQ430600.1| Sorghum bicolor voucher NSL51030 locus S10003 genomic sequence Length = 637 Score = 44.1 bits (22), Expect = 0.42 Identities = 80/98 (81%), Gaps = 1/98 (1%) Strand = Plus / Plus Query: 385 ccccatcatgatgagtgccggagagctgggagagtgggaacgctggagagccagccaagc 444 ||||||| ||||||| ||||| ||||| | |||| || ||||| || ||||| || |||| Sbjct: 127 ccccatcgtgatgagcgccggcgagctag-agagcggcaacgccggtgagccggcgaagc 185 Query: 445 tcatcaggcagcggtaccgtgaggctgcagacatgatc 482 | ||| | ||||| ||||||||||| || ||| ||||| Sbjct: 186 tgatccgtcagcgctaccgtgaggccgcggacctgatc 223
>gb|DQ430599.1| Sorghum bicolor voucher NSL50875 locus S10003 genomic sequence Length = 635 Score = 44.1 bits (22), Expect = 0.42 Identities = 80/98 (81%), Gaps = 1/98 (1%) Strand = Plus / Plus Query: 385 ccccatcatgatgagtgccggagagctgggagagtgggaacgctggagagccagccaagc 444 ||||||| ||||||| ||||| ||||| | |||| || ||||| || ||||| || |||| Sbjct: 125 ccccatcgtgatgagcgccggcgagctag-agagcggcaacgccggtgagccggcgaagc 183 Query: 445 tcatcaggcagcggtaccgtgaggctgcagacatgatc 482 | ||| | ||||| ||||||||||| || ||| ||||| Sbjct: 184 tgatccgtcagcgctaccgtgaggccgcggacctgatc 221
>gb|DQ430598.1| Sorghum bicolor voucher BTx623 locus S10003 genomic sequence Length = 639 Score = 44.1 bits (22), Expect = 0.42 Identities = 80/98 (81%), Gaps = 1/98 (1%) Strand = Plus / Plus Query: 385 ccccatcatgatgagtgccggagagctgggagagtgggaacgctggagagccagccaagc 444 ||||||| ||||||| ||||| ||||| | |||| || ||||| || ||||| || |||| Sbjct: 129 ccccatcgtgatgagcgccggcgagctag-agagcggcaacgccggtgagccggcgaagc 187 Query: 445 tcatcaggcagcggtaccgtgaggctgcagacatgatc 482 | ||| | ||||| ||||||||||| || ||| ||||| Sbjct: 188 tgatccgtcagcgctaccgtgaggccgcggacctgatc 225
>gb|AC005330.2|AC005330 Homo sapiens chromosome 19, cosmid R34047 and overlapping PCR product, complete sequence Length = 41257 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 404 ggagagctgggagagtgggaa 424 ||||||||||||||||||||| Sbjct: 19799 ggagagctgggagagtgggaa 19819
>gb|AE010322.1| Methanopyrus kandleri AV19 section 21 of 157 of the complete genome Length = 10732 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 62 atctccgacgaccagcaggacatc 85 |||||| ||||||||||||||||| Sbjct: 8676 atctcccacgaccagcaggacatc 8653
>gb|CP000110.1| Synechococcus sp. CC9605, complete genome Length = 2510659 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 2 gcagcggagaacatcgacga 21 |||||||||||||||||||| Sbjct: 173412 gcagcggagaacatcgacga 173393
>ref|XM_520373.1| PREDICTED: Pan troglodytes LOC464867 (LOC464867), mRNA Length = 1685 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 125 cccacgggcgacggcacccacgag 148 ||||||||||||| |||||||||| Sbjct: 1369 cccacgggcgacgtcacccacgag 1392
>gb|AE014291.4| Brucella suis 1330 chromosome I, complete sequence Length = 2107794 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 282 ccctgcccaacatcaagatc 301 |||||||||||||||||||| Sbjct: 1130357 ccctgcccaacatcaagatc 1130376
>ref|NM_017617.2| Homo sapiens Notch homolog 1, translocation-associated (Drosophila) (NOTCH1), mRNA Length = 9312 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 125 cccacgggcgacggcacccacgag 148 ||||||||||||| |||||||||| Sbjct: 703 cccacgggcgacgtcacccacgag 726
>gb|AC009991.5|ATAC009991 Arabidopsis thaliana chromosome III BAC F9F8 genomic sequence, complete sequence Length = 101284 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 347 ttccagtgtgagcttgtgtt 366 |||||||||||||||||||| Sbjct: 97287 ttccagtgtgagcttgtgtt 97268
>gb|AC115709.11| Mus musculus chromosome 12, clone RP23-76M3, complete sequence Length = 193170 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 218 ggcttctacatcgctcctgctttc 241 ||||||| |||||||||||||||| Sbjct: 147044 ggcttctgcatcgctcctgctttc 147067
>emb|AL592301.14| Human DNA sequence from clone RP11-413M3 on chromosome 9 Contains the 3' end of the gene for activator of G-protein signalling 3 (AGS3), two novel genes, the CARD9 gene for caspase recruitment domain family member 9, the SNAPC4 gene for a 190kDa small nuclear RNA activating complex polypeptide 4, the SDCCAG3 gene for serologically defined colon cancer antigen 3, the INPP5E gene for a 72kDa inositol polyphosphate-5-phosphatase, the gene for phosphatidylinositol polyphosphate 5-phosphatase type IV (PPI5PIV), a novel gene (KIAA0310), the 3' end of the NOTCH1 gene for Notch homolog 1 translocation-associated (Drosophila) and twenty CpG islands, complete sequence Length = 188462 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 125 cccacgggcgacggcacccacgag 148 ||||||||||||| |||||||||| Sbjct: 166513 cccacgggcgacgtcacccacgag 166490
>gb|AC104422.4| Homo sapiens chromosome 18, clone RP11-260B14, complete sequence Length = 147210 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 87 ccagagggaagggcatcgtg 106 |||||||||||||||||||| Sbjct: 35948 ccagagggaagggcatcgtg 35967
>gb|AC108471.3| Homo sapiens BAC clone RP11-539G18 from 4, complete sequence Length = 141442 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 257 gtccatctctccaaaaactt 276 |||||||||||||||||||| Sbjct: 63248 gtccatctctccaaaaactt 63229
>gb|AC100806.2| Homo sapiens chromosome 18, clone CTB-2341H11, complete sequence Length = 81641 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 87 ccagagggaagggcatcgtg 106 |||||||||||||||||||| Sbjct: 47211 ccagagggaagggcatcgtg 47230
>gb|AE009524.1| Brucella melitensis 16M chromosome I, section 81 of 195 of the complete sequence Length = 10900 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 282 ccctgcccaacatcaagatc 301 |||||||||||||||||||| Sbjct: 7760 ccctgcccaacatcaagatc 7741
>gb|AF308602.1|AF308602 Homo sapiens NOTCH 1 (N1) mRNA, complete cds Length = 7693 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 125 cccacgggcgacggcacccacgag 148 ||||||||||||| |||||||||| Sbjct: 703 cccacgggcgacgtcacccacgag 726
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 58 cgatatctccgacgaccagc 77 |||||||||||||||||||| Sbjct: 4182002 cgatatctccgacgaccagc 4181983
>gb|AE017223.1| Brucella abortus biovar 1 str. 9-941 chromosome I, complete sequence Length = 2124241 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 282 ccctgcccaacatcaagatc 301 |||||||||||||||||||| Sbjct: 1147720 ccctgcccaacatcaagatc 1147739
>ref|XM_312558.2| Anopheles gambiae str. PEST ENSANGP00000014302 (ENSANGG00000011813), partial mRNA Length = 1773 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 366 tcgccaagatgggcatcaac 385 |||||||||||||||||||| Sbjct: 641 tcgccaagatgggcatcaac 660
>emb|CR974583.24| Mouse DNA sequence from clone RP23-118G7 on chromosome 12, complete sequence Length = 219072 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 218 ggcttctacatcgctcctgctttc 241 ||||||| |||||||||||||||| Sbjct: 141825 ggcttctgcatcgctcctgctttc 141848
>emb|AM040264.1| Brucella melitensis biovar Abortus chromosome I, complete sequence, strain 2308 Length = 2121359 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 282 ccctgcccaacatcaagatc 301 |||||||||||||||||||| Sbjct: 1144872 ccctgcccaacatcaagatc 1144891
>gb|U51683.1|BAU51683 Brucella abortus phosphatidate cytidyltransferase (cdsA), group 1 outer membrane protein (omp1), LpxD (lpxD), FabZ (fabZ), and LpxA (lpxA) genes, complete cds Length = 8895 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 282 ccctgcccaacatcaagatc 301 |||||||||||||||||||| Sbjct: 8238 ccctgcccaacatcaagatc 8219
>gb|M73980.1|HUMTAN1 Human TAN-1 mRNA (homologue of Drosophila Notch gene), 5' end Length = 7332 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 125 cccacgggcgacggcacccacgag 148 ||||||||||||| |||||||||| Sbjct: 703 cccacgggcgacgtcacccacgag 726 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,004,539 Number of Sequences: 3902068 Number of extensions: 4004539 Number of successful extensions: 67725 Number of sequences better than 10.0: 107 Number of HSP's better than 10.0 without gapping: 91 Number of HSP's successfully gapped in prelim test: 16 Number of HSP's that attempted gapping in prelim test: 67296 Number of HSP's gapped (non-prelim): 394 length of query: 484 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 462 effective length of database: 17,147,199,772 effective search space: 7922006294664 effective search space used: 7922006294664 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
